Difference between revisions of "RnjB"
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| − | * '''Description:''' RNase J2<br/><br/> | + | * '''Description:''' [[RNase]] J2<br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
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| − | |style="background:#ABCDEF;" align="center"| '''Product''' || RNase J2 | + | |style="background:#ABCDEF;" align="center"| '''Product''' || [[RNase]] J2 |
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|style="background:#ABCDEF;" align="center"|'''Function''' || RNA processing and degradation | |style="background:#ABCDEF;" align="center"|'''Function''' || RNA processing and degradation | ||
| Line 56: | Line 56: | ||
* '''Catalyzed reaction/ biological activity:''' endoribonuclease, involved in processing of ''[[thrS]]'' mRNA | * '''Catalyzed reaction/ biological activity:''' endoribonuclease, involved in processing of ''[[thrS]]'' mRNA | ||
| − | * '''Protein family:''' RNase J subfamily (according to Swiss-Prot) | + | * '''Protein family:''' [[RNase]] J subfamily (according to Swiss-Prot) |
* '''Paralogous protein(s):''' [[RnjA]] | * '''Paralogous protein(s):''' [[RnjA]] | ||
Revision as of 09:25, 3 November 2009
- Description: RNase J2
| Gene name | rnjB |
| Synonyms | ymfA |
| Essential | no |
| Product | RNase J2 |
| Function | RNA processing and degradation |
| MW, pI | 56 kDa, 9.18 |
| Gene length, protein length | 1545 bp, 515 aa |
| Immediate neighbours | dapA, tepA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Contents
The gene
Basic information
- Locus tag: BSU16780
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: endoribonuclease, involved in processing of thrS mRNA
- Protein family: RNase J subfamily (according to Swiss-Prot)
- Paralogous protein(s): RnjA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- Structure: 3BK1 (RNase J from Thermus thermophilus) 3BK2 (RNase J from Thermus thermophilus, complex with UMP)
- UniProt: O31760
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant: GP45 (spc), GP1113 (miniTn10 spc), both available in Stülke lab
- Expression vector:
- GFP fusion:
- two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
- Antibody:
Labs working on this gene/protein
Harald Putzer, IBPC Paris, France Homepage
Your additional remarks
References
