CmpA - Revision history

Jstuelk at 11:11, 24 September 2015

2015-09-24T11:11:02Z

134.76.38.147 at 15:22, 2 April 2014

2014-04-02T15:22:28Z

Jstuelk at 16:57, 11 April 2012

2012-04-11T16:57:06Z

Jstuelk: /* Extended information on the protein */

2012-04-11T16:55:05Z

‎Extended information on the protein

Jstuelk: /* References */

2012-04-11T16:53:55Z

‎References

Jstuelk at 16:53, 11 April 2012

2012-04-11T16:53:25Z

Jstuelk at 16:39, 11 April 2012

2012-04-11T16:39:48Z

Jstuelk: Created page with "* '''Description:''' spore coat protein

{| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''cmpA'' |- |styl..."

2012-04-11T16:34:44Z

Created page with "* '''Description:''' spore coat protein {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''cmpA'' |- |styl..."

New page

* '''Description:''' spore coat protein 

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''cmpA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || cortex morphogenetic protein A
|-
|style="background:#ABCDEF;" align="center"|'''Function''' ||
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' ||
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 111 bp, 37 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydcI]]'', ''[[ydcK]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2012.08052.x/pdf sequences] (Ebmeier ''et al.'', 2012)'''
|-
|colspan="2" | '''Genetic context''' 
<div align="right"> 
|-
|}

__TOC__

 

= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[sporulation proteins]]}}

= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigE regulon]]}},
{{SubtiWiki regulon|[[SigK regulon]]}}

=The gene=

=== Basic information ===

* '''Locus tag:''' BSU17030

===Phenotypes of a mutant ===

=== Database entries ===

* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cotE.html]

* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10494]

=== Additional information===

=The protein=

=== Basic information/ Evolution ===

* '''Catalyzed reaction/ biological activity:''' assembly of the [[CotC]]-[[CotU]] complex {{PubMed|20023017,18065538}}

* '''Protein family:''' cotE family (according to Swiss-Prot)

* '''Paralogous protein(s):'''

=== Extended information on the protein ===

* '''Kinetic information:'''

* '''Domains:'''

* '''Modification:'''

* '''Cofactor(s):'''

* '''Effectors of protein activity:'''

* '''[[SubtInteract|Interactions]]:'''
** homotypic interaction [http://www.ncbi.nlm.nih.gov/sites/entrez/19304857 PubMed]
** [[CotE]]-[[CotC]] {{PubMed|20023017}}
** [[CotE]]-[[CotU]] {{PubMed|20023017}}

* '''[[Localization]]:'''
** encircles the forespore with a biased accumulation on the mother cell-proximal face of the forespore {{PubMed|22463703}}
=== Database entries ===

* '''Structure:'''

* '''UniProt:''' [http://www.uniprot.org/uniprot/P14016 P14016]

* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU17030]

* '''E.C. number:'''

=== Additional information===

=Expression and regulation=

* '''Operon:''' ''[[cotE]]'' {{PubMed|8760914}}

* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190,1691789}}, [[SigK]] {{PubMed|1691789}}

* '''Regulation:'''
** repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
** expressed during sporulation in the mother cell ([[SigE]], [[SigK]]) {{PubMed|1691789}}

* '''Regulatory mechanism:'''

* '''Additional information:'''

=Biological materials =

* '''Mutant:'''

* '''Expression vector:'''

* '''lacZ fusion:'''

* '''GFP fusion:'''

* '''two-hybrid system:'''

* '''Antibody:'''

=Labs working on this gene/protein=

[[Arthur Aronson]], Purdue University, West Lafayette, USA [http://wwwdev.gradschool.purdue.edu/PULSe/faculty.cfm?fid=5&range=0 homepage]

[[Adriano Henriques]], Lisbon, Portugal [http://www.itqb.unl.pt/research/biology/microbial-development homepage]

=Your additional remarks=

=References=
'''Additional publications:''' {{PubMed|22463703,21821751}}
<pubmed>8748030,17720779,10559171 8760914 15699190 7592342,3139490, 8299942,1691789, 12644503, 17172339,19304857,11737650 ,12107147, 20023017 18065538 </pubmed>

[[Category:Protein-coding genes]]

