NonA - Revision history

Jstuelk at 12:49, 22 June 2014

2014-06-22T12:49:32Z

Jstuelk at 12:47, 22 June 2014

2014-06-22T12:47:38Z

Jstuelk: Created page with "* '''Description:'''

{| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''nonA'' |- |style="background:#A..."

2014-06-22T12:35:15Z

Created page with "* '''Description:''' {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''nonA'' |- |style="background:#A..."

New page

* '''Description:''' 

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''nonA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 22 kDa, 6.094
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1795 bp, 329 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yosP]]'', ''[[nrdEB]]''
|-
|colspan="2" | '''Genetic context''' [[Image:yosP_context.gif]]
<div align="right"> This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</div>
|-
|}

__TOC__
 
 
 
 

= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[SP-beta prophage]]}}

= This gene is a member of the following [[regulons]] =

=The gene=

=== Basic information ===

* '''Locus tag:''' none

===Phenotypes of a mutant ===

=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU20040&redirect=T BSU20040]

* '''DBTBS entry:''' no entry

* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13725]

=== Additional information===

=The protein=

=== Basic information/ Evolution ===

* '''Catalyzed reaction/ biological activity:'''

* '''Protein family:'''

* '''Paralogous protein(s):''' [[NrdF]]

=== Extended information on the protein ===

* '''Kinetic information:'''

* '''Domains:'''

* '''Modification:'''

* '''Cofactor(s):'''

* '''Effectors of protein activity:'''

* '''[[SubtInteract|Interactions]]:'''

* '''[[Localization]]:'''

=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU20040&redirect=T BSU20040]

* '''Structure:'''

* '''UniProt:''' [http://www.uniprot.org/uniprot/O30601 O30601]

* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU20040]

* '''E.C. number:'''

=== Additional information===

=Expression and regulation=

* '''Operon:'''

* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yosP_2159981_2161778_-1 yosP] {{PubMed|22383849}}

* '''[[Sigma factor]]:'''

* '''Regulation:'''

* '''Regulatory mechanism:'''

* '''Additional information:'''
** number of protein molecules per cell (complex medium with amino acids, without glucose): 209 {{PubMed|24696501}}
** number of protein molecules per cell (minimal medium with glucose and ammonium, exponential phase): 1955 {{PubMed|21395229}}
** number of protein molecules per cell (minimal medium with glucose and ammonium, early stationary phase after glucose exhaustion): 982 {{PubMed|21395229}}
** number of protein molecules per cell (minimal medium with glucose and ammonium, late stationary phase after glucose exhaustion): 668 {{PubMed|21395229}}

=Biological materials =
* '''Mutant:'''

* '''Expression vector:'''

* '''lacZ fusion:'''

* '''GFP fusion:'''

* '''two-hybrid system:'''

* '''Antibody:'''

=Labs working on this gene/protein=

=Your additional remarks=

=References=
<pubmed> 11470879 16621400 9465078</pubmed>
[[Category:Protein-coding genes]]

← Older revision		Revision as of 12:49, 22 June 2014
Line 1:		Line 1:
−	* '''Description:''' ~~cofers~~ resistance to infection with phage SP10<br/><br/>	+	* '''Description:''' confers resistance to infection with phage SP10<br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 1: / Line 1: @@
-* '''Description:''' <br/><br/>
+* '''Description:''' cofers resistance to infection with phage SP10<br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || inhibitor of NrdEF of phage SP10
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || protection against phage SP10
 |-
-|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 22 kDa, 6.094
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=2879 nonA]
 |-
-|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1795 bp, 329 aa
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8,465 kDa, 9.64
 |-
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yosP]]'', ''[[nrdEB]]''
@@ Line 32: / Line 34: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[SP-beta prophage]]}}
+{{SubtiWiki category|[[SP-beta prophage]]}},
 = This gene is a member of the following [[regulons]] =
@@ Line 44: / Line 48: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
-* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU20040&redirect=T BSU20040]
+* '''BsubCyc:''' no entry
 * '''DBTBS entry:''' no entry
-* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13725]
+* '''SubtiList entry:''' no entry
 === Additional information===
 =The protein=
@@ Line 65: / Line 67: @@
 * '''Protein family:'''
-* '''Paralogous protein(s):''' [[NrdF]]
+* '''Paralogous protein(s):'''
 === Extended information on the protein ===
@@ Line 82: / Line 84: @@
 * '''[[Localization]]:'''
 === Database entries ===
-* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU20040&redirect=T BSU20040]
+* '''BsubCyc:''' no entry
 * '''Structure:'''
-* '''UniProt:''' [http://www.uniprot.org/uniprot/O30601 O30601]
+* '''UniProt:''' no entry
-* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU20040]
+* '''KEGG entry:''' no entry
 * '''E.C. number:'''
@@ Line 98: / Line 101: @@
 =Expression and regulation=
-* '''Operon:'''
+* '''Operon:''' ''[[nonA]]'' {{PubMed|24272782}}
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yosP_2159981_2161778_-1 yosP] {{PubMed|22383849}}
+* '''Expression browser:''' [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=2879 nonA] {{PubMed|22383849}}
-* '''[[Sigma factor]]:'''
+* '''[[Sigma factor]]:''' Sig(ORF199-200) of phage SP10 {{PubMed|24272782}}
 * '''Regulation:'''
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
 =Biological materials =
@@ Line 132: / Line 132: @@
 =References=
-<pubmed> 11470879 16621400 9465078</pubmed>
+<pubmed> 24272782 </pubmed>
 [[Category:Protein-coding genes]]

NonA - Revision history

Jstuelk at 12:49, 22 June 2014

Jstuelk at 12:47, 22 June 2014

Jstuelk: Created page with "* '''Description:''' {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''nonA'' |- |style="background:#A..."

Jstuelk: Created page with "* '''Description:'''

{| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''nonA'' |- |style="background:#A..."