Difference between revisions of "YodH"

From SubtiWiki
Jump to: navigation, search
m (Reverted edits by 134.76.70.252 (talk) to last revision by Lflorez)
Line 98: Line 98:
 
* '''Operon:''' ''[[yodH]]-[[yodI]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yodHI.html DBTBS])
 
* '''Operon:''' ''[[yodH]]-[[yodI]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yodHI.html DBTBS])
  
* '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190,15383836}}
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yodH_2133455_2134156_1 yodH] {{PubMed|22383849}}
 +
 
 +
* '''Sigma factor:''' [[SigK]] {{PubMed|15699190,15383836}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 105: Line 107:
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
  
* '''Additional information:'''  
+
* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 07:55, 16 April 2012

  • Description: unknown

Gene name yodH
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 25 kDa, 5.108
Gene length, protein length 699 bp, 233 aa
Immediate neighbours ctpA, yodI
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YodH context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU19600

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed late during sporulation in the mother cell (SigK) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

Patrick Eichenberger, Masaya Fujita, Shane T Jensen, Erin M Conlon, David Z Rudner, Stephanie T Wang, Caitlin Ferguson, Koki Haga, Tsutomu Sato, Jun S Liu, Richard Losick
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis.
PLoS Biol: 2004, 2(10);e328
[PubMed:15383836] [WorldCat.org] [DOI] (I p)