GerAA - Revision history

Jstuelk: /* References */

2014-11-14T15:23:40Z

‎References

Jstuelk: /* References */

2014-06-12T09:15:03Z

‎References

Jstuelk at 05:10, 25 April 2014

2014-04-25T05:10:16Z

134.76.38.147 at 14:43, 2 April 2014

2014-04-02T14:43:07Z

134.76.70.252 at 09:20, 12 November 2013

2013-11-12T09:20:16Z

Jstuelk: /* References */

2013-06-12T10:57:47Z

‎References

Jstuelk: /* References */

2013-06-12T10:51:46Z

‎References

Jstuelk at 10:47, 12 June 2013

2013-06-12T10:47:59Z

134.76.70.252 at 14:31, 16 May 2013

2013-05-16T14:31:57Z

134.76.70.252 at 11:14, 14 May 2013

2013-05-14T11:14:14Z

← Older revision		Revision as of 15:23, 14 November 2014
Line 1:		Line 1:
−	* '''Description:~~''' nutrient receptor, [[germination]] response to L-alanine <br/><br/>~~	+	{{#bank: GerAA}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''gerAA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| nutrient receptor~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| [[germination]] response to L-alanine~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33050 gerAA]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=GerAA GerAA]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 53 kDa, 8.801~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1446 bp, 482 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yvzF]]'', ''[[gerAB]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33050 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33050 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33050 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:gerAA_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerAA_3390782_3392230_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:gerAA_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33050]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[germination]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigF regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigG regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SpoVT regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU33050
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU33050&redirect=T BSU33050]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/gerAABC.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10385]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' gerABKA family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−	** contains multiple membrane-spanning domains {{PubMed\|23335419}}
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[GerAA]]-[[GerAB]]-[[GerAC]] (tentative receptor complex) {{PubMed\|21378181,21378197}}
−	** [[GerAA]] is part of the [[germinosome]] in the spore inner membrane {{PubMed\|21696470}}
−
−	* '''[[Localization]]:'''
−	** outer surface of the inner spore membrane {{PubMed\|23335419,21696470}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU33050&redirect=T BSU33050]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P07868 P07868]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU33050]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−	* 1,100 molecules are present per spore {{PubMed\|23749970}}
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[gerAA]]-[[gerAB]]-[[gerAC]]'' {{PubMed\|3110007}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerAA_3390782_3392230_1 gerAA] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigG]] {{PubMed\|15699190}}, [[SigF]] {{PubMed\|16497325}}
−
−	* '''Regulation:'''
−	** expressed during sporulation in the forespore ([[SigF]], [[SigG]], [[SpoVT]]) {{PubMed\|16497325,15699190,8755877}}
−	** expression level depends on sporulation conditions (medim composition, temperature) {{PubMed\|22327596}}
−
−	* '''Regulatory mechanism:'''
−	** [[SpoVT]]: transcription repression {{PubMed\|8755877}}
−
−	* '''Additional information:'''
−	** 1,100 molecules are present per spore {{PubMed\|23749970}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 3110007,17573930,12670969,2110996,15774895,16497325,,16352818,8755877 21378181,21378197 21696470 22327596 22493018 22343299,16740944 23335419 23396907 24752279 23749970 24916603 </pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 145: / Line 145: @@
 =References=
-<pubmed> 3110007,17573930,12670969,2110996,15774895,16497325,,16352818,8755877 21378181,21378197 21696470 22327596 22493018 22343299,16740944 23335419 23396907 24752279 23749970</pubmed>
+<pubmed> 3110007,17573930,12670969,2110996,15774895,16497325,,16352818,8755877 21378181,21378197 21696470 22327596 22493018 22343299,16740944 23335419 23396907 24752279 23749970 24916603 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 79: / Line 79: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 ** contains multiple membrane-spanning domains {{PubMed|23335419}}
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 145: / Line 145: @@
 =References=
-<pubmed> 23749970 </pubmed>
+<pubmed> 3110007,17573930,12670969,2110996,15774895,16497325,,16352818,8755877 21378181,21378197 21696470 22327596 22493018 22343299,16740944 23335419 23396907 24752279 23749970</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 57: / Line 57: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/gerAABC.html]
@@ Line 95: / Line 96: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33050 gerAA]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/GerAA GerAA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=GerAA GerAA]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 53 kDa, 8.801

@@ Line 143: / Line 143: @@
 =References=
-<pubmed>23749970</pubmed>
+<pubmed> 23749970 </pubmed>
-<pubmed> 3110007,17573930,12670969,2110996,15774895,16497325,,16352818,8755877 21378181,21378197 21696470 22327596 22493018 22343299,16740944 23335419 23396907</pubmed>
+<pubmed> 3110007,17573930,12670969,2110996,15774895,16497325,,16352818,8755877 21378181,21378197 21696470 22327596 22493018 22343299,16740944 23335419 23396907 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 105: / Line 105: @@
 === Additional information===
 =Expression and regulation=
@@ Line 121: / Line 122: @@
 * '''Additional information:'''
 =Biological materials =
@@ Line 141: / Line 143: @@
 =References=
-'''Additional publications:''' {{PubMed|22343299,16740944}}
+<pubmed> 3110007,17573930,12670969,2110996,15774895,16497325,,16352818,8755877 21378181,21378197 21696470 22327596 22493018 22343299,16740944 23749970 23335419 23396907 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerAA_3390782_3392230_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:gerAA_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerAA_3390782_3392230_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:gerAA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33050]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvzF]]'', ''[[gerAB]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33050 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33050 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33050 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33050 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33050 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33050 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:gerAA_context.gif]]