Difference between revisions of "QdoR"
| Line 4: | Line 4: | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''qdoR'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' yxaF'' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
{{SubtiWiki regulon|[[LmrA regulon]]}}, | {{SubtiWiki regulon|[[LmrA regulon]]}}, | ||
| − | {{SubtiWiki regulon|[[ | + | {{SubtiWiki regulon|[[QdoR regulon]]}} |
| − | =The [[ | + | =The [[QdoR regulon]]:= |
| − | * ''[[qdoI]]-[[yxaH]]'', ''[[ | + | * ''[[qdoI]]-[[yxaH]]'', ''[[qdoR]]'' |
=The gene= | =The gene= | ||
| Line 58: | Line 58: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
| Line 82: | Line 80: | ||
* '''Cofactor(s):''' | * '''Cofactor(s):''' | ||
| − | * '''Effectors of protein activity:''' flavonoids such as quercetin act as molecular inducers and result in release from DNA targets {{PubMed|17483215}} | + | * '''Effectors of protein activity:''' flavonoids such as quercetin act as molecular inducers and result in release from DNA targets {{PubMed|17483215,21737930}} |
* '''Interactions:''' | * '''Interactions:''' | ||
| Line 102: | Line 100: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' '' | + | * '''Operon:''' ''qdoR'' {{PubMed|10746760}} |
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** induced by flavonoids such as quercetin ([[ | + | ** induced by flavonoids such as quercetin ([[QdoR]], [[LmrA]]) {{PubMed|17483215}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
** [[LmrA]]: transcription repression {{PubMed|15317768}} | ** [[LmrA]]: transcription repression {{PubMed|15317768}} | ||
| − | ** [[ | + | ** [[QdoR]]: transcription repression {{PubMed|17483215}} |
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 134: | Line 132: | ||
=References= | =References= | ||
| − | + | <pubmed>17483215,10746760,21737930</pubmed> | |
| − | <pubmed>17483215,10746760 , </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 17:20, 10 July 2011
| Gene name | qdoR |
| Synonyms | yxaF |
| Essential | no |
| Product | transcriptional regulator |
| Function | control of quercetin utilization |
| MW, pI | 20 kDa, 6.111 |
| Gene length, protein length | 573 bp, 191 aa |
| Immediate neighbours | qdoI, yxnA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
transcription factors and their control, resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)
This gene is a member of the following regulons
The QdoR regulon:
The gene
Basic information
- Locus tag: BSU39990
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s): LmrA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity: flavonoids such as quercetin act as molecular inducers and result in release from DNA targets PubMed
- Interactions:
- Localization:
Database entries
- Structure: 1SGM
- UniProt: P42105
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: qdoR PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
