SubtiWiki - User contributions [en]

Easter egg

2012-03-11T15:12:41Z

Lflorez:

{{RegulonTable|
Regulator=[[CodY]]
}}

[[File:NewExample.jpg]]

Easter egg

2012-03-11T15:12:23Z

Lflorez:

{{RegulonTable|
Regulator=[[CodY]]
}}

[[File:Example.jpg]]

Eno

2011-09-10T20:39:16Z

Lflorez: Undo revision 145904 by Lflorez (talk)

* '''Description:''' enolase, glycolytic/ gluconeogenic enzyme, [[universally conserved protein]] 

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''eno''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || enolase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || enzyme in glycolysis/ gluconeogenesis
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/Eno Eno]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: [http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 46,4 kDa, 4.49
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1290 bp, 430 amino acids
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvbK]]'', ''[[pgm]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB15395]+-newId sequences] (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' [[Image:eno_context.gif]]
<div align="right"> This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</div>
|-
|}

__TOC__

 

= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[carbon core metabolism]]}},
{{SubtiWiki category|[[membrane proteins]]}},
{{SubtiWiki category|[[phosphoproteins]]}},
{{SubtiWiki category|[[universally conserved proteins]]}}

= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[CggR regulon]]}}

=The gene=

=== Basic information ===

* '''Locus tag:''' BSU33900

===Phenotypes of a mutant ===
* no growth on LB, requires glucose and malate
* essential according to Kobayashi et al. on LB [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]

=== Database entries ===

* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cggR-gapA-pgk-tpiA-pgm-eno.html]

* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10899]

=== Additional information===

=The protein=

=== Basic information/ Evolution ===

* '''Catalyzed reaction/ biological activity:''' 2-phospho-D-glycerate = phosphoenolpyruvate + H2O (according to Swiss-Prot) 2-phospho-D-glycerate = phosphoenolpyruvate + H(2)O

* '''Protein family:''' enolase family (according to Swiss-Prot)

* '''Paralogous protein(s):'''

=== Extended information on the protein ===

* '''Kinetic information:''' reversible Michaelis-Menten [http://www.ncbi.nlm.nih.gov/sites/entrez/25885 PubMed]

* '''Domains:'''
** substrate binding domain (366–369)

* '''Modification:''' phosphorylation on Thr-141 AND Ser-259 AND Tyr-281 AND Ser-325 [http://www.ncbi.nlm.nih.gov/sites/entrez/17218307 PubMed], [http://www.ncbi.nlm.nih.gov/pubmed/16493705 PubMed], [http://www.ncbi.nlm.nih.gov/pubmed/17726680 PubMed]

* '''Cofactor(s):''' Mg2+

* '''Effectors of protein activity:'''
** Inhibited by EDTA [http://www.ncbi.nlm.nih.gov/sites/entrez/25885 PubMed]

* '''[[SubtInteract|Interactions]]:'''
** part of the [[RNA degradosome]] {{PubMed|19193632}}
** [[Eno]]-[[PfkA]] {{PubMed|19193632}}
** [[Eno]]-[[Rny]] {{PubMed|19193632,21803996}}
** [[Eno]]-[[CshA]] {{PubMed|20572937}}

* '''[[Localization]]:'''
** cytoplasm [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
** membrane associated [http://www.ncbi.nlm.nih.gov/sites/entrez/18763711 PubMed]
** exported, this requires a long, unbent α-helix (from A108 to L126) {{PubMed|15003462,21856851}}

=== Database entries ===

* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1W6T 1W6T] (from ''Streptococcus pneumoniae'') {{PubMed|15476816}}

* '''UniProt:''' [http://www.uniprot.org/uniprot/P37869 P37869]

* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU33900]

* '''E.C. number:''' [http://www.expasy.org/enzyme/4.2.1.11 4.2.1.11]

=== Additional information===
* Enolase is a [[moonlighting proteins|moonlighting protein]]. [http://www.ncbi.nlm.nih.gov/sites/entrez/19193632 PubMed]
* There are indications that this enzyme is an octamer [http://www.ncbi.nlm.nih.gov/sites/entrez/25885 PubMed]
* [[universally conserved protein]]
* extensive information on the structure and enzymatic properties of Eno can be found at [http://www.proteopedia.org/wiki/index.php/Enolase Proteopedia]

=Expression and regulation=

* '''Operon:'''
** ''[[cggR]]-[[gapA]]-[[pgk]]-[[tpiA]]-[[pgm]]-[[eno]]'' {{PubMed|11489127}}
** ''[[pgk]]-[[tpiA]]-[[pgm]]-[[eno]]'' {{PubMed|11489127}}

* '''Sigma factor:''' [[SigA]] {{PubMed|11489127}}

* '''Regulation:'''
** expression activated by glucose (3.3 fold) [http://www.ncbi.nlm.nih.gov/pubmed/12850135 PubMed]
** ''[[cggR]]'': induced by glycolytic substrates [[CggR]] {{PubMed|11489127}}
** ''[[pgk]]'': constitutive {{PubMed|11489127}}

* '''Regulatory mechanism:''' transcription repression by [[CggR]] {{PubMed|11489127}}

* '''Additional information:'''

=Biological materials =

* '''Mutant:'''
** GP594 (''eno''::''cat''), available in [[Stülke]] lab
** GP599 (''eno''::''erm''), available in [[Stülke]] lab
** GP698 (''eno''-''[[pgm]]''::''cat''), available in [[Stülke]] lab

* '''Expression vector:'''
** pGP1426 (expression of ''[[eno]]'' in ''B. subtilis'', in [[pBQ200]]), available in [[Stülke]] lab
** pGP1500 (expression of ''[[pgm]]'' and ''[[eno]]'' in ''B. subtilis'', in [[pBQ200]]), available in [[Stülke]] lab
** pGP563 (N-terminal His-tag, in [[pWH844]]), available in [[Stülke]] lab
** pGP1276 (N-terminal Strep-tag, purification from ''E. coli'', in [[pGP172]]), available in [[Stülke]] lab
** pGP93 (N-terminal Strep-tag, purification from ''B. subtilis'', for [[SPINE]], in [[pGP380]]), available in [[Stülke]] lab
** GP1215 (''eno''-''Strep'' ''(spc)''), purification from ''B. subtilis'', for [[SPINE]], available in [[Stülke]] lab

