Difference between revisions of "YbcM"

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m (Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk)
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* '''Operon:'''  
 
* '''Operon:'''  
  
* '''[[Sigma factor]]:'''  
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybcM_213155_213469_1 ybcM] {{PubMed|22383849}}
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* '''Sigma factor:'''  
  
 
* '''Regulation:''' induced by rhamnogalacturonan [http://www.ncbi.nlm.nih.gov/pubmed/17449691 PubMed]
 
* '''Regulation:''' induced by rhamnogalacturonan [http://www.ncbi.nlm.nih.gov/pubmed/17449691 PubMed]

Revision as of 13:19, 12 April 2012

  • Description: similar to glucosamine-fructose-6-phosphate aminotransferase

Gene name ybcM
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 11 kDa, 4.787
Gene length, protein length 312 bp, 104 aa
Immediate neighbours ybcL, skfA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YbcM context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

utilization of specific carbon sources, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU01900

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation: induced by rhamnogalacturonan PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Akihito Ochiai, Takafumi Itoh, Akiko Kawamata, Wataru Hashimoto, Kousaku Murata
Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization.
Appl Environ Microbiol: 2007, 73(12);3803-13
[PubMed:17449691] [WorldCat.org] [DOI] (P p)