RodZ - Revision history

Jstuelk at 09:07, 17 December 2014

2014-12-17T09:07:56Z

Jstuelk: /* References */

2014-12-17T09:06:19Z

‎References

134.76.70.252 at 09:53, 17 April 2014

2014-04-17T09:53:58Z

134.76.38.147 at 13:46, 2 April 2014

2014-04-02T13:46:39Z

134.76.70.252 at 14:16, 18 November 2013

2013-11-18T14:16:53Z

Jstuelk at 08:21, 30 July 2013

2013-07-30T08:21:09Z

Jstuelk: /* Extended information on the protein */

2013-07-30T07:58:56Z

‎Extended information on the protein

Jstuelk at 06:33, 30 July 2013

2013-07-30T06:33:03Z

Jstuelk: /* Phenotypes of a mutant */

2013-07-26T11:50:29Z

‎Phenotypes of a mutant

Jstuelk at 11:48, 26 July 2013

2013-07-26T11:48:33Z

← Older revision		Revision as of 09:07, 17 December 2014
Line 1:		Line 1:
−	* '''Description:~~''' required for cell shape determination <br/><br/>~~	+	{{#bank: RodZ}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''rodZ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ymfM ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| may be essential {{PubMed\|23879732}}~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| morphogenic protein~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| required for cell shape determination~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16910 rodZ]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RodZ RodZ]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 23 kDa, 4.679~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 639 bp, 213 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[ymfK/2]]'', ''[[pgsA]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16910 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16910 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16910 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ymfM_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ymfM_1761707_1762573_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:rodZ_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16910]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[cell shape]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU16910
−
−	~~===Phenotypes of a mutant ===~~
−	* may be essential {{PubMed\|23879732}}
−	* depletion results in the formation of shorter and rounder cells {{PubMed\|23879732}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU16910&redirect=T BSU16910]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13433]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** part of the [[cell wall biosynthetic complex]] {{PubMed\|21636744,21636745}}
−	** [[RodZ]]-[[MreD]] {{PubMed\|23879732}}
−	** [[RodZ]]-[[MreB]] {{PubMed\|23879732}}
−	** [[RodZ]]-[[MreBH]] {{PubMed\|23879732}}
−	** [[RodZ]]-[[Mbl]] {{PubMed\|23879732}}
−
−	* '''[[Localization]]:'''
−	** membrane protein (according to Swiss Prot)
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU16910&redirect=T BSU16910]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O31771 O31771]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU16910]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−	* overexpression results in growth inhibition in minimal medium (in the absence of Mg2+ ) {{PubMed\|19164570}}
−	* RodZ is destabilized in a ''[[mreB]]'' mutant {{PubMed\|23879732}}
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ymfM_1761707_1762573_1 rodZ] {{PubMed\|22383849}}
−
−	* '''Sigma factor:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−	** number of protein molecules per cell (minimal medium with glucose and ammonium): 73 {{PubMed\|24696501}}
−	** number of protein molecules per cell (complex medium with amino acids, without glucose): 497 {{PubMed\|24696501}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~[[Adriano Henriques]], Lisbon, Portugal [http://www.itqb.unl.pt/research/biology/microbial-development homepage]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>19164570, 21636744,21636745 23879732 25503291 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 153: / Line 153: @@
 =References=
-<pubmed>19164570, 21636744,21636745 23879732</pubmed>
+<pubmed>19164570, 21636744,21636745 23879732 25503291 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 09:53, 17 April 2014
Line 128:		Line 128:

	* '''Additional information:'''		* '''Additional information:'''
		+	** number of protein molecules per cell (minimal medium with glucose and ammonium): 73 {{PubMed\|24696501}}
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 497 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 59: / Line 59: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 100: / Line 101: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16910 rodZ]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RodZ RodZ]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RodZ RodZ]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 4.679

@@ Line 92: / Line 92: @@
 ** [[RodZ]]-[[MreB]] {{PubMed|23879732}}
 ** [[RodZ]]-[[MreBH]] {{PubMed|23879732}}
-** [[RodZ]]-[[Mbl {{PubMed|23879732}}
+** [[RodZ]]-[[Mbl]] {{PubMed|23879732}}
 * '''[[Localization]]:'''

@@ Line 89: / Line 89: @@
 * '''[[SubtInteract|Interactions]]:'''
 ** part of the [[cell wall biosynthetic complex]] {{PubMed|21636744,21636745}}
-* '''[[Localization]]:''' membrane protein (according to Swiss Prot)
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 103: / Line 108: @@
 === Additional information===
-overexpression results in growth inhibition in minimal medium (in the absence of Mg2+ ) {{PubMed|19164570}}
+* overexpression results in growth inhibition in minimal medium (in the absence of Mg2+ ) {{PubMed|19164570}}
 =Expression and regulation=

@@ Line 53: / Line 53: @@
 ===Phenotypes of a mutant ===
 * may be essential {{PubMed|23879732}}
 === Database entries ===

@@ Line 8: / Line 8: @@
 |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ymfM ''
 |-
-|style="background:#ABCDEF;" align="center"| '''Essential''' || no
+|style="background:#ABCDEF;" align="center"| '''Essential''' || may be essential {{PubMed|23879732}}
 |-
 |style="background:#ABCDEF;" align="center"| '''Product''' || morphogenic protein
@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
@@ Line 57: / Line 53: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 143: / Line 140: @@
 =References=
-<pubmed>19164570, 21636744,21636745</pubmed>
+<pubmed>19164570, 21636744,21636745 23879732</pubmed>
 [[Category:Protein-coding genes]]