Template - Revision history

Sroppel at 19:47, 15 June 2009

2009-06-15T19:47:26Z

Jstuelk: /* The gene */

2009-06-03T09:23:48Z

‎The gene

Sroppel: Undo revision 80374 by Sroppel (Talk)

2009-06-03T09:08:49Z

Undo revision 80374 by Sroppel (Talk)

Sroppel at 13:12, 2 June 2009

2009-06-02T13:12:07Z

Jstuelk: /* References */

2009-05-22T16:21:39Z

‎References

Jstuelk: /* References */

2009-05-22T16:20:27Z

‎References

Jstuelk: /* Database entries */

2009-05-09T20:48:51Z

‎Database entries

Jstuelk at 11:56, 26 January 2009

2009-01-26T11:56:19Z

Lflorez at 09:47, 26 January 2009

2009-01-26T09:47:42Z

Jstuelk: /* The protein */

2009-01-20T12:50:42Z

‎The protein

← Older revision		Revision as of 19:47, 15 June 2009
Line 120:		Line 120:

	[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=DetailsSearch&term=subtilis+codY&log$=activity search PubMed]		[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=DetailsSearch&term=subtilis+codY&log$=activity search PubMed]
−
−
−	~~# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]~~

@@ Line 35: / Line 35: @@
 === Basic information ===
-* '''Coordinates (CDS):'''
+* '''Locus tag:'''
 ===Phenotypes of a mutant ===
@@ Line 46: / Line 46: @@
 === Additional information===
 =The protein=

@@ Line 1: / Line 1: @@
-* '''Description:''' cystine transporter, membrane protein <br/><br/>
+* '''Description:''' write here <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''tcyP''
+|''genE''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yhcL''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 |-
-|style="background:#ABCDEF;" align="center"| '''Essential''' || no
+|style="background:#ABCDEF;" align="center"| '''Essential''' || write here
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || cystine transporter, membrane protein
+|style="background:#ABCDEF;" align="center"| '''Product''' || write here
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || cystine uptake
+|style="background:#ABCDEF;" align="center"|'''Function''' || write here
 |-
-|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 9.471
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || xx,x kDa, y.yy
 |-
-|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1389 bp, 463 aa
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || aaa bp, bbb amino acids
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhcK]]'', ''[[yhcM]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[genA]]'', ''[[genB]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12741&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt     Gene sequence      (+200bp)   ]'''
 |-
-|colspan="2" | '''Genetic context''' <br/> [[Image:yhcL_context.gif]]
+|colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]]
 |-
 |}
@@ Line 35: / Line 35: @@
 === Basic information ===
-* '''Locus tag:'''
+* '''Coordinates (CDS):'''
 ===Phenotypes of a mutant ===
@@ Line 41: / Line 41: @@
 === Database entries ===
-* '''DBTBS entry:''' no entry
+* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rocG.html]
-* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11590]
+* '''SubtiList entry:'''
 === Additional information===
@@ Line 54: / Line 54: @@
 * '''Catalyzed reaction/ biological activity:'''
 * '''Protein family:'''
 * '''Paralogous protein(s):'''
@@ Line 72: / Line 72: @@
 * '''Interactions:'''
-* '''Localization:''' membrane associated [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
+* '''Localization:'''
 === Database entries ===
-* '''Structure:'''
+* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=abcd abcd]
-* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P54596 P54596]
+* '''Swiss prot entry:'''
-* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU09130 BSU09130]
+* '''KEGG entry:'''
 * '''E.C. number:'''
@@ Line 88: / Line 88: @@
 =Expression and regulation=
-* '''Operon:''' ''tcyP''
+* '''Operon:'''
-* '''[[Sigma factor]]:'''
+* '''Sigma factor:'''
-* '''Regulation:''' repressed in the presence of cysteine ([[CymR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/16513748 PubMed]
+* '''Regulation:'''
-* '''Regulatory mechanism:''' [[CymR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16513748 PubMed]
+* '''Regulatory mechanism:'''
 * '''Additional information:'''
 =Biological materials =
@@ Line 103: / Line 103: @@
 * '''Expression vector:'''
-−
 * '''lacZ fusion:'''
@@ Line 113: / Line 113: @@
 =Labs working on this gene/protein=
 =Your additional remarks=
@@ Line 120: / Line 118: @@
 =References=
-# Hahne et al. (2008) From complementarity to comprehensiveness - targeting the membrane proteome of growing ''Bacillus subtilis'' by divergent approaches. Proteomics '''8:''' 4123-4136 [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
+<pubmed> 19422832  </pubmed>
 # Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

