YloV - Revision history

134.76.70.252 at 14:19, 17 April 2014

2014-04-17T14:19:29Z

134.76.70.252 at 09:50, 17 April 2014

2014-04-17T09:50:39Z

134.76.38.147 at 13:41, 2 April 2014

2014-04-02T13:41:59Z

Dtoedter: /* Biological materials */

2013-09-19T09:18:38Z

‎Biological materials

134.76.70.252 at 13:19, 16 May 2013

2013-05-16T13:19:46Z

134.76.70.252 at 10:12, 14 May 2013

2013-05-14T10:12:11Z

134.76.70.252 at 12:48, 13 May 2013

2013-05-13T12:48:34Z

Jstuelk at 20:28, 28 November 2012

2012-11-28T20:28:02Z

134.76.70.252 at 09:36, 7 August 2012

2012-08-07T09:36:09Z

Jstuelk at 17:56, 21 April 2012

2012-04-21T17:56:11Z

← Older revision		Revision as of 14:19, 17 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' unknown <br/><br/>~~	+	{{#bank: YloV}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yloV''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15840 yloV]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 59 kDa, 4.282~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1659 bp, 553 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yloU]]'', ''[[sdaAB]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15840 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15840 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15840 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yloV_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yloV_1656442_1658103_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yloV_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15840]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[proteins of unknown function]]}},~~
−	~~{{SubtiWiki category\|[[phosphoproteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU15840
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15840&redirect=T BSU15840]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13396]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−	** phosphorylated on Arg-255 {{PubMed\|22517742}}
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15840&redirect=T BSU15840]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O34751 O34751]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU15840]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	* subject to Clp-dependent proteolysis upon glucose starvation {{PubMed\|17981983}}
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[yloU]]-[[yloV]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yloV_1656442_1658103_1 yloV] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:''' subject to Clp-dependent proteolysis upon glucose starvation {{PubMed\|17981983}}
−	** number of protein molecules per cell (minimal medium with glucose and ammonium): 520 {{PubMed\|24696501}}
−	** number of protein molecules per cell (complex medium with amino acids, without glucose): 2432 {{PubMed\|24696501}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** GP1466 (''yloV''::''cat''), available in [[Jörg Stülke]]'s lab
−	** GP1467 (''[[yloU]] - yloV''::''cat''), available in [[Jörg Stülke]]'s lab
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>22383849 17981983 22517742</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

← Older revision		Revision as of 09:50, 17 April 2014
Line 119:		Line 119:

	* '''Additional information:''' subject to Clp-dependent proteolysis upon glucose starvation {{PubMed\|17981983}}		* '''Additional information:''' subject to Clp-dependent proteolysis upon glucose starvation {{PubMed\|17981983}}
		+	** number of protein molecules per cell (minimal medium with glucose and ammonium): 520 {{PubMed\|24696501}}
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 2432 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 53: / Line 53: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 91: / Line 92: @@
 === Database entries ===
 * '''Structure:'''

← Older revision		Revision as of 09:18, 19 September 2013
Line 121:		Line 121:

	* '''Mutant:'''		* '''Mutant:'''
		+	** GP1466 (''yloV''::''cat''), available in [[Jörg Stülke]]'s lab
		+	** GP1467 (''[[yloU]] - yloV''::''cat''), available in [[Jörg Stülke]]'s lab

	* '''Expression vector:'''		* '''Expression vector:'''

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yloV_1656442_1658103_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yloV_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yloV_1656442_1658103_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yloV_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15840]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yloU]]'', ''[[sdaAB]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15840 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15840 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15840 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15840 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15840 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15840 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yloV_context.gif]]

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU15840 yloV]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15840 yloV]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 59 kDa, 4.282
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yloU]]'', ''[[sdaAB]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13457&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15840 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15840 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15840 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yloV_context.gif]]

@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 90: / Line 86: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 114: / Line 110: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yloV_1656442_1658103_1 yloV] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''

@@ Line 82: / Line 82: @@
 * '''Modification:'''
 * '''Cofactor(s):'''
@@ Line 138: / Line 139: @@
 =References=
-<pubmed>22383849</pubmed>
+<pubmed>22383849 17981983 22517742</pubmed>
 [[Category:Protein-coding genes]]