LOCUS       005_Delta5_auf_Barbe     3908915 bp    DNA     circular CON 12-JAN-2021
DEFINITION  Bacillus subtilis subsp. subtilis str. 168 complete genome.
ACCESSION   NC_000964
DBLINK      BioProject: PRJNA76
            BioSample: SAMEA3138188
KEYWORDS    RefSeq; complete genome.
SOURCE      Bacillus subtilis subsp. subtilis str. 168
  ORGANISM  Bacillus subtilis subsp. subtilis str. 168
            Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
REFERENCE   1
  AUTHORS   Borriss,R., Danchin,A., Harwood,C.R., Medigue,C., Rocha,E.P.C.,
            Sekowska,A. and Vallenet,D.
  TITLE     Bacillus subtilis, the model Gram-positive bacterium: 20 years of
            annotation refinement
  JOURNAL   Microb Biotechnol 11 (1), 3-17 (2018)
  PUBMED    29280348
REFERENCE   2  (bases 1 to 4215606)
  AUTHORS   Belda,E., Sekowska,A., Le, Fevre,F., Morgat,A., Mornico,D.,
            Ouzounis,C., Vallenet,D., Medigue,C. and Danchin,A.
  TITLE     An updated metabolic view of the Bacillus subtilis 168 genome
  JOURNAL   Microbiology (Reading, Engl.) 159 (Pt 4), 757-770 (2013)
  PUBMED    23429746
REFERENCE   3  (bases 1 to 4215606)
  AUTHORS   Barbe,V., Cruveiller,S., Kunst,F., Lenoble,P., Meurice,G.,
            Sekowska,A., Vallenet,D., Wang,T., Moszer,I., Medigue,C. and
            Danchin,A.
  TITLE     From a consortium sequence to a unified sequence: the Bacillus
            subtilis 168 reference genome a decade later
  JOURNAL   Microbiology (Reading, Engl.) 155 (Pt 6), 1758-1775 (2009)
  PUBMED    19383706
REFERENCE   4  (bases 1 to 4215606)
  AUTHORS   Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G.,
            Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S.,
            Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C.,
            Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V.,
            Carter,N.M., Choi,S.K., Cordani,J.J., Connerton,I.F.,
            Cummings,N.J., Daniel,R.A., Denziot,F., Devine,K.M., Dusterhoft,A.,
            Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C.,
            Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S.,
            Galizzi,A., Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A.,
            Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K.,
            Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S.,
            Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D.,
            Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y.,
            Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K.,
            Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M.,
            Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N.,
            Mellado,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D.,
            O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V.,
            Pohl,T.M., Portelle,D., Porwollik,S., Prescott,A.M., Presecan,E.,
            Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M.,
            Rivolta,C., Rocha,E., Roche,B., Rose,M., Sadaie,Y., Sato,T.,
            Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J.,
            Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B.,
            Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K.,
            Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Togoni,A.,
            Tosato,V., Uchiyama,S., Vandebol,M., Vannier,F., Vassarotti,A.,
            Viari,A., Wambutt,R., Wedler,H., Weitzenegger,T., Winters,P.,
            Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K.,
            Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A.
  TITLE     The complete genome sequence of the gram-positive bacterium
            Bacillus subtilis
  JOURNAL   Nature 390 (6657), 249-256 (1997)
  PUBMED    9384377
REFERENCE   5  (bases 1 to 4215606)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-SEP-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   6  (bases 1 to 4215606)
  AUTHORS   Genoscope and -,C.E.A.
  CONSRTM   AMAbiotics and Genoscope
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2013) A. Danchin, AMAbiotics, Bldg G1, 2, rue
            Gaston Cremieux, 91000 EVRY antoine.danchin@normalesup.org Bldg G1
            Genoscope / CEA (Commissariat a l'energie atomique et aux energies
            alternatives): BP 191 91006 EVRY cedex - FRANCE (E-mail:
            seqref@genoscope.cns.fr - Web: www.genoscope.cns.fr)
REFERENCE   7  (bases 1 to 4215606)
  AUTHORS   Genoscope and -,C.E.A.
  CONSRTM   Institut Pasteur and Genoscope
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2009) Genoscope - Centre National de Sequencage :
            BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
            - Web : www.genoscope.cns.fr)
REFERENCE   8  (bases 1 to 4215606)
  AUTHORS   Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-NOV-1997) I. Moszer, A. Danchin, Genetique des
            Genomes Bacteriens, Institut Pasteur, 28 rue du Docteur Roux, 75724
            Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr,
            antoine.danchin@normalesup.org Phone: +33 (0)1 45 68 84 41, Fax:
            +33 (0)1 45 68 89 48
COMMENT     ##gff-version-START##
            gff-version :: 3
            ##gff-version-END##
FEATURES             Location/Qualifiers
     S_feature       1..148
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1_148"
                     /HighExp="T0.30H, C30, T1.0H, T1.30H, T-0.40H, T0.0H,
                     T2.0H, S2, T-1.10H, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S1"
     S_feature       complement(24..297)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_24_297_c"
                     /HighExp="S8, C30, Etha, S3, S7, S4, Cold, BT, S5, LoTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.178448"
                     /TUshortSig="SigK, SigEF"
                     /TUshortPSig="0.621, 0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S2"
     promotor_-35    120..124
                     /Source="Nicolas_upshift_promotors"
                     /id="U1"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.843156843156843"
                     /psig=1
                     /xcortree=2521
                     /SigmaFactorBS="tgtccgctttgtggataagattgtgacaacCATTGcaagctc
                     tcgtttatTTTGGTATTATATTTGTGTTttaactcttgattactaatcctacctttcc
                     t"
                     /listShort="S3, dnaA, S5, dnaN, yaaA, recF"
                     /listLong="yaaB, gyrB, S6, gyrA"
                     /label="promotor_-35"
     promotor_-10    140..159
                     /Source="Nicolas_upshift_promotors"
                     /id="U1"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.843156843156843"
                     /psig=1
                     /xcortree=2521
                     /SigmaFactorBS="tgtccgctttgtggataagattgtgacaacCATTGcaagctc
                     tcgtttatTTTGGTATTATATTTGTGTTttaactcttgattactaatcctacctttcc
                     t"
                     /listShort="S3, dnaA, S5, dnaN, yaaA, recF"
                     /listLong="yaaB, gyrB, S6, gyrA"
                     /label="promotor_-10"
     S_feature       150..409
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_150_409"
                     /HighExp="Heat, G180, LPhT, G150, dia15, Oxctl, S1, G135,
                     LBGstat, HPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S3"
     upshifts        150
                     /Source="Nicolas_upshifts"
                     /id="U1"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.843156843156843"
                     /psig=1
                     /xcortree=2521
                     /SigmaFactorBS="tgtccgctttgtggataagattgtgacaacCATTGcaagctc
                     tcgtttatTTTGGTATTATATTTGTGTTttaactcttgattactaatcctacctttcc
                     t"
                     /listShort="S3, dnaA, S5, dnaN, yaaA, recF"
                     /listLong="yaaB, gyrB, S6, gyrA"
     promotor_-10    complement(285..304)
                     /Source="Nicolas_upshift_promotors"
                     /id="U2"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.621378621378621"
                     /psig="0.621378621378621"
                     /xcortree=272
                     /SigmaFactorBS="aacacaaaaaaagagcaaatggcgcttaccaTTCGTACACat
                     taaatgttgaaAACATATAATATAGTAGATAaatagcttttcgacaaatttcacaact
                     t"
                     /listShort="S2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(297)
                     /Source="Nicolas_upshifts"
                     /id="U2"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.621378621378621"
                     /psig="0.621378621378621"
                     /xcortree=272
                     /SigmaFactorBS="aacacaaaaaaagagcaaatggcgcttaccaTTCGTACACat
                     taaatgttgaaAACATATAATATAGTAGATAaatagcttttcgacaaatttcacaact
                     t"
                     /listShort="S2"
                     /GFF_Attribute="listLong"
     S_feature       complement(299..1067)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_299_1067_c"
                     /HighExp="S4, LoTm, S3, C30, S5, S7, S6, T5.0H, S8,
                     M9-stat"
                     /AntisenseName="dnaA"
                     /AntisenseCor="-0.57810076860528403"
                     /AntisenseRegPval="-24.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S4"
     promotor_-35    complement(318..326)
                     /Source="Nicolas_upshift_promotors"
                     /id="U2"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.621378621378621"
                     /psig="0.621378621378621"
                     /xcortree=272
                     /SigmaFactorBS="aacacaaaaaaagagcaaatggcgcttaccaTTCGTACACat
                     taaatgttgaaAACATATAATATAGTAGATAaatagcttttcgacaaatttcacaact
                     t"
                     /listShort="S2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             410..1750
                     /gene="dnaA"
                     /locus_tag="BSU_00010"
                     /old_locus_tag="BSU00010"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:2167836, 2846289, 12682299, 16120674, 1779750,
                     28166228"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2167836, 2846289,
                     12682299, 16120674, 1779750, 28166228; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator informational
                     ATPase"
                     /protein_id="NP_387882.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00010"
                     /db_xref="EnsemblGenomes-Tr:CAB11777"
                     /db_xref="GOA:P05648"
                     /db_xref="InterPro:IPR001957"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR010921"
                     /db_xref="InterPro:IPR013159"
                     /db_xref="InterPro:IPR013317"
                     /db_xref="InterPro:IPR018312"
                     /db_xref="InterPro:IPR020591"
                     /db_xref="InterPro:IPR024633"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="PDB:4TPS"
                     /db_xref="SubtiList:BG10065"
                     /db_xref="UniProtKB/Swiss-Prot:P05648"
                     /translation="MENILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTIT
                     APNEFARDWLESRYLHLIADTIYELTGEELSIKFVIPQNQDVEDFMPKPQVKKAVKED
                     TSDFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHL
                     MHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF
                     LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPP
                     DLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDIN
                     ADLAAEALKDIIPSSKPKVITIKEIQRVVGQQFNIKLEDFKAKKRTKSVAFPRQIAMY
                     LSREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLADDEQLQQHVKEIKEQLK*"
     gene            410..1750
                     /gene="dnaA"
                     /locus_tag="BSU_00010"
                     /old_locus_tag="BSU00010"
     promotor_-10    complement(1040..1058)
                     /Source="Nicolas_upshift_promotors"
                     /id="U3"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1004
                     /SigmaFactorBS="ttcttcgtgtaatgtgttaaatgtatggaaaaattcttcctg
                     ggtttGTTCTTtccccgctaaaaattGAATATCATCTATCAAAAGcacatcaacattt
                     c"
                     /listShort="S4, S2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1066)
                     /Source="Nicolas_upshifts"
                     /id="U3"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1004
                     /SigmaFactorBS="ttcttcgtgtaatgtgttaaatgtatggaaaaattcttcctg
                     ggtttGTTCTTtccccgctaaaaattGAATATCATCTATCAAAAGcacatcaacattt
                     c"
                     /listShort="S4, S2"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1074..1079)
                     /Source="Nicolas_upshift_promotors"
                     /id="U3"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1004
                     /SigmaFactorBS="ttcttcgtgtaatgtgttaaatgtatggaaaaattcttcctg
                     ggtttGTTCTTtccccgctaaaaattGAATATCATCTATCAAAAGcacatcaacattt
                     c"
                     /listShort="S4, S2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1751..1938
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1751_1938"
                     /HighExp="G150, Heat, G180, G135, Paraq, Oxctl, dia0,
                     LBGstat, S1, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S5"
     CDS             1939..3075
                     /gene="dnaN"
                     /locus_tag="BSU_00020"
                     /old_locus_tag="BSU00020"
                     /EC_number="2.7.7.7"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:2846289, 11395445, 12682299, 20453097, 23228104,
                     28878042"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2846289, 11395445,
                     12682299, 20453097, 23228104, 28878042; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III (beta subunit)"
                     /protein_id="NP_387883.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00020"
                     /db_xref="EnsemblGenomes-Tr:CAB11778"
                     /db_xref="GOA:P05649"
                     /db_xref="InterPro:IPR001001"
                     /db_xref="InterPro:IPR022634"
                     /db_xref="InterPro:IPR022635"
                     /db_xref="InterPro:IPR022637"
                     /db_xref="PDB:4TR6"
                     /db_xref="SubtiList:BG10066"
                     /db_xref="UniProtKB/Swiss-Prot:P05649"
                     /translation="MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSF
                     TGSDSDISIESFIPKEEGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATVEIEVQNQY
                     LTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRP
                     ILTGVNWKVEQSELLCTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDN
                     QELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAID
                     RASLLAREGRNNVVKLSAKPAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKY
                     MLDALKVLEGAEIRVSFTGAMRPFLIRTPNDETIVQLILPVRTY*"
     gene            1939..3075
                     /gene="dnaN"
                     /locus_tag="BSU_00020"
                     /old_locus_tag="BSU00020"
     downshifts      3059
                     /Source="Nicolas_upshifts"
                     /id="D1"
                     /incds=0
                     /nref=29
                     /ntot=161
                     /MaxReadThrough="5.22584"
                     /MaxDrop="4.17087"
                     /score="21.887269"
                     /energy="-14.2"
                     /TU="U1"
                     /idTUdmin="U1"
                     /TUdmin="-572"
                     /isTUend="FALSE"
     promotor_-35    3140..3144
                     /Source="Nicolas_upshift_promotors"
                     /id="U4"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig="0.999000999001"
                     /xcortree=2587
                     /SigmaFactorBS="ttctattcggtatctgctccgacaagttttcCCTTTccctaa
                     ttcgttttttTTTAGTACAATTAGATATTAgtgatatttgaaagaggtcgatataatg
                     g"
                     /listShort="yaaA, recF, yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    3161..3180
                     /Source="Nicolas_upshift_promotors"
                     /id="U4"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig="0.999000999001"
                     /xcortree=2587
                     /SigmaFactorBS="ttctattcggtatctgctccgacaagttttcCCTTTccctaa
                     ttcgttttttTTTAGTACAATTAGATATTAgtgatatttgaaagaggtcgatataatg
                     g"
                     /listShort="yaaA, recF, yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        3169
                     /Source="Nicolas_upshifts"
                     /id="U4"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig="0.999000999001"
                     /xcortree=2587
                     /SigmaFactorBS="ttctattcggtatctgctccgacaagttttcCCTTTccctaa
                     ttcgttttttTTTAGTACAATTAGATATTAgtgatatttgaaagaggtcgatataatg
                     g"
                     /listShort="yaaA, recF, yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
     CDS             3206..3421
                     /gene="rlbA"
                     /locus_tag="BSU_00030"
                     /old_locus_tag="BSU00030"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:24637032, 24939895"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 24637032, 24939895;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA binding protein involved in ribosome
                     maturation"
                     /protein_id="NP_387884.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00030"
                     /db_xref="EnsemblGenomes-Tr:CAB11779"
                     /db_xref="GOA:P05650"
                     /db_xref="InterPro:IPR002942"
                     /db_xref="InterPro:IPR014330"
                     /db_xref="InterPro:IPR036986"
                     /db_xref="SubtiList:BG10067"
                     /db_xref="UniProtKB/Swiss-Prot:P05650"
                     /translation="MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVLVNDE
                     PDNRRGRKLYVGDVVEIEGFGSFQVVN*"
     gene            3206..3421
                     /gene="rlbA"
                     /locus_tag="BSU_00030"
                     /old_locus_tag="BSU00030"
     CDS             3437..4549
                     /gene="recF"
                     /locus_tag="BSU_00040"
                     /old_locus_tag="BSU00040"
                     /function="16.6: Maintain"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15186413, 16061691, 16385024, 22342069"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15186413, 16061691,
                     16385024, 22342069; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RecA filament-DNA complex stabilisation, ssDNA
                     and dsDNA binding, ATP binding"
                     /protein_id="NP_387885.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00040"
                     /db_xref="EnsemblGenomes-Tr:CAB11780"
                     /db_xref="GOA:P05651"
                     /db_xref="InterPro:IPR001238"
                     /db_xref="InterPro:IPR003395"
                     /db_xref="InterPro:IPR018078"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10068"
                     /db_xref="UniProtKB/Swiss-Prot:P05651"
                     /translation="MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIY
                     VLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQ
                     KLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
                     NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGL
                     EELTLKYHTALDVSDPLDLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNG
                     RDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTI
                     QGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK*"
     gene            3437..4549
                     /gene="recF"
                     /locus_tag="BSU_00040"
                     /old_locus_tag="BSU00040"
     misc_feature    3635..3654
                     /Source="Nicolas_upshift_promotors"
                     /id="U5"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2750
                     /SigmaFactorBS="cggacatcaaatgacaaagaacttatacggtgggacaaagac
                     TATGCTAAAATAGAGGGAAGagtgatgaagcaaaacggggcgatcccgatgcagctcg
                     t"
                     /listShort="yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        3653
                     /Source="Nicolas_upshifts"
                     /id="U5"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2750
                     /SigmaFactorBS="cggacatcaaatgacaaagaacttatacggtgggacaaagac
                     TATGCTAAAATAGAGGGAAGagtgatgaagcaaaacggggcgatcccgatgcagctcg
                     t"
                     /listShort="yaaB, gyrB, S6, gyrA"
                     /GFF_Attribute="listLong"
     CDS             4567..4812
                     /gene="remB"
                     /locus_tag="BSU_00050"
                     /old_locus_tag="BSU00050"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:19363116"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19363116; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of extracellular matrix formation"
                     /protein_id="NP_387886.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00050"
                     /db_xref="EnsemblGenomes-Tr:CAB11781"
                     /db_xref="InterPro:IPR007169"
                     /db_xref="SubtiList:BG10069"
                     /db_xref="UniProtKB/Swiss-Prot:P37525"
                     /translation="MYIHLGDDFVVSTRDIVGIFDFKANMSPIVEEFLKKQKHKVVPS
                     VNGTPKSIVVTVQNIYYSPLSSSTLKKRAQFMFEIDS*"
     gene            4567..4812
                     /gene="remB"
                     /locus_tag="BSU_00050"
                     /old_locus_tag="BSU00050"
     CDS             4867..6783
                     /gene="gyrB"
                     /locus_tag="BSU_00060"
