Difference between revisions of "Easter egg"

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* '''Description:''' RNA component of [[RNase]] P <br/><br/>
 
  
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{| align="right" border="1" cellpadding="2"
 
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
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|''rnpB''
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''rnaP ''
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Product''' || RNA component of ribonuclease P <br/>([[RNase]] P) (catalytic subunit, ribozyme)
 
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || cleavage of precursor sequences <br/>from the 5' ends of pre-tRNAs
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  401 bp
 
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypsC]]'', ''[[ypsB]]''
 
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|-
 
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rnpB_nucleotide.txt    Gene sequence      (+200bp)  ]'''
 
  
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[[File:Example.jpg]]
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|colspan="2" | '''Genetic context''' <br/> [[Image:rnpB_context.gif]]
 
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<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
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|-
 
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|}
 
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__TOC__
 
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<br/><br/><br/><br/><br/><br/><br/>
 
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= [[Categories]] containing this gene/protein =
 
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{{SubtiWiki category|[[Rnases]]}},
 
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{{SubtiWiki category|[[translation]]}},
 
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{{SubtiWiki category|[[ncRNA]]}}
 
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= This gene is a member of the following [[regulons]] =
 
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=The gene=
 
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=== Basic information ===
 
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* '''Locus tag:'''
 
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===Phenotypes of a mutant ===
 
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=== Database entries ===
 
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* '''DBTBS entry:''' no entry
 
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00045]
 
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* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2A64 2A64] (from Geobacillus stearothermophilus),  [http://www.rcsb.org/pdb/explore.do?structureId=1NBS 1NBS] (specificity domain)
 
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=The RNA=
 
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* '''Biological activity:''' 5' end maturation of precursor tRNAs
 
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* '''RNA family:'''
 
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* '''cofactor:''' divalent cations (Ca(II) or Mg (II)) for the stabilization of the complex with pre-tRNA {{PubMed|20434461}}
 
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* '''interaction:''' [[RnpA]]-RnpB
 
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=== Additional information===
 
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=Expression and regulation=
 
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* '''Operon:'''
 
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* '''Sigma factor:'''
 
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* '''Regulation:'''
 
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* '''Regulatory mechanism:'''
 
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* '''Additional information:'''
 
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=Biological materials =
 
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* '''Mutant:'''
 
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* '''Expression vector:'''
 
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* '''lacZ fusion:'''
 
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* '''GFP fusion:'''
 
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* '''two-hybrid system:'''
 
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* '''Antibody:'''
 
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=Labs working on this gene/RNA=
 
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* [[Carol Fierke]], University of Michigan, Ann Arbor, USA [https://www.chem.lsa.umich.edu/chem/faculty/facultyDetail.php?Uniqname=fierke homepage]
 
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* [[Roland Hartmann]], Marburg University, Germany [http://www.pharmazie.uni-marburg.de/pharmchem/akhartmann/ag_hartmann.htm homepage]
 
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=Your additional remarks=
 
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=References=
 
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==Reviews==
 
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<pubmed> 19215776 17868095 14691942 16650980 16980936 16679018 14550630 </pubmed>
 
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==Original Publications==
 
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<pubmed>16470227,17355991,11812129,10390342,11454206, 19549719,11454206, 19717440 ,20133747  19932118 20188108 20434461 17299131 14510496 12951523 12836338 11577704 20557101 </pubmed>
 
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[[Category:small RNA]]
 

Latest revision as of 16:46, 11 March 2012


Example.jpg