EfeO - Revision history

134.76.70.252 at 11:24, 17 April 2014

2014-04-17T11:24:53Z

134.76.70.252 at 11:45, 8 April 2014

2014-04-08T11:45:58Z

Jstuelk at 16:29, 21 June 2013

2013-06-21T16:29:34Z

Jstuelk: Jstuelk moved page YwbM to EfeO: 23764491

2013-06-21T15:55:52Z

Jstuelk moved page YwbM to EfeO: 23764491

134.76.70.252 at 14:54, 16 May 2013

2013-05-16T14:54:26Z

134.76.70.252 at 11:36, 14 May 2013

2013-05-14T11:36:09Z

134.76.70.252 at 14:10, 13 May 2013

2013-05-13T14:10:44Z

Jstuelk at 10:29, 30 November 2012

2012-11-30T10:29:34Z

134.76.70.252 at 17:15, 7 August 2012

2012-08-07T17:15:45Z

134.76.70.252 at 11:52, 23 April 2012

2012-04-23T11:52:03Z

← Older revision		Revision as of 11:24, 17 April 2014
Line 125:		Line 125:

	* '''Additional information:'''		* '''Additional information:'''
		+	** number of protein molecules per cell (minimal medium with glucose and ammonium): 1047 {{PubMed\|24696501}}
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 2113 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 18: / Line 18: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/EfeO EfeO]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in  [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=EfeO EfeO]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 4.712

@@ Line 1: / Line 1: @@
-* '''Description:''' elemental iron uptake system (permease) <br/><br/>
+* '''Description:''' lipoprotein, elemental iron uptake system (binding protein), high affinity uptake of ferric iron (Fe(III))  <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || elemental iron uptake system (permease)
+|style="background:#ABCDEF;" align="center"| '''Product''' || elemental iron uptake system (binding protein)
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || iron uptake
+|style="background:#ABCDEF;" align="center"|'''Function''' || elemental iron uptake
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38270 ywbM]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38270 efeO]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YwbM YwbM]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/EfeO EfeO]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1155 bp, 385 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywbN]]'', ''[[ywbL]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[efeB]]'', ''[[efeU]]''
 |-
 |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38270 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38270 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38270 DNA_with_flanks]
@@ Line 74: / Line 74: @@
 * '''Catalyzed reaction/ biological activity:'''
 * '''Protein family:''' UPF0409 family (according to Swiss-Prot)
@@ Line 92: / Line 93: @@
 * '''[[SubtInteract|Interactions]]:'''
-** ([[YwbL]]-[[YwbM]])-[[YwbN]] {{PubMed|23180473}}
+** [[EfeO]]-[[EfeU]]-[[EfeB]] {{PubMed|23180473,23764491}}
 * '''[[Localization]]:'''
 ** membrane [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
+** extracytosolic lipoprotein {{PubMed|23764491}}
 === Database entries ===
@@ Line 111: / Line 112: @@
 =Expression and regulation=
 * '''Operon:'''
-** ''[[ywbL]]-[[ywbM]]-[[ywbN]]'' {{PubMed|9353933}}
+** ''[[efeU]]-[[efeO]]-[[efeB]]'' {{PubMed|9353933}}
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=efeM_3927951_3929108_-1 ywbM] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=efeM_3927951_3929108_-1 efeO] {{PubMed|22383849}}
-* '''[[Sigma factor]]:'''
+* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|23764491}}
 * '''Regulation:'''
@@ Line 145: / Line 146: @@
 =References=
-<pubmed>16672620,9353933,12354229,18763711, 23180473</pubmed>
+<pubmed>16672620,9353933,12354229,18763711, 23180473 23764491</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 31: / Line 31: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=efeM_3927951_3929108_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ywbM_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=efeM_3927951_3929108_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ywbM_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38270]]
 |-
 |}

@@ Line 26: / Line 26: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywbN]]'', ''[[ywbL]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38270 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38270 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38270 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38270 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38270 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38270 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ywbM_context.gif]]

← Older revision	Revision as of 15:55, 21 June 2013
(No difference)