Difference between revisions of "YkkD"
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* '''Operon:''' ''[[ykkC]]-[[ykkD]]'' {{PubMed|10735877}} | * '''Operon:''' ''[[ykkC]]-[[ykkD]]'' {{PubMed|10735877}} | ||
| − | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykkD_1376855_1377172_1 ykkD] {{PubMed|22383849}} |
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| + | * '''Sigma factor:''' | ||
* '''Regulation:''' | * '''Regulation:''' | ||
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** expression of the ''[[ykkC]]-[[ykkD]]'' operon may be controlled by the presumptive ''[[ykkC]]''/''[[yxkD]]'' [[riboswitch]] {{PubMed|15096624}} | ** expression of the ''[[ykkC]]-[[ykkD]]'' operon may be controlled by the presumptive ''[[ykkC]]''/''[[yxkD]]'' [[riboswitch]] {{PubMed|15096624}} | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
Revision as of 07:27, 13 April 2012
- Description: similar to molecular chaperone
| Gene name | ykkD |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| MW, pI | 11 kDa, 8.616 |
| Gene length, protein length | 315 bp, 105 aa |
| Immediate neighbours | ykkC, ykkE |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
chaperones/ protein folding, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU13100
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: View classification (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: P49857
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Michelle M Meyer, Ming C Hammond, Yasmmyn Salinas, Adam Roth, Narasimhan Sudarsan, Ronald R Breaker
Challenges of ligand identification for riboswitch candidates.
RNA Biol: 2011, 8(1);5-10
[PubMed:21317561]
[WorldCat.org]
[DOI]
(I p)
D L Jack, M L Storms, J H Tchieu, I T Paulsen, M H Saier
A broad-specificity multidrug efflux pump requiring a pair of homologous SMR-type proteins.
J Bacteriol: 2000, 182(8);2311-3
[PubMed:10735877]
[WorldCat.org]
[DOI]
(P p)