* '''lacZ fusion:'''
** see ''[[pgk]]''

* '''GFP fusion:''' pHT315-yfp-eno, available in [[Mijakovic]] lab

* '''two-hybrid system:''' ''B. pertussis'' adenylate cyclase-based bacterial two hybrid system ([[BACTH]]), available in [[Stülke]] lab

* '''FLAG-tag construct:''' GP1214 (spc, based on [[pGP1331]]), available in the [[Stülke]] lab

* '''Antibody:''' available in [[Stülke]] lab

=Labs working on this gene/protein=

[[Stülke|Jörg Stülke]], University of Göttingen, Germany
[http://wwwuser.gwdg.de/~genmibio/stuelke.html Homepage]

=Your additional remarks=

=References=
==Reviews==
<pubmed> 8994873 </pubmed>
==Subcellular localization of enolase==
'''Additional publications:''' {{PubMed|21856851}}
<pubmed> 16479537 18763711 15003462 20497499 </pubmed>

==Other original publications==
<pubmed> 17726680, 17218307, 12850135, 19193632, 11489127, 8021172, 17505547, 25885, 20572937 15476816 9988532 ,21803996</pubmed>

[[Category:Protein-coding genes]]

Eno

2011-09-10T20:38:24Z

Lflorez: Replaced content with "Versuch"

Versuch

Eno

2011-09-10T20:37:09Z

Lflorez: Undo revision 145902 by Lflorez (talk)

Eno

2011-09-10T20:36:23Z

Lflorez: Replaced content with "Versuch"

Versuch

Eno

2011-09-10T20:35:28Z

Lflorez: Undo revision 145900 by Lflorez (talk)

Eno

2011-09-10T20:34:27Z

Lflorez: Replaced content with "Versuch"

Versuch

Sandbox

2011-09-10T20:31:25Z

Lflorez: Undo revision 145898 by Lflorez (talk)

'''All genes are grouped in one or more categories. These categories help to identify genes/proteins with common function, regulation or properties.

To see additional subcategories, please go to the pages for the six top-level categories.

'''
==1. [[Cellular processes]]==
* 1.1. Cell envelope and cell division
** 1.1.1. [[Cell wall synthesis]]
** 1.1.2. [[Cell shape]]
** 1.1.3. [[Cell wall degradation/ turnover]]
** 1.1.4. [[Capsule biosynthesis and degradation]]
** 1.1.5. [[Cell wall/ other]]
** 1.1.6. [[Membrane dynamics]]
** 1.1.7. [[Cell division]]
* 1.2. Transporters
** 1.2.1. [[ABC transporters]]
** 1.2.2. [[Phosphotransferase systems]]
** 1.2.3. [[Transporters/ other]]
* 1.3. Homeostasis
** 1.3.1. [[Metal ion homeostasis (K, Na, Ca, Mg)]]
** 1.3.2. [[Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo)]]
** 1.3.3. [[Acquisition of iron]]
** 1.3.4. [[pH homeostasis]]

==2. [[Metabolism]]==
* 2.1. Electron transport and ATP synthesis
** 2.1.1. [[Regulators of electron transport]]
** 2.1.2. [[Respiration]]
** 2.1.3. [[Electron transport/ other]]
** 2.1.4. [[ATP synthesis]]
* 2.2. Carbon metabolism
** 2.2.1. [[Carbon core metabolism]]
** 2.2.2. [[Utilization of specific carbon sources]]
* 2.3. Amino acid/ nitrogen metabolism
** 2.3.1. [[Biosynthesis/ acquisition of amino acids]]
** 2.3.2. [[Utilization of amino acids]]
** 2.3.3. [[Utilization of nitrogen sources other than amino acids]]
** 2.3.4. [[Putative amino acid transporter]]
* 2.4. Lipid metabolism
** 2.4.1. [[Utilization of lipids]]
** 2.4.2. [[Biosynthesis of lipids]]
** 2.4.3. [[Lipid metabolism/ other]]
* 2.5. Nucleotide metabolism
** 2.5.1. [[Utilization of nucleotides]]
** 2.5.2. [[Biosynthesis/ acquisition of nucleotides]]
** 2.5.3. [[Metabolism of signalling nucleotides]]
** 2.5.4. [[Nucleotide metabolism/ other]]
* 2.6. Additional metabolic pathways
** 2.6.1. [[Biosynthesis of cell wall components]]
** 2.6.2. [[Biosynthesis of cofactors]]
** 2.6.3. [[Phosphate metabolism]]
** 2.6.4. [[Sulfur metabolism]]
** 2.6.5. [[Iron metabolism]]
** 2.6.6. [[Miscellaneous metabolic pathways]]

==3. [[Information processing]]==
* 3.1. Genetics
** 3.1.1. [[DNA replication]]
** 3.1.2. [[DNA condensation/ segregation]]
** 3.1.3. [[DNA restriction/ modification]]
** 3.1.4. [[DNA repair/ recombination]]
** 3.1.5. [[Genetic competence]]
** 3.1.6. [[Genetics/ other]]
* 3.2. RNA synthesis and degradation
** 3.2.1. [[Transcription]]
** 3.2.2. [[RNA chaperones]]
** 3.2.3. [[DEAD-box RNA helicases]]
** 3.2.4. [[RNases]]
* 3.3. Protein synthesis, modification and degradation
** 3.3.1. [[Translation]]
** 3.3.2. [[Chaperones/ protein folding]]
** 3.3.3. [[Protein modification]]
** 3.3.4. [[Protein secretion]]
** 3.3.5. [[Proteolysis]]
* 3.4. Regulation of gene expression
** 3.4.1. [[Sigma factors and their control]]
**''' 3.4.2. [[Two-component regulatory systems and their control]]'''
**''' 3.4.3. [[DNA binding transcription factors and their control]]'''
** 3.4.4. [[Trigger enzymes]]
**''' 3.4.5. [[PRD-type regulators]]'''
** 3.4.6. [[RNA binding regulators]]

