Difference between revisions of "CypC"

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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''cypC'' (according to [http://dbtbs.hgc.jp/COG/prom/cypC.html DBTBS])
  
 
* '''[[Sigma factor]]:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]  
 
* '''[[Sigma factor]]:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]  

Revision as of 09:09, 2 August 2009

  • Description: "fatty acid beta-hydroxylating cytochrome P450, hydroxylates myristic acid to beta-hydroxymyristic

Gene name cypC
Synonyms ybdT
Essential no
Product fatty acid beta-hydroxylating cytochrome P450
Function biosynthesis of beta-hydroxy fatty acid
MW, pI 47 kDa, 6.468
Gene length, protein length 1251 bp, 417 aa
Immediate neighbours ybxI, ybyB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
CypC context.gif
This image was kindly provided by SubtiList





The gene

Basic information

  • Locus tag: BSU02100

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: cytochrome P450 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: cypC (according to DBTBS)
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528] [WorldCat.org] [DOI] (P p)

Dong-Sun Lee, Akari Yamada, Hiroshi Sugimoto, Isamu Matsunaga, Hisashi Ogura, Kosuke Ichihara, Shin-Ichi Adachi, Sam-Yong Park, Yoshitsugu Shiro
Substrate recognition and molecular mechanism of fatty acid hydroxylation by cytochrome P450 from Bacillus subtilis. Crystallographic, spectroscopic, and mutational studies.
J Biol Chem: 2003, 278(11);9761-7
[PubMed:12519760] [WorldCat.org] [DOI] (P p)

Dong Sun Lee, Akari Yamada, Isamu Matsunaga, Kosuke Ichihara, Shin-ichi Adachi, Sam-Yong Park, Yoshitsugu Shiro
Crystallization and preliminary X-ray diffraction analysis of fatty-acid hydroxylase cytochrome P450BSbeta from Bacillus subtilis.
Acta Crystallogr D Biol Crystallogr: 2002, 58(Pt 4);687-9
[PubMed:11914497] [WorldCat.org] [DOI] (P p)

I Matsunaga, A Ueda, N Fujiwara, T Sumimoto, K Ichihara
Characterization of the ybdT gene product of Bacillus subtilis: novel fatty acid beta-hydroxylating cytochrome P450.
Lipids: 1999, 34(8);841-6
[PubMed:10529095] [WorldCat.org] [DOI] (P p)