CsbB - Revision history

134.76.38.147 at 13:14, 2 April 2014

2014-04-02T13:14:44Z

Jstuelk at 19:03, 15 September 2013

2013-09-15T19:03:54Z

134.76.70.252 at 12:49, 16 May 2013

2013-05-16T12:49:15Z

134.76.70.252 at 09:45, 14 May 2013

2013-05-14T09:45:12Z

134.76.70.252 at 12:23, 13 May 2013

2013-05-13T12:23:51Z

Jstuelk at 18:14, 6 May 2013

2013-05-06T18:14:48Z

Raphael2215 at 09:14, 13 August 2012

2012-08-13T09:14:48Z

134.76.70.252 at 16:07, 6 August 2012

2012-08-06T16:07:01Z

134.76.70.252 at 16:18, 18 April 2012

2012-04-18T16:18:25Z

134.76.70.252 at 16:28, 12 April 2012

2012-04-12T16:28:45Z

← Older revision		Revision as of 13:14, 2 April 2014
Line 1:		Line 1:
−	* '''Description:''' putative bactoprenol glycosyltransferase, general stress protein, required for protection against paraquat stress <br/><br/>	+	{{#bank: CsbB}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''csbB''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yfhN ''~~
−	\|-
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| putative bactoprenol glycosyltransferase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| survival of stress conditions~~
−	\|-
−	~~\|colspan="2" style="background:~~#~~FAF8CC;" align="center"\| '''Gene expression levels in [http~~:~~//subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08600 csbB]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 37 kDa, 9.199~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 987 bp, 329 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yfhM]]'', ''[[yfhO]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08600 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08600 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08600 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:csbB_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=csbB_930818_931807_1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:csbB_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08600]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[general stress proteins (controlled by SigB)]]}},~~
−	~~{{SubtiWiki category\|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}},~~
−	~~{{SubtiWiki category\|[[resistance against oxidative and electrophile stress]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigB regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigX regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU08600
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/csbB.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11834]
−
−	~~=== Additional information===~~
−	* expression of [[CsbB]] in the absence of [[YfhO]] causes constitutive activation of [[SigM]] {{PubMed\|23632331}}
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' GtrB subfamily (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/Q45539 Q45539]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU08600]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[csbB]]'' {{PubMed\|8921856}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=csbB_930818_931807_1 csbB] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigB]] {{PubMed\|8921856,9636707}}, [[SigX]] {{PubMed\|9636707}}
−
−	* '''Regulation:''' induced by stress ([[SigB]]) {{PubMed\|8921856,15805528,9636707}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>8921856,9636707,23632331,15805528, 22582280</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 1: / Line 1: @@
-* '''Description:''' putative bactoprenol glycosyltransferase, general stress protein <br/><br/>
+* '''Description:''' putative bactoprenol glycosyltransferase, general stress protein, required for protection against paraquat stress  <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Product''' || putative bactoprenol glycosyltransferase
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol and salt stress
+|style="background:#ABCDEF;" align="center"|'''Function''' || survival of stress conditions
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08600 csbB]
@@ Line 38: / Line 38: @@
 {{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}},
 {{SubtiWiki category|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}},
 {{SubtiWiki category|[[membrane proteins]]}}
@@ Line 134: / Line 135: @@
 =References=
-<pubmed>8921856,9636707,23632331,15805528, </pubmed>
+<pubmed>8921856,9636707,23632331,15805528, 22582280</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 25: / Line 25: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=csbB_930818_931807_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:csbB_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=csbB_930818_931807_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:csbB_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08600]]
 |-
 |}

@@ Line 20: / Line 20: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfhM]]'', ''[[yfhO]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08600 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08600 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08600 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08600 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08600 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08600 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:csbB_context.gif]]

@@ Line 12: / Line 12: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol and salt stress
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU08600 csbB]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08600 csbB]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 37 kDa, 9.199
@@ Line 20: / Line 20: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfhM]]'', ''[[yfhO]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12688&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08600 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08600 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08600 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:csbB_context.gif]]

@@ Line 1: / Line 1: @@
-* '''Description:''' general stress protein <br/><br/>
+* '''Description:''' putative bactoprenol glycosyltransferase, general stress protein <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
@@ Line 6: / Line 6: @@
 |-
 |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yfhN ''
 |-
-|style="background:#ABCDEF;" align="center"| '''Essential''' || no
+|style="background:#ABCDEF;" align="center"| '''Product''' || putative bactoprenol glycosyltransferase
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol and salt stress
@@ Line 34: / Line 33: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 64: / Line 59: @@
 === Additional information===
+* expression of [[CsbB]] in the absence of [[YfhO]] causes constitutive activation of [[SigM]] {{PubMed|23632331}}
 =The protein=
@@ Line 113: / Line 106: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=csbB_930818_931807_1 csbB] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigB]] {{PubMed|8921856,9636707}}, [[SigX]] {{PubMed|9636707}}
+* '''[[Sigma factor]]:''' [[SigB]] {{PubMed|8921856,9636707}}, [[SigX]] {{PubMed|9636707}}
 * '''Regulation:'''  induced by stress ([[SigB]]) {{PubMed|8921856,15805528,9636707}}
@@ Line 141: / Line 134: @@
 =References=
-<pubmed>8921856,9636707,,15805528, </pubmed>
+<pubmed>8921856,9636707,23632331,15805528, </pubmed>
 [[Category:Protein-coding genes]]