==4. [[Lifestyles]]==
* 4.1. Exponential and early post-exponential lifestyles
** 4.1.1. [[Motility and chemotaxis]]
** 4.1.2. [[Biofilm formation]]
** 4.1.3. [[Genetic competence]]
**''' 4.1.4. [[Transition state regulators]]'''
**''' 4.1.5. [[Quorum sensing]]'''
* 4.2. Sporulation and Germination
** 4.2.1. [[Sporulation proteins]]
** 4.2.2. [[Phosphorelay]]
** 4.2.3. [[Sporulation/ other]]
** 4.2.4. [[Germination]]
* 4.3. Coping with stress
** 4.3.1. [[General stress proteins (controlled by SigB)]]
** 4.3.2. [[Cell envelope stress proteins (controlled by SigM, W, X, Y)]]
** 4.3.3. [[Acid stress proteins (controlled by YvrI-YvrHa)]]
** 4.3.4. [[Heat shock proteins]]
** 4.3.5. [[Cold stress proteins]]
** 4.3.6. [[Coping with hyper-osmotic stress]]
** 4.3.7. [[Coping with hypo-osmotic stress]]
** 4.3.8. [[Resistance against oxidative and electrophile stress]]
** 4.3.9. [[Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)]]
** 4.3.10.[[ Resistance against toxic metals]]
** 4.3.11.[[ Resistance against toxins/ antibiotics]]
** 4.3.12.[[ Biosynthesis of antibacterial compounds]]
** 4.3.13.[[ Toxins, antitoxins and immunity against toxins]]
* 4.4. [[Lifestyles/ miscellaneous]]

==5. [[Prophages and mobile genetic elements]]==
* 5.1. Prophages
** 5.1.1. [[PBSX prophage]]
** 5.1.2. [[SPß prophage]]
** 5.1.3. [[Skin element]]
** 5.1.4. [[Phage-related functions]]
* 5.2. [[Mobile genetic elements]]

==6. [[Groups of genes]]==
* 6.1. [[Essential genes]]
* 6.2. [[Membrane proteins]]
* 6.3. [[GTP-binding proteins]]
* 6.4. [[Phosphoproteins]]
* 6.5. [[Universally conserved proteins]]
* 6.6. [[Poorly characterized/ putative enzymes]]
* 6.7. [[Proteins of unknown function]]
* 6.8. [[Short peptides]]
* 6.9. [[ncRNA]]
* 6.10. [[Pseudogenes]]
*''' 6.11. [[Regulators of core metabolism]]'''

Sandbox

2011-09-10T20:30:35Z

Lflorez: Replaced content with "Versuch"

Versuch

Talk:YcnJ

2010-12-10T09:02:37Z

Lflorez: Created page with "Does it belong instead to the CsoR regulon?"

Does it belong instead to the CsoR regulon?

Regulons

2010-12-10T08:06:11Z

Lflorez: /* DNA-binding regulators */

Overview on the regulons in ''B. subtilis''

= [[Sigma factors]] =

* [[SigB regulon]], see also [[SigB]]
* [[SigD regulon]], see also [[SigD]]
* [[SigE regulon]], see also [[SigE]]
* [[SigF regulon]], see also [[SigF]]
* [[SigG regulon]], see also [[SigG]]
* [[SigH regulon]], see also [[SigH]]
* [[SigI regulon]], see also [[SigI]]
* [[SigK regulon]], see also [[SigK]]
* [[SigL regulon]], see also [[SigL]]
* [[SigM regulon]], see also [[SigM]]
* [[SigW regulon]], see also [[SigW]]
* [[SigX regulon]], see also [[SigX]]
* [[SigY regulon]], see also [[SigY]]
* [[Xpf regulon]], see also [[Xpf]]
* [[YlaC regulon]], see also [[YlaC]]
* [[YvrI-YvrHa regulon]], see also [[YvrI]] and [[YvrHa]]