                     /old_locus_tag="BSU00060"
                     /EC_number="5.99.1.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.9: Replicate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 12767818, 17320901"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 12767818,
                     17320901; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase (subunit B)"
                     /protein_id="NP_387887.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00060"
                     /db_xref="EnsemblGenomes-Tr:CAB11782"
                     /db_xref="GOA:P05652"
                     /db_xref="InterPro:IPR001241"
                     /db_xref="InterPro:IPR002288"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR006171"
                     /db_xref="InterPro:IPR011557"
                     /db_xref="InterPro:IPR013506"
                     /db_xref="InterPro:IPR013759"
                     /db_xref="InterPro:IPR013760"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR018522"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR034160"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG10070"
                     /db_xref="UniProtKB/Swiss-Prot:P05652"
                     /translation="MEQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWE
                     IVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHA
                     GGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIG
                     ETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKN
                     EYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNN
                     INTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDP
                     QFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKA
                     RELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPL
                     RGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAH
                     IRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQTP
                     KPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGDKVEPRRN
                     FIEANARYVKNLDI*"
     gene            4867..6783
                     /gene="gyrB"
                     /locus_tag="BSU_00060"
                     /old_locus_tag="BSU00060"
     promotor_-10    complement(6412..6430)
                     /Source="Nicolas_upshift_promotors"
                     /id="U6"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1200
                     /SigmaFactorBS="cggcggctgcgcaatgtacacgtAGCCATtttcgataatttg
                     gcGCATATATCTGTAAAAGAAcgttaacagcagtgttctgatgtgcgcgccgtcaaca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(6414)
                     /Source="Nicolas_upshifts"
                     /id="U6"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1200
                     /SigmaFactorBS="cggcggctgcgcaatgtacacgtAGCCATtttcgataatttg
                     gcGCATATATCTGTAAAAGAAcgttaacagcagtgttctgatgtgcgcgccgtcaaca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(6446..6451)
                     /Source="Nicolas_upshift_promotors"
                     /id="U6"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1200
                     /SigmaFactorBS="cggcggctgcgcaatgtacacgtAGCCATtttcgataatttg
                     gcGCATATATCTGTAAAAGAAcgttaacagcagtgttctgatgtgcgcgccgtcaaca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       6784..6993
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_6784_6993"
                     /HighExp="Cold, H2O2, G180, Oxctl, G135, G150, Sw, dia15,
                     LBGexp, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S6"
     CDS             6994..9459
                     /gene="gyrA"
                     /locus_tag="BSU_00070"
                     /old_locus_tag="BSU00070"
                     /EC_number="5.99.1.3"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 12767818, 17320901, 27557712"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 12767818,
                     17320901, 27557712; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase (subunit A)"
                     /protein_id="NP_387888.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00070"
                     /db_xref="EnsemblGenomes-Tr:CAB11783"
                     /db_xref="GOA:P05653"
                     /db_xref="InterPro:IPR002205"
                     /db_xref="InterPro:IPR005743"
                     /db_xref="InterPro:IPR006691"
                     /db_xref="InterPro:IPR013757"
                     /db_xref="InterPro:IPR013758"
                     /db_xref="InterPro:IPR013760"
                     /db_xref="InterPro:IPR024946"
                     /db_xref="InterPro:IPR035516"
                     /db_xref="PDB:4DDQ"
                     /db_xref="SubtiList:BG10071"
                     /db_xref="UniProtKB/Swiss-Prot:P05653"
                     /translation="MSEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKP
                     VHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYM
                     LVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVM
                     PSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDF
                     PTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEK
                     IADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINL
                     LALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDA
                     VISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKL
                     IAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVV
                     TLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKV
                     YRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKR
                     TSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMG
                     RTAAGVKGITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKT
                     AKITENNGQLVAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEE
                     HVATVALVEKNEEDENEEEQEEV*"
     gene            6994..9459
                     /gene="gyrA"
                     /locus_tag="BSU_00070"
                     /old_locus_tag="BSU00070"
     promotor_-35    9373..9376
                     /Source="Nicolas_upshift_promotors"
                     /id="U7"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.9000999000999"
                     /xcortree=2642
                     /SigmaFactorBS="tggacatcaatgatatctccatcaccggacgtgtcactcaag
                     gtgtgcgtctcatcagaATGGcagaagaagagcatgtTGCTACAGTAGCTTTAGTtga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        9374
                     /Source="Nicolas_upshifts"
                     /id="U7"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.9000999000999"
                     /xcortree=2642
                     /SigmaFactorBS="tggacatcaatgatatctccatcaccggacgtgtcactcaag
                     gtgtgcgtctcatcagaATGGcagaagaagagcatgtTGCTACAGTAGCTTTAGTtga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    9393..9410
                     /Source="Nicolas_upshift_promotors"
                     /id="U7"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.9000999000999"
                     /xcortree=2642
                     /SigmaFactorBS="tggacatcaatgatatctccatcaccggacgtgtcactcaag
                     gtgtgcgtctcatcagaATGGcagaagaagagcatgtTGCTACAGTAGCTTTAGTtga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      9440
                     /Source="Nicolas_upshifts"
                     /id="D2"
                     /incds=0
                     /nref=251
                     /ntot=261
                     /MaxReadThrough="3.73971"
                     /MaxDrop="8.1288"
                     /score="33.5021066"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U4"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    9504..9510
                     /Source="Nicolas_upshift_promotors"
                     /id="U8"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.798201798201798"
                     /psig=1
                     /xcortree=2622
                     /SigmaFactorBS="cagctgaaatagctgcgcttttttgtgtcataaccCTTTACA
                     gtcataaaaattaTGGTATAATCATTTCTGTTGtctttttaaagacacaagcatgacc
                     a"
                     /listShort="S7, rrnO-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    9524..9543
                     /Source="Nicolas_upshift_promotors"
                     /id="U8"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.798201798201798"
                     /psig=1
                     /xcortree=2622
                     /SigmaFactorBS="cagctgaaatagctgcgcttttttgtgtcataaccCTTTACA
                     gtcataaaaattaTGGTATAATCATTTCTGTTGtctttttaaagacacaagcatgacc
                     a"
                     /listShort="S7, rrnO-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       9529..9614
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_9529_9614"
                     /HighExp="LBGstat, H2O2, Paraq, Oxctl, UNK1, LBGexp, LPhT,
                     MG-0.2, MG 25, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S7"
     upshifts        9529
                     /Source="Nicolas_upshifts"
                     /id="U8"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.798201798201798"
                     /psig=1
                     /xcortree=2622
                     /SigmaFactorBS="cagctgaaatagctgcgcttttttgtgtcataaccCTTTACA
                     gtcataaaaattaTGGTATAATCATTTCTGTTGtctttttaaagacacaagcatgacc
                     a"
                     /listShort="S7, rrnO-16S"
                     /GFF_Attribute="listLong"
     promotor_-35    9600..9607
                     /Source="Nicolas_upshift_promotors"
                     /id="U9"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.889110889110889"
                     /psig=1
                     /xcortree=2634
                     /SigmaFactorBS="cacaagcatgaccattatgactagtaaaaactttttcaaaaa
                     agTATTGACCtagttaactaaaaaTGTTACTATTAAGTAGTCGCtttgagagaagcac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        9616
                     /Source="Nicolas_upshifts"
                     /id="U9"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.889110889110889"
                     /psig=1
                     /xcortree=2634
                     /SigmaFactorBS="cacaagcatgaccattatgactagtaaaaactttttcaaaaa
                     agTATTGACCtagttaactaaaaaTGTTACTATTAAGTAGTCGCtttgagagaagcac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    9622..9641
                     /Source="Nicolas_upshift_promotors"
                     /id="U9"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.889110889110889"
                     /psig=1
                     /xcortree=2634
                     /SigmaFactorBS="cacaagcatgaccattatgactagtaaaaactttttcaaaaa
                     agTATTGACCtagttaactaaaaaTGTTACTATTAAGTAGTCGCtttgagagaagcac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     rRNA            9810..11364
                     /gene="rrnO-16S"
                     /locus_tag="BSU_rRNA_1"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            9810..11364
                     /gene="rrnO-16S"
                     /locus_tag="BSU_rRNA_1"
     tRNA            11464..11540
                     /gene="trnO-Ile"
                     /locus_tag="BSU_tRNA_5"
                     /product="tRNA-Ile"
                     /inference="profile:tRNAscan:1.23"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            11464..11540
                     /gene="trnO-Ile"
                     /locus_tag="BSU_tRNA_5"
     tRNA            11552..11627
                     /gene="trnO-Ala"
                     /locus_tag="BSU_tRNA_6"
                     /product="tRNA-Ala"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ala(UGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            11552..11627
                     /gene="trnO-Ala"
                     /locus_tag="BSU_tRNA_6"
     rRNA            11709..14636
                     /gene="rrnO-23S"
                     /locus_tag="BSU_rRNA_2"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            11709..14636
                     /gene="rrnO-23S"
                     /locus_tag="BSU_rRNA_2"
     rRNA            14692..14810
                     /gene="rrnO-5S"
                     /locus_tag="BSU_rRNA_3"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            14692..14810
                     /gene="rrnO-5S"
                     /locus_tag="BSU_rRNA_3"
     S_feature       14811..15868
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_14811_15868"
                     /HighExp="G180, T0.0H, T0.30H, G135, T-0.40H, LBGstat,
                     Cold, Paraq, C30, Oxctl"
                     /AntisenseName="yaaC"
                     /AntisenseCor="-4.5985764709218099E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S8"
     CDS             complement(14847..15794)
                     /gene="yaaC"
                     /locus_tag="BSU_00080"
                     /old_locus_tag="BSU00080"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22333191"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_387889.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00080"
                     /db_xref="EnsemblGenomes-Tr:CAB11784"
                     /db_xref="InterPro:IPR026988"
                     /db_xref="SubtiList:BG10072"
                     /db_xref="UniProtKB/Swiss-Prot:P37526"
                     /translation="MTYHEWKDLALFYSVESTQKFLEKVYILNGINDAKKNSFKNSER
                     FIYFLKHAESFYKQAAYSPLEIKPILLFYGMAQLIKACLITRDPHYPSHTSVLAHGVT
                     TRKRKKQNYCFSDDEVKIQRNGLCVHFMKHLFGQSDIVDERYTMKKLLMAIPELSDIF
                     YFQQKERFMTKVEKDKNEIFVPEEVVINYKMSDSRFAEYMSHHYQWSFTKKNEHGLLF
                     EISPQDKEPWTSTSLLFDMEKNQYYIPSQREQFLRLPEMTIHYLILYNVGMIARYETE
                     WWYELLTQHISDDYVLIQQFLLVSEKKFPKYASQFLLHF*"
     gene            complement(14847..15794)
                     /gene="yaaC"
                     /locus_tag="BSU_00080"
                     /old_locus_tag="BSU00080"
     promotor_-35    15847..15854
                     /Source="Nicolas_upshift_promotors"
                     /id="U10"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig=1
                     /xcortree=2668
                     /SigmaFactorBS="ctttccgttatctaaatatttcaactctttcccgcttCCTTG
                     ACAtgctcttggctagtTGATAATCTACATATAATATtttgccgaaaagagggggatt
                     t"
                     /listShort="guaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    15869..15888
                     /Source="Nicolas_upshift_promotors"
                     /id="U10"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig=1
                     /xcortree=2668
                     /SigmaFactorBS="ctttccgttatctaaatatttcaactctttcccgcttCCTTG
                     ACAtgctcttggctagtTGATAATCTACATATAATATtttgccgaaaagagggggatt
                     t"
                     /listShort="guaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        15870
                     /Source="Nicolas_upshifts"
                     /id="U10"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig=1
                     /xcortree=2668
                     /SigmaFactorBS="ctttccgttatctaaatatttcaactctttcccgcttCCTTG
                     ACAtgctcttggctagtTGATAATCTACATATAATATtttgccgaaaagagggggatt
                     t"
                     /listShort="guaB"
                     /GFF_Attribute="listLong"
     upshifts        complement(15875)
                     /Source="Nicolas_upshifts"
                     /id="U11"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.89010989010989"
                     /psig="0.89010989010989"
                     /xcortree=947
                     /SigmaFactorBS="tgaaaatttactttcccacaTTAGTAAatccccctcttttCG
                     GCAAAATATTatatgtagattatcaactagccaagagcatgtcaaggaagcgggaaag
                     a"
                     /listShort="yaaC"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(15884..15895)
                     /Source="Nicolas_upshift_promotors"
                     /id="U11"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.89010989010989"
                     /psig="0.89010989010989"
                     /xcortree=947
                     /SigmaFactorBS="tgaaaatttactttcccacaTTAGTAAatccccctcttttCG
                     GCAAAATATTatatgtagattatcaactagccaagagcatgtcaaggaagcgggaaag
                     a"
                     /listShort="yaaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(15909..15915)
                     /Source="Nicolas_upshift_promotors"
                     /id="U11"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.89010989010989"
                     /psig="0.89010989010989"
                     /xcortree=947
                     /SigmaFactorBS="tgaaaatttactttcccacaTTAGTAAatccccctcttttCG
                     GCAAAATATTatatgtagattatcaactagccaagagcatgtcaaggaagcgggaaag
                     a"
                     /listShort="yaaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             15915..17381
                     /gene="guaB"
                     /locus_tag="BSU_00090"
                     /old_locus_tag="BSU00090"
                     /EC_number="1.1.1.205"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 1722815, 17611193, 1979163, 3125411,
                     8917437"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 1722815,
                     17611193, 1979163, 3125411, 8917437; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="inosine-monophosphate dehydrogenase"
                     /protein_id="NP_387890.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00090"
                     /db_xref="EnsemblGenomes-Tr:CAB11785"
                     /db_xref="GOA:P21879"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR001093"
                     /db_xref="InterPro:IPR005990"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR015875"
                     /db_xref="SubtiList:BG10073"
                     /db_xref="UniProtKB/Swiss-Prot:P21879"
                     /translation="MWESKFSKEGLTFDDVLLVPAKSEVLPRDVDLSVELTKTLKLNI
                     PVISAGMDTVTESAMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSERGVITNPFFL
                     TPDHQVFDAEHLMGKYRISGVPIVNNEEDQKLVGIITNRDLRFISDYSMKISDVMTKE
                     ELVTASVGTTLDEAEKILQKHKIEKLPLVDDQNKLKGLITIKDIEKVIEFPNSSKDIH
                     GRLIVGAAVGVTGDTMTRVKKLVEANVDVIVIDTAHGHSQGVLNTVTKIRETYPELNI
                     IAGNVATAEATRALIEAGADVVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKH
                     GKTIIADGGIKFSGDITKALAAGGHAVMLGSLLAGTSESPGETEIYQGRRFKVYRGMG
                     SVAAMEKGSKDRYFQEENKKFVPEGIEGRTPYKGPVEETVYQLVGGLRSGMGYCGSKD
                     LRALREEAQFIRMTGAGLRESHPHDVQITKESPNYTIS*"
     gene            15915..17381
                     /gene="guaB"
                     /locus_tag="BSU_00090"
                     /old_locus_tag="BSU00090"
     downshifts      complement(15919)
                     /Source="Nicolas_upshifts"
                     /id="D3"
                     /incds=0
                     /nref=33
                     /ntot=102
                     /MaxReadThrough="1.81989"
                     /MaxDrop="4.44626"
                     /score="-6.76739893"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U12"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_no_box complement(15945..16045)
                     /Source="Nicolas_upshift_promotors"
                     /id="U12"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.922077922077922"
                     /psig="0.016983016983017"
                     /xcortree=82
                     /SigmaFactorBS="atatttagctttaacgtttttgtaagttctacagataaatcc
                     acatcacgcggaagtacctcagactttgctggtacaagcagcacatcgtcgaacgtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(15985)
                     /Source="Nicolas_upshifts"
                     /id="U12"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.922077922077922"
                     /psig="0.016983016983017"
                     /xcortree=82
                     /SigmaFactorBS="atatttagctttaacgtttttgtaagttctacagataaatcc
                     acatcacgcggaagtacctcagactttgctggtacaagcagcacatcgtcgaacgtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     S_feature       complement(17238..17833)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_17238_17833_c"
                     /HighExp="Etha, Gly, C30, Salt, S8, S6, HiTm, S7, Sw, C90"
                     /AntisenseName="dacA"
                     /AntisenseCor="-0.39306815699287101"
                     /AntisenseRegPval="-10.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S9"
     downshifts      17369
                     /Source="Nicolas_upshifts"
                     /id="D4"
                     /incds=0
                     /nref=243
                     /ntot=277
                     /MaxReadThrough="3.34899"
                     /MaxDrop="7.78161"
                     /score="26.7620012"
                     /energy="-10.6"
                     /TU="NA"
                     /idTUdmin="U10"
                     /TUdmin="-14"
                     /isTUend="TRUE"
     promotor_-35    17427..17431
                     /Source="Nicolas_upshift_promotors"
                     /id="U13"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2602
                     /SigmaFactorBS="aaattaaaaacatttgacagggtctctgactctgTCTATttt
                     ttttatactgatTATGATAAAATTTATACTGTtgtgcattgaaaatgtccttaacggc
                     t"
                     /listShort="S10, dacA, S11, S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    17447..17466
                     /Source="Nicolas_upshift_promotors"
                     /id="U13"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2602
                     /SigmaFactorBS="aaattaaaaacatttgacagggtctctgactctgTCTATttt
                     ttttatactgatTATGATAAAATTTATACTGTtgtgcattgaaaatgtccttaacggc
                     t"
                     /listShort="S10, dacA, S11, S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       17453..17533
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_17453_17533"
