Difference between revisions of "Sandbox"
(Replaced content with '=== Database entries === * '''Structure:''' CcpA-Crh-DNA-complex [http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?Dopt=s&uid=52326 NCBI], complex with P-Ser-[[PtsH |H…') |
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+ | * '''Description:''' write here <br/><br/> | ||
+ | |||
+ | {| align="right" border="1" cellpadding="2" | ||
+ | |- | ||
+ | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
+ | |''genE'' | ||
+ | |- | ||
+ | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | ||
+ | |- | ||
+ | |style="background:#ABCDEF;" align="center"| '''Essential''' || write here | ||
+ | |- | ||
+ | |style="background:#ABCDEF;" align="center"| '''Product''' || write here | ||
+ | |- | ||
+ | |style="background:#ABCDEF;" align="center"|'''Function''' || write here | ||
+ | |- | ||
+ | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || xx,x kDa, y.yy | ||
+ | |- | ||
+ | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || aaa bp, bbb amino acids | ||
+ | |- | ||
+ | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[genA]]'', ''[[genB]]'' | ||
+ | |- | ||
+ | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt Gene sequence (+200bp) ]''' | ||
+ | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_protein.txt Protein sequence]''' | ||
+ | |- | ||
+ | |colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]] | ||
+ | |- | ||
+ | |} | ||
+ | |||
+ | __TOC__ | ||
+ | |||
+ | <br/><br/> | ||
+ | |||
+ | =The gene= | ||
+ | |||
+ | === Basic information === | ||
+ | |||
+ | * '''Locus tag:''' | ||
+ | |||
+ | * '''Strains in which this gene is present:''' | ||
+ | |||
+ | * '''Strains in which this gene is absent:''' | ||
+ | |||
+ | ===The role of this gene in virulence=== | ||
+ | |||
+ | ===Phenotypes of a mutant === | ||
+ | |||
=== Database entries === | === Database entries === | ||
− | * ''' | + | * '''StaphDB entry:''' [http://dbtbs.hgc.jp/COG/prom/rocG.html] |
+ | |||
+ | * '''The corresponding gene in ''Bacillus subtilis'':''' [http://subtiwiki.uni-goettingen.de/wiki/index.php/CcpA ''Subti''Wiki] | ||
+ | |||
+ | === Additional information=== | ||
+ | |||
+ | =The protein= | ||
+ | |||
+ | === Basic information/ Evolution === | ||
+ | |||
+ | * '''Catalyzed reaction/ biological activity:''' | ||
+ | |||
+ | * '''Protein family:''' | ||
+ | |||
+ | * '''Paralogous protein(s):''' | ||
+ | |||
+ | === Extended information on the protein === | ||
+ | |||
+ | * '''Kinetic information:''' | ||
+ | |||
+ | * '''Domains:''' | ||
+ | |||
+ | * '''Modification:''' | ||
+ | |||
+ | * '''Cofactor(s):''' | ||
+ | |||
+ | * '''Effectors of protein activity:''' | ||
+ | |||
+ | * '''Interactions:''' | ||
+ | |||
+ | * '''Localization:''' | ||
+ | |||
+ | === Database entries === | ||
+ | |||
+ | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=abcd abcd] | ||
+ | |||
+ | * '''Swiss prot entry:''' | ||
+ | |||
+ | * '''KEGG entry:''' | ||
+ | |||
+ | * '''E.C. number:''' | ||
+ | |||
+ | === Additional information=== | ||
+ | |||
+ | =Expression and regulation= | ||
+ | |||
+ | * '''Operon:''' | ||
+ | |||
+ | * '''Sigma factor:''' | ||
+ | |||
+ | * '''Regulation:''' | ||
+ | |||
+ | * '''Regulatory mechanism:''' | ||
+ | |||
+ | * '''Additional information:''' | ||
+ | |||
+ | =Biological materials = | ||
+ | |||
+ | * '''Mutant:''' | ||
+ | |||
+ | * '''Expression vector:''' | ||
+ | |||
+ | * '''lacZ fusion:''' | ||
+ | |||
+ | * '''GFP fusion:''' | ||
+ | |||
+ | * '''two-hybrid system:''' | ||
+ | |||
+ | * '''Antibody:''' | ||
+ | |||
+ | =Labs working on this gene/protein= | ||
+ | |||
+ | =Your additional remarks= | ||
− | + | =References= | |
− | + | <pubmed> 19422832 </pubmed> |
Revision as of 18:26, 5 December 2009
- Description: write here
Gene name | genE |
Synonyms | |
Essential | write here |
Product | write here |
Function | write here |
MW, pI | xx,x kDa, y.yy |
Gene length, protein length | aaa bp, bbb amino acids |
Immediate neighbours | genA, genB |
Gene sequence (+200bp) | Protein sequence |
Genetic context File:GenE context.gif |
Contents
The gene
Basic information
- Locus tag:
- Strains in which this gene is present:
- Strains in which this gene is absent:
The role of this gene in virulence
Phenotypes of a mutant
Database entries
- StaphDB entry: [1]
- The corresponding gene in Bacillus subtilis: SubtiWiki
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure: abcd
- Swiss prot entry:
- KEGG entry:
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References