= DNA-binding regulators =

* [[Abh regulon]], see also [[Abh]]
* [[AbrB regulon]], see also [[AbrB]]
* [[AcoR regulon]], see also [[AcoR]]
* [[AdaA regulon]], see also [[AdaA]]
* [[AdhR regulon]], see also [[AdhR]]
* [[AhrC regulon]], see also [[AhrC]]
* [[AlsR regulon]], see also [[AlsR]]
* [[AnsR regulon]], see also [[AnsR]]
* [[AraR regulon]], see also [[AraR]]
* [[ArsR regulon]], see also [[ArsR]]
* [[AseR regulon]], see also [[AseR]]
* [[AzlB regulon]], see also [[AzlB]]
* [[BceR regulon]], see also [[BceR]]
* [[BirA regulon]], see also [[BirA]]
* [[BkdR regulon]], see also [[BkdR]]
* [[BltR regulon]], see also [[BltR]]
* [[BmrR regulon]], see also [[BmrR]]
* [[BsdA regulon]], see also [[BsdA]]
* [[Btr regulon]], see also [[Btr]]
* [[CatR regulon]], see also [[CatR]]
* [[CcpA regulon]], see also [[CcpA]]
* [[CcpC regulon]], see also [[CcpC]]
* [[CcpN regulon]], see also [[CcpN]]
* [[CggR regulon]], see also [[CggR]]
* [[CitR regulon]], see also [[CitR]]
* [[CitT regulon]], see also [[CitT]]
* [[CodY regulon]], see also [[CodY]]
* [[ComA regulon]], see also [[ComA]]
* [[ComK regulon]], see also [[ComK]]
* [[Cso regulon]], see also [[CsoR]]
* [[CsoR regulon]], see also [[CsoR]]
* [[CssR regulon]], see also [[CssR]]
* [[CtsR regulon]], see also [[CtsR]]
* [[CymR regulon]], see also [[CymR]]
* [[CysL regulon]], see also [[CysL]]
* [[CzrA regulon]], see also [[CzrA]]
* [[DegU regulon]], see also [[DegU]]
* [[DeoR regulon]], see also [[DeoR]]
* [[DesR regulon]], see also [[DesR]]
* [[DnaA regulon]], see also [[DnaA]]
* [[ExuR regulon]], see also [[ExuR]]
* [[FadR regulon]], see also [[FadR]]
* [[FapR regulon]], see also [[FapR]]
* [[FatR regulon]], see also [[FatR]]
* [[Fnr regulon]], see also [[Fnr]]
* [[FruR regulon]], see also [[FruR]]
* [[Fur regulon]], see also [[Fur]]
* [[GabR regulon]], see also [[GabR]]
* [[GerE regulon]], see also [[GerE]]
* [[GerR regulon]], see also [[GerR]]
* [[GlnL regulon]], see also [[GlnL]]
* [[GlnR regulon]], see also [[GlnR]]
* [[GltC regulon]], see also [[GltC]]
* [[GltR regulon]], see also [[GltR]]
* [[GlvR regulon]], see also [[GlvR]]
* [[GmuR regulon]], see also [[GmuR]]
* [[GntR regulon]], see also [[GntR]]
* [[GutR regulon]], see also [[GutR]]
* [[HrcA regulon]], see also [[HrcA]]
* [[HxlR regulon]], see also [[HxlR]]
* [[ImmR regulon]], see also [[ImmR]]
* [[IolR regulon]], see also [[IolR]]
* [[KdgR regulon]], see also [[KdgR]]
* [[KipR regulon]], see also [[KipR]]
* [[LacR regulon]], see also [[LacR]]
* [[LevR regulon]], see also [[LevR]]
* [[LexA regulon]], see also [[LexA]]
* [[LiaR regulon]], see also [[LiaR]]
* [[LicR regulon]], see also [[LicR]]
* [[LmrA regulon]], see also [[LmrA]]
* [[LutR regulon]], see also [[LutR]]
* [[LytR regulon]], see also [[LytR]]
* [[MalR regulon]], see also [[MalR]]
* [[ManR regulon]], see also [[ManR]]
* [[MdtR regulon]], see also [[MdtR]]
* [[MhqR regulon]], see also [[MhqR]]
* [[MntR regulon]], see also [[MntR]]
* [[Mta regulon]], see also [[Mta]]
* [[MtlR regulon]], see also [[MtlR]]
* [[NadR regulon]], see also [[NadR]]
* [[NatR regulon]], see also [[NatR]]
* [[NsrR regulon]], see also [[NsrR]]
* [[NtdR regulon]], see also [[NtdR]]
* [[OhrR regulon]], see also [[OhrR]]
* [[PadR regulon]], see also [[PadR]]
* [[PerR regulon]], see also [[PerR]]
* [[PhoP regulon]], see also [[PhoP]]
* [[PucR regulon]], see also [[PucR]]
* [[PurR regulon]], see also [[PurR]]
* [[ResD regulon]], see also [[ResD]]
* [[Rex regulon]], see also [[Rex]]
* [[RghR regulon]], see also [[RghR]]
* [[RocR regulon]], see also [[RocR]]
* [[Rok regulon]], see also [[Rok]]
* [[RsfA regulon]], see also [[RsfA]]
* [[SalA regulon]], see also [[SalA]]
* [[ScoC regulon]], see also [[ScoC]]
* [[SdpR regulon]], see also [[SdpR]]
* [[SenS regulon]], see also [[SenS]]
* [[SinR regulon]], see also [[SinR]]
* [[SlrR regulon]], see also [[SlrR]]
* [[Spo0A regulon]], see also [[Spo0A]]
* [[SpoIIID regulon]], see also [[SpoIIID]]
* [[Spx regulon]], see also [[Spx]]
* [[TnrA regulon]], see also [[TnrA]]
* [[TreR regulon]], see also [[TreR]]
* [[WalR regulon]], see also [[WalR]]
* [[Xre regulon]], see also [[Xre]]
* [[XylR regulon]], see also [[XylR]]
* [[YcbG regulon]], see also [[YcbG]]
* [[YclJ regulon]], see also [[YclJ]]
* [[YcnK regulon]], see also [[YcnK]]
* [[YdfI regulon]], see also [[YdfI]]
* [[YesS regulon]], see also [[YesS]]
* [[YetL regulon]], see also [[YetL]]
* [[YfhP regulon]], see also [[YfhP]]
* [[YfmP regulon]], see also [[YfmP]]
* [[YkrP regulon]], see also [[YkrP]]
* [[YodB regulon]], see also [[YobB]]
* [[YofA regulon]], see also [[YofA]]
* [[YrkP regulon]], see also [[YrkP]]
* [[YtlI regulon]], see also [[YtlI]]
* [[YtrA regulon]], see also [[YtrA]]
* [[YvoA regulon]], see also [[YvoA]]
* [[YvrHb regulon]], see also [[YvrHb]]
* [[YwcC regulon]], see also [[YwcC]]
* [[YxaF regulon]], see also [[YxaF]]
* [[YxdJ regulon]], see also [[YxdJ]]
* [[Zur regulon]], see also [[Zur]]