                     /HighExp="C30, LBGstat, G180, G150, LBGexp, G135, Lbexp,
                     Oxctl, dia0, MG 25"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S10"
     upshifts        17453
                     /Source="Nicolas_upshifts"
                     /id="U13"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2602
                     /SigmaFactorBS="aaattaaaaacatttgacagggtctctgactctgTCTATttt
                     ttttatactgatTATGATAAAATTTATACTGTtgtgcattgaaaatgtccttaacggc
                     t"
                     /listShort="S10, dacA, S11, S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
     CDS             17534..18865
                     /gene="dacA"
                     /locus_tag="BSU_00100"
                     /old_locus_tag="BSU00100"
                     /EC_number="3.4.16.4"
                     /experiment="publication(s) with functional evidences,
                     PMID:8370539, 9864321, 10383963, 21378199"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8370539, 9864321,
                     10383963, 21378199; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase
                     (penicillin-binding protein 5)"
                     /protein_id="NP_387891.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00100"
                     /db_xref="EnsemblGenomes-Tr:CAB11786"
                     /db_xref="GOA:P08750"
                     /db_xref="InterPro:IPR001967"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR012907"
                     /db_xref="InterPro:IPR015956"
                     /db_xref="InterPro:IPR018044"
                     /db_xref="InterPro:IPR037167"
                     /db_xref="SubtiList:BG10074"
                     /db_xref="UniProtKB/Swiss-Prot:P08750"
                     /translation="MNIKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAI
                     MIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEIS
                     QDNSLSNVPLRKDGKYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKE
                     LGLTDYKFVNATGLENKDLHGHQPEGTSVNEESEVSAKDMAVLADHLITDYPEILETS
                     SIAKTKFREGTDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERN
                     GMRVITVVLNAKGNLHTGRFDETKKMFDYAFDNFSMKEIYAEGDQVKGHKTISVDKGK
                     EKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKDNLTAPVKKGTKVGKLTAEYTGDEKD
                     YGFLNSDLAGVDLVTKENVEKANWFVLTMRSIGGFFAGIWGSIVDTVTGWF*"
     gene            17534..18865
                     /gene="dacA"
                     /locus_tag="BSU_00100"
                     /old_locus_tag="BSU00100"
     promotor_-10    complement(17822..17840)
                     /Source="Nicolas_upshift_promotors"
                     /id="U14"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=212
                     /SigmaFactorBS="tactgtgtatttcccgtctttccgaagaggaaCGTTTGAtaa
                     gctgttatcttGGGAAATTTCATACACATAgtcatcaggcgtataggtttggtcccat
                     t"
                     /listShort="S9"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(17833)
                     /Source="Nicolas_upshifts"
                     /id="U14"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=212
                     /SigmaFactorBS="tactgtgtatttcccgtctttccgaagaggaaCGTTTGAtaa
                     gctgttatcttGGGAAATTTCATACACATAgtcatcaggcgtataggtttggtcccat
                     t"
                     /listShort="S9"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(17855..17861)
                     /Source="Nicolas_upshift_promotors"
                     /id="U14"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=212
                     /SigmaFactorBS="tactgtgtatttcccgtctttccgaagaggaaCGTTTGAtaa
                     gctgttatcttGGGAAATTTCATACACATAgtcatcaggcgtataggtttggtcccat
                     t"
                     /listShort="S9"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      18747
                     /Source="Nicolas_upshifts"
                     /id="D5"
                     /incds=1
                     /nref=1
                     /ntot=20
                     /MaxReadThrough="6.76335"
                     /MaxDrop="2.1925"
                     /score="26.7620012"
                     /energy="-10.6"
                     /TU="U13"
                     /idTUdmin="U10"
                     /TUdmin=1364
                     /isTUend="FALSE"
     S_feature       18866..18974
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_18866_18974"
                     /HighExp="C30, MG 15, MG 10, MG-0.1, MG 25, BMM, ferm,
                     Cold, MG 60, MG-0.2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S11"
     promotor_-35    18944..18947
                     /Source="Nicolas_upshift_promotors"
                     /id="U15"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.61038961038961"
                     /psig="0.998001998001998"
                     /xcortree=2311
                     /SigmaFactorBS="gaaaaaacccaatttttaataaaaaatgATTTtcaaagcgct
                     aaaaACCGAATAAAATAGTATATAtgcatatgaattattggatttctaggatacaata
                     a"
                     /listShort="S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    18962..18981
                     /Source="Nicolas_upshift_promotors"
                     /id="U15"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.61038961038961"
                     /psig="0.998001998001998"
                     /xcortree=2311
                     /SigmaFactorBS="gaaaaaacccaatttttaataaaaaatgATTTtcaaagcgct
                     aaaaACCGAATAAAATAGTATATAtgcatatgaattattggatttctaggatacaata
                     a"
                     /listShort="S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       18976..19061
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_18976_19061"
                     /HighExp="BMM, MG 25, SMM, MG 15, UNK1, MG 10, GM 150,
                     MG-0.1, MG 150, MG 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S12"
     upshifts        18976
                     /Source="Nicolas_upshifts"
                     /id="U15"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.61038961038961"
                     /psig="0.998001998001998"
                     /xcortree=2311
                     /SigmaFactorBS="gaaaaaacccaatttttaataaaaaatgATTTtcaaagcgct
                     aaaaACCGAATAAAATAGTATATAtgcatatgaattattggatttctaggatacaata
                     a"
                     /listShort="S12, pdxS, pdxT, NA, serS"
                     /GFF_Attribute="listLong"
     CDS             19062..19946
                     /gene="pdxS"
                     /locus_tag="BSU_00110"
                     /old_locus_tag="BSU00110"
                     /EC_number="4.3.3.6"
                     /EC_number="4.-.-.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14762015, 15771487, 15911615, 16157873, 17144654"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14762015, 15771487,
                     15911615, 16157873, 17144654; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase for pyridoxal
                     phosphate synthesis; pyridoxal 5'-phosphate synthase
                     complex, synthase subunit"
                     /protein_id="NP_387892.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00110"
                     /db_xref="EnsemblGenomes-Tr:CAB11787"
                     /db_xref="GOA:P37527"
                     /db_xref="InterPro:IPR001852"
                     /db_xref="InterPro:IPR011060"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR033755"
                     /db_xref="PDB:2NV1"
                     /db_xref="PDB:2NV2"
                     /db_xref="SubtiList:BG10075"
                     /db_xref="UniProtKB/Swiss-Prot:P37527"
                     /translation="MAQTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMA
                     LERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYID
                     ESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEA
                     VRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATP
                     ADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMK
                     GIEISNLLPEQRMQERGW*"
     gene            19062..19946
                     /gene="pdxS"
                     /locus_tag="BSU_00110"
                     /old_locus_tag="BSU00110"
     S_feature       complement(19194..19923)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_19194_19923_c"
                     /HighExp="S6, S8, S7, S5, S4, C30, S3, BT, C90, Gly"
                     /AntisenseName="pdxS"
                     /AntisenseCor="-0.65390240445415004"
                     /AntisenseRegPval="-33.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S13"
     promotor_-10    complement(19911..19929)
                     /Source="Nicolas_upshift_promotors"
                     /id="U16"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1195
                     /SigmaFactorBS="cacctattgttaacatgtcagcagcgctcctatGTTCTTacc
                     agccgcgttcttGCATACGCTGTTCTGGAAGtaagtttgagatttcaatccctttcat
                     t"
                     /listShort="S13"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(19923)
                     /Source="Nicolas_upshifts"
                     /id="U16"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1195
                     /SigmaFactorBS="cacctattgttaacatgtcagcagcgctcctatGTTCTTacc
                     agccgcgttcttGCATACGCTGTTCTGGAAGtaagtttgagatttcaatccctttcat
                     t"
                     /listShort="S13"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(19945..19950)
                     /Source="Nicolas_upshift_promotors"
                     /id="U16"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1195
                     /SigmaFactorBS="cacctattgttaacatgtcagcagcgctcctatGTTCTTacc
                     agccgcgttcttGCATACGCTGTTCTGGAAGtaagtttgagatttcaatccctttcat
                     t"
                     /listShort="S13"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             19968..20558
                     /gene="pdxT"
                     /locus_tag="BSU_00120"
                     /old_locus_tag="BSU00120"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14585832, 14762015, 15771487, 17144654, 18271580,
                     26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14585832, 14762015,
                     15771487, 17144654, 18271580, 26735940; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase for pyridoxal
                     phosphate synthesis; pyridoxal 5'-phosphate synthase
                     complex, glutamine amidotransferase subunit PdxT"
                     /protein_id="NP_387893.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00120"
                     /db_xref="EnsemblGenomes-Tr:CAB11788"
                     /db_xref="GOA:P37528"
                     /db_xref="InterPro:IPR002161"
                     /db_xref="InterPro:IPR021196"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="PDB:1R9G"
                     /db_xref="PDB:2NV0"
                     /db_xref="PDB:2NV2"
                     /db_xref="SubtiList:BG10076"
                     /db_xref="UniProtKB/Swiss-Prot:P37528"
                     /translation="MLTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLIL
                     PGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNV
                     VVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIVAAK
                     QGQFLGCSFHPELTEDHRVTQLFVEMVEEYKQKALV*"
     gene            19968..20558
                     /gene="pdxT"
                     /locus_tag="BSU_00120"
                     /old_locus_tag="BSU00120"
     misc_RNA        20611..20823
                     /gene="tboS"
                     /locus_tag="BSU_misc_RNA_1"
                     /product="T-box riboswitch specific of serine tRNA ligase"
                     /experiment="publication(s) with functional evidences,
                     PMID:1317842, 9098041, 12165569, 12547201"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1317842, 9098041,
                     12165569, 12547201; Product type n: RNA"
                     /function="16.3: Control"
     gene            20611..20823
                     /gene="tboS"
                     /locus_tag="BSU_misc_RNA_1"
     downshifts      20788
                     /Source="Nicolas_upshifts"
                     /id="D6"
                     /incds=0
                     /nref=9
                     /ntot=80
                     /MaxReadThrough="7.14793"
                     /MaxDrop="4.37654"
                     /score="41.1243331"
                     /energy="-23.3"
                     /TU="U13,U15"
                     /idTUdmin="U13"
                     /TUdmin="-1347"
                     /isTUend="FALSE"
     CDS             20880..22157
                     /gene="serS"
                     /locus_tag="BSU_00130"
                     /old_locus_tag="BSU00130"
                     /EC_number="6.1.1.11"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10546897, 12682299, 14732487"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10546897, 12682299,
                     14732487; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="seryl-tRNA synthetase"
                     /protein_id="NP_387894.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00130"
                     /db_xref="EnsemblGenomes-Tr:CAB11789"
                     /db_xref="GOA:P37464"
                     /db_xref="InterPro:IPR002314"
                     /db_xref="InterPro:IPR002317"
                     /db_xref="InterPro:IPR006195"
                     /db_xref="InterPro:IPR010978"
                     /db_xref="InterPro:IPR015866"
                     /db_xref="InterPro:IPR033729"
                     /db_xref="SubtiList:BG10077"
                     /db_xref="UniProtKB/Swiss-Prot:P37464"
                     /translation="MLDTKMLRANFQEIKAKLVHKGEDLTDFDKFEALDDRRRELIGK
                     VEELKGKRNEVSQQVAVLKREKKDADHIIKEMREVGEEIKKLDEELRTVEAELDTILL
                     SIPNIPHESVPVGETEDDNVEVRKWGEKPSFAYEPKPHWDIADELGILDFERAAKVTG
                     SRFVFYKGLGARLERALYNFMLDLHVDEYNYTEVIPPYMVNRASMTGTGQLPKFEEDA
                     FKIREEDYFLIPTAEVPITNMHRDEILSGDSLPINYAAFSACFRSEAGSAGRDTRGLI
                     RQHQFNKVELVKFVKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKK
                     YDIEVWIPSQDTYREISSCSNFEAFQARRANIRFRREAKGKPEHVHTLNGSGLAVGRT
                     VAAILENYQQEDGSVVIPKVLRPYMGNREVMKP*"
     gene            20880..22157
                     /gene="serS"
                     /locus_tag="BSU_00130"
                     /old_locus_tag="BSU00130"
     downshifts      22135
                     /Source="Nicolas_upshifts"
                     /id="D7"
                     /incds=0
                     /nref=234
                     /ntot=255
                     /MaxReadThrough="0.83411"
                     /MaxDrop="7.38039"
                     /score="17.6549558"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U13"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    22246..22253
                     /Source="Nicolas_upshift_promotors"
                     /id="U17"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig=1
                     /xcortree=2413
                     /SigmaFactorBS="cggcattttcataaaaacaaaaaaagtttttaaaaatgCTTG
                     ACCAcacgagaacatacgTGATATAGTTAGTCTTGTCGatacggaggaatacccaagt
                     c"
                     /listShort="trnSL-Ser1, S14, S15"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    22268..22287
                     /Source="Nicolas_upshift_promotors"
                     /id="U17"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig=1
                     /xcortree=2413
                     /SigmaFactorBS="cggcattttcataaaaacaaaaaaagtttttaaaaatgCTTG
                     ACCAcacgagaacatacgTGATATAGTTAGTCTTGTCGatacggaggaatacccaagt
                     c"
                     /listShort="trnSL-Ser1, S14, S15"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        22268
                     /Source="Nicolas_upshifts"
                     /id="U17"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig=1
                     /xcortree=2413
                     /SigmaFactorBS="cggcattttcataaaaacaaaaaaagtttttaaaaatgCTTG
                     ACCAcacgagaacatacgTGATATAGTTAGTCTTGTCGatacggaggaatacccaagt
                     c"
                     /listShort="trnSL-Ser1, S14, S15"
                     /GFF_Attribute="listLong"
     tRNA            22292..22384
                     /gene="trnSL-Ser1"
                     /locus_tag="BSU_tRNA_7"
                     /product="tRNA-Ser"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ser(UGA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            22292..22384
                     /gene="trnSL-Ser1"
                     /locus_tag="BSU_tRNA_7"
     downshifts      22407
                     /Source="Nicolas_upshifts"
                     /id="D8"
                     /incds=0
                     /nref=168
                     /ntot=196
                     /MaxReadThrough="5.02201"
                     /MaxDrop="8.36635"
                     /score="29.7083093"
                     /energy="-12.4"
                     /TU="U17"
                     /idTUdmin="U13"
                     /TUdmin=272
                     /isTUend="FALSE"
     S_feature       22452..22529
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_22452_22529"
                     /HighExp="Cold, H2O2, G180, Paraq, Oxctl, C30, G150, G135,
                     BMM, Heat"
                     /AntisenseName="dck"
                     /AntisenseCor="0.61769771609764101"
                     /AntisenseRegPval="-29"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S14"
     CDS             complement(22496..23149)
                     /gene="dck"
                     /locus_tag="BSU_00140"
                     /old_locus_tag="BSU00140"
                     /EC_number="2.7.1.76"
                     /EC_number="2.7.1.74"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:6251049, 11078735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 6251049, 11078735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyadenosine/deoxycytidine kinase"
                     /protein_id="NP_387895.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00140"
                     /db_xref="EnsemblGenomes-Tr:CAB11790"
                     /db_xref="GOA:P37529"
                     /db_xref="InterPro:IPR002624"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031314"
                     /db_xref="SubtiList:BG10078"
                     /db_xref="UniProtKB/Swiss-Prot:P37529"
                     /translation="MKEHHIPKNSIITVAGTVGVGKSTLTKTLAKRLGFKTSLEEVDH
                     NPYLEKFYHDFERWSFHLQIYFLAERFKEQKTIFEAGGGFVQDRSIYEDTGIFAKMHA
                     DKGTMSKVDYKTYTSLFEAMVMTPYFPHPDVLIYLEGDLENILNRIEQRGREMELQTS
                     RSYWEEMHTRYENWISGFNACPVLKLRIEDYDLLNDENSIENIVDQIASVIHDNQKK*
                     "
     gene            complement(22496..23149)
                     /gene="dck"
                     /locus_tag="BSU_00140"
                     /old_locus_tag="BSU00140"
     promotor_-35    22515..22521
                     /Source="Nicolas_upshift_promotors"
                     /id="U18"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="Sig-"
                     /pcomp="0.474525474525474"
                     /psig="0.474525474525474"
                     /xcortree=1189
                     /SigmaFactorBS="agaaaaagtgaatctcgactgagattcactttttttgattat
                     caTGAATAActgaagcaatttgATCTACAATATTttcaatcgagttttcgtcgttcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(22520)
                     /Source="Nicolas_upshifts"
                     /id="D9"
                     /incds=0
                     /nref=88
                     /ntot=213
                     /MaxReadThrough="1.96668"
                     /MaxDrop="4.49235"
                     /score="14.5948578"
                     /energy="-11"
                     /TU="NA"
                     /idTUdmin="U19"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     S_feature       22531..23167
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_22531_23167"
                     /HighExp="G180, G135, Cold, C30, Paraq, H2O2, Oxctl, G150,
                     S5, S6"
                     /AntisenseName="dck"
                     /AntisenseCor="0.15155468296621499"
                     /AntisenseRegPval="-1.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S15"
     upshifts        22531
                     /Source="Nicolas_upshifts"
                     /id="U18"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="Sig-"
                     /pcomp="0.474525474525474"
                     /psig="0.474525474525474"
                     /xcortree=1189
                     /SigmaFactorBS="agaaaaagtgaatctcgactgagattcactttttttgattat
                     caTGAATAActgaagcaatttgATCTACAATATTttcaatcgagttttcgtcgttcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    22535..22546
                     /Source="Nicolas_upshift_promotors"
                     /id="U18"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="Sig-"
                     /pcomp="0.474525474525474"
                     /psig="0.474525474525474"
                     /xcortree=1189
                     /SigmaFactorBS="agaaaaagtgaatctcgactgagattcactttttttgattat
                     caTGAATAActgaagcaatttgATCTACAATATTttcaatcgagttttcgtcgttcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             complement(23146..23769)
                     /gene="dgk"
                     /locus_tag="BSU_00150"
                     /old_locus_tag="BSU00150"
                     /EC_number="2.7.1.113"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11078735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11078735; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosine kinase"
                     /protein_id="NP_387896.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00150"
                     /db_xref="EnsemblGenomes-Tr:CAB11791"
                     /db_xref="GOA:P37530"
