Difference between revisions of "GamR"

From SubtiWiki
Jump to: navigation, search
Line 30: Line 30:
  
 
<br/><br/><br/>
 
<br/><br/><br/>
 +
 +
= [[Categories]] containing this gene/protein =
 +
{{SubtiWiki category|[[cell wall degradation/ turnover]]}},
 +
{{SubtiWiki category|[[utilization of specific carbon sources]]}},
 +
{{SubtiWiki category|[[transcription factors and their control]]}}
 +
 +
= This gene is a member of the following [[regulons]] =
 +
  
 
=The gene=
 
=The gene=
Line 49: Line 57:
  
  
= Categories containing this gene/protein =
+
 
{{SubtiWiki category|[[cell wall degradation/ turnover]]}},
 
{{SubtiWiki category|[[utilization of specific carbon sources]]}},
 
{{SubtiWiki category|[[transcription factors and their control]]}}
 
 
=The protein=
 
=The protein=
  

Revision as of 16:21, 8 December 2010

  • Description: similar to transcriptional regulator (GntR family)

Gene name ybgA
Synonyms
Essential no
Product transcriptional regulator (GntR family)
Function putatively regulation of the gamA-gamP operon
MW, pI 26 kDa, 5.559
Gene length, protein length 705 bp, 235 aa
Immediate neighbours gamA, ybgB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YbgA context.gif
This image was kindly provided by SubtiList




Categories containing this gene/protein

cell wall degradation/ turnover, utilization of specific carbon sources, transcription factors and their control

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU02370

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Jonathan Reizer, Steffi Bachem, Aiala Reizer, Maryvonne Arnaud, Milton H Saier, Jörg Stülke
Novel phosphotransferase system genes revealed by genome analysis - the complete complement of PTS proteins encoded within the genome of Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 12);3419-3429
[PubMed:10627040] [WorldCat.org] [DOI] (P p)