= [[RNA switch|RNA switches]] =

* [[A-box]]
* [[EAR riboswitch]]
* [[FMN-box]]
* [[G-box]]
* [[GlcT regulon]], see also [[GlcT]]
* [[glmS ribozyme]]
* [[GlpP regulon]], see also [[GlpP]]
* [[HutP regulon]], see also [[HutP]]
* [[L-box]]
* [[LicT regulon]], see also [[LicT]]
* [[M-box]]
* [[preQ1 riboswitch]]
* [[PyrR regulon]], see also [[PyrR]]
* [[RplT regulon]], see also [[RplT]]
* [[SacT regulon]], see also [[SacT]]
* [[SacY regulon]], see also [[SacY]]
* [[S-box]]
* [[T-box]]
* [[Thi-box]]
* [[TRAP regulon]], see also [[MtrB]]
* [[YdaO riboswitch]]
* [[RNA switch/ other]]

= Additional regulatory mechanisms =

* [[CitB regulon]], see also [[CitB]]
* [[ComN regulon]], see also [[ComN]]
* [[CsrA regulon]], see also [[CsrA]]
* [[fsrA regulon]], see also ''[[fsrA]]''
* [[MifM regulon]], see also [[MifM]]
* [[ratA regulon]], see also ''[[ratA]]''
* [[SR1 regulon]], see also [[sr1]]
* [[Stringent response]]

File:All genes and their categories.xls

2010-12-09T21:25:56Z

Lflorez: An Excel table with a list of all categories and sub-categories with all the genes in them.

An Excel table with a list of all categories and sub-categories with all the genes in them.

File:Regulons.xls

2010-12-09T21:04:31Z

Lflorez: An Excel table with all the regulons and their genes as of the 9th of December 2010.

An Excel table with all the regulons and their genes as of the 9th of December 2010.

Template:RegulonTable

2010-12-09T20:58:54Z

Lflorez:

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Regulator'''
|
{{{Regulator}}}
|-
|colspan="2" style="background:#FAF8CC;" align="center"|
* '''[[regulons|Overview on the regulons (wiki page)]]'''
* '''[[Media:regulons.xls|Overview on the regulons (Excel file)]]'''
|}

FsrA regulon

2010-12-09T19:24:14Z

Lflorez: Created page with " {{RegulonTable| Regulator=FsrA }} = Genes in this regulon = === Translation inhibition === * ''citB'' * ''leuC'' * ''lutB'' * ''sdhC''"

{{RegulonTable|
Regulator=[[FsrA]]
}}

= Genes in this regulon =

=== Translation inhibition ===
* ''[[citB]]''
* ''[[leuC]]''
* ''[[lutB]]''
* ''[[sdhC]]''

Stringent response

2010-12-09T19:23:54Z

Lflorez: Created page with " {{RegulonTable| Regulator=stringent response }} = Genes in this regulon = === Negative regulation === * ''adk'' * ''atpA'' * ''atpB'' * ''atpC'' * ''[[atpD..."

{{RegulonTable|
Regulator=[[stringent response]]
}}

= Genes in this regulon =

=== Negative regulation ===
* ''[[adk]]''
* ''[[atpA]]''
* ''[[atpB]]''
* ''[[atpC]]''
* ''[[atpD]]''
* ''[[atpE]]''
* ''[[atpF]]''
* ''[[atpG]]''
* ''[[atpH]]''
* ''[[atpI]]''
* ''[[cymR]]''
* ''[[dltA]]''
* ''[[dltB]]''
* ''[[dltC]]''
* ''[[dltD]]''
* ''[[dltE]]''
* ''[[dxs]]''
* ''[[frr]]''
* ''[[fusA]]''
* ''[[gcaD]]''
* ''[[infA]]''
* ''[[infB]]''
* ''[[infC]]''
* ''[[map]]''
* ''[[mbl]]''
* ''[[murE]]''
* ''[[ndh]]''
* ''[[nusA]]''
* ''[[nusB]]''
* ''[[pdhA]]''
* ''[[pdhB]]''
* ''[[pdhC]]''
* ''[[pdhD]]''
* ''[[pnpA]]''
* ''[[prs]]''
* ''[[ptsG]]''
* ''[[ptsH]]''
* ''[[ptsI]]''
* ''[[pyrH]]''
* ''[[qoxA]]''
* ''[[qoxB]]''
* ''[[qoxC]]''
* ''[[qoxD]]''
* ''[[rbfA]]''
* ''[[rnc]]''
* ''[[rplA]]''
* ''[[rplB]]''
* ''[[rplC]]''
* ''[[rplD]]''
* ''[[rplE]]''
* ''[[rplF]]''
* ''[[rplJ]]''
* ''[[rplK]]''
* ''[[rplL]]''
* ''[[rplM]]''
* ''[[rplN]]''
* ''[[rplO]]''
* ''[[rplP]]''
* ''[[rplQ]]''
* ''[[rplR]]''
* ''[[rplS]]''
* ''[[rplT]]''
* ''[[rplU]]''
* ''[[rplV]]''
* ''[[rplW]]''
* ''[[rplX]]''
* ''[[rpmB]]''
* ''[[rpmC]]''
* ''[[rpmD]]''
* ''[[rpmE]]''
* ''[[rpmF]]''
* ''[[rpmI]]''
* ''[[rpmJ]]''
* ''[[rpoA]]''
* ''[[rpoB]]''
* ''[[rpoC]]''
* ''[[rpsB]]''
* ''[[rpsC]]''
* ''[[rpsD]]''
* ''[[rpsE]]''
* ''[[rpsF]]''
* ''[[rpsG]]''
* ''[[rpsH]]''
* ''[[rpsI]]''
* ''[[rpsJ]]''
* ''[[rpsK]]''
* ''[[rpsL]]''
* ''[[rpsM]]''
* ''[[rpsN]]''
* ''[[rpsO]]''
* ''[[rpsP]]''
* ''[[rpsQ]]''
* ''[[rpsR]]''
* ''[[rpsS]]''
* ''[[scpA]]''
* ''[[scpB]]''
* ''[[secY]]''
* ''[[ssbA]]''
* ''[[tig]]''
* ''[[trmU]]''
* ''[[truA]]''
* ''[[tsf]]''
* ''[[tufA]]''
* ''[[ybxB]]''
* ''[[ybxF]]''
* ''[[yjlC]]''
* ''[[ylaG]]''
* ''[[ylbN]]''
* ''[[ylxP]]''
* ''[[ylxQ]]''
* ''[[ylxR]]''
* ''[[ylxS]]''
* ''[[yrvE]]''
* ''[[yrvO]]''
* ''[[ysxB]]''
* ''[[yugI]]''