                     /db_xref="InterPro:IPR002624"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031314"
                     /db_xref="SubtiList:BG10079"
                     /db_xref="UniProtKB/Swiss-Prot:P37530"
                     /translation="MNTAPFIAIEGPIGAGKTTLATMLSQKFGFPMINEIVEDNPYLD
                     KFYDNIKEWSFQLEMFFLCHRYKQLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSP
                     HQLEKYKKIYHLLTDDLPKPNFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLIS
                     DYEVAIKQLQEADPELTVLTVDGDSKDFVLNKSDFERIAAHVKELIV*"
     gene            complement(23146..23769)
                     /gene="dgk"
                     /locus_tag="BSU_00150"
                     /old_locus_tag="BSU00150"
     promotor_-10    complement(23810..23829)
                     /Source="Nicolas_upshift_promotors"
                     /id="U19"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2605
                     /SigmaFactorBS="gtcaaaaagacgtttcgataatttggaaacgtcttttttTCA
                     TGggggcacccaagggtTGTGATACAATATGAAGGTCggtaactgacgcacgtttttc
                     a"
                     /listShort="dgk, dck"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(23828)
                     /Source="Nicolas_upshifts"
                     /id="U19"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2605
                     /SigmaFactorBS="gtcaaaaagacgtttcgataatttggaaacgtcttttttTCA
                     TGggggcacccaagggtTGTGATACAATATGAAGGTCggtaactgacgcacgtttttc
                     a"
                     /listShort="dgk, dck"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(23845..23849)
                     /Source="Nicolas_upshift_promotors"
                     /id="U19"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig=1
                     /xcortree=2605
                     /SigmaFactorBS="gtcaaaaagacgtttcgataatttggaaacgtcttttttTCA
                     TGggggcacccaagggtTGTGATACAATATGAAGGTCggtaactgacgcacgtttttc
                     a"
                     /listShort="dgk, dck"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(23868..25151)
                     /gene="sleL"
                     /locus_tag="BSU_00160"
                     /old_locus_tag="BSU00160"
                     /EC_number="3.2.1.-"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11011148, 11737650,
                     12177332, 10419957, 18456807, 18835992, 19933362,
                     28333204; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="spore peptidoglycan N-acetylglucosaminidase"
                     /protein_id="NP_387897.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00160"
                     /db_xref="EnsemblGenomes-Tr:CAB11792"
                     /db_xref="GOA:P37531"
                     /db_xref="InterPro:IPR001223"
                     /db_xref="InterPro:IPR011583"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="SubtiList:BG10080"
                     /db_xref="UniProtKB/Swiss-Prot:P37531"
                     /translation="MVKQGDTLSAIASQYRTTTNDITETNEIPNPDSLVVGQTIVIPI
                     AGQFYDVKRGDTLTSIARQFNTTAAELARVNRIQLNTVLQIGFRLYIPPAPKRDIESN
                     AYLEPRGNQVSENLQQAAREASPYLTYLGAFSFQAQRNGTLVAPPLTNLRSITESQNT
                     TLMMIITNLENQAFSDELGRILLNDETVKRRLLNEIVENARRYGFRDIHFDFEYLRPQ
                     DREAYNQFLREARDLFHREGLEISTALAPKTSATQQGRWYEAHDYRAHGEIVDFVVLM
                     TYEWGYSGGPPQAVSPIGPVRDVIEYALTEMPANKIVMGQNLYGYDWTLPYTAGGTPA
                     RAVSPQQAIVIADQNNASIQYDQTAQAPFFRYTDAENRRHEVWFEDARSIQAKFNLIK
                     ELNLRGISYWKLGLSFPQNWLLLSDQFNVVKKTFR*"
     gene            complement(23868..25151)
                     /gene="sleL"
                     /locus_tag="BSU_00160"
                     /old_locus_tag="BSU00160"
     downshifts      complement(23905)
                     /Source="Nicolas_upshifts"
                     /id="D10"
                     /incds=0
                     /nref=40
                     /ntot=61
                     /MaxReadThrough="1.17442"
                     /MaxDrop="6.30997"
                     /score="3.66560192"
                     /energy="-8.4"
                     /TU="NA"
                     /idTUdmin="U20"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(25182..25200)
                     /Source="Nicolas_upshift_promotors"
                     /id="U20"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1152
                     /SigmaFactorBS="tttcgcagaaattacgacggaagaacaaattatagaaaaata
                     AACATGatcagcgcttttcttTCATACATTGATAGCGATAtgaaaggaggcgtttttc
                     a"
                     /listShort="yaaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(25203)
                     /Source="Nicolas_upshifts"
                     /id="U20"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1152
                     /SigmaFactorBS="tttcgcagaaattacgacggaagaacaaattatagaaaaata
                     AACATGatcagcgcttttcttTCATACATTGATAGCGATAtgaaaggaggcgtttttc
                     a"
                     /listShort="yaaH"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(25216..25221)
                     /Source="Nicolas_upshift_promotors"
                     /id="U20"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1152
                     /SigmaFactorBS="tttcgcagaaattacgacggaagaacaaattatagaaaaata
                     AACATGatcagcgcttttcttTCATACATTGATAGCGATAtgaaaggaggcgtttttc
                     a"
                     /listShort="yaaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(25221..25766)
                     /gene="yaaI"
                     /locus_tag="BSU_00170"
                     /old_locus_tag="BSU00170"
                     /EC_number="3.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 2521622; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amidase (isochorismatase family)"
                     /protein_id="NP_387898.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00170"
                     /db_xref="EnsemblGenomes-Tr:CAB11793"
                     /db_xref="GOA:P37532"
                     /db_xref="InterPro:IPR000868"
                     /db_xref="InterPro:IPR036380"
                     /db_xref="SubtiList:BG10081"
                     /db_xref="UniProtKB/Swiss-Prot:P37532"
                     /translation="MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHAR
                     QNEWPIIYINDHYGLWQADIKNIQQECTNERSKDIITKIAPVDADYFLIKPKHSAFYE
                     TALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFA
                     LTMMENVLFAEITTEEQIIEK*"
     gene            complement(25221..25766)
                     /gene="yaaI"
                     /locus_tag="BSU_00170"
                     /old_locus_tag="BSU00170"
     promotor_-35    25632..25636
                     /Source="Nicolas_upshift_promotors"
                     /id="U21"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.99000999000999"
                     /xcortree=1810
                     /SigmaFactorBS="taatgatcattgatgtaaataatcggccattcattTTGTCtc
                     gcgtgctcctttAATGATAAAATATGAGGAACgattttttctgtttttttagcgaggg
                     t"
                     /listShort="S16, tadA, S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="promotor_-35"
     promotor_-10    25651..25670
                     /Source="Nicolas_upshift_promotors"
                     /id="U21"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.99000999000999"
                     /xcortree=1810
                     /SigmaFactorBS="taatgatcattgatgtaaataatcggccattcattTTGTCtc
                     gcgtgctcctttAATGATAAAATATGAGGAACgattttttctgtttttttagcgaggg
                     t"
                     /listShort="S16, tadA, S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="promotor_-10"
     S_feature       25655..25851
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_25655_25851"
                     /HighExp="Diami, dia5, H2O2, dia15, T0.30H, T-0.40H, HiOs,
                     T-1.10H, Salt, T0.0H"
                     /AntisenseName="yaaI"
                     /AntisenseCor="9.6546810160837798E-2"
                     /AntisenseRegPval="-0.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S16"
     upshifts        25657
                     /Source="Nicolas_upshifts"
                     /id="U21"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.99000999000999"
                     /xcortree=1810
                     /SigmaFactorBS="taatgatcattgatgtaaataatcggccattcattTTGTCtc
                     gcgtgctcctttAATGATAAAATATGAGGAACgattttttctgtttttttagcgaggg
                     t"
                     /listShort="S16, tadA, S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
     promotor_-10    complement(25791..25809)
                     /Source="Nicolas_upshift_promotors"
                     /id="U22"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=248
                     /SigmaFactorBS="aaagttcatcttgtgtcataaggataagctctcttttcaaAG
                     TTTTTtcattgcctaaaaaGGCTACATATTAACTATAActgaaacggaaaggagactg
                     t"
                     /listShort="yaaI, yaaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(25810)
                     /Source="Nicolas_upshifts"
                     /id="U22"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=248
                     /SigmaFactorBS="aaagttcatcttgtgtcataaggataagctctcttttcaaAG
                     TTTTTtcattgcctaaaaaGGCTACATATTAACTATAActgaaacggaaaggagactg
                     t"
                     /listShort="yaaI, yaaH"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(25824..25830)
                     /Source="Nicolas_upshift_promotors"
                     /id="U22"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=248
                     /SigmaFactorBS="aaagttcatcttgtgtcataaggataagctctcttttcaaAG
                     TTTTTtcattgcctaaaaaGGCTACATATTAACTATAActgaaacggaaaggagactg
                     t"
                     /listShort="yaaI, yaaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             25852..26337
                     /gene="tadA"
                     /locus_tag="BSU_00180"
                     /old_locus_tag="BSU00180"
                     /EC_number="3.5.4.33"
                     /function="10.3: tRNA and rRNA base modification"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15677468, 16014871,
                     16415880, 16700551, 23658230; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA specific adenosine A34 deaminase"
                     /protein_id="NP_387899.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00180"
                     /db_xref="EnsemblGenomes-Tr:CAB11794"
                     /db_xref="GOA:P21335"
                     /db_xref="InterPro:IPR002125"
                     /db_xref="InterPro:IPR016192"
                     /db_xref="InterPro:IPR016193"
                     /db_xref="InterPro:IPR028883"
                     /db_xref="SubtiList:BG10082"
                     /db_xref="UniProtKB/Swiss-Prot:P21335"
                     /translation="MTQDELYMKEAIKEAKKAEEKGEVPIGAVLVINGEIIARAHNLR
                     ETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGA
                     FDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEECGGMLSAFFRELRKKKKAARKNLS
                     E*"
     gene            25852..26337
                     /gene="tadA"
                     /locus_tag="BSU_00180"
                     /old_locus_tag="BSU00180"
     promotor_-35    26341..26347
                     /Source="Nicolas_upshift_promotors"
                     /id="U23"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.403596403596404"
                     /psig="0.899100899100899"
                     /xcortree=1436
                     /SigmaFactorBS="aacttgtctgaatagtacGGTTGCAatttttaggggaaACAG
                     ATATACTTAAGTGTGCatcgtaatagatgcaacataaaatttgatatttattttgccg
                     t"
                     /listShort="S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="promotor_-35"
     promotor_-10    26361..26380
                     /Source="Nicolas_upshift_promotors"
                     /id="U23"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.403596403596404"
                     /psig="0.899100899100899"
                     /xcortree=1436
                     /SigmaFactorBS="aacttgtctgaatagtacGGTTGCAatttttaggggaaACAG
                     ATATACTTAAGTGTGCatcgtaatagatgcaacataaaatttgatatttattttgccg
                     t"
                     /listShort="S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
                     /label="promotor_-10"
     misc_RNA        26379..26732
                     /gene="scr"
                     /locus_tag="BSU_misc_RNA_2"
                     /product="small cytoplasmic RNA (scRNA, 4.5S RNA), signal
                     recognition particle-like (SRP) component"
                     /experiment="publication(s) with functional evidences,
                     PMID:1372600, 1689715"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1372600, 1689715"
     gene            26379..26732
                     /gene="scr"
                     /locus_tag="BSU_misc_RNA_2"
     S_feature       26383..26532
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_26383_26532"
                     /HighExp="T1.0H, T5.0H, T1.30H, T3.30H, T3.0H, T2.30H,
                     T4.0H, S8, T-1.10H, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.899, 0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S17"
     upshifts        26383
                     /Source="Nicolas_upshifts"
                     /id="U23"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.403596403596404"
                     /psig="0.899100899100899"
                     /xcortree=1436
                     /SigmaFactorBS="aacttgtctgaatagtacGGTTGCAatttttaggggaaACAG
                     ATATACTTAAGTGTGCatcgtaatagatgcaacataaaatttgatatttattttgccg
                     t"
                     /listShort="S17, scr, S18"
                     /listLong="dnaX, yaaK, recR, yaaL, bofA, S19, rrnA-16S"
     S_feature       26636..26731
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_26636_26731"
                     /HighExp="S8, Sw, B60, B36, T2.30H, T3.30H, T1.0H, BC,
                     T4.0H, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.899, 0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S18"
     downshifts      26688
                     /Source="Nicolas_upshifts"
                     /id="D11"
                     /incds=0
                     /nref=273
                     /ntot=278
                     /MaxReadThrough="4.46774"
                     /MaxDrop="8.31255"
                     /score="23.257527"
                     /energy="-10.3"
                     /TU="U21,U23"
                     /idTUdmin="U21"
                     /TUdmin="-89"
                     /isTUend="FALSE"
     promotor_-35    26752..26755
                     /Source="Nicolas_upshift_promotors"
                     /id="U24"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig=1
                     /xcortree=2612
                     /SigmaFactorBS="attaggtgagttttttgttatgtaaaaagagctTTTGgaatc
                     gaaacaaggTTCATGTATAATGGGAATGAtgaataacggaggagggcaaacccgtgag
                     t"
                     /listShort="dnaX, yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="promotor_-35"
     promotor_-10    26770..26789
                     /Source="Nicolas_upshift_promotors"
                     /id="U24"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig=1
                     /xcortree=2612
                     /SigmaFactorBS="attaggtgagttttttgttatgtaaaaagagctTTTGgaatc
                     gaaacaaggTTCATGTATAATGGGAATGAtgaataacggaggagggcaaacccgtgag
                     t"
                     /listShort="dnaX, yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="promotor_-10"
     upshifts        26779
                     /Source="Nicolas_upshifts"
                     /id="U24"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig=1
                     /xcortree=2612
                     /SigmaFactorBS="attaggtgagttttttgttatgtaaaaagagctTTTGgaatc
                     gaaacaaggTTCATGTATAATGGGAATGAtgaataacggaggagggcaaacccgtgag
                     t"
                     /listShort="dnaX, yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
     CDS             26814..28505
                     /gene="dnaX"
                     /locus_tag="BSU_00190"
                     /old_locus_tag="BSU00190"
                     /EC_number="2.7.7.7"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:9341154, 10844689, 12466528, 12974630, 14757052,
                     15927750, 25850333, 26786318"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9341154, 10844689,
                     12466528, 12974630, 14757052, 15927750, 25850333,
                     26786318; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit tau subunit"
                     /protein_id="NP_387900.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00190"
                     /db_xref="EnsemblGenomes-Tr:CAB11795"
                     /db_xref="GOA:P09122"
                     /db_xref="InterPro:IPR001270"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR008921"
                     /db_xref="InterPro:IPR012763"
                     /db_xref="InterPro:IPR022754"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10083"
                     /db_xref="UniProtKB/Swiss-Prot:P09122"
                     /translation="MSYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFS
                     GPRGTGKTSAAKIFAKAVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVD
                     EIRDIRDKVKFAPSAVTYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPH
                     KIPLTIISRCQRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDAL
                     SLLDQAISFSGDILKVEDALLITGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGK
                     DPAKLIEDMIFYFRDMLLYKTAPGLEGVLEKVKVDETFRELSEQIPAQALYEMIDILN
                     KSHQEMKWTNHPRIFFEVAVVKICQTSHQSAADLPEVDMLMKKIQQLEQEVERLKTTG
                     IKAAAESPKKEAPRVPKGGKSNYKAPVGRIHEILKEATRPDLDLLRNSWGKLLAHLKQ
                     QNKVSHAALLNDSEPVAAGSAAFVLKFKYEIHCKMVAEDNNGVRTNLEQILESMLGKR
                     MDLIGVPEAQWGKIREEFLEDHQQENEGSNEPAEEDPLIAEAKKLVGADLIEIKD*"
     gene            26814..28505
                     /gene="dnaX"
                     /locus_tag="BSU_00190"
                     /old_locus_tag="BSU00190"
     promotor_-35    28346..28353
                     /Source="Nicolas_upshift_promotors"
                     /id="U25"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig="0.999000999001"
                     /xcortree=1923
                     /SigmaFactorBS="atgctcggaaaaagaatggatttGATTGGCGttccagaagca
                     caaTGGGGTAAAATAAGAGAAGAatttttagaagatcatcagcaggaaaatgaaggat
                     c"
                     /listShort="yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="promotor_-35"
     promotor_-10    28368..28387
                     /Source="Nicolas_upshift_promotors"
                     /id="U25"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig="0.999000999001"
                     /xcortree=1923
                     /SigmaFactorBS="atgctcggaaaaagaatggatttGATTGGCGttccagaagca
                     caaTGGGGTAAAATAAGAGAAGAatttttagaagatcatcagcaggaaaatgaaggat
                     c"
                     /listShort="yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
                     /label="promotor_-10"
     upshifts        28383
                     /Source="Nicolas_upshifts"
                     /id="U25"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig="0.999000999001"
                     /xcortree=1923
                     /SigmaFactorBS="atgctcggaaaaagaatggatttGATTGGCGttccagaagca
                     caaTGGGGTAAAATAAGAGAAGAatttttagaagatcatcagcaggaaaatgaaggat
                     c"
                     /listShort="yaaK, recR, yaaL, bofA"
                     /listLong="S19, rrnA-16S"
     CDS             28529..28852
                     /gene="ebfC"
                     /locus_tag="BSU_00200"
                     /old_locus_tag="BSU00200"
                     /function="16.9: Replicate"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16740939, 19208644,
                     19594923, 20639362, 22333191, 22544270; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid associated protein"
                     /protein_id="NP_387901.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00200"
                     /db_xref="EnsemblGenomes-Tr:CAB11796"
                     /db_xref="GOA:P24281"
                     /db_xref="InterPro:IPR004401"
                     /db_xref="InterPro:IPR036894"
                     /db_xref="SubtiList:BG10084"
                     /db_xref="UniProtKB/Swiss-Prot:P24281"
                     /translation="MRGGMGNMQKMMKQMQKMQKDMAKAQEELAEKVVEGTAGGGMVT
                     VKANGQKEILDVIIKEEVVDPEDIDMLQDLVLAATNEALKKVDEITNETMGQFTKGMN
                     MPGLF*"
     gene            28529..28852
                     /gene="ebfC"
                     /locus_tag="BSU_00200"
                     /old_locus_tag="BSU00200"
     CDS             28867..29463
                     /gene="recR"
                     /locus_tag="BSU_00210"
                     /old_locus_tag="BSU00210"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12065426, 24285298, 24891441"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12065426, 24285298,
                     24891441; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="recA filament-DNA complex stabilisation factor"
                     /protein_id="NP_387902.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00210"
                     /db_xref="EnsemblGenomes-Tr:CAB11797"
                     /db_xref="GOA:P24277"
                     /db_xref="InterPro:IPR000093"
                     /db_xref="InterPro:IPR006171"
                     /db_xref="InterPro:IPR015967"
                     /db_xref="InterPro:IPR023170"
                     /db_xref="InterPro:IPR023627"
                     /db_xref="InterPro:IPR023628"
                     /db_xref="InterPro:IPR034137"
                     /db_xref="SubtiList:BG10085"