← Older revision		Revision as of 11:11, 24 September 2015
Line 1:		Line 1:
		+	{{#bank: cmpA}}
		+
	* '''Description:''' spore coat protein, inhibits sporulation, required for proper spore coat assembly <br/><br/>		* '''Description:''' spore coat protein, inhibits sporulation, required for proper spore coat assembly <br/><br/>

← Older revision		Revision as of 16:57, 11 April 2012
Line 1:		Line 1:
−	* '''Description:''' spore coat protein <br/><br/>	+	* '''Description:''' spore coat protein, inhibits sporulation, required for proper spore coat assembly <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 81: / Line 81: @@
 * '''[[Localization]]:'''
-** surface of the developing spore  {{PubMed|22463703}}
+** surface of the developing forespore  {{PubMed|22463703}}
 === Database entries ===

@@ Line 129: / Line 129: @@
 =References=
-'''Additional publications:''' {{PubMed|22463703}}
+'''Additional publications:''' {{PubMed|22463703,20709900}}
-<pubmed>20709900</pubmed>
+<pubmed></pubmed>
 [[Category:Protein-coding genes]]

@@ Line 47: / Line 47: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 84: / Line 85: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 12: / Line 12: @@
 |style="background:#ABCDEF;" align="center"| '''Product''' || cortex morphogenetic protein A
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' ||
+|style="background:#ABCDEF;" align="center"|'''Function''' || control of spore cortex assembly
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' ||
@@ Line 60: / Line 60: @@
 * '''Catalyzed reaction/ biological activity:'''
+** orchestrates spore coat and cortex assembly {{PubMed|22463703}}
 * '''Protein family:'''
@@ Line 124: / Line 125: @@
 =Labs working on this gene/protein=
 =Your additional remarks=
 =References=
-'''Additional publications:''' {{PubMed|22463703,21821751}}
+'''Additional publications:''' {{PubMed|22463703}}
-<pubmed>8748030,17720779,10559171 8760914 15699190 7592342,3139490, 8299942,1691789, 12644503, 17172339,19304857,11737650 ,12107147, 20023017 18065538 </pubmed>
+<pubmed>20709900</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 36: / Line 36: @@
 = This gene is a member of the following [[regulons]] =
 {{SubtiWiki regulon|[[SigE regulon]]}},
-{{SubtiWiki regulon|[[SigK regulon]]}}
+{{SubtiWiki regulon|[[SpoIIID regulon]]}}
 =The gene=
@@ Line 42: / Line 42: @@
 === Basic information ===
-* '''Locus tag:''' BSU17030
+* '''Locus tag:''' not available
 ===Phenotypes of a mutant ===
@@ Line 48: / Line 48: @@
 === Database entries ===
-* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cotE.html]
+* '''DBTBS entry:''' no entry
-* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10494]
+* '''SubtiList entry:''' no entry
 === Additional information===
@@ Line 59: / Line 59: @@
 === Basic information/ Evolution ===
-* '''Catalyzed reaction/ biological activity:''' assembly of the [[CotC]]-[[CotU]] complex {{PubMed|20023017,18065538}}
+* '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:''' cotE family (according to Swiss-Prot)
+* '''Protein family:'''
 * '''Paralogous protein(s):'''
@@ Line 78: / Line 78: @@
 * '''[[SubtInteract|Interactions]]:'''
 * '''[[Localization]]:'''
-** encircles the forespore with a biased accumulation on the mother cell-proximal face of the forespore  {{PubMed|22463703}}
+** surface of the developing spore  {{PubMed|22463703}}
 === Database entries ===
 * '''Structure:'''
-* '''UniProt:''' [http://www.uniprot.org/uniprot/P14016 P14016]
+* '''UniProt:'''
-* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU17030]
+* '''KEGG entry:'''
 * '''E.C. number:'''
@@ Line 98: / Line 96: @@
 =Expression and regulation=
-* '''Operon:''' ''[[cotE]]'' {{PubMed|8760914}}
+* '''Operon:''' ''[[cmpA]]'' {{PubMed|22463703}}
-* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190,1691789}}, [[SigK]] {{PubMed|1691789}}
+* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|22463703}}
 * '''Regulation:'''
-** repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
+** expressed early during sporulation in the mother cell ([[SigE]]) {{PubMed|22463703}}
 * '''Regulatory mechanism:'''
 * '''Additional information:'''