=== Positive regulation ===
* ''[[alsD]]''
* ''[[alsS]]''
* ''[[pycA]]''

SR1 regulon

2010-12-09T19:23:24Z

Lflorez: Created page with " {{RegulonTable| Regulator=SR1 }} = Genes in this regulon = === Translation inhibition === * ''ahrC''"

{{RegulonTable|
Regulator=[[SR1]]
}}

= Genes in this regulon =

=== Translation inhibition ===
* ''[[ahrC]]''

RatA regulon

2010-12-09T19:23:22Z

Lflorez: Created page with " {{RegulonTable| Regulator=ratA }} = Genes in this regulon = === Antisense rna === * ''txpA''"

{{RegulonTable|
Regulator=[[ratA]]
}}

= Genes in this regulon =

=== Antisense rna ===
* ''[[txpA]]''

MifM regulon

2010-12-09T19:23:21Z

Lflorez: Created page with " {{RegulonTable| Regulator=MifM }} = Genes in this regulon = === Translation control === * ''yqjG''"

{{RegulonTable|
Regulator=[[MifM]]
}}

= Genes in this regulon =

=== Translation control ===
* ''[[yqjG]]''

CsrA regulon

2010-12-09T19:22:32Z

Lflorez: Created page with " {{RegulonTable| Regulator=CsrA }} = Genes in this regulon = === Translation inhibition === * ''hag''"

{{RegulonTable|
Regulator=[[CsrA]]
}}

= Genes in this regulon =

=== Translation inhibition ===
* ''[[hag]]''

ComN regulon

2010-12-09T19:22:31Z

Lflorez: Created page with " {{RegulonTable| Regulator=ComN }} = Genes in this regulon = === Post-translational control === * ''comEA'' * ''comEB'' * ''comEC''"

{{RegulonTable|
Regulator=[[ComN]]
}}

= Genes in this regulon =

=== Post-translational control ===
* ''[[comEA]]''
* ''[[comEB]]''
* ''[[comEC]]''

CitB regulon

2010-12-09T19:22:30Z

Lflorez: Created page with " {{RegulonTable| Regulator=CitB }} = Genes in this regulon = === Translation control === * ''feuA'' * ''feuB'' * ''feuC'' * ''ybbA''"

{{RegulonTable|
Regulator=[[CitB]]
}}

= Genes in this regulon =

=== Translation control ===
* ''[[feuA]]''
* ''[[feuB]]''
* ''[[feuC]]''
* ''[[ybbA]]''

RNA switch/ other

2010-12-09T19:20:20Z

Lflorez: Created page with " {{RegulonTable| Regulator=RNA switch }} = Genes in this regulon = === Unknown mechanism === * ''vmlR''"

{{RegulonTable|
Regulator=[[RNA switch]]
}}

= Genes in this regulon =

=== Unknown mechanism ===
* ''[[vmlR]]''

TRAP regulon

2010-12-09T19:20:16Z

Lflorez: Created page with " {{RegulonTable| Regulator=TRAP }} = Genes in this regulon = === Termination === * ''aroE'' * ''hisC'' * ''trpA'' * ''trpB'' * ''trpC'' * ''trpD'' *..."

{{RegulonTable|
Regulator=[[TRAP]]
}}

= Genes in this regulon =

=== Termination ===
* ''[[aroE]]''
* ''[[hisC]]''
* ''[[trpA]]''
* ''[[trpB]]''
* ''[[trpC]]''
* ''[[trpD]]''
* ''[[trpE]]''
* ''[[trpF]]''
* ''[[tyrA]]''

=== Translation inhibition ===
* ''[[pabA]]''
* ''[[trpP]]''
* ''[[ycbK]]''

SacY regulon

2010-12-09T19:20:15Z

Lflorez: Created page with " {{RegulonTable| Regulator=SacY }} = Genes in this regulon = === Antitermination === * ''levB'' * ''sacB'' * ''sacX'' * ''sacY'' * ''yveA''"

{{RegulonTable|
Regulator=[[SacY]]
}}

= Genes in this regulon =

=== Antitermination ===
* ''[[levB]]''
* ''[[sacB]]''
* ''[[sacX]]''
* ''[[sacY]]''
* ''[[yveA]]''

RplT regulon

2010-12-09T19:20:14Z

Lflorez: Created page with " {{RegulonTable| Regulator=RplT }} = Genes in this regulon = === Termination === * ''infC'' * ''rplT'' * ''rpmI'' * ''ysdA''"

{{RegulonTable|
Regulator=[[RplT]]
}}

= Genes in this regulon =

=== Termination ===
* ''[[infC]]''
* ''[[rplT]]''
* ''[[rpmI]]''
* ''[[ysdA]]''

SacT regulon

2010-12-09T19:20:14Z

Lflorez: Created page with " {{RegulonTable| Regulator=SacT }} = Genes in this regulon = === Antitermination === * ''sacA'' * ''sacP'' * ''ywdA''"

{{RegulonTable|
Regulator=[[SacT]]
}}

= Genes in this regulon =

=== Antitermination ===
* ''[[sacA]]''
* ''[[sacP]]''
* ''[[ywdA]]''

PyrR regulon

2010-12-09T19:20:12Z

Lflorez: Created page with " {{RegulonTable| Regulator=PyrR }} = Genes in this regulon = === Antitermination === * ''pyrAA'' * ''pyrAB'' * ''pyrB'' * ''pyrC'' * ''pyrD'' * ''[[pyrE..."

