Difference between revisions of "YabE"
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| − | * '''Description:''' | + | * '''Description:''' resuscitation-promoting factor/stationary-phase survival (Rpf/Sps) |
| + | family autolysin.<br/><br/> | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''yabE'' | + | * '''Operon:''' ''yabE'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed] |
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed] |
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' expression is negatively controlled by a cis-acting antisense RNA that is dependent on [[SigX]] and [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed] |
=Biological materials = | =Biological materials = | ||
| Line 119: | Line 120: | ||
=References= | =References= | ||
| − | # | + | # Eiamphungporn W, Helmann JD (2009) Extracytoplasmic function sigma factors regulate expression of the ''Bacillus subtilis yabE'' gene via a cis-acting antisense RNA. ''J. Bacteriol.'' '''191:''' 1101-1105. [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed] |
Revision as of 20:26, 5 February 2009
- Description: resuscitation-promoting factor/stationary-phase survival (Rpf/Sps)
family autolysin.
| Gene name | yabE |
| Synonyms | |
| Essential | |
| Product | |
| Function | unknown |
| MW, pI | 47 kDa, 9.282 |
| Gene length, protein length | 1311 bp, 437 aa |
| Immediate neighbours | |
| Gene sequence (+200bp) | Protein sequence |
Genetic context 
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains: contains a SPS domain
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry:
- E.C. number:
Additional information
Expression and regulation
- Operon: yabE PubMed
- Regulation:
- Regulatory mechanism:
- Additional information: expression is negatively controlled by a cis-acting antisense RNA that is dependent on SigX and SigM PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
John Helmann, Cornell University, USA Homepage
Your additional remarks
References
- Eiamphungporn W, Helmann JD (2009) Extracytoplasmic function sigma factors regulate expression of the Bacillus subtilis yabE gene via a cis-acting antisense RNA. J. Bacteriol. 191: 1101-1105. PubMed
