NdoAI - Revision history

Jstuelk: /* References */

2014-09-23T09:00:06Z

‎References

134.76.38.147 at 13:02, 2 April 2014

2014-04-02T13:02:12Z

134.76.70.252 at 14:14, 18 November 2013

2013-11-18T14:14:06Z

Jstuelk at 09:24, 21 October 2013

2013-10-21T09:24:17Z

Jstuelk at 09:23, 21 October 2013

2013-10-21T09:23:50Z

134.76.70.252 at 12:36, 16 May 2013

2013-05-16T12:36:13Z

134.76.70.252 at 09:31, 14 May 2013

2013-05-14T09:31:43Z

134.76.70.252 at 12:11, 13 May 2013

2013-05-13T12:11:29Z

Jstuelk: Reverted edits by Jstuelk (talk) to last revision by 134.76.70.252

2012-08-07T11:50:26Z

Reverted edits by Jstuelk (talk) to last revision by 134.76.70.252

Jstuelk: Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

2012-08-07T11:29:29Z

Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

← Older revision		Revision as of 09:00, 23 September 2014
Line 1:		Line 1:
−	* '''Description:''' antitoxin, antagonist for [[NdoA\|EndoA]] <br/><br/>	+	{{#bank: NdoAI}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''ndoAI''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ydcD, mazE''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| antitoxin~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| inhibition of [[NdoA]]~~
−	\|-
−	~~\|colspan="2" style="background:~~#~~FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http~~:~~//subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04650 ndoAI]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=NdoAI ~~NdoAI]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 10 kDa, 6.138~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 279 bp, 93 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[alr]]'', ''[[ndoA]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04650 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04650 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04650 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ydcD_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=endB_518657_518938_1 Expression at a glance]'''   {{PubMed\|22383849~~}~~}<br/>[[Image:ndoAI_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04650]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[toxins, antitoxins and immunity against toxins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU04650
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU04650&redirect=T BSU04650]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12091]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' mazE/ndoAI family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[NdoA]](2)-[[NdoAI]](2)-[[NdoA]](2) {{PubMed\|24120662,17416361}}
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU04650&redirect=T BSU04650]
−
−	* '''Structure:'''
−	** [http://www.rcsb.org/pdb/explore.do?structureId=4ME7 4ME7] ([[NdoA]]-[[NdoAI]] complex) {{PubMed\|24120662}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P96621 P96621]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU04650]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[ndoAI]]-[[ndoA]]'' {{PubMed\|15882409}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=endB_518657_518938_1 ndoAI] {{PubMed\|22383849}}
−
−	* '''Sigma factor:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>17416361,15882409,24120662, </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 53: / Line 53: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 91: / Line 92: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 15: / Line 15: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04650 ndoAI]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/NdoAI NdoAI]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=NdoAI NdoAI]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 10 kDa, 6.138

@@ Line 5: / Line 5: @@
 |''ndoAI''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ydcD''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ydcD, mazE''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no

@@ Line 1: / Line 1: @@
+* '''Description:''' antitoxin, antagonist for [[NdoA|EndoA]] <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
@@ Line 37: / Line 36: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 91: / Line 86: @@
 * '''[[SubtInteract|Interactions]]:'''
-** [[NdoAI]]-[[NdoA|EndoA]] {{PubMed|17416361}}
+** [[NdoA]](2)-[[NdoAI]](2)-[[NdoA]](2) {{PubMed|24120662,17416361}}
 * '''[[Localization]]:'''
@@ Line 98: / Line 93: @@
 * '''Structure:'''
 * '''UniProt:''' [http://www.uniprot.org/uniprot/P96621 P96621]
@@ Line 141: / Line 137: @@
 =References=
-<pubmed>17416361,15882409,, </pubmed>
+<pubmed>17416361,15882409,24120662, </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=endB_518657_518938_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ndoAI_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=endB_518657_518938_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ndoAI_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04650]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[alr]]'', ''[[ndoA]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04650 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04650 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04650 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04650 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04650 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04650 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ydcD_context.gif]]

@@ Line 1: / Line 1: @@
-* '''Description:''' antitoxin, inhibits [[NdoA|EndoA]] <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || inhibition of [[NdoA]]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/NdoAI NdoAI]
@@ Line 26: / Line 28: @@
 |colspan="2" | '''Genetic context''' <br/> [[Image:ydcD_context.gif]]
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
 |}
 __TOC__
 <br/><br/>
@@ Line 100: / Line 110: @@
 * '''Operon:''' ''[[ndoAI]]-[[ndoA]]'' {{PubMed|15882409}}
 * '''Sigma factor:'''
@@ Line 107: / Line 119: @@
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
 =Biological materials =