RsbS - Revision history

134.76.38.147 at 13:02, 2 April 2014

2014-04-02T13:02:25Z

Jstuelk at 17:27, 8 March 2014

2014-03-08T17:27:11Z

134.76.70.252 at 10:12, 7 January 2014

2014-01-07T10:12:05Z

134.76.70.252 at 15:14, 11 November 2013

2013-11-11T15:14:50Z

134.76.70.252 at 12:36, 16 May 2013

2013-05-16T12:36:29Z

134.76.70.252 at 09:31, 14 May 2013

2013-05-14T09:31:56Z

134.76.70.252 at 12:11, 13 May 2013

2013-05-13T12:11:40Z

Jstuelk at 12:24, 5 February 2013

2013-02-05T12:24:14Z

Jstuelk at 12:19, 5 February 2013

2013-02-05T12:19:03Z

134.76.70.252 at 15:18, 6 August 2012

2012-08-06T15:18:50Z

← Older revision		Revision as of 13:02, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' scaffold protein of the [[stressosome]], anti-[[RsbT]]~~	+	{{#bank: RsbS}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''rsbS''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ycxS ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| scaffold protein of the [[stressosome]], anti-[[RsbT]]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| control of [[SigB]] activity~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04680 rsbS]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RsbS RsbS]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=rsbS rsbS]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 13 kDa, 4.14~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 363 bp, 121 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[rsbR]]'', ''[[rsbT]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04680 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04680 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04680 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:rsbS_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rsbS_520237_520602_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:rsbS_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04680]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sigma factors and their control]]}},~~
−	~~{{SubtiWiki category\|[[phosphoproteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU04680
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rsbRSTUVW-sigB-rsbX.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11091]
−
−	~~=== Additional information===~~
−	* A mutation was found in this gene after evolution under relaxed selection for sporulation {{PubMed\|21821766}}
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:''' phosphorylation on Ser-59 by [[RsbT]] [http://www.ncbi.nlm.nih.gov/sites/entrez/17218307 PubMed], dephosphorylation by [[RsbX]] {{PubMed\|21362065}}
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[RsbS]]-[[RsbT]] {{PubMed\|16321960}}
−	** [[RsbS]]-[[RsbU]]
−	** [[RsbX]]-[[RsbS]] {{PubMed\|8824586}}
−	** [[RsbR]]-[[RsbS]]
−	** component of the [[stressosome]]
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3VY9 3VY9] (complete stressosome)
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P42410 P42410]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU04680]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[rsbR]]-[[rsbS]]-[[rsbT]]-[[rsbU]]-[[rsbV]]-[[rsbW]]-[[sigB]]-[[rsbX]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/8002610 PubMed]
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rsbS_520237_520602_1 rsbS] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/8002610 PubMed]
−
−	* '''Regulation:''' constitutively expressed {{PubMed\|20019076}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	* [[Bill Haldenwang]], San Antonio, USA
−	* [[Chet Price]], Davis, USA [http://foodscience.ucdavis.edu/price_lab/pricelab.html homepage]
−	* [[Rick Lewis]], Newcastle, UK [http://www.ncl.ac.uk/camb/staff/profile/r.lewis homepage]
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed>19704888 16319496 20658979 </pubmed>~~
−	~~==Original Articles==~~
−	<pubmed>8002610,8682769,9786195,8682789,10781545, 15583165,8824586,10329124,17158665, 21821766 16321960,10671474,8808936,15312768,11244072,15342582,,16321960, 8955331, 12950928, 15466036, 9179850, 18832644 ,17218307 20019076 24599254 23320651,21362065</pubmed>
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 80: / Line 80: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:''' phosphorylation on Ser-59 by [[RsbT]] [http://www.ncbi.nlm.nih.gov/sites/entrez/17218307 PubMed], dephosphorylation by [[RsbX]] {{PubMed|21362065}}
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 148: / Line 148: @@
 ==Reviews==
 <pubmed>19704888 16319496  20658979 </pubmed>
 ==Original Articles==
-'''Additional publications:''' {{PubMed|23320651,21362065}}
+<pubmed>8002610,8682769,9786195,8682789,10781545, 15583165,8824586,10329124,17158665, 21821766 16321960,10671474,8808936,15312768,11244072,15342582,,16321960, 8955331, 12950928, 15466036, 9179850, 18832644 ,17218307 20019076 24599254 23320651,21362065</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 18: / Line 18: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RsbS RsbS]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/stress_response.html Stress]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=rsbS rsbS]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 13 kDa, 4.14

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04680 rsbS]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RsbS RsbS]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RsbS RsbS]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/stress_response.html Stress]'''

@@ Line 31: / Line 31: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rsbS_520237_520602_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rsbS_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rsbS_520237_520602_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rsbS_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04680]]
 |-
 |}

@@ Line 26: / Line 26: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rsbR]]'', ''[[rsbT]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04680 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04680 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04680 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04680 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04680 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04680 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:rsbS_context.gif]]

← Older revision		Revision as of 12:24, 5 February 2013
Line 1:		Line 1:
−	scaffold protein of the [[stressosome]], anti-[[RsbT]]	+	* '''Description:''' scaffold protein of the [[stressosome]], anti-[[RsbT]]

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 1: / Line 1: @@
+scaffold protein of the [[stressosome]], anti-[[RsbT]]
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || anti-[[RsbT]]
+|style="background:#ABCDEF;" align="center"| '''Product''' || scaffold protein of the [[stressosome]], anti-[[RsbT]]
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigB]] activity
@@ Line 39: / Line 39: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
@@ Line 86: / Line 82: @@
 * '''Domains:'''
-* '''Modification:''' phosphorylation on Ser-59 [http://www.ncbi.nlm.nih.gov/sites/entrez/17218307 PubMed], dephosphorylation by [[RsbX]] {{PubMed|21362065}}
+* '''Modification:''' phosphorylation on Ser-59 by [[RsbT]] [http://www.ncbi.nlm.nih.gov/sites/entrez/17218307 PubMed], dephosphorylation by [[RsbX]] {{PubMed|21362065}}
 * '''Cofactor(s):'''
@@ Line 119: / Line 115: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rsbS_520237_520602_1 rsbS] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/8002610 PubMed]
+* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/8002610 PubMed]
 * '''Regulation:''' constitutively expressed {{PubMed|20019076}}
@@ Line 154: / Line 150: @@
 ==Original Articles==
-'''Additional publications:''' {{PubMed|21362065}}
+'''Additional publications:''' {{PubMed|23320651,21362065}}
 <pubmed>8002610,8682769,9786195,8682789,10781545, 15583165,8824586,10329124,17158665, 21821766 16321960,10671474,8808936,15312768,11244072,15342582,,16321960, 8955331, 12950928, 15466036, 9179850, 18832644 ,17218307 20019076</pubmed>
 [[Category:Protein-coding genes]]