Difference between revisions of "YdbD"

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(Expression and regulation)
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= Categories containing this gene/protein =
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{{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}},
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{{SubtiWiki category|[[resistance against oxidative and electrophile stress]]}}
 
=The protein=
 
=The protein=
  

Revision as of 21:17, 30 November 2010

  • Description: general stress protein, similar to manganese-containing catalase

Gene name ydbD
Synonyms
Essential no
Product unknown
Function survival of ethanol stress
MW, pI 30 kDa, 4.858
Gene length, protein length 819 bp, 273 aa
Immediate neighbours ydbC, dctB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdbD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU04430

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

Categories containing this gene/protein

general stress proteins (controlled by SigB), resistance against oxidative and electrophile stress

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 2 H2O2 = O2 + 2 H2O (according to Swiss-Prot)
  • Protein family: manganese catalase family (according to Swiss-Prot)
  • Paralogous protein(s): YjqC

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528] [WorldCat.org] [DOI] (P p)

Kei Asai, Sang-Hoon Baik, Yasuhiro Kasahara, Shigeki Moriya, Naotake Ogasawara
Regulation of the transport system for C4-dicarboxylic acids in Bacillus subtilis.
Microbiology (Reading): 2000, 146 ( Pt 2);263-271
[PubMed:10708364] [WorldCat.org] [DOI] (P p)