DtpT - Revision history

Jstuelk at 09:00, 30 July 2015

2015-07-30T09:00:07Z

Jstuelk: /* Expression and regulation */

2015-05-15T13:14:24Z

‎Expression and regulation

Jstuelk: /* Expression and regulation */

2015-05-15T13:13:08Z

‎Expression and regulation

Jstuelk: /* Expression and regulation */

2015-05-15T13:05:37Z

‎Expression and regulation

Jstuelk at 13:03, 15 May 2015

2015-05-15T13:03:55Z

Jstuelk: Jstuelk moved page YclF to DtpT: 25966844

2015-05-15T13:02:24Z

Jstuelk moved page YclF to DtpT: 25966844

Jstuelk at 11:58, 26 November 2014

2014-11-26T11:58:47Z

Julian at 12:55, 24 April 2014

2014-04-24T12:55:55Z

Julian at 11:10, 24 April 2014

2014-04-24T11:10:20Z

Julian at 11:24, 22 April 2014

2014-04-22T11:24:45Z

← Older revision		Revision as of 09:00, 30 July 2015
Line 1:		Line 1:
−	* '''Description:~~''' proton-dependent di- and tripeptide transporter <br/><br/>~~	+	{{#bank: DtpT}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''dtpT''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yclF ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| peptide transporter~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| uptake of di- and tripeptides~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03670 dtpT]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 53 kDa, 9.92~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1476 bp, 492 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yclE]]'', ''[[yclG]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03670 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03670 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03670 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yclF_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dtpT_416235_417713_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yclF_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03670]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transporters/ other]]}},~~
−	~~{{SubtiWiki category\|[[utilization of nitrogen sources other than amino acids]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}},~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[ScoC regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU03670
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU03670&redirect=T BSU03670]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12027]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' POT family of secondary (PMF-dependent) transporters
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU03670&redirect=T BSU03670]
−
−	* '''Structure:'''
−	** [http://www.pdb.org/pdb/explore/explore.do?structureId=4ikv 4IKV], the protein from ''Geobacillus kaustophilus'' (65% identity, 87% similarity), {{PubMed\|23798427}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P94408 P94408]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU03670]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[dtpT]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dtpT_416235_417713_-1 dtpT] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|25966844}}
−
−	* '''Regulation:'''
−	** repressed during exponential growth ([[ScoC]]) {{PubMed\|25966844,11717292}}
−
−	* '''Regulatory mechanism:'''
−	** [[ScoC]]: transcription repression {{PubMed\|25966844,11717292}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>11717292, 8458848 23798427 25966844</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 116: / Line 116: @@
 * '''Regulation:'''
-** repressed during exponential growth ([[ScoC]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/11717292 PubMed]
+** repressed during exponential growth ([[ScoC]]) {{PubMed|25966844,11717292}}
 * '''Regulatory mechanism:'''
-** [[ScoC]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/11717292 PubMed]
+** [[ScoC]]: transcription repression {{PubMed|25966844,11717292}}
 * '''Additional information:'''

@@ Line 113: / Line 113: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dtpT_416235_417713_-1 dtpT] {{PubMed|22383849}}
-* '''[[Sigma factor]]:'''
+* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|25966844}}
 * '''Regulation:'''

@@ Line 109: / Line 109: @@
 =Expression and regulation=
-* '''Operon:'''
+* '''Operon:''' ''[[dtpT]]'' {{PubMed|22383849}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dtpT_416235_417713_-1 dtpT] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''

@@ Line 4: / Line 4: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''yclF''
+|''dtpT''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' dtpT''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yclF ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || uptake of di- and tripeptides
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03670 yclF]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03670 dtpT]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 53 kDa, 9.92
@@ Line 111: / Line 111: @@
 * '''Operon:'''
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dtpT_416235_417713_-1 yclF] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dtpT_416235_417713_-1 dtpT] {{PubMed|22383849}}
 * '''Sigma factor:'''
@@ Line 143: / Line 143: @@
 =References=
-<pubmed>11717292, 8458848 23798427 </pubmed>
+<pubmed>11717292, 8458848 23798427 25966844</pubmed>
 [[Category:Protein-coding genes]]

← Older revision	Revision as of 13:02, 15 May 2015
(No difference)

@@ Line 1: / Line 1: @@
-* '''Description:''' peptide transporter  <br/><br/>
+* '''Description:''' proton-dependent di- and tripeptide transporter  <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 97: / Line 97: @@
 * '''Structure:'''
 * '''UniProt:''' [http://www.uniprot.org/uniprot/P94408 P94408]
@@ Line 142: / Line 143: @@
 =References=
-<pubmed>11717292, 8458848 </pubmed>
+<pubmed>11717292, 8458848 23798427 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 43: / Line 43: @@
 {{SubtiWiki category|[[utilization of nitrogen sources other than amino acids]]}},
 {{SubtiWiki category|[[membrane proteins]]}},
-{{SubtiWiki category|[[Sporulation#Sporulation_proteins/_other|sporulation proteins]]}}
+{{SubtiWiki category|[[sporulation proteins]]}}
 = This gene is a member of the following [[regulons]] =