{{RegulonTable|
Regulator=[[PyrR]]
}}

= Genes in this regulon =

=== Antitermination ===
* ''[[pyrAA]]''
* ''[[pyrAB]]''
* ''[[pyrB]]''
* ''[[pyrC]]''
* ''[[pyrD]]''
* ''[[pyrE]]''
* ''[[pyrF]]''
* ''[[pyrK]]''
* ''[[pyrP]]''
* ''[[pyrR]]''

LicT regulon

2010-12-09T19:20:11Z

Lflorez: Created page with " {{RegulonTable| Regulator=LicT }} = Genes in this regulon = === Antitermination === * ''bglH'' * ''bglP'' * ''bglS'' * ''yxiE''"

{{RegulonTable|
Regulator=[[LicT]]
}}

= Genes in this regulon =

=== Antitermination ===
* ''[[bglH]]''
* ''[[bglP]]''
* ''[[bglS]]''
* ''[[yxiE]]''

HutP regulon

2010-12-09T19:20:10Z

Lflorez: Created page with " {{RegulonTable| Regulator=HutP }} = Genes in this regulon = === Antitermination === * ''hutG'' * ''hutH'' * ''hutI'' * ''hutM'' * ''hutU''"

{{RegulonTable|
Regulator=[[HutP]]
}}

= Genes in this regulon =

=== Antitermination ===
* ''[[hutG]]''
* ''[[hutH]]''
* ''[[hutI]]''
* ''[[hutM]]''
* ''[[hutU]]''

GlpP regulon

2010-12-09T19:20:09Z

Lflorez: Created page with " {{RegulonTable| Regulator=GlpP }} = Genes in this regulon = === Antitermination === * ''glpD'' * ''glpF'' * ''glpK'' * ''glpQ'' * ''glpT''"

{{RegulonTable|
Regulator=[[GlpP]]
}}

= Genes in this regulon =

=== Antitermination ===
* ''[[glpD]]''
* ''[[glpF]]''
* ''[[glpK]]''
* ''[[glpQ]]''
* ''[[glpT]]''

GlmS ribozyme

2010-12-09T19:20:06Z

Lflorez: Created page with " {{RegulonTable| Regulator=glmS ribozyme }} = Genes in this regulon = === Rna cleavage === * ''glmS''"

{{RegulonTable|
Regulator=[[glmS ribozyme]]
}}

= Genes in this regulon =

=== Rna cleavage ===
* ''[[glmS]]''

GlcT regulon

2010-12-09T19:20:04Z

Lflorez: Created page with " {{RegulonTable| Regulator=GlcT }} = Genes in this regulon = === Antitermination === * ''ptsG'' * ''ptsH'' * ''ptsI''"

{{RegulonTable|
Regulator=[[GlcT]]
}}

= Genes in this regulon =

=== Antitermination ===
* ''[[ptsG]]''
* ''[[ptsH]]''
* ''[[ptsI]]''

EAR riboswitch

2010-12-09T19:20:03Z

Lflorez: Created page with " {{RegulonTable| Regulator=EAR }} = Genes in this regulon = === Processive antitermination === * ''epsC'' * ''epsD'' * ''epsE'' * ''epsF'' * ''epsG'' * ..."

{{RegulonTable|
Regulator=[[EAR]]
}}

= Genes in this regulon =

=== Processive antitermination ===
* ''[[epsC]]''
* ''[[epsD]]''
* ''[[epsE]]''
* ''[[epsF]]''
* ''[[epsG]]''
* ''[[epsH]]''
* ''[[epsI]]''
* ''[[epsJ]]''
* ''[[epsK]]''
* ''[[epsL]]''
* ''[[epsM]]''
* ''[[epsN]]''
* ''[[epsO]]''

Zur regulon

2010-12-09T19:18:11Z

Lflorez: Created page with " {{RegulonTable| Regulator=Zur }} = Genes in this regulon = === Repression === * ''folE2'' * ''ycdH'' * ''ycdI'' * ''yceA'' * ''yciB'' * ''yciC'' * ..."

{{RegulonTable|
Regulator=[[Zur]]
}}

= Genes in this regulon =

=== Repression ===
* ''[[folE2]]''
* ''[[ycdH]]''
* ''[[ycdI]]''
* ''[[yceA]]''
* ''[[yciB]]''
* ''[[yciC]]''
* ''[[yhzA]]''
* ''[[ytiA]]''

YxdJ regulon

2010-12-09T19:18:10Z

Lflorez: Created page with " {{RegulonTable| Regulator=YxdJ }} = Genes in this regulon = === Activation === * ''yxdL'' * ''yxdM'' * ''yxeA''"

{{RegulonTable|
Regulator=[[YxdJ]]
}}

= Genes in this regulon =

=== Activation ===
* ''[[yxdL]]''
* ''[[yxdM]]''
* ''[[yxeA]]''

QdoR regulon

2010-12-09T19:18:09Z

Lflorez: Created page with " {{RegulonTable| Regulator=YxaF }} = Genes in this regulon = === Repression === * ''qdoI'' * ''yxaF'' * ''yxaH''"

{{RegulonTable|
Regulator=[[YxaF]]
}}

= Genes in this regulon =

=== Repression ===
* ''[[qdoI]]''
* ''[[yxaF]]''
* ''[[yxaH]]''

YwcC regulon

2010-12-09T19:18:07Z

Lflorez: Created page with " {{RegulonTable| Regulator=YwcC }} = Genes in this regulon = === Repression === * ''slrA''"

{{RegulonTable|
Regulator=[[YwcC]]
}}

= Genes in this regulon =

=== Repression ===
* ''[[slrA]]''

YvrHb regulon

2010-12-09T19:18:06Z

Lflorez: Created page with " {{RegulonTable| Regulator=YvrHb }} = Genes in this regulon = === Activation === * ''bdbA'' * ''bdbB'' * ''dltA'' * ''dltB'' * ''dltC'' * ''dltD'' *..."