                     /db_xref="UniProtKB/Swiss-Prot:P24277"
                     /translation="MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFA
                     KALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNG
                     QYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
                     KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL*"
     gene            28867..29463
                     /gene="recR"
                     /locus_tag="BSU_00210"
                     /old_locus_tag="BSU00210"
     CDS             29481..29705
                     /gene="yaaL"
                     /locus_tag="BSU_00220"
                     /old_locus_tag="BSU00220"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_387903.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00220"
                     /db_xref="EnsemblGenomes-Tr:CAB11798"
                     /db_xref="InterPro:IPR019644"
                     /db_xref="SubtiList:BG10086"
                     /db_xref="UniProtKB/Swiss-Prot:P37533"
                     /translation="MGFLRKKTLRREFDEKLTEQLFKQKEEWNRQKKLVEKSLEPSAE
                     VLYELKVAEAKYFFYLREAKQRNLKISRWK*"
     gene            29481..29705
                     /gene="yaaL"
                     /locus_tag="BSU_00220"
                     /old_locus_tag="BSU00220"
     promotor_-35    29708..29713
                     /Source="Nicolas_upshift_promotors"
                     /id="U26"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1161
                     /SigmaFactorBS="aagcgaagcagcgaaatttaaaaatcagccggtggaagtaag
                     tGGTCTAaactcctggatcttcTCATAAGCTTGTACTAGAAcaagcgaaggagatgag
                     a"
                     /listShort="bofA, S19"
                     /listLong="rrnA-16S"
                     /label="promotor_-35"
     upshifts        29725
                     /Source="Nicolas_upshifts"
                     /id="U26"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1161
                     /SigmaFactorBS="aagcgaagcagcgaaatttaaaaatcagccggtggaagtaag
                     tGGTCTAaactcctggatcttcTCATAAGCTTGTACTAGAAcaagcgaaggagatgag
                     a"
                     /listShort="bofA, S19"
                     /listLong="rrnA-16S"
     promotor_-10    29729..29747
                     /Source="Nicolas_upshift_promotors"
                     /id="U26"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1161
                     /SigmaFactorBS="aagcgaagcagcgaaatttaaaaatcagccggtggaagtaag
                     tGGTCTAaactcctggatcttcTCATAAGCTTGTACTAGAAcaagcgaaggagatgag
                     a"
                     /listShort="bofA, S19"
                     /listLong="rrnA-16S"
                     /label="promotor_-10"
     CDS             29772..30035
                     /gene="bofA"
                     /locus_tag="BSU_00230"
                     /old_locus_tag="BSU00230"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15087499, 17557826"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15087499, 17557826;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="inhibitor of the pro-sigma(K) processing
                     machinery"
                     /protein_id="NP_387904.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00230"
                     /db_xref="EnsemblGenomes-Tr:CAB11799"
                     /db_xref="GOA:P24282"
                     /db_xref="InterPro:IPR010001"
                     /db_xref="SubtiList:BG10087"
                     /db_xref="UniProtKB/Swiss-Prot:P24282"
                     /translation="MEPIFIIGIILGLVILLFLSGSAAKPLKWIGITAVKFVAGALLL
                     VCVNMFGGSLGIHVPINLVTTAISGILGIPGIAALVVIKQFII*"
     gene            29772..30035
                     /gene="bofA"
                     /locus_tag="BSU_00230"
                     /old_locus_tag="BSU00230"
     promotor_-35    30048..30055
                     /Source="Nicolas_upshift_promotors"
                     /id="U27"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2620
                     /SigmaFactorBS="ttaagcaatttatcatttaattgatattatgtATTGACTTag
                     acaactgaaggTGTTATTCTAATATACGTCGctgatgacgaacagcttttttgaaaag
                     a"
                     /listShort="S19, rrnA-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    30069..30088
                     /Source="Nicolas_upshift_promotors"
                     /id="U27"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2620
                     /SigmaFactorBS="ttaagcaatttatcatttaattgatattatgtATTGACTTag
                     acaactgaaggTGTTATTCTAATATACGTCGctgatgacgaacagcttttttgaaaag
                     a"
                     /listShort="S19, rrnA-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       30076..30278
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_30076_30278"
                     /HighExp="LBGstat, Diami, C30, H2O2, Oxctl, HPh, BMM, GM
                     120, Paraq, T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="1, 1"
                     /TUlongSig="SigA, SigA, SigA, SigA"
                     /TUlongPSig="0.999, 1, 0.899, 0.99"
                     /label="S19"
     upshifts        30076
                     /Source="Nicolas_upshifts"
                     /id="U27"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2620
                     /SigmaFactorBS="ttaagcaatttatcatttaattgatattatgtATTGACTTag
                     acaactgaaggTGTTATTCTAATATACGTCGctgatgacgaacagcttttttgaaaag
                     a"
                     /listShort="S19, rrnA-16S"
                     /GFF_Attribute="listLong"
     rRNA            30279..31832
                     /gene="rrnA-16S"
                     /locus_tag="BSU_rRNA_4"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            30279..31832
                     /gene="rrnA-16S"
                     /locus_tag="BSU_rRNA_4"
     tRNA            31932..32008
                     /gene="trnA-Ile"
                     /locus_tag="BSU_tRNA_8"
                     /product="tRNA-Ile"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ile(GAU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            31932..32008
                     /gene="trnA-Ile"
                     /locus_tag="BSU_tRNA_8"
     tRNA            32020..32095
                     /gene="trnA-Ala"
                     /locus_tag="BSU_tRNA_9"
                     /product="tRNA-Ala"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ala(UGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            32020..32095
                     /gene="trnA-Ala"
                     /locus_tag="BSU_tRNA_9"
     rRNA            32177..35103
                     /gene="rrnA-23S"
                     /locus_tag="BSU_rRNA_5"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            32177..35103
                     /gene="rrnA-23S"
                     /locus_tag="BSU_rRNA_5"
     S_feature       35104..35236
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_35104_35236"
                     /HighExp="LBGstat, G135, Oxctl, C30, HPh, Paraq, G180,
                     LPh, T0.30H, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S20"
     rRNA            35237..35355
                     /gene="rrnA-5S"
                     /locus_tag="BSU_rRNA_26"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            35237..35355
                     /gene="rrnA-5S"
                     /locus_tag="BSU_rRNA_26"
     S_feature       35356..35458
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_35356_35458"
                     /HighExp="Oxctl, Paraq, H2O2, LBGstat, C30, G180, Cold,
                     G135, Heat, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S21"
     promotor_-35    35419..35427
                     /Source="Nicolas_upshift_promotors"
                     /id="U28"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.715284715284715"
                     /psig="0.715284715284715"
                     /xcortree=1057
                     /SigmaFactorBS="cgagaaaatcaaacaaataCAAACACCGagggcttatatagC
                     CCATATACTGATTTAAAGTttcaaaaaggtctaaatagtgtatacaatatccgtttta
                     a"
                     /listShort="csfB, xpaC, yaaN, S22, yaaO, tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT"
                     /label="promotor_-35"
     promotor_-10    35441..35460
                     /Source="Nicolas_upshift_promotors"
                     /id="U28"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.715284715284715"
                     /psig="0.715284715284715"
                     /xcortree=1057
                     /SigmaFactorBS="cgagaaaatcaaacaaataCAAACACCGagggcttatatagC
                     CCATATACTGATTTAAAGTttcaaaaaggtctaaatagtgtatacaatatccgtttta
                     a"
                     /listShort="csfB, xpaC, yaaN, S22, yaaO, tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT"
                     /label="promotor_-10"
     upshifts        35460
                     /Source="Nicolas_upshifts"
                     /id="U28"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.715284715284715"
                     /psig="0.715284715284715"
                     /xcortree=1057
                     /SigmaFactorBS="cgagaaaatcaaacaaataCAAACACCGagggcttatatagC
                     CCATATACTGATTTAAAGTttcaaaaaggtctaaatagtgtatacaatatccgtttta
                     a"
                     /listShort="csfB, xpaC, yaaN, S22, yaaO, tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT"
     CDS             35531..35725
                     /gene="csfB"
                     /locus_tag="BSU_00240"
                     /old_locus_tag="BSU00240"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:8759874, 15044948, 21935351, 26929302"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8759874, 15044948,
                     21935351, 26929302; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="forespore-specific anti-sigma factor"
                     /protein_id="NP_387905.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00240"
                     /db_xref="EnsemblGenomes-Tr:CAB11800"
                     /db_xref="GOA:P37534"
                     /db_xref="InterPro:IPR019700"
                     /db_xref="SubtiList:BG10088"
                     /db_xref="UniProtKB/Swiss-Prot:P37534"
                     /translation="MDETVKLNHTCVICDQEKNRGIHLYTKFICLDCERKVISTSTSD
                     PDYAFYVKKLKSIHTPPLYS*"
     gene            35531..35725
                     /gene="csfB"
                     /locus_tag="BSU_00240"
                     /old_locus_tag="BSU00240"
     downshifts      35709
                     /Source="Nicolas_upshifts"
                     /id="D12"
                     /incds=0
                     /nref=79
                     /ntot=215
                     /MaxReadThrough="5.37774"
                     /MaxDrop="4.42494"
                     /score="22.3916007"
                     /energy="-6.7"
                     /TU="U28"
                     /idTUdmin="U27"
                     /TUdmin=3938
                     /isTUend="FALSE"
     promotor_-35    35770..35779
                     /Source="Nicolas_upshift_promotors"
                     /id="U29"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.984015984015984"
                     /psig="0.984015984015984"
                     /xcortree=1675
                     /SigmaFactorBS="tctttttttgtactcttaataataaaaagaagaTGAAACTTG
                     TttaaggattgaACGTAGTAGATAATAAtattaaaactgagtatagacacaggagtcg
                     a"
                     /listShort="xpaC, yaaN, S22, yaaO, tmk, yaaQ, yaaR, holB,
                     yaaT, yabA, yabB, yazA, yabC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    35791..35806
                     /Source="Nicolas_upshift_promotors"
                     /id="U29"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.984015984015984"
                     /psig="0.984015984015984"
                     /xcortree=1675
                     /SigmaFactorBS="tctttttttgtactcttaataataaaaagaagaTGAAACTTG
                     TttaaggattgaACGTAGTAGATAATAAtattaaaactgagtatagacacaggagtcg
                     a"
                     /listShort="xpaC, yaaN, S22, yaaO, tmk, yaaQ, yaaR, holB,
                     yaaT, yabA, yabB, yazA, yabC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        35797
                     /Source="Nicolas_upshifts"
                     /id="U29"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.984015984015984"
                     /psig="0.984015984015984"
                     /xcortree=1675
                     /SigmaFactorBS="tctttttttgtactcttaataataaaaagaagaTGAAACTTG
                     TttaaggattgaACGTAGTAGATAATAAtattaaaactgagtatagacacaggagtcg
                     a"
                     /listShort="xpaC, yaaN, S22, yaaO, tmk, yaaQ, yaaR, holB,
                     yaaT, yabA, yabB, yazA, yabC"
                     /GFF_Attribute="listLong"
     CDS             35845..36459
                     /gene="xpaC"
                     /locus_tag="BSU_00250"
                     /old_locus_tag="BSU00250"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23155385; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphatase"
                     /protein_id="NP_387906.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00250"
                     /db_xref="EnsemblGenomes-Tr:CAB11801"
                     /db_xref="GOA:P37467"
                     /db_xref="InterPro:IPR018770"
                     /db_xref="SubtiList:BG10089"
                     /db_xref="UniProtKB/Swiss-Prot:P37467"
                     /translation="MQRFFHFLVWSLTSSATFVFIGILSFFGLNQSIFLSIVYGLASG
                     AAVYIAGIWNARRLFLKKHELTGREYAYIKKNLEEARQKMVRLRKALFQAKSIQMFKQ
                     NAEMLRIVRRIYLLTKKEPKRFYQAERFFYQTLDSVVELTEKYAFLSSHPKKSKELSM
                     SLSETRITLTELTKRLEEDLTQAMGDEIDELQFELDAAKHSLKK*"
     gene            35845..36459
                     /gene="xpaC"
                     /locus_tag="BSU_00250"
                     /old_locus_tag="BSU00250"
     CDS             36478..37638
                     /gene="yaaN"
                     /locus_tag="BSU_00260"
                     /old_locus_tag="BSU00260"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12533473, 20713661"
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxic compound resistance protein"
                     /protein_id="NP_387907.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00260"
                     /db_xref="EnsemblGenomes-Tr:CAB11802"
                     /db_xref="InterPro:IPR008863"
                     /db_xref="SubtiList:BG10090"
                     /db_xref="UniProtKB/Swiss-Prot:P37535"
                     /translation="MNRDQSDLHIDELLADPFGGNIEIPGSEAVKAEKEQVRLVDVLP
                     EENKEKAIQLAGQIDHKNMQSIVLYGSQAQSKLLNFSHDMINHVQKKDVGEIGEILGE
                     LMKKLEQVNPDDLQSKKKGFLARMFGRVSSSLQEVLSKYQKTSVQIDRISLKLEHSKN
                     ALISDNKLLEQLYEKNKEYFAALNVYIAAGELKLEELKTKTIPELKQQAESSDHNQMA
                     VQEVNDLIQFADRLDKRVHDLLLSRQITIQSAPQIRLIQNTNQALAEKIQSSIVTAIP
                     LWKNQVAIALTLLRQRNAVDAQQKVSDTTNELLLKNAELLKTNTIETARANERGLVDI
                     DTLKKVQESLISTLEETLTIQEEGRIKRRQAEEELMMMEGDLKQKLITIKER*"
     gene            36478..37638
                     /gene="yaaN"
                     /locus_tag="BSU_00260"
                     /old_locus_tag="BSU00260"
     S_feature       37639..37719
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_37639_37719"
                     /HighExp="T0.0H, T-0.40H, T0.30H, T-1.10H, T-1.40H, Salt,
                     T1.0H, G150, Diami, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY, SigK"
                     /TUshortPSig="0.984, 0.715"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S22"
     CDS             37720..39162
                     /gene="yaaO"
                     /locus_tag="BSU_00270"
                     /old_locus_tag="BSU00270"
                     /EC_number="4.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9723923, 20876533,
                     24529384; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative decarboxylase"
                     /protein_id="NP_387908.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00270"
                     /db_xref="EnsemblGenomes-Tr:CAB11803"
                     /db_xref="GOA:P37536"
                     /db_xref="InterPro:IPR000310"
                     /db_xref="InterPro:IPR008286"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036633"
                     /db_xref="SubtiList:BG10091"
                     /db_xref="UniProtKB/Swiss-Prot:P37536"
                     /translation="MNTPLYKALIQHARRNSHSFHVPGHHNGDVFFDDAKSIFDPLLT
                     IDVTELAGLDDLHHPSGVIKEAQELASQLYGSAESFFLVNGTTVGNLAMILSVCEPGD
                     TILVQRNCHKSVFHAVDLSGAEPVYLAPDVDSAMHVPTHVPLGTIKEALEAYPDAKGL
                     VLTNPTYYGHSADLTEIITEAHHYGIPVLVDEAHGAHFILGEPFPVSALKMGADIVVQ
                     SAHKTLPAMTMGSYLHLNSSCRINRDRVAEYLNRLQSSSPSYPIMASLDIARAYVQHI
                     IEEQKLSDILQRIETLKQTFDSLTNAEAVNPANPLIITDPLKLTIRSKRGHSGYTLQS
                     ILERANIFTELADENQVLLVLPLGGKRRINAEIIRSIDEEIEKTPPDQTFVSAEWGVQ
                     PVTVLPYPKKVLHSFKKEYVSFEEAAGRLNAEDIIPYPPGIPMIMAGERITKESVQKL
                     SRLISMKTHVQGNMKIKEKQLLVYIEEEKS*"
     gene            37720..39162
                     /gene="yaaO"
                     /locus_tag="BSU_00270"
                     /old_locus_tag="BSU00270"
     promotor_-35    39082..39088
                     /Source="Nicolas_upshift_promotors"
                     /id="U30"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.513486513486514"
                     /psig="0.513486513486514"
                     /xcortree=105
                     /SigmaFactorBS="gaaagtgtgcaaaagctcagccgcttgatcAGCATGAaaacg
                     catgttcaaGGGAATATGAAAATCAAAGagaaacaactacttgtttatatagaagagg
                     a"
                     /listShort="tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA, yabC"
                     /label="promotor_-35"
     promotor_-10    39103..39121
                     /Source="Nicolas_upshift_promotors"
                     /id="U30"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.513486513486514"
                     /psig="0.513486513486514"
                     /xcortree=105
                     /SigmaFactorBS="gaaagtgtgcaaaagctcagccgcttgatcAGCATGAaaacg
                     catgttcaaGGGAATATGAAAATCAAAGagaaacaactacttgtttatatagaagagg
                     a"
                     /listShort="tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA, yabC"
                     /label="promotor_-10"
     upshifts        39112
                     /Source="Nicolas_upshifts"
                     /id="U30"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.513486513486514"
                     /psig="0.513486513486514"
                     /xcortree=105
                     /SigmaFactorBS="gaaagtgtgcaaaagctcagccgcttgatcAGCATGAaaacg
                     catgttcaaGGGAATATGAAAATCAAAGagaaacaactacttgtttatatagaagagg
                     a"
                     /listShort="tmk"
                     /listLong="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA, yabC"
     CDS             39159..39797
                     /gene="tmk"
                     /locus_tag="BSU_00280"
                     /old_locus_tag="BSU00280"
                     /EC_number="2.7.4.9"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9696781, 12682299, 18523102"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9696781, 12682299,
                     18523102; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate kinase"
                     /protein_id="NP_387909.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00280"
                     /db_xref="EnsemblGenomes-Tr:CAB11804"
                     /db_xref="GOA:P37537"
                     /db_xref="InterPro:IPR018094"
                     /db_xref="InterPro:IPR018095"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10092"
                     /db_xref="UniProtKB/Swiss-Prot:P37537"
                     /translation="MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGID
                     IAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSL
                     AYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLE
                     KLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL*"
     gene            39159..39797
                     /gene="tmk"
                     /locus_tag="BSU_00280"
                     /old_locus_tag="BSU00280"
     promotor_-35    39792..39799
                     /Source="Nicolas_upshift_promotors"
                     /id="U31"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig="0.964035964035964"
                     /xcortree=91
                     /SigmaFactorBS="tgatcgatgaagcgttgaaaaaaattcaaTTGTGACCtgttt
                     cccaataGTTGATATAATAATGTAAACgagatcacgttgtttccaatctaaaggaggc
                     c"
                     /listShort="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA,
                     yabC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    39812..39831
                     /Source="Nicolas_upshift_promotors"
                     /id="U31"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig="0.964035964035964"
                     /xcortree=91
                     /SigmaFactorBS="tgatcgatgaagcgttgaaaaaaattcaaTTGTGACCtgttt
                     cccaataGTTGATATAATAATGTAAACgagatcacgttgtttccaatctaaaggaggc
                     c"
                     /listShort="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA,
                     yabC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        39823
                     /Source="Nicolas_upshifts"
                     /id="U31"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig="0.964035964035964"
                     /xcortree=91
                     /SigmaFactorBS="tgatcgatgaagcgttgaaaaaaattcaaTTGTGACCtgttt
                     cccaataGTTGATATAATAATGTAAACgagatcacgttgtttccaatctaaaggaggc
                     c"
                     /listShort="yaaQ, yaaR, holB, yaaT, yabA, yabB, yazA,
                     yabC"
                     /GFF_Attribute="listLong"
     CDS             39871..40200
