Difference between revisions of "YtpT"

From SubtiWiki
Jump to: navigation, search
 
(7 intermediate revisions by 3 users not shown)
Line 1: Line 1:
* '''Description:''' similar to DNA translocase stage III sporulation protein (SpoIIIE) <br/><br/>
+
'''This gene had been annotated by [http://www.ncbi.nlm.nih.gov/sites/entrez/9384377 Kunst et al.] (1997) but was deleted according to [http://www.ncbi.nlm.nih.gov/sites/entrez/19383706 Barbe et al.]  (2009)'''
  
{| align="right" border="1" cellpadding="2"
+
This gene was merged with [[ytpS]], the new designations are [[sftA]] or [[cdtA]]
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|''ytpT''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 77 kDa, 4.694 
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2106 bp, 702 aa
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[murC]]'', ''[[ytpS]]''
 
|-
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ytpT_nucleotide.txt    Gene sequence      (+200bp)  ]'''
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ytpT_protein.txt Protein sequence]'''
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ytpT_context.gif]]
 
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|}
 
 
 
__TOC__
 
 
 
<br/><br/>
 
 
 
=The gene=
 
 
 
=== Basic information ===
 
 
 
* '''Coordinates:'''
 
 
 
===Phenotypes of a mutant ===
 
 
 
=== Database entries ===
 
 
 
* '''DBTBS entry:''' no entry
 
 
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13907]
 
 
 
=== Additional information===
 
 
 
 
 
=The protein=
 
 
 
=== Basic information/ Evolution ===
 
 
 
* '''Catalyzed reaction/ biological activity:'''
 
 
 
* '''Protein family:'''
 
 
 
* '''Paralogous protein(s):'''
 
 
 
=== Extended information on the protein ===
 
 
 
* '''Kinetic information:'''
 
 
 
* '''Domains:'''
 
 
 
* '''Modification:'''
 
 
 
* '''Cofactor(s):'''
 
 
 
* '''Effectors of protein activity:'''
 
 
 
* '''Interactions:'''
 
 
 
* '''Localization:'''
 
 
 
=== Database entries ===
 
 
 
* '''Structure:'''
 
 
 
* '''Swiss prot entry:'''
 
 
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU29800]
 
 
 
* '''E.C. number:'''
 
 
 
=== Additional information===
 
 
 
=Expression and regulation=
 
 
 
* '''Operon:'''
 
 
 
* '''Sigma factor:'''
 
 
 
* '''Regulation:'''
 
 
 
* '''Regulatory mechanism:'''
 
 
 
* '''Additional information:'''
 
 
 
=Biological materials =
 
 
 
* '''Mutant:'''
 
 
 
* '''Expression vector:'''
 
       
 
* '''lacZ fusion:'''
 
 
 
* '''GFP fusion:'''
 
 
 
* '''two-hybrid system:'''
 
 
 
* '''Antibody:'''
 
 
 
=Labs working on this gene/protein=
 
 
 
=Your additional remarks=
 
 
 
=References=
 
 
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 

Latest revision as of 08:38, 13 October 2009

This gene had been annotated by Kunst et al. (1997) but was deleted according to Barbe et al. (2009)

This gene was merged with ytpS, the new designations are sftA or cdtA