{{RegulonTable|
Regulator=[[YvrHb]]
}}

= Genes in this regulon =

=== Activation ===
* ''[[bdbA]]''
* ''[[bdbB]]''
* ''[[dltA]]''
* ''[[dltB]]''
* ''[[dltC]]''
* ''[[dltD]]''
* ''[[dltE]]''
* ''[[rsiX]]''
* ''[[sigX]]''
* ''[[sunA]]''
* ''[[sunT]]''
* ''[[wapA]]''
* ''[[wprA]]''
* ''[[yolJ]]''
* ''[[yvrHa]]''
* ''[[yvrI]]''
* ''[[yxxG]]''

=== Repression ===
* ''[[lytA]]''
* ''[[lytB]]''
* ''[[lytC]]''

NagR regulon

2010-12-09T19:18:05Z

Lflorez: Created page with " {{RegulonTable| Regulator=YvoA }} = Genes in this regulon = === Repression === * ''nagA'' * ''nagB'' * ''nagP'' * ''yvoA''"

{{RegulonTable|
Regulator=[[YvoA]]
}}

= Genes in this regulon =

=== Repression ===
* ''[[nagA]]''
* ''[[nagB]]''
* ''[[nagP]]''
* ''[[yvoA]]''

YtrA regulon

2010-12-09T19:18:04Z

Lflorez: Created page with " {{RegulonTable| Regulator=YtrA }} = Genes in this regulon = === Repression === * ''ytrA'' * ''ytrB'' * ''ytrC'' * ''ytrD'' * ''ytrE'' * ''ytrF''"

{{RegulonTable|
Regulator=[[YtrA]]
}}

= Genes in this regulon =

=== Repression ===
* ''[[ytrA]]''
* ''[[ytrB]]''
* ''[[ytrC]]''
* ''[[ytrD]]''
* ''[[ytrE]]''
* ''[[ytrF]]''

AscR regulon

2010-12-09T19:18:02Z

Lflorez: Created page with " {{RegulonTable| Regulator=YtlI }} = Genes in this regulon = === Activation === * ''ribR'' * ''tcyJ'' * ''tcyK'' * ''tcyL'' * ''tcyM'' * ''tcyN'' * ..."

{{RegulonTable|
Regulator=[[YtlI]]
}}

= Genes in this regulon =

=== Activation ===
* ''[[ribR]]''
* ''[[tcyJ]]''
* ''[[tcyK]]''
* ''[[tcyL]]''
* ''[[tcyM]]''
* ''[[tcyN]]''
* ''[[ytmI]]''
* ''[[ytmO]]''
* ''[[ytnI]]''
* ''[[ytnJ]]''
* ''[[ytnL]]''
* ''[[ytnM]]''

YrkP regulon

2010-12-09T19:18:01Z

Lflorez: Created page with " {{RegulonTable| Regulator=YrkP }} = Genes in this regulon = === Activation === * ''yrkN'' * ''yrkO'' * ''yrkP'' * ''yrkQ'' * ''yrkR''"

{{RegulonTable|
Regulator=[[YrkP]]
}}

= Genes in this regulon =

=== Activation ===
* ''[[yrkN]]''
* ''[[yrkO]]''
* ''[[yrkP]]''
* ''[[yrkQ]]''
* ''[[yrkR]]''

YofA regulon

2010-12-09T19:18:00Z

Lflorez: Created page with " {{RegulonTable| Regulator=YofA }} = Genes in this regulon = === Activation === * ''ftsW''"

{{RegulonTable|
Regulator=[[YofA]]
}}

= Genes in this regulon =

=== Activation ===
* ''[[ftsW]]''

YodB regulon

2010-12-09T19:17:59Z

Lflorez: Created page with " {{RegulonTable| Regulator=YodB }} = Genes in this regulon = === Repression === * ''catD'' * ''catE''"

{{RegulonTable|
Regulator=[[YodB]]
}}

= Genes in this regulon =

=== Repression ===
* ''[[catD]]''
* ''[[catE]]''

YfmP regulon

2010-12-09T19:17:56Z

Lflorez: Created page with " {{RegulonTable| Regulator=YfmP }} = Genes in this regulon = === Repression === * ''yfmO'' * ''yfmP''"

{{RegulonTable|
Regulator=[[YfmP]]
}}

= Genes in this regulon =

=== Repression ===
* ''[[yfmO]]''
* ''[[yfmP]]''

YfhP regulon

2010-12-09T19:17:55Z

Lflorez: Created page with " {{RegulonTable| Regulator=YfhP }} = Genes in this regulon = === Repression === * ''fabL'' * ''mutY'' * ''sspE''"

{{RegulonTable|
Regulator=[[YfhP]]
}}

= Genes in this regulon =

=== Repression ===
* ''[[fabL]]''
* ''[[mutY]]''
* ''[[sspE]]''

YetL regulon

2010-12-09T19:17:54Z

Lflorez: Created page with " {{RegulonTable| Regulator=YetL }} = Genes in this regulon = === Repression === * ''yetM''"

{{RegulonTable|
Regulator=[[YetL]]
}}

= Genes in this regulon =

=== Repression ===
* ''[[yetM]]''

RhgR regulon

2010-12-09T19:17:53Z

Lflorez: Created page with " {{RegulonTable| Regulator=YesS }} = Genes in this regulon = === Activation === * ''yesS'' * ''yesT'' * ''yesU'' * ''yesV'' * ''yesW'' * ''yesX'' * ..."

{{RegulonTable|
Regulator=[[YesS]]
}}

= Genes in this regulon =

=== Activation ===
* ''[[yesS]]''
* ''[[yesT]]''
* ''[[yesU]]''
* ''[[yesV]]''
* ''[[yesW]]''
* ''[[yesX]]''
* ''[[yesY]]''
* ''[[yesZ]]''