                     /gene="darA"
                     /locus_tag="BSU_00290"
                     /old_locus_tag="BSU00290"
                     /experiment="publication(s) with functional evidences,
                     PMID:10913081, 25433025"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10913081, 25433025;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction receptor, cyclic di-AMP
                     binding"
                     /protein_id="NP_387910.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00290"
                     /db_xref="EnsemblGenomes-Tr:CAB11805"
                     /db_xref="InterPro:IPR010375"
                     /db_xref="InterPro:IPR011322"
                     /db_xref="InterPro:IPR015867"
                     /db_xref="PDB:4RLE"
                     /db_xref="SubtiList:BG10093"
                     /db_xref="UniProtKB/Swiss-Prot:P37538"
                     /translation="MKLIVAVVQDQDSNRLLKTLTDHNFRVTKLATTGGFLKSGNTTF
                     MIGVEDIRVNKALSLIKENGQKRDQMIAPVSPMGGNADSYVPYPVEVEVGGATVFVLP
                     VDEFHQF*"
     gene            39871..40200
                     /gene="darA"
                     /locus_tag="BSU_00290"
                     /old_locus_tag="BSU00290"
     CDS             40213..40653
                     /gene="yaaR"
                     /locus_tag="BSU_00300"
                     /old_locus_tag="BSU00300"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22333191, 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_387911.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00300"
                     /db_xref="EnsemblGenomes-Tr:CAB11806"
                     /db_xref="InterPro:IPR005585"
                     /db_xref="InterPro:IPR024042"
                     /db_xref="SubtiList:BG10094"
                     /db_xref="UniProtKB/Swiss-Prot:P37539"
                     /translation="MKINKDIRTFIDNKQIPSVKTSEITASFKTSMENQSSKMKLDQL
                     TRLLSDIEAFGKRLTKSRNFKDLARFKGLVKRFVKEAVDSGLSHETSKSFDLYGNSRT
                     LGLVKEIDDKLIQLTEEMMDQEKPAIDLLERIGEIKGLLINLYT*"
     gene            40213..40653
                     /gene="yaaR"
                     /locus_tag="BSU_00300"
                     /old_locus_tag="BSU00300"
     CDS             40665..41654
                     /gene="holB"
                     /locus_tag="BSU_00310"
                     /old_locus_tag="BSU00310"
                     /EC_number="2.7.7.7"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8509334, 12060778, 12682299, 22333191, 23525462"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8509334, 12060778,
                     12682299, 22333191, 23525462; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III clamp loader delta' subunit"
                     /protein_id="NP_387912.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00310"
                     /db_xref="EnsemblGenomes-Tr:CAB11807"
                     /db_xref="GOA:P37540"
                     /db_xref="InterPro:IPR004622"
                     /db_xref="InterPro:IPR015199"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10095"
                     /db_xref="UniProtKB/Swiss-Prot:P37540"
                     /translation="MAISWKEMNELQPRVMKLLYNSIEKDRLSHAYLFEGKKGTGKLD
                     AALLLAKSFFCLEGGAEPCESCRNCKRIESGNHPDLHLVQPDGLSIKKAQIQALQEEF
                     SKTGLESHKKLYIISHADQMTANAANSLLKFLEEPNKDTMAVLITEQPQRLLDTIISR
                     CQTLPFQPLQPKAIEDRLIEQDVSPHMARLLANMTNNVAEAVELSRNDEFAESRAKVI
                     KLYEVLHQRKGHAFFFIQDQWMPFFKEKTHQEMGLDMLLLIYRDVLSIQIGNEDKLIY
                     QDLFQSIKQHALQSTQQSVTNQILAVLEAKKRLHSNVNVQGLMEHLVLMLQEG*"
     gene            40665..41654
                     /gene="holB"
                     /locus_tag="BSU_00310"
                     /old_locus_tag="BSU00310"
     CDS             41657..42484
                     /gene="ricT"
                     /locus_tag="BSU_00320"
                     /old_locus_tag="BSU00320"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12270811, 23490197, 26434553, 27501195, 28295778"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12270811, 23490197,
                     26434553, 27501195, 28295778; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="subunit of a sporulation, competence and
                     biofilmformation regulatory complex of RNaseY (RicAFT
                     complex /FAD / two [4Fe-4S]2+)"
                     /protein_id="NP_387913.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00320"
                     /db_xref="EnsemblGenomes-Tr:CAB11808"
                     /db_xref="GOA:P37541"
                     /db_xref="InterPro:IPR007557"
                     /db_xref="SubtiList:BG10096"
                     /db_xref="UniProtKB/Swiss-Prot:P37541"
                     /translation="MYNVIGVRFKKAGKIYYFDPNGFHIEHDSCVIVETVRGVEYGQV
                     VIANKQVDEHDVVLPLRKVIRVADDRDLLIVEENKQEALSAFDICQKKVIEHGLDMKL
                     VDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
                     CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQ
                     LPDIGEMITTANGPAKVVGLNILERVLQVELINREKVIEYTWEELLEEGVVSAQTTD*
                     "
     gene            41657..42484
                     /gene="ricT"
                     /locus_tag="BSU_00320"
                     /old_locus_tag="BSU00320"
     CDS             42499..42858
                     /gene="dnaH"
                     /locus_tag="BSU_00330"
                     /old_locus_tag="BSU00330"
                     /function="16.9: Replicate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15927750, 16461910, 19737352, 21895792, 23909787,
                     28166228"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15927750, 16461910,
                     19737352, 21895792, 23909787, 28166228; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="subunit of the DNA replication complex"
                     /protein_id="NP_387914.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00330"
                     /db_xref="EnsemblGenomes-Tr:CAB11809"
                     /db_xref="GOA:P37542"
                     /db_xref="InterPro:IPR010377"
                     /db_xref="PDB:5DOL"
                     /db_xref="SubtiList:BG10097"
                     /db_xref="UniProtKB/Swiss-Prot:P37542"
                     /translation="MDKKELFDTVINLEEQIGSLYRQLGDLKQHIGEMIEENHHLQLE
                     NKHLRKRLDDTTQQIEKFKADKKESKTQKTEQTDIGEGYDNLARLYQEGFHICNVHYG
                     SVRKEDCLFCLSFLNKK*"
     gene            42499..42858
                     /gene="dnaH"
                     /locus_tag="BSU_00330"
                     /old_locus_tag="BSU00330"
     CDS             42917..43660
                     /gene="trmNF"
                     /locus_tag="BSU_00340"
                     /old_locus_tag="BSU00340"
                     /EC_number="2.1.1.223"
                     /function="10.3: tRNA and rRNA base modification"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 22905870, 24809820; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="NP_387915.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00340"
                     /db_xref="EnsemblGenomes-Tr:CAB11810"
                     /db_xref="GOA:P37543"
                     /db_xref="InterPro:IPR007848"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG10098"
                     /db_xref="UniProtKB/Swiss-Prot:P37543"
                     /translation="MVSLHDDERLDYLLAEDMKIIQSPTVFAFSLDAVLLSKFAYVPI
                     QKGKIVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNKLDDQIQIIHD
                     DLKNMPEKLGHNRYDVVTCNPPYFKTPKQTEQNMNEHLRIARHEIHCTLEDVISVSSK
                     LLKQGGKAALVHRPGRLLEIFELMKAYQIEPKRVQFVYPKQGKEANTILVEGIKGGRP
                     DLKILPPLFVYDEQNEYTKEIRTILYGDK*"
     gene            42917..43660
                     /gene="trmNF"
                     /locus_tag="BSU_00340"
                     /old_locus_tag="BSU00340"
     CDS             43647..43946
                     /gene="yazA"
                     /locus_tag="BSU_00350"
                     /old_locus_tag="BSU00350"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11483577; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative UvrC-Intron-type (URI) endonuclease"
                     /protein_id="NP_387916.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00350"
                     /db_xref="EnsemblGenomes-Tr:CAB11811"
                     /db_xref="InterPro:IPR000305"
                     /db_xref="InterPro:IPR035901"
                     /db_xref="SubtiList:BG12700"
                     /db_xref="UniProtKB/Swiss-Prot:O31414"
                     /translation="METNNHFFYVVKCKDNSWYAGYTNDLHKRVKTHNDGKGAKYTKV
                     RRPVELIFAESFSTKREAMQAEYYFKKLTRKKKELYIEEKRNSKEAVYVKAPNEL*"
     gene            43647..43946
                     /gene="yazA"
                     /locus_tag="BSU_00350"
                     /old_locus_tag="BSU00350"
     CDS             43921..44799
                     /gene="rsmI"
                     /locus_tag="BSU_00360"
                     /old_locus_tag="BSU00360"
                     /EC_number="2.1.1.198"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16014871, 19965768,
                     25893373; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA 2'-O-ribose C1402 methyltransferase"
                     /protein_id="NP_387917.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00360"
                     /db_xref="EnsemblGenomes-Tr:CAB11812"
                     /db_xref="GOA:P37544"
                     /db_xref="InterPro:IPR000878"
                     /db_xref="InterPro:IPR008189"
                     /db_xref="InterPro:IPR014776"
                     /db_xref="InterPro:IPR014777"
                     /db_xref="InterPro:IPR018063"
                     /db_xref="InterPro:IPR035996"
                     /db_xref="SubtiList:BG10099"
                     /db_xref="UniProtKB/Swiss-Prot:P37544"
                     /translation="MLRRQMSFNGKSDMGILYLVPTPIGNLEDMTFRAIDTLKSVDAI
                     AAEDTRQTKKLCHVYEIETPLVSYHEHNKESSGHKIIEWLKSGKNIALVSDAGLPTIS
                     DPGAEIVKDFTDIGGYVVPLPGANAALTALIASGIVPQPFFFYGFLNRQKKEKKKELE
                     ALKKRQETIIFYEAPHRLKETLSAMAEILGDREIAVTRELTKKYEEFIRGTISEVIGW
                     ANEDQIRGEFCLVVEGSNNEEVDEEEQWWETLTAKEHVEHYISKGATSKEAIKKAAVD
                     RNVPKREVYDAYHIKQ*"
     gene            43921..44799
                     /gene="rsmI"
                     /locus_tag="BSU_00360"
                     /old_locus_tag="BSU00360"
     downshifts      44772
                     /Source="Nicolas_upshifts"
                     /id="D13"
                     /incds=0
                     /nref=23
                     /ntot=177
                     /MaxReadThrough="3.33195"
                     /MaxDrop="3.72723"
                     /score="5.97354542"
                     /energy="-10.2"
                     /TU="U29,U31"
                     /idTUdmin="U29"
                     /TUdmin="-23"
                     /isTUend="FALSE"
     CDS             complement(44848..45138)
                     /gene="abrB"
                     /locus_tag="BSU_00370"
                     /old_locus_tag="BSU00370"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10754235, 10809710, 11101881, 11101897, 16159768,
                     16223496, 16702211, 25308864, 25381239, 18676675,
                     22183144, 23196984, 24832089, 24847778, 25288929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10754235, 10809710,
                     11101881, 11101897, 16159768, 16223496, 16702211,
                     25308864, 25381239, 18676675, 22183144, 23196984,
                     24832089, 24847778, 25288929; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator for transition state
                     genes (AbrB-SurF)"
                     /protein_id="NP_387918.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00370"
                     /db_xref="EnsemblGenomes-Tr:CAB11813"
                     /db_xref="GOA:P08874"
                     /db_xref="InterPro:IPR007159"
                     /db_xref="PDB:1YFB"
                     /db_xref="PDB:1YSF"
                     /db_xref="PDB:1Z0R"
                     /db_xref="PDB:2K1N"
                     /db_xref="PDB:2MJG"
                     /db_xref="PDB:2RO4"
                     /db_xref="SubtiList:BG10100"
                     /db_xref="UniProtKB/Swiss-Prot:P08874"
                     /translation="MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEK
                     IILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK*"
     gene            complement(44848..45138)
                     /gene="abrB"
                     /locus_tag="BSU_00370"
                     /old_locus_tag="BSU00370"
     downshifts      complement(44850)
                     /Source="Nicolas_upshifts"
                     /id="D14"
                     /incds=0
                     /nref=216
                     /ntot=263
                     /MaxReadThrough="2.17237"
                     /MaxDrop="7.75729"
                     /score="20.9582436"
                     /energy="-10.2"
                     /TU="U32"
                     /idTUdmin="U32"
                     /TUdmin="-23"
                     /isTUend="FALSE"
     downshifts      45169
                     /Source="Nicolas_upshifts"
                     /id="D15"
                     /incds=0
                     /nref=1
                     /ntot=15
                     /MaxReadThrough="2.53543"
                     /MaxDrop="4.31699"
                     /score="13.7153159"
                     /energy="-14.4"
                     /TU="NA"
                     /idTUdmin="U29"
                     /TUdmin=374
                     /isTUend="FALSE"
     promotor_-10    complement(45205..45224)
                     /Source="Nicolas_upshift_promotors"
                     /id="U32"
                     /multdbtbs="SigA,SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2122
                     /SigmaFactorBS="tataagaactaattcttacaatcaatagtaaacaaaaTGATT
                     GACgattattggaaacCTTGTTATGCTATGAAGGTAaggattttgtcgaataatgacg
                     a"
                     /listShort="abrB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(45222)
                     /Source="Nicolas_upshifts"
                     /id="U32"
                     /multdbtbs="SigA,SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2122
                     /SigmaFactorBS="tataagaactaattcttacaatcaatagtaaacaaaaTGATT
                     GACgattattggaaacCTTGTTATGCTATGAAGGTAaggattttgtcgaataatgacg
                     a"
                     /listShort="abrB"
                     /GFF_Attribute="listLong"
     S_feature       complement(45224..45399)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_45224_45399_c"
                     /HighExp="C30, H2O2, G180, Etha, S0, GM 25, Gly, G135, MG
                     25, MG-0.2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S23"
     promotor_-35    complement(45238..45245)
                     /Source="Nicolas_upshift_promotors"
                     /id="U32"
                     /multdbtbs="SigA,SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2122
                     /SigmaFactorBS="tataagaactaattcttacaatcaatagtaaacaaaaTGATT
                     GACgattattggaaacCTTGTTATGCTATGAAGGTAaggattttgtcgaataatgacg
                     a"
                     /listShort="abrB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(45395..45414)
                     /Source="Nicolas_upshift_promotors"
                     /id="U33"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.993006993006993"
                     /xcortree=2123
                     /SigmaFactorBS="aaatctttaatgaaaataaaaaaaGTCTGTTCgtgtcgaatt
                     ttgTCGTATATAATCAAATGAAAtaaaaaactttggttcgaaagtcttgatttaaaag
                     g"
                     /listShort="S23"
                     /listLong="abrB"
                     /label="promotor_-10"
     upshifts        complement(45399)
                     /Source="Nicolas_upshifts"
                     /id="U33"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.993006993006993"
                     /xcortree=2123
                     /SigmaFactorBS="aaatctttaatgaaaataaaaaaaGTCTGTTCgtgtcgaatt
                     ttgTCGTATATAATCAAATGAAAtaaaaaactttggttcgaaagtcttgatttaaaag
                     g"
                     /listShort="S23"
                     /listLong="abrB"
     promotor_-35    complement(45428..45435)
                     /Source="Nicolas_upshift_promotors"
                     /id="U33"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.993006993006993"
                     /xcortree=2123
                     /SigmaFactorBS="aaatctttaatgaaaataaaaaaaGTCTGTTCgtgtcgaatt
                     ttgTCGTATATAATCAAATGAAAtaaaaaactttggttcgaaagtcttgatttaaaag
                     g"
                     /listShort="S23"
                     /listLong="abrB"
                     /label="promotor_-35"
     promotor_-35    45499..45503
                     /Source="Nicolas_upshift_promotors"
                     /id="U34"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig="0.999000999001"
                     /xcortree=2569
                     /SigmaFactorBS="ttttaattattctttttcagggcgtatgtatatatTCTTGat
                     cttaaaggctaaGATGGTATCATAGATAAAGGataaatataaataatattcatatatg
                     a"
                     /listShort="S24, metS, yabD, S26, yabE"
                     /listLong="S27, rnmV, ksgA"
                     /label="promotor_-35"
     promotor_-10    45518..45537
                     /Source="Nicolas_upshift_promotors"
                     /id="U34"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig="0.999000999001"
                     /xcortree=2569
                     /SigmaFactorBS="ttttaattattctttttcagggcgtatgtatatatTCTTGat
                     cttaaaggctaaGATGGTATCATAGATAAAGGataaatataaataatattcatatatg
                     a"
                     /listShort="S24, metS, yabD, S26, yabE"
                     /listLong="S27, rnmV, ksgA"
                     /label="promotor_-10"
     S_feature       45524..45632
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_45524_45632"
                     /HighExp="LBGtran, Heat, dia5, dia15, LBGexp, Lbexp, dia0,
                     H2O2, Diami, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S24"
     upshifts        45524
                     /Source="Nicolas_upshifts"
                     /id="U34"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig="0.999000999001"
                     /xcortree=2569
                     /SigmaFactorBS="ttttaattattctttttcagggcgtatgtatatatTCTTGat
                     cttaaaggctaaGATGGTATCATAGATAAAGGataaatataaataatattcatatatg
                     a"
                     /listShort="S24, metS, yabD, S26, yabE"
                     /listLong="S27, rnmV, ksgA"
     CDS             45633..47627
                     /gene="metS"
                     /locus_tag="BSU_00380"
                     /old_locus_tag="BSU00380"
                     /EC_number="6.1.1.10"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11233169, 12682299,
                     12792655; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA synthetase"
                     /protein_id="NP_387919.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00380"
                     /db_xref="EnsemblGenomes-Tr:CAB11814"
                     /db_xref="GOA:P37465"
                     /db_xref="InterPro:IPR001412"
                     /db_xref="InterPro:IPR002547"
                     /db_xref="InterPro:IPR004495"
                     /db_xref="InterPro:IPR009080"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR013155"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR014758"
                     /db_xref="InterPro:IPR015413"
                     /db_xref="InterPro:IPR023457"
                     /db_xref="InterPro:IPR033911"
                     /db_xref="SubtiList:BG10101"
                     /db_xref="UniProtKB/Swiss-Prot:P37465"
                     /translation="MPQENNTFYITTPIYYPSGKLHIGHAYTTVAGDAMARYKRLKGF
                     DVRYLTGTDEHGQKIQQKAEQENITPQEYVDRAAADIQKLWKQLEISNDDFIRTTEKR
                     HKVVIEKVFQKLLDNGDIYLDEYEGWYSIPDETFYTETQLVDIERNEKGEVIGGKSPD
                     SGHPVELIKEESYFFRMGKYADRLLKYYEENPTFIQPESRKNEMINNFIKPGLEDLAV
                     SRTTFDWGVKVPENPKHVVYVWIDALFNYLTALGYDTENDELYQKYWPADVHLVGKEI
                     VRFHTIYWPIMLMALDLPLPKQVFAHGWLLMKDGKMSKSKGNVVDPVTLIERYGLDEL
                     RYYLLREVPFGSDGVFTPEGFVERINYDLANDLGNLLNRTVAMINKYFDGQIGSYKGA
                     VTEFDHTLTSVAEETVKAYEKAMENMEFSVALSTLWQLISRTNKYIDETAPWVLAKDP
                     AKEEELRSVMYHLAESLRISAVLLQPFLTKTPEKMFEQLGITDESLKAWDSITAFGQL
                     KDTKVQKGEPLFPRLEAEEEIAYIKGKMQGSAPAKEETKEEEPQEVDRLPEITIDQFM
                     DVELRVAEVIEAEPVKKADRLLKLQLDLGFEKRQVVSGIAKHYTPEELVGKKLVCVTN
                     LKPVKLRGELSQGMILAGEADGVLKVVSIDQSLPKGTRIK*"
     gene            45633..47627
                     /gene="metS"
                     /locus_tag="BSU_00380"
                     /old_locus_tag="BSU00380"
     promotor_-10    complement(46381..46400)
                     /Source="Nicolas_upshift_promotors"
                     /id="U35"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1824
                     /SigmaFactorBS="cgactaaatgaacatcggcaggccaatatTTTTGataaagct
                     catcattTTCTGTATCATAACCGAGTGccgttaaatagttaaatagtgcgtcaatcca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(46389)
                     /Source="Nicolas_upshifts"
                     /id="U35"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1824
                     /SigmaFactorBS="cgactaaatgaacatcggcaggccaatatTTTTGataaagct
                     catcattTTCTGTATCATAACCGAGTGccgttaaatagttaaatagtgcgtcaatcca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(46416..46420)
                     /Source="Nicolas_upshift_promotors"
                     /id="U35"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1824
                     /SigmaFactorBS="cgactaaatgaacatcggcaggccaatatTTTTGataaagct
                     catcattTTCTGTATCATAACCGAGTGccgttaaatagttaaatagtgcgtcaatcca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      47611
