PdaC - Revision history

Jstuelk at 10:25, 2 January 2017

2017-01-02T10:25:43Z

2014-04-02T13:27:48Z

2013-12-28T10:25:27Z

‎References

2013-05-14T09:57:20Z

2013-05-13T12:35:07Z

2012-01-27T18:26:11Z

moved YjeA to PdaC

2012-01-27T18:25:43Z

2012-01-25T08:05:51Z

2010-12-08T18:39:17Z

2010-11-30T22:04:11Z

← Older revision		Revision as of 10:25, 2 January 2017
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		+	{{#bank: pdaC}}
		+
	* '''Description:''' peptidoglycan deacetylase C <br/><br/>		* '''Description:''' peptidoglycan deacetylase C <br/><br/>

@@ Line 47: / Line 47: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 83: / Line 84: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 126: / Line 126: @@
 =References=
-<pubmed>17878218,17581128, 22277649</pubmed>
+<pubmed>17878218,17581128, 22277649 23199363</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 20: / Line 20: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotT]]'', ''[[yjfA]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12100 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12100 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yjeA_context.gif]]

@@ Line 20: / Line 20: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotT]]'', ''[[yjfA]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13067&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12100 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yjeA_context.gif]]

← Older revision	Revision as of 18:26, 27 January 2012
(No difference)

@@ Line 1: / Line 1: @@
-* '''Description:''' extracellular Dnase, peptidoglycan deacetylase <br/><br/>
+* '''Description:''' peptidoglycan deacetylase C <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || extracellular Dnase
+|style="background:#ABCDEF;" align="center"| '''Product''' || polysaccharide deacetylase C
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || degradation of DNA
+|style="background:#ABCDEF;" align="center"|'''Function''' || cell wall modification
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 53 kDa, 9.105
@@ Line 42: / Line 42: @@
 * '''Locus tag:''' BSU12100
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 54: / Line 53: @@
 === Additional information===
@@ Line 63: / Line 60: @@
 * '''Catalyzed reaction/ biological activity:'''
 * '''Protein family:''' polysaccharide deacetylase family (according to Swiss-Prot)
@@ Line 71: / Line 69: @@
 * '''Kinetic information:'''
+** K(m)=4.8 mM and k(cat)=0.32 s(-1) (toward ''B. subtilis'' peptidoglycan) {{PubMed|22277649}}
 * '''Domains:'''
@@ Line 128: / Line 126: @@
 =References=
-<pubmed>17878218,17581128,, </pubmed>
+<pubmed>17878218,17581128, 22277649</pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 08:05, 25 January 2012
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	* '''Locus tag:''' BSU12100		* '''Locus tag:''' BSU12100
		+
		+	[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjeA_1281128_1282531_1 Expression]

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===

@@ Line 30: / Line 30: @@
 <br/><br/>
 =The gene=
@@ Line 49: / Line 55: @@
-= Categories containing this gene/protein =
 =The protein=

← Older revision		Revision as of 22:04, 30 November 2010
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		+
		+	= Categories containing this gene/protein =
		+	{{SubtiWiki category\|[[cell wall/ other]]}}
	=The protein=		=The protein=