@@ Line 1: / Line 1: @@
-* '''Description:''' write here <br/><br/>
+* '''Description:''' cystine transporter, membrane protein <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''genE''
+|''tcyP''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yhcL''
 |-
-|style="background:#ABCDEF;" align="center"| '''Essential''' || write here
+|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || write here
+|style="background:#ABCDEF;" align="center"| '''Product''' || cystine transporter, membrane protein
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || write here
+|style="background:#ABCDEF;" align="center"|'''Function''' || cystine uptake
 |-
-|style="background:#ABCDEF;" align="center"| '''MW, pI''' || xx,x kDa, y.yy
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 9.471
 |-
-|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || aaa bp, bbb amino acids
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1389 bp, 463 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[genA]]'', ''[[genB]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhcK]]'', ''[[yhcM]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt     Gene sequence      (+200bp)   ]'''
+|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12741&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 |-
-|colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]]
+|colspan="2" | '''Genetic context''' <br/> [[Image:yhcL_context.gif]]
 |-
 |}
@@ Line 35: / Line 35: @@
 === Basic information ===
-* '''Coordinates (CDS):'''
+* '''Locus tag:'''
 ===Phenotypes of a mutant ===
@@ Line 41: / Line 41: @@
 === Database entries ===
-* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rocG.html]
+* '''DBTBS entry:''' no entry
-* '''SubtiList entry:'''
+* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11590]
 === Additional information===
@@ Line 54: / Line 54: @@
 * '''Catalyzed reaction/ biological activity:'''
 * '''Protein family:'''
 * '''Paralogous protein(s):'''
@@ Line 72: / Line 72: @@
 * '''Interactions:'''
-* '''Localization:'''
+* '''Localization:''' membrane associated [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
 === Database entries ===
-* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=abcd abcd]
+* '''Structure:'''
-* '''Swiss prot entry:'''
+* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P54596 P54596]
-* '''KEGG entry:'''
+* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU09130 BSU09130]
 * '''E.C. number:'''
@@ Line 88: / Line 88: @@
 =Expression and regulation=
-* '''Operon:'''
+* '''Operon:''' ''tcyP''
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
-* '''Regulation:'''
+* '''Regulation:''' repressed in the presence of cysteine ([[CymR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/16513748 PubMed]
-* '''Regulatory mechanism:'''
+* '''Regulatory mechanism:''' [[CymR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16513748 PubMed]
 * '''Additional information:'''
 =Biological materials =
@@ Line 103: / Line 103: @@
 * '''Expression vector:'''
-−
 * '''lacZ fusion:'''
@@ Line 113: / Line 113: @@
 =Labs working on this gene/protein=
 =Your additional remarks=
@@ Line 118: / Line 120: @@
 =References=
-<pubmed> 19422832  </pubmed>
+# Hahne et al. (2008) From complementarity to comprehensiveness - targeting the membrane proteome of growing ''Bacillus subtilis'' by divergent approaches. Proteomics '''8:''' 4123-4136 [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
 # Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

← Older revision		Revision as of 16:21, 22 May 2009
Line 117:		Line 117:

	=References=		=References=
		+
		+	<pubmed> 19422832 </pubmed>

	[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=DetailsSearch&term=subtilis+codY&log$=activity search PubMed]		[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=DetailsSearch&term=subtilis+codY&log$=activity search PubMed]

← Older revision		Revision as of 16:20, 22 May 2009
Line 117:		Line 117:

	=References=		=References=
		+
		+	[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=DetailsSearch&term=subtilis+codY&log$=activity search PubMed]
		+

	# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]		# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

@@ Line 29: / Line 29: @@
 __TOC__
-<br/><br/><br/><br/><br/><br/><br/><br/><br/><br/>
+<br/><br/>
 =The gene=

← Older revision		Revision as of 12:50, 20 January 2009
Line 86:		Line 86:

	=== Additional information===		=== Additional information===
−

	=Expression and regulation=		=Expression and regulation=