GerKD - Revision history

Jstuelk at 18:35, 30 April 2013

2013-04-30T18:35:07Z

Jstuelk: /* This gene is a member of the following regulons */

2013-04-30T18:33:07Z

‎This gene is a member of the following regulons

Jstuelk at 18:31, 30 April 2013

2013-04-30T18:31:51Z

Jstuelk: Jstuelk moved page YczF to GerKD: 23625846

2013-04-30T18:25:36Z

Jstuelk moved page YczF to GerKD: 23625846

Jstuelk at 17:58, 10 January 2013

2013-01-10T17:58:42Z

Nils at 09:54, 21 November 2012

2012-11-21T09:54:55Z

134.76.70.252 at 09:43, 8 August 2012

2012-08-08T09:43:33Z

134.76.70.252 at 08:53, 8 August 2012

2012-08-08T08:53:13Z

134.76.70.252 at 15:35, 7 August 2012

2012-08-07T15:35:26Z

Jstuelk: Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

2012-08-07T11:20:12Z

Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

← Older revision		Revision as of 18:35, 30 April 2013
Line 1:		Line 1:
−	* '''Description:~~''' D protein for the [[GerKA]]-[[GerKB]]-[[GerKC]] germinant receptor <br/><br/>~~	+	{{#bank: GerKD}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''gerKD''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yczF ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| D protein for the [[GerKA]]-[[GerKB]]-[[GerKC]] germinant receptor~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| [[germination]]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03690 gerKD]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 8 kDa, 10.011~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 219 bp, 73 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yclG]]'', ''[[gerKA]]''~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB12177]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yczF_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yczF_419763_419984_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yczF_expression.png\|500px]]~~
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}},~~
−	~~{{SubtiWiki category\|[[germination]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigG regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU03690
−
−	~~===Phenotypes of a mutant ===~~
−	* faster [[germination]] with the AGFK germinant mixture {{PubMed\|23625846}}
−	* higher sensitivity to AGFK germinants ([[germination]] at lower concentrations) {{PubMed\|23625846}}
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12780]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O31479 O31479]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU03690]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[gerKD]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yczF_419763_419984_-1 gerKD] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigG]] {{PubMed\|23625846}}
−
−	* '''Regulation:'''
−	** expressed during [[sporulation]] in the forespore ([[SigG]]) {{PubMed\|23625846}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 23625846 22383849</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 44: / Line 44: @@
 = This gene is a member of the following [[regulons]] =
+{{SubtiWiki regulon|[[SigG regulon]]}}
 =The gene=

@@ Line 1: / Line 1: @@
-* '''Description:''' unknown <br/><br/>
+* '''Description:''' D protein for the [[GerKA]]-[[GerKB]]-[[GerKC]] germinant receptor <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''yczF''
+|''gerKD''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yczF ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || D protein for the [[GerKA]]-[[GerKB]]-[[GerKC]] germinant receptor
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03690 yczF]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03690 gerKD]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 10.011
@@ Line 41: / Line 41: @@
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[membrane proteins]]}},
-{{SubtiWiki category|[[sporulation proteins]]}}
+{{SubtiWiki category|[[germination]]}}
 = This gene is a member of the following [[regulons]] =
@@ Line 53: / Line 53: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 61: / Line 63: @@
 === Additional information===
@@ Line 106: / Line 106: @@
 =Expression and regulation=
-* '''Operon:'''
+* '''Operon:''' ''[[gerKD]]'' {{PubMed|22383849}}
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yczF_419763_419984_-1 yczF] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yczF_419763_419984_-1 gerKD] {{PubMed|22383849}}
-* '''[[Sigma factor]]:'''
+* '''[[Sigma factor]]:''' [[SigG]] {{PubMed|23625846}}
 * '''Regulation:'''
 * '''Regulatory mechanism:'''
@@ Line 137: / Line 138: @@
 =References=
+ <pubmed> 23625846 22383849</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[membrane proteins]]}},
 {{SubtiWiki category|[[sporulation proteins]]}}
@@ Line 115: / Line 110: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yczF_419763_419984_-1 yczF] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''

@@ Line 45: / Line 45: @@
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[membrane proteins]]}},
-{{SubtiWiki category|[[proteins of unknown function]]}}
+{{SubtiWiki category|[[proteins of unknown function]]}},
 = This gene is a member of the following [[regulons]] =

← Older revision	Revision as of 18:25, 30 April 2013
(No difference)

@@ Line 26: / Line 26: @@
 |colspan="2" | '''Genetic context''' <br/> [[Image:yczF_context.gif]]
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
 |}
 __TOC__
 <br/><br/><br/><br/>