Difference between revisions of "Scr"
| Line 15: | Line 15: | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || presecretory protein translocation | |style="background:#ABCDEF;" align="center"|'''Function''' || presecretory protein translocation | ||
| + | |- | ||
| + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this RNA in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/Scr Scr] | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaJ]]'', ''[[dnaX]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaJ]]'', ''[[dnaX]]'' | ||
Revision as of 17:55, 30 July 2011
- Description: 4.5 S RNA
| Gene name | scr |
| Synonyms | |
| Essential | no |
| Product | small cytoplasmic RNA (scRNA, 4.5S RNA),
signal recognition particle-like (SRP) component |
| Function | presecretory protein translocation |
| Interactions involving this RNA in SubtInteract: Scr | |
| Immediate neighbours | yaaJ, dnaX |
| Gene sequence (+200bp) | Protein sequence |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
- Structure:
Additional information
The RNA
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
Extended information on the RNA
- Kinetic information
- Localization
Database entries
- Structure:
Additional information
Expression and regulation
- Sigma factor: SigA (both promoters)
- Regulation:
- Regulatory mechanism:
- Additional information: transcribed as 354 nt precursor, cleaved at the 5' end by RNase III and at the 3' site by RNase J1 to yield a 275 nt molecule, final trimming to 271 nt sc RNA by RNase PH PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
Labs working on this gene/protein
David Bechhofer, Mount Sinai School, New York, USA Homepage
Your additional remarks
References
Shiyi Yao, Joshua B Blaustein, David H Bechhofer
Processing of Bacillus subtilis small cytoplasmic RNA: evidence for an additional endonuclease cleavage site.
Nucleic Acids Res: 2007, 35(13);4464-73
[PubMed:17576666]
[WorldCat.org]
[DOI]
(I p)
H Takamatsu, K Bunai, T Horinaka, A Oguro, K Nakamura, K Watabe, K Yamane
Identification of a region required for binding to presecretory protein in Bacillus subtilis Ffh, a homologue of the 54-kDa subunit of mammalian signal recognition particle.
Eur J Biochem: 1997, 248(2);575-82
[PubMed:9346318]
[WorldCat.org]
[DOI]
(P p)
J C Struck, R K Hartmann, H Y Toschka, V A Erdmann
Transcription and processing of Bacillus subtilis small cytoplasmic RNA.
Mol Gen Genet: 1989, 215(3);478-82
[PubMed:2468993]
[WorldCat.org]
[DOI]
(P p)