                     /Source="Nicolas_upshifts"
                     /id="D16"
                     /incds=0
                     /nref=18
                     /ntot=206
                     /MaxReadThrough="4.8491"
                     /MaxDrop="2.9167"
                     /score="13.7153159"
                     /energy="-14.4"
                     /TU="U34"
                     /idTUdmin="U34"
                     /TUdmin="-2288"
                     /isTUend="FALSE"
     S_feature       complement(47673..50019)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_47673_50019_c"
                     /HighExp="T0.30H, T1.0H, T1.30H, Salt, C30, T2.0H,
                     T-0.40H, T0.0H, T2.30H, T-1.10H"
                     /AntisenseName="yabE"
                     /AntisenseCor="-0.28154713646185298"
                     /AntisenseRegPval="-5.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S25"
     CDS             47706..48473
                     /gene="dayD"
                     /locus_tag="BSU_00390"
                     /old_locus_tag="BSU00390"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10747959, 16014871,
                     16461678, 19332551; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acyl-tRNA deacylase"
                     /protein_id="NP_387920.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00390"
                     /db_xref="EnsemblGenomes-Tr:CAB11815"
                     /db_xref="GOA:P37545"
                     /db_xref="InterPro:IPR001130"
                     /db_xref="InterPro:IPR015991"
                     /db_xref="InterPro:IPR018228"
                     /db_xref="InterPro:IPR032466"
                     /db_xref="SubtiList:BG10102"
                     /db_xref="UniProtKB/Swiss-Prot:P37545"
                     /translation="MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTIT
                     RAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKS
                     PKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAE
                     VARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNE
                     PSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN*"
     gene            47706..48473
                     /gene="dayD"
                     /locus_tag="BSU_00390"
                     /old_locus_tag="BSU00390"
     S_feature       48474..48554
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_48474_48554"
                     /HighExp="Heat, C30, LBGtran, LBGstat, C90, Etha, M40t45,
                     LPhT, MG 15, Gly"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S26"
     promotor_-35    48531..48536
                     /Source="Nicolas_upshift_promotors"
                     /id="U36"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.943056943056943"
                     /psig="0.943056943056943"
                     /xcortree=438
                     /SigmaFactorBS="taagagcttgtcccttacagcgtttttctataaaaGTTCTAc
                     atgctttcttctccTCATAGGATAGGTTTGTCGacaagtctttcttccgtttctcagt
                     g"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    48552..48570
                     /Source="Nicolas_upshift_promotors"
                     /id="U36"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.943056943056943"
                     /psig="0.943056943056943"
                     /xcortree=438
                     /SigmaFactorBS="taagagcttgtcccttacagcgtttttctataaaaGTTCTAc
                     atgctttcttctccTCATAGGATAGGTTTGTCGacaagtctttcttccgtttctcagt
                     g"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        48556
                     /Source="Nicolas_upshifts"
                     /id="U36"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.943056943056943"
                     /psig="0.943056943056943"
                     /xcortree=438
                     /SigmaFactorBS="taagagcttgtcccttacagcgtttttctataaaaGTTCTAc
                     atgctttcttctccTCATAGGATAGGTTTGTCGacaagtctttcttccgtttctcagt
                     g"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
     promotor_-35    48581..48584
                     /Source="Nicolas_upshift_promotors"
                     /id="U37"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.705294705294705"
                     /psig="0.843156843156843"
                     /xcortree=440
                     /SigmaFactorBS="aggataggtttgtcgacaagtctttCTTCcgtttctcagtgt
                     aTTTCAGGATAATGAAGAGGAcactgagcttttgggagaaagagaagggagggttgac
                     a"
                     /listShort="yabE, S27"
                     /listLong="rnmV, ksgA"
                     /label="promotor_-35"
     promotor_-10    48599..48618
                     /Source="Nicolas_upshift_promotors"
                     /id="U37"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.705294705294705"
                     /psig="0.843156843156843"
                     /xcortree=440
                     /SigmaFactorBS="aggataggtttgtcgacaagtctttCTTCcgtttctcagtgt
                     aTTTCAGGATAATGAAGAGGAcactgagcttttgggagaaagagaagggagggttgac
                     a"
                     /listShort="yabE, S27"
                     /listLong="rnmV, ksgA"
                     /label="promotor_-10"
     upshifts        48616
                     /Source="Nicolas_upshifts"
                     /id="U37"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.705294705294705"
                     /psig="0.843156843156843"
                     /xcortree=440
                     /SigmaFactorBS="aggataggtttgtcgacaagtctttCTTCcgtttctcagtgt
                     aTTTCAGGATAATGAAGAGGAcactgagcttttgggagaaagagaagggagggttgac
                     a"
                     /listShort="yabE, S27"
                     /listLong="rnmV, ksgA"
     CDS             48629..49942
                     /gene="yabE"
                     /locus_tag="BSU_00400"
                     /old_locus_tag="BSU00400"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15774001, 19047346;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative cell wall shaping enzyme"
                     /protein_id="NP_387921.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00400"
                     /db_xref="EnsemblGenomes-Tr:CAB11816"
                     /db_xref="GOA:P37546"
                     /db_xref="InterPro:IPR007137"
                     /db_xref="InterPro:IPR010611"
                     /db_xref="InterPro:IPR011098"
                     /db_xref="InterPro:IPR036908"
                     /db_xref="SubtiList:BG10103"
                     /db_xref="UniProtKB/Swiss-Prot:P37546"
                     /translation="MGEREGRVDSLLDTLYNLSEEKEAFFITQKMKKLFSVKLSKSKV
                     ILVAACLLLAGSGTAYAAHELTKQSVSVSINGKKKHIRTHANTVGDLLETLDIKTRDE
                     DKITPAKQTKITADMDVVYEAAKPVKLTINGEEKTLWSTAKTVGALLDEQDVDVKEQD
                     QIDPAIDTDISKDMKINIEPAFQVTVNDAGKQKKIWTTSTTVADFLKQQKMNIKDEDK
                     IKPALDAKLTKGKADITITRIEKVTDVVEEKIAFDVKKQEDASLEKGKEKVVQKGKEG
                     KLKKHFEVVKENGKEVSRELVKEETAEQSKDKVIAVGTKQSSPKFETVSASGDSKTVV
                     SRSNESTGKVMTVSSTAYTASCSGCSGHTATGVNLKNNPNAKVIAVDPNVIPLGSKVH
                     VEGYGYAIAADTGSAIKGNKIDVFFPEKSSAYRWGNKTVKIKILN*"
     gene            48629..49942
                     /gene="yabE"
                     /locus_tag="BSU_00400"
                     /old_locus_tag="BSU00400"
     promotor_-35    48649..48656
                     /Source="Nicolas_upshift_promotors"
                     /id="U38"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2420
                     /SigmaFactorBS="taatgaagaggacactgagcttttgggagaaagagaagggag
                     GGTTGACAgccttttagatactCTATATAATCTCTCCGAGGAgaaggaggcgtttttc
                     a"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        48667
                     /Source="Nicolas_upshifts"
                     /id="U38"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2420
                     /SigmaFactorBS="taatgaagaggacactgagcttttgggagaaagagaagggag
                     GGTTGACAgccttttagatactCTATATAATCTCTCCGAGGAgaaggaggcgtttttc
                     a"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
     promotor_-10    48671..48690
                     /Source="Nicolas_upshift_promotors"
                     /id="U38"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2420
                     /SigmaFactorBS="taatgaagaggacactgagcttttgggagaaagagaagggag
                     GGTTGACAgccttttagatactCTATATAATCTCTCCGAGGAgaaggaggcgtttttc
                     a"
                     /listShort="yabE, S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      49903
                     /Source="Nicolas_upshifts"
                     /id="D17"
                     /incds=0
                     /nref=87
                     /ntot=220
                     /MaxReadThrough="5.02755"
                     /MaxDrop="4.87493"
                     /score="27.529638"
                     /energy="-11.3"
                     /TU="U36,U37,U38"
                     /idTUdmin="U34"
                     /TUdmin=4
                     /isTUend="TRUE"
     promotor_-35    49965..49969
                     /Source="Nicolas_upshift_promotors"
                     /id="U39"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.928071928071928"
                     /psig=1
                     /xcortree=2584
                     /SigmaFactorBS="taaaatcttaaattagtatatacttatgtattcagaggGTTT
                     TgcgccctctgtttttTTCGTTATAATAGACAAAGTgcattttctgcttattagacgc
                     t"
                     /listShort="S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    49985..50004
                     /Source="Nicolas_upshift_promotors"
                     /id="U39"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.928071928071928"
                     /psig=1
                     /xcortree=2584
                     /SigmaFactorBS="taaaatcttaaattagtatatacttatgtattcagaggGTTT
                     TgcgccctctgtttttTTCGTTATAATAGACAAAGTgcattttctgcttattagacgc
                     t"
                     /listShort="S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       49987..50086
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_49987_50086"
                     /HighExp="LoTm, H2O2, G180, G135, G150, Paraq, Oxctl, C30,
                     dia15, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA, SigEF"
                     /TUshortPSig="1, 1, 0.843, 0.943"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S27"
     upshifts        49987
                     /Source="Nicolas_upshifts"
                     /id="U39"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.928071928071928"
                     /psig=1
                     /xcortree=2584
                     /SigmaFactorBS="taaaatcttaaattagtatatacttatgtattcagaggGTTT
                     TgcgccctctgtttttTTCGTTATAATAGACAAAGTgcattttctgcttattagacgc
                     t"
                     /listShort="S27, rnmV, ksgA"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(50011..50026)
                     /Source="Nicolas_upshift_promotors"
                     /id="U40"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=2365
                     /SigmaFactorBS="ttatttcctccaagacaaaataaaaacttttgtatattcaTG
                     AAACTTTTtcttatatcgaGCGTCTAATAAGCAGAaaatgcactttgtctattataac
                     g"
                     /listShort="S25"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(50027)
                     /Source="Nicolas_upshifts"
                     /id="U40"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=2365
                     /SigmaFactorBS="ttatttcctccaagacaaaataaaaacttttgtatattcaTG
                     AAACTTTTtcttatatcgaGCGTCTAATAAGCAGAaaatgcactttgtctattataac
                     g"
                     /listShort="S25"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(50038..50047)
                     /Source="Nicolas_upshift_promotors"
                     /id="U40"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=2365
                     /SigmaFactorBS="ttatttcctccaagacaaaataaaaacttttgtatattcaTG
                     AAACTTTTtcttatatcgaGCGTCTAATAAGCAGAaaatgcactttgtctattataac
                     g"
                     /listShort="S25"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    50083..50099
                     /Source="Nicolas_upshift_promotors"
                     /id="U41"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="Sig-"
                     /pcomp="0.48051948051948"
                     /psig="0.48051948051948"
                     /xcortree=100
                     /SigmaFactorBS="aaaaagtttcatgaatatacaaaagtttttattttgtcttgg
                     aggaAATAATGAAAATTAAAGagatcattgtggtcgaggggcgtgacgatacggcccg
                     c"
                     /listShort="rnmV, ksgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             50087..50647
                     /gene="rnmV"
                     /locus_tag="BSU_00410"
                     /old_locus_tag="BSU00410"
                     /EC_number="3.1.26.8"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:11233981, 11976317, 12794188, 16077031"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11233981, 11976317,
                     12794188, 16077031; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="NP_387922.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00410"
                     /db_xref="EnsemblGenomes-Tr:CAB11817"
                     /db_xref="GOA:P37547"
                     /db_xref="InterPro:IPR004466"
                     /db_xref="InterPro:IPR006171"
                     /db_xref="InterPro:IPR025156"
                     /db_xref="InterPro:IPR034141"
                     /db_xref="SubtiList:BG10104"
                     /db_xref="UniProtKB/Swiss-Prot:P37547"
                     /translation="MKIKEIIVVEGRDDTARIKLAVDADTIETNGSAIDDHVIDQIRL
                     AQKTRGVIILTDPDFPGEKIRKTISEAVPGCKHAFLPKHLAKPKNKRGIGVEHASVES
                     IRACLENVHEEMEAQPSDISAEDLIHAGLIGGPAAKCRRERLGDLLKIGYTNGKQLQK
                     RLQMFQIKKSDFMSALDTVMREEQNE*"
     gene            50087..50647
                     /gene="rnmV"
                     /locus_tag="BSU_00410"
                     /old_locus_tag="BSU00410"
     upshifts        50097
                     /Source="Nicolas_upshifts"
                     /id="U41"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="Sig-"
                     /pcomp="0.48051948051948"
                     /psig="0.48051948051948"
                     /xcortree=100
                     /SigmaFactorBS="aaaaagtttcatgaatatacaaaagtttttattttgtcttgg
                     aggaAATAATGAAAATTAAAGagatcattgtggtcgaggggcgtgacgatacggcccg
                     c"
                     /listShort="rnmV, ksgA"
                     /GFF_Attribute="listLong"
     CDS             50640..51518
                     /gene="rsmA"
                     /locus_tag="BSU_00420"
                     /old_locus_tag="BSU00420"
                     /EC_number="2.1.1.-"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 99430, 6801425, 11327780,
                     1690648, 22391551; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyladenosine 16S ribosomal RNA transferase"
                     /protein_id="NP_387923.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00420"
                     /db_xref="EnsemblGenomes-Tr:CAB11818"
                     /db_xref="GOA:P37468"
                     /db_xref="InterPro:IPR001737"
                     /db_xref="InterPro:IPR011530"
                     /db_xref="InterPro:IPR020596"
                     /db_xref="InterPro:IPR020598"
                     /db_xref="InterPro:IPR023165"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG10105"
                     /db_xref="UniProtKB/Swiss-Prot:P37468"
                     /translation="MNKDIATPIRTKEILKKYGFSFKKSLGQNFLIDTNILNRIVDHA
                     EVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILKDTLSPYENVTVIHQD
                     VLKADVKSVIEEQFQDCDEIMVVANLPYYVTTPIIMKLLEEHLPLKGIVVMLQKEVAE
                     RMAADPSSKEYGSLSIAVQFYTEAKTVMIVPKTVFVPQPNVDSAVIRLILRDGPAVDV
                     ENESFFFQLIKASFAQRRKTLLNNLVNNLPEGKAQKSTIEQVLEETNIDGKRRGESLS
                     IEEFAALSNGLYKALF*"
     gene            50640..51518
                     /gene="rsmA"
                     /locus_tag="BSU_00420"
                     /old_locus_tag="BSU00420"
     downshifts      51483
                     /Source="Nicolas_upshifts"
                     /id="D18"
                     /incds=0
                     /nref=152
                     /ntot=229
                     /MaxReadThrough="3.0815"
                     /MaxDrop="4.58632"
                     /score="20.4155562"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U36"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    51533..51542
                     /Source="Nicolas_upshift_promotors"
                     /id="U42"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1303
                     /SigmaFactorBS="ttgtataaagcccttttctaaaagggctttttgttTTGCGCA
                     CCAcatggactgccgcTACATAGGCTAGAGAAGGACctttcattcaatgataagaaaa
                     a"
                     /listShort="S28, yabG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    51556..51575
                     /Source="Nicolas_upshift_promotors"
                     /id="U42"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1303
                     /SigmaFactorBS="ttgtataaagcccttttctaaaagggctttttgttTTGCGCA
                     CCAcatggactgccgcTACATAGGCTAGAGAAGGACctttcattcaatgataagaaaa
                     a"
                     /listShort="S28, yabG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       51558..51679
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_51558_51679"
                     /HighExp="S7, S6, S8, BT, S5, B36, G/S, Pyr, B60, Etha"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S28"
     upshifts        51558
                     /Source="Nicolas_upshifts"
                     /id="U42"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1303
                     /SigmaFactorBS="ttgtataaagcccttttctaaaagggctttttgttTTGCGCA
                     CCAcatggactgccgcTACATAGGCTAGAGAAGGACctttcattcaatgataagaaaa
                     a"
                     /listShort="S28, yabG"
                     /GFF_Attribute="listLong"
     CDS             51680..52552
                     /gene="prtG"
                     /locus_tag="BSU_00430"
                     /old_locus_tag="BSU00430"
                     /function="16.13: Shape"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10714992, 11040425, 16751597, 19060142, 19833771"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10714992, 11040425,
                     16751597, 19060142, 19833771; Product type cp: cell
                     process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific protease"
                     /protein_id="NP_387924.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00430"
                     /db_xref="EnsemblGenomes-Tr:CAB11819"
                     /db_xref="GOA:P37548"
                     /db_xref="InterPro:IPR008764"
                     /db_xref="SubtiList:BG10106"
                     /db_xref="UniProtKB/Swiss-Prot:P37548"
                     /translation="MQFQIGDMVARKSYQMDVLFRIIGIEQTSKGNSIAILHGDEVRL
                     IADSDFSDLVAVKKDEQMMRKKKDESRMNESLELLRQDYKLLREKQEYYATSQYQHQE
                     HYFHMPGKVLHLDGDEAYLKKCLNVYKKIGVPVYGIHCHEKKMSASIEVLLDKYRPDI
                     LVITGHDAYSKQKGGIDDLNAYRHSKHFVETVQTARKKIPHLDQLVIFAGACQSHFES
                     LIRAGANFASSPSRVNIHALDPVYIVAKISFTPFMERINVWEVLRNTLTREKGLGGIE
                     TRGVLRIGMPYKSN*"
     gene            51680..52552
                     /gene="prtG"
                     /locus_tag="BSU_00430"
                     /old_locus_tag="BSU00430"
     downshifts      52539
                     /Source="Nicolas_upshifts"
                     /id="D19"
                     /incds=0
                     /nref=15
                     /ntot=32
                     /MaxReadThrough="2.30424"
                     /MaxDrop="7.1507"
                     /score="26.6672651"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U42"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       52649..52719
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_52649_52719"
                     /HighExp="S8, S5, S7, S6, S4, BT, LoTm, G/S, nit, T5.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S29"
     promotor_-35    52710..52717
                     /Source="Nicolas_upshift_promotors"
                     /id="U43"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3089
                     /SigmaFactorBS="aaataattttattgacaacgtcttattaacgttgatataatt
                     taaatttTATTTGACaaaaatgggctcgTGTTGTACAATAAATGTAGTgaggtggatg
                     c"
                     /listShort="veg, S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        52721
                     /Source="Nicolas_upshifts"
                     /id="U43"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3089
                     /SigmaFactorBS="aaataattttattgacaacgtcttattaacgttgatataatt
                     taaatttTATTTGACaaaaatgggctcgTGTTGTACAATAAATGTAGTgaggtggatg
                     c"
                     /listShort="veg, S30, sspF"
                     /GFF_Attribute="listLong"
     promotor_-10    52731..52750
                     /Source="Nicolas_upshift_promotors"
                     /id="U43"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3089
                     /SigmaFactorBS="aaataattttattgacaacgtcttattaacgttgatataatt
                     taaatttTATTTGACaaaaatgggctcgTGTTGTACAATAAATGTAGTgaggtggatg
                     c"
                     /listShort="veg, S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(52740..52754)
                     /Source="Nicolas_upshift_promotors"
                     /id="U44"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.996003996003996"
                     /psig="0.000999000999001"
                     /xcortree=718
                     /SigmaFactorBS="attcccatcaagcgatcttttaatatcggacaacgtcttcGC
