Difference between revisions of "YtrF"

From SubtiWiki
Jump to: navigation, search
Line 1: Line 1:
* '''Description:''' acetoin [[ABC transporter]]  (substrate-binding lipoprotein) <br/><br/>
+
* '''Description:''' [[ABC transporter]]  (substrate-binding lipoprotein) <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
Line 10: Line 10:
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || acetoin [[ABC transporter]]  (substrate-binding lipoprotein)  
+
|style="background:#ABCDEF;" align="center"| '''Product''' || [[ABC transporter]]  (substrate-binding lipoprotein)  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of acetoin
+
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YtrF YtrF]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YtrF YtrF]
Line 37: Line 37:
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
 
{{SubtiWiki category|[[ABC transporters]]}},
 
{{SubtiWiki category|[[ABC transporters]]}},
{{SubtiWiki category|[[utilization of specific carbon sources]]}},
 
 
{{SubtiWiki category|[[cold stress proteins]]}},
 
{{SubtiWiki category|[[cold stress proteins]]}},
 
{{SubtiWiki category|[[membrane proteins]]}}
 
{{SubtiWiki category|[[membrane proteins]]}}

Revision as of 15:44, 24 August 2011

Gene name ytrF
Synonyms
Essential no
Product ABC transporter (substrate-binding lipoprotein)
Function unknown
Interactions involving this protein in SubtInteract: YtrF
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 48 kDa, 8.292
Gene length, protein length 1308 bp, 436 aa
Immediate neighbours bceR, ytrE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YtrF context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

ABC transporters, cold stress proteins, membrane proteins

This gene is a member of the following regulons

YtrA regulon

The gene

Basic information

  • Locus tag: BSU30410

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ABC-4 integral membrane protein family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by ramoplanin (YtrA) PubMed
    • expressed early in the stationary phase PubMed
    • induced by cold shock (7.5-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed