SpoIIQ - Revision history

Jstuelk at 11:51, 31 October 2014

2014-10-31T11:51:42Z

Jstuelk: /* Reviews */

2014-08-13T10:49:08Z

‎Reviews

134.76.38.147 at 15:01, 2 April 2014

2014-04-02T15:01:05Z

134.76.70.252 at 09:31, 12 November 2013

2013-11-12T09:31:50Z

Jstuelk: /* References */

2013-08-16T08:50:25Z

‎References

Jstuelk: /* References */

2013-07-26T07:31:53Z

‎References

Jstuelk at 10:38, 10 July 2013

2013-07-10T10:38:33Z

Jstuelk at 10:34, 10 July 2013

2013-07-10T10:34:46Z

134.76.70.252 at 14:47, 16 May 2013

2013-05-16T14:47:36Z

134.76.70.252 at 11:29, 14 May 2013

2013-05-14T11:29:16Z

← Older revision		Revision as of 11:51, 31 October 2014
Line 1:		Line 1:
−	* '''Description:~~''' component of the [[SpoIIIAH]]-[[~~SpoIIQ~~]] type III secretion system residing in the forespore membrane, required for anchoring of proteins on both sides of the sporulation septum <br/><br/>~~	+	{{#bank: SpoIIQ}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''spoIIQ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ywnI ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| part of the transmembrane channel linking the mother cell and the forespore~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| forespore encasement by the spore coat~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36550 spoIIQ]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SpoIIQ SpoIIQ]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 30 kDa, 4.475~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 849 bp, 283 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[ywnJ]]'', ''[[ywnH]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36550 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36550 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36550 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:spoIIQ_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIQ_3759702_3760553_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:spoIIQ_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36550]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigF regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU36550
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU36550&redirect=T BSU36550]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIQ.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11978]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** required for forespore encasement by the spore coat {{PubMed\|22171814}}
−	** required for the recruitment of [[SpoIIIAH]] to the [[sporulation]] septum on the mother cell side {{PubMed\|23834622}}
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[SpoIIIAH]](12)-[[SpoIIQ]](12) (interaction between proteins membrane proteins expressed in the mother cell and the forespore, respectively; the complex forms a 60 Å channel made up of twelve subunits of each protein) {{PubMed\|22431604,22431613,15574594,21097616}}
−	** [[SpoIIQ]]-[[SpoIIE]]
−
−	* '''[[Localization]]:'''
−	** membrane protein, forms a transmembrane channel linking the mother cell and the forespore (with [[SpoIIIAH]]) {{PubMed\|22431604,22431613,22171814}}
−	** proper [[localization]] requires [[SpoIIIAH]] and degradation of septal peptidoglycan by the cell wall hydrolases [[SpoIID]] and [[SpoIIP]] {{PubMed\|23834622}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU36550&redirect=T BSU36550]
−
−	* '''Structure:'''
−	** [http://www.rcsb.org/pdb/explore/explore.do?structureId=3UZ0 3UZO]; [http://www.rcsb.org/pdb/explore/explore.do?structureId=3TUF 3TUF] (the [[SpoIIQ]]-[[SpoIIIAH]] pore forming complex) {{PubMed\|22431604,22431613}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P71044 P71044]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU36550]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''spoIIQ'' {{PubMed\|9140963}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIQ_3759702_3760553_-1 spoIIQ] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigF]] {{PubMed\|16497325,9140963}}
−
−	* '''Regulation:'''
−	** expressed early during sporulation in the forespore ([[SigF]]) {{PubMed\|16497325,15699190,9140963}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed> 23944268 25105965 </pubmed>~~
−
−	~~== Original publications ==~~
−	~~<pubmed>18812514,15752199,18077456,18485064,15574594,15044948,15882622,19609349 ,9140963 20444098 17121846 18160039 21097616 16497325,15699190 22431613 22171814 23834622 22431604 23859254 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 145: / Line 145: @@
 =References=
 == Reviews ==
-<pubmed> 23944268 </pubmed>
+<pubmed> 23944268 25105965 </pubmed>
 == Original publications ==
 <pubmed>18812514,15752199,18077456,18485064,15574594,15044948,15882622,19609349 ,9140963 20444098 17121846 18160039 21097616 16497325,15699190 22431613 22171814 23834622 22431604 23859254 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 55: / Line 55: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIQ.html]
@@ Line 96: / Line 97: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36550 spoIIQ]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SpoIIQ SpoIIQ]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SpoIIQ SpoIIQ]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 4.475

@@ Line 142: / Line 142: @@
 =References=
 <pubmed>18812514,15752199,18077456,18485064,15574594,15044948,15882622,19609349 ,9140963 20444098 17121846 18160039 21097616 16497325,15699190 22431613 22171814 23834622 22431604 23859254 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 10:38, 10 July 2013
Line 1:		Line 1:
−	* '''Description:''' component of the [[SpoIIIAH]]-[[SpoIIQ]] type III [[secretion]] system residing in the forespore membrane, required for anchoring of proteins on both sides of the sporulation septum <br/><br/>	+	* '''Description:''' component of the [[SpoIIIAH]]-[[SpoIIQ]] type III secretion system residing in the forespore membrane, required for anchoring of proteins on both sides of the sporulation septum <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 1: / Line 1: @@
-* '''Description:''' component of the [[SpoIIIAH]]-[[SpoIIQ]] type III secretion system residing in the forespore membrane, required for anchoring of proteins on both sides of the sporulation septum <br/><br/>
+* '''Description:''' component of the [[SpoIIIAH]]-[[SpoIIQ]] type III [[secretion]] system residing in the forespore membrane, required for anchoring of proteins on both sides of the sporulation septum <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 70: / Line 69: @@
 * '''Catalyzed reaction/ biological activity:'''
 ** required for forespore encasement by the spore coat {{PubMed|22171814}}
 * '''Protein family:'''
@@ Line 93: / Line 93: @@
 * '''[[Localization]]:'''
 ** membrane protein, forms a transmembrane channel linking the mother cell and the forespore (with [[SpoIIIAH]]) {{PubMed|22431604,22431613,22171814}}
 === Database entries ===
@@ Line 113: / Line 114: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIQ_3759702_3760553_-1 spoIIQ] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigF]] {{PubMed|16497325,9140963}}
+* '''[[Sigma factor]]:''' [[SigF]] {{PubMed|16497325,9140963}}
 * '''Regulation:'''
@@ Line 141: / Line 142: @@
 =References=
-'''Additional publications:'''  {{PubMed|22431604}}
+<pubmed>18812514,15752199,18077456,18485064,15574594,15044948,15882622,19609349 ,9140963 20444098 17121846 18160039 21097616 16497325,15699190 22431613 22171814 23834622 22431604</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIQ_3759702_3760553_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoIIQ_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIQ_3759702_3760553_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoIIQ_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36550]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywnJ]]'', ''[[ywnH]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36550 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36550 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36550 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36550 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36550 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36550 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:spoIIQ_context.gif]]