Difference between revisions of "YodR"
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
+ | {{SubtiWiki category|[[sporulation proteins]]}}, | ||
{{SubtiWiki category|[[poorly characterized/ putative enzymes]]}} | {{SubtiWiki category|[[poorly characterized/ putative enzymes]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
+ | {{SubtiWiki regulon|[[SigE regulon]]}} | ||
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=Expression and regulation= | =Expression and regulation= | ||
+ | * '''Operon:''' ''[[yodT]]-[[yodS]]-[[yodR]]-[[yodQ]]-[[yodP]]-[[kamA]]-[[yokU]]'' {{PubMed|14523133}} | ||
− | * ''' | + | * '''[[Sigma factor]]:''' [[SigE]] {{PubMed|14523133}} |
− | + | * '''Regulation:''' expressed early during sporuation in the mother cell ([[SigE]]) {{PubMed|14523133}} | |
− | |||
− | * '''Regulation:''' | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
Line 125: | Line 126: | ||
=References= | =References= | ||
− | + | <pubmed> 14523133</pubmed> | |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] |
Revision as of 15:04, 5 May 2011
- Description: similar to butyrate-acetoacetate CoA-transferase
Gene name | yodR |
Synonyms | |
Essential | no |
Product | unknown |
Function | unknown |
MW, pI | 23 kDa, 6.107 |
Gene length, protein length | 651 bp, 217 aa |
Immediate neighbours | yodQ, yodS |
Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context This image was kindly provided by SubtiList
|
Contents
Categories containing this gene/protein
sporulation proteins, poorly characterized/ putative enzymes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU19720
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Butanoyl-CoA + acetoacetate = butanoate + acetoacetyl-CoA (according to Swiss-Prot)
- Protein family: cry6A endotoxin family (according to Swiss-Prot)
- Paralogous protein(s): ScoB
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: O34466
- KEGG entry: [2]
- E.C. number: 2.8.3.9
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References