Difference between revisions of "SndA"
| Line 88: | Line 88: | ||
=Expression and regulation= | =Expression and regulation= | ||
| + | * '''Operon:''' ''[[ytmI]]-[[tcyJ]]-[[tcyK]]-[[tcyL]]-[[tcyM]]-[[tcyN]]-[[ytmO]]-[[ytnI]]-[[ytnJ]]-[[ribR]]-[[ytnL]]-[[ytnM]]'' {{PubMed|15668000}} | ||
| − | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|15272571}} | |
| − | |||
| − | * '''[[Sigma factor]]:''' [[SigA]] | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** repressed in the presence of cysteine ([[CymR]]) {{PubMed|16109943}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[CymR]]: transcription repression {{PubMed|16109943}} | ||
| + | ** [[YtlI]]: transcription activation {{PubMed|16109943}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 119: | Line 121: | ||
=References= | =References= | ||
| − | <pubmed>16109943,, </pubmed> | + | <pubmed>16109943,15668000, 15272571</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 22:23, 18 December 2009
- Description: unknown
| Gene name | ytnL |
| Synonyms | hipO |
| Essential | no |
| Product | unknown |
| Function | unknown |
| MW, pI | 45 kDa, 5.545 |
| Gene length, protein length | 1248 bp, 416 aa |
| Immediate neighbours | ytnM, ribR |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU29290
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: peptidase M20 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: O34980
- KEGG entry: [3]
- E.C. number:
Additional information
The gene was annotated in KEGG and MetaCyc as hippurate hydrolase EC 3.5.1.32. In Swiss-Prot it is marked as “uncharacterized hydrolase”. No literature/experimental evidence supporting ththeannotation was removed as of November 2009. PubMed
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