                     CATtgcatccaCCTCACTACATTTATtgtacaacacgagcccatttttgtcaaataaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(52747)
                     /Source="Nicolas_upshifts"
                     /id="U44"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.996003996003996"
                     /psig="0.000999000999001"
                     /xcortree=718
                     /SigmaFactorBS="attcccatcaagcgatcttttaatatcggacaacgtcttcGC
                     CATtgcatccaCCTCACTACATTTATtgtacaacacgagcccatttttgtcaaataaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(52763..52767)
                     /Source="Nicolas_upshift_promotors"
                     /id="U44"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.996003996003996"
                     /psig="0.000999000999001"
                     /xcortree=718
                     /SigmaFactorBS="attcccatcaagcgatcttttaatatcggacaacgtcttcGC
                     CATtgcatccaCCTCACTACATTTATtgtacaacacgagcccatttttgtcaaataaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             52763..53023
                     /gene="veg"
                     /locus_tag="BSU_00440"
                     /old_locus_tag="BSU00440"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12761295, 22720735, 23378512;
                     Producttype ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_387925.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00440"
                     /db_xref="EnsemblGenomes-Tr:CAB11820"
                     /db_xref="GOA:P37466"
                     /db_xref="InterPro:IPR009366"
                     /db_xref="SubtiList:BG10107"
                     /db_xref="UniProtKB/Swiss-Prot:P37466"
                     /translation="MAKTLSDIKRSLDGNLGKRLTLKANGGRRKTIERSGILAETYPS
                     VFVIQLDQDENSFERVSYSYADILTETVELTFNDDAASSVAF*"
     gene            52763..53023
                     /gene="veg"
                     /locus_tag="BSU_00440"
                     /old_locus_tag="BSU00440"
     downshifts      52935
                     /Source="Nicolas_upshifts"
                     /id="D20"
                     /incds=1
                     /nref=4
                     /ntot=158
                     /MaxReadThrough="8.09861"
                     /MaxDrop="2.7867"
                     /score="12.4853319"
                     /energy="-9.9"
                     /TU="U43"
                     /idTUdmin="U42"
                     /TUdmin=396
                     /isTUend="FALSE"
     downshifts      53022
                     /Source="Nicolas_upshifts"
                     /id="D21"
                     /incds=0
                     /nref=191
                     /ntot=264
                     /MaxReadThrough="5.88511"
                     /MaxDrop="6.03144"
                     /score="12.4853319"
                     /energy="-9.9"
                     /TU="U43"
                     /idTUdmin="U43"
                     /TUdmin="-331"
                     /isTUend="FALSE"
     promotor_-35    53088..53094
                     /Source="Nicolas_upshift_promotors"
                     /id="U45"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=844
                     /SigmaFactorBS="ttttgttttgcccttttttggtttccaataattttaaCGAAA
                     GTtccatctgatttaACAAAAGATAAAacagtcacatattatcgtgacgtgcacgaat
                     g"
                     /listShort="S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    53108..53119
                     /Source="Nicolas_upshift_promotors"
                     /id="U45"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=844
                     /SigmaFactorBS="ttttgttttgcccttttttggtttccaataattttaaCGAAA
                     GTtccatctgatttaACAAAAGATAAAacagtcacatattatcgtgacgtgcacgaat
                     g"
                     /listShort="S30, sspF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       53111..53182
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_53111_53182"
                     /HighExp="S8, Cold, S6, S7, ferm, S5, nit, Etha, G135,
                     LoTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigA"
                     /TUshortPSig="0.96, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S30"
     upshifts        53111
                     /Source="Nicolas_upshifts"
                     /id="U45"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=844
                     /SigmaFactorBS="ttttgttttgcccttttttggtttccaataattttaaCGAAA
                     GTtccatctgatttaACAAAAGATAAAacagtcacatattatcgtgacgtgcacgaat
                     g"
                     /listShort="S30, sspF"
                     /GFF_Attribute="listLong"
     CDS             53183..53368
                     /gene="sspF"
                     /locus_tag="BSU_00450"
                     /old_locus_tag="BSU00450"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7959056, 8982008, 11092849"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7959056, 8982008,
                     11092849; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein
                     (alpha/beta-type SASP)"
                     /protein_id="NP_387926.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00450"
                     /db_xref="EnsemblGenomes-Tr:CAB11821"
                     /db_xref="GOA:P37549"
                     /db_xref="InterPro:IPR001448"
                     /db_xref="InterPro:IPR018126"
                     /db_xref="SubtiList:BG10108"
                     /db_xref="UniProtKB/Swiss-Prot:P37549"
                     /translation="MGRRRGVMSDEFKYELAKDLGFYDTVKNGGWGEIRARDAGNMVK
                     RAIEIAEQQMAQNQNNR*"
     gene            53183..53368
                     /gene="sspF"
                     /locus_tag="BSU_00450"
                     /old_locus_tag="BSU00450"
     downshifts      53353
                     /Source="Nicolas_upshifts"
                     /id="D22"
                     /incds=0
                     /nref=54
                     /ntot=153
                     /MaxReadThrough="2.67408"
                     /MaxDrop="6.21058"
                     /score="38.1065567"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U43"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(53363..55717)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_53363_55717_c"
                     /HighExp="S5, S4, S6, T5.0H, S3, S8, S7, T4.0H, T3.30H,
                     C30"
                     /AntisenseName="ispE"
                     /AntisenseCor="-0.66604185700913698"
                     /AntisenseRegPval="-35.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S31"
     promotor_-35    53446..53450
                     /Source="Nicolas_upshift_promotors"
                     /id="U46"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.745254745254745"
                     /psig=1
                     /xcortree=2586
                     /SigmaFactorBS="ttttggatataaatacataatgggctgaatatggataTGTTC
                     atcctgtacttcaaaTGTGATACAATGTTCATACTtatgtttagatggagaagtaggt
                     g"
                     /listShort="ispE, purR, yabJ, S32"
                     /listLong="spoVG"
                     /label="promotor_-35"
     promotor_-10    53466..53485
                     /Source="Nicolas_upshift_promotors"
                     /id="U46"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.745254745254745"
                     /psig=1
                     /xcortree=2586
                     /SigmaFactorBS="ttttggatataaatacataatgggctgaatatggataTGTTC
                     atcctgtacttcaaaTGTGATACAATGTTCATACTtatgtttagatggagaagtaggt
                     g"
                     /listShort="ispE, purR, yabJ, S32"
                     /listLong="spoVG"
                     /label="promotor_-10"
     upshifts        53469
                     /Source="Nicolas_upshifts"
                     /id="U46"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.745254745254745"
                     /psig=1
                     /xcortree=2586
                     /SigmaFactorBS="ttttggatataaatacataatgggctgaatatggataTGTTC
                     atcctgtacttcaaaTGTGATACAATGTTCATACTtatgtttagatggagaagtaggt
                     g"
                     /listShort="ispE, purR, yabJ, S32"
                     /listLong="spoVG"
     CDS             53516..54385
                     /gene="ispE"
                     /locus_tag="BSU_00460"
                     /old_locus_tag="BSU00460"
                     /EC_number="2.7.1.148"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11361082, 12682299,
                     12771135, 17458547, 23840410; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="NP_387927.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00460"
                     /db_xref="EnsemblGenomes-Tr:CAB11822"
                     /db_xref="GOA:P37550"
                     /db_xref="InterPro:IPR004424"
                     /db_xref="InterPro:IPR006204"
                     /db_xref="InterPro:IPR013750"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR036554"
                     /db_xref="SubtiList:BG10109"
                     /db_xref="UniProtKB/Swiss-Prot:P37550"
                     /translation="MRILEKAPAKINLSLDVTRKRPDGYHEVEMIMTTIDLADRIELT
                     ELAEDEVRVSSHNRFVPDDQRNLAYQAAKLIKDRYNVKKGVSIMITKVIPVAAGLAGG
                     SSDAAATLRGLNRLWNLNLSAETLAELGAEIGSDVSFCVYGGTALATGRGEKIKHIST
                     PPHCWVILAKPTIGVSTAEVYRALKLDGIEHPDVQGMIEAIEEKSFQKMCSRLGNVLE
                     SVTLDMHPEVAMIKNQMKRFGADAVLMSGSGPTVFGLVQYESKVQRIYNGLRGFCDQV
                     YAVRMIGEQNALD*"
     gene            53516..54385
                     /gene="ispE"
                     /locus_tag="BSU_00460"
                     /old_locus_tag="BSU00460"
     CDS             54441..55298
                     /gene="purR"
                     /locus_tag="BSU_00470"
                     /old_locus_tag="BSU00470"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11591660, 12837783, 12837784, 15629952, 16163456,
                     27329548"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11591660, 12837783,
                     12837784, 15629952, 16163456, 27329548; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of the purine
                     biosynthesis operon (PurR-pRpp)"
                     /protein_id="NP_387928.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00470"
                     /db_xref="EnsemblGenomes-Tr:CAB11823"
                     /db_xref="GOA:P37551"
                     /db_xref="InterPro:IPR000836"
                     /db_xref="InterPro:IPR010078"
                     /db_xref="InterPro:IPR015265"
                     /db_xref="InterPro:IPR029057"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:1O57"
                     /db_xref="PDB:1P4A"
                     /db_xref="SubtiList:BG10110"
                     /db_xref="UniProtKB/Swiss-Prot:P37551"
                     /translation="MKFRRSGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDL
                     TIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLGQSLANPERILPGGY
                     VYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVR
                     KDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINL
                     LDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTLSTINMKEKSIEIQNGNFLRFFKDN
                     LLKNGETES*"
     gene            54441..55298
                     /gene="purR"
                     /locus_tag="BSU_00470"
                     /old_locus_tag="BSU00470"
     CDS             55295..55672
                     /gene="ridA"
                     /locus_tag="BSU_00480"
                     /old_locus_tag="BSU00480"
                     /EC_number="3.5.99.10"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2113912, 12515541, 14729707,
                     10557275, 10919400, 10368157, 20562306, 23815688; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacrylate/iminopropionate
                     hydrolase/deaminase"
                     /protein_id="NP_387929.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00480"
                     /db_xref="EnsemblGenomes-Tr:CAB11824"
                     /db_xref="GOA:P37552"
                     /db_xref="InterPro:IPR006056"
                     /db_xref="InterPro:IPR006175"
                     /db_xref="InterPro:IPR019897"
                     /db_xref="InterPro:IPR035959"
                     /db_xref="PDB:1QD9"
                     /db_xref="SubtiList:BG10111"
                     /db_xref="UniProtKB/Swiss-Prot:P37552"
                     /translation="MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNG
                     DIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPAR
                     SCVEVARLPKDALVEIEVIALVK*"
     gene            55295..55672
                     /gene="ridA"
                     /locus_tag="BSU_00480"
                     /old_locus_tag="BSU00480"
     downshifts      55662
                     /Source="Nicolas_upshifts"
                     /id="D23"
                     /incds=0
                     /nref=172
                     /ntot=226
                     /MaxReadThrough="3.8891"
                     /MaxDrop="4.63425"
                     /score="22.9159767"
                     /energy="-12.3"
                     /TU="U46"
                     /idTUdmin="U46"
                     /TUdmin="-155"
                     /isTUend="FALSE"
     promotor_-10    complement(55706..55724)
                     /Source="Nicolas_upshift_promotors"
                     /id="U47"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1146
                     /SigmaFactorBS="ttttgaaaaaataggatatagttacacaattagGTCATAaag
                     ctttcatttcggGCATAAGGTAAATAAAAAAgtgatcccggctctcccagaatcactt
                     t"
                     /listShort="S31"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       55707..55815
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_55707_55815"
                     /HighExp="S8, S7, Etha, B36, LoTm, C30, Sw, B60, G135,
                     G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S32"
     upshifts        complement(55718)
                     /Source="Nicolas_upshifts"
                     /id="U47"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1146
                     /SigmaFactorBS="ttttgaaaaaataggatatagttacacaattagGTCATAaag
                     ctttcatttcggGCATAAGGTAAATAAAAAAgtgatcccggctctcccagaatcactt
                     t"
                     /listShort="S31"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(55740..55745)
                     /Source="Nicolas_upshift_promotors"
                     /id="U47"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1146
                     /SigmaFactorBS="ttttgaaaaaataggatatagttacacaattagGTCATAaag
                     ctttcatttcggGCATAAGGTAAATAAAAAAgtgatcccggctctcccagaatcactt
                     t"
                     /listShort="S31"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    55795..55803
                     /Source="Nicolas_upshift_promotors"
                     /id="U48"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=524
                     /SigmaFactorBS="actatatcctattttttcaaaaaatattttaaaaacgaGCAG
                     GATTTcagaaaaaatCGTGGAATTGATACACTAAtgcttttatatagggaaaaggtgg
                     t"
                     /listShort="spoVG, S33, gcaD, prs"
                     /listLong="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /label="promotor_-35"
     promotor_-10    55814..55832
                     /Source="Nicolas_upshift_promotors"
                     /id="U48"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=524
                     /SigmaFactorBS="actatatcctattttttcaaaaaatattttaaaaacgaGCAG
                     GATTTcagaaaaaatCGTGGAATTGATACACTAAtgcttttatatagggaaaaggtgg
                     t"
                     /listShort="spoVG, S33, gcaD, prs"
                     /listLong="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /label="promotor_-10"
     upshifts        55817
                     /Source="Nicolas_upshifts"
                     /id="U48"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=524
                     /SigmaFactorBS="actatatcctattttttcaaaaaatattttaaaaacgaGCAG
                     GATTTcagaaaaaatCGTGGAATTGATACACTAAtgcttttatatagggaaaaggtgg
                     t"
                     /listShort="spoVG, S33, gcaD, prs"
                     /listLong="ctc, pth, yabK, S34, mfd, S35, spoVT"
     CDS             55866..56159
                     /gene="spoVG"
                     /locus_tag="BSU_00490"
                     /old_locus_tag="BSU00490"
                     /function="16.3: Control"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:9733708, 10348850, 10648512, 16428420, 27048798"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9733708, 10348850,
                     10648512, 16428420, 27048798; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator required for spore cortex synthesis
                     (stage V sporulation)"
                     /protein_id="NP_387930.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00490"
                     /db_xref="EnsemblGenomes-Tr:CAB11825"
                     /db_xref="GOA:P28015"
                     /db_xref="InterPro:IPR007170"
                     /db_xref="InterPro:IPR036751"
                     /db_xref="PDB:2IA9"
                     /db_xref="SubtiList:BG10112"
                     /db_xref="UniProtKB/Swiss-Prot:P28015"
                     /translation="MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLF
                     VAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEEAGAS*"
     gene            55866..56159
                     /gene="spoVG"
                     /locus_tag="BSU_00490"
                     /old_locus_tag="BSU00490"
     downshifts      56148
                     /Source="Nicolas_upshifts"
                     /id="D24"
                     /incds=0
                     /nref=263
                     /ntot=285
                     /MaxReadThrough="5.11673"
                     /MaxDrop="7.2673"
                     /score="19.392304"
                     /energy="-22.3"
                     /TU="U48"
                     /idTUdmin="U46"
                     /TUdmin=331
                     /isTUend="FALSE"
     S_feature       56193..56304
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_56193_56304"
                     /HighExp="B60, B36, M9-stat, S2, BT, LoTm, Etha, Lbstat,
                     T0.30H, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S33"
     promotor_-35    56286..56290
                     /Source="Nicolas_upshift_promotors"
                     /id="U49"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.996003996003996"
                     /xcortree=2611
                     /SigmaFactorBS="agttgcactcaatagaaaattcttgcacttcatgaagtctCC
                     TTGaaatcagaagatattTAGGATATATTTTTCTATGGataaaagggatattggaggc
                     c"
                     /listShort="gcaD, prs, ctc, pth, yabK, S34, mfd, S35,
                     spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    56306..56325
                     /Source="Nicolas_upshift_promotors"
                     /id="U49"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.996003996003996"
                     /xcortree=2611
                     /SigmaFactorBS="agttgcactcaatagaaaattcttgcacttcatgaagtctCC
                     TTGaaatcagaagatattTAGGATATATTTTTCTATGGataaaagggatattggaggc
                     c"
                     /listShort="gcaD, prs, ctc, pth, yabK, S34, mfd, S35,
                     spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        56306
                     /Source="Nicolas_upshifts"
                     /id="U49"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.996003996003996"
                     /xcortree=2611
                     /SigmaFactorBS="agttgcactcaatagaaaattcttgcacttcatgaagtctCC
                     TTGaaatcagaagatattTAGGATATATTTTTCTATGGataaaagggatattggaggc
                     c"
                     /listShort="gcaD, prs, ctc, pth, yabK, S34, mfd, S35,
                     spoVT"
                     /GFF_Attribute="listLong"
     CDS             56352..57722
                     /gene="glmU"
                     /locus_tag="BSU_00500"
                     /old_locus_tag="BSU00500"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1328164, 8522540, 9648743, 11124906, 20495944,
                     23485416, 24915076"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1328164, 8522540,
                     9648743, 11124906, 20495944, 23485416, 24915076; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glucosamine-1-phosphate
                     N-acetyltransferase/UDP-N-acetylglucosamine
                     pyrophosphorylase"
                     /protein_id="NP_387931.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00500"
                     /db_xref="EnsemblGenomes-Tr:CAB11826"
                     /db_xref="GOA:P14192"
                     /db_xref="InterPro:IPR001451"
                     /db_xref="InterPro:IPR005835"
                     /db_xref="InterPro:IPR005882"
                     /db_xref="InterPro:IPR011004"
                     /db_xref="InterPro:IPR018357"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG10113"
                     /db_xref="UniProtKB/Swiss-Prot:P14192"
                     /translation="MDKRFAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDEALKL
                     SLSKLVTIVGHGAEEVKKQLGDKSEYALQAKQLGTAHAVKQAQPFLADEKGVTIVICG
                     DTPLLTAETMEQMLKEHTQREAKATILTAVAEDPTGYGRIIRSENGAVQKIVEHKDAS
                     EEERLVTEINTGTYCFDNEALFRAIDQVSNDNAQGEYYLPDVIEILKNEGETVAAYQT
                     GNFQETLGVNDRVALSQAEQFMKERINKRHMQNGVTLIDPMNTYISPDAVIGSDTVIY
                     PGTVIKGEVQIGEDTIIGPHTEIMNSAIGSRTVIKQSVVNHSKVGNDVNIGPFAHIRP
                     DSVIGNEVKIGNFVEIKKTQFGDRSKASHLSYVGDAEVGTDVNLGCGSITVNYDGKNK
                     YLTKIEDGAFIGCNSNLVAPVTVGEGAYVAAGSTVTEDVPGKALAIARARQVNKDDYV
                     KNIHKK*"
     gene            56352..57722
                     /gene="glmU"
                     /locus_tag="BSU_00500"
                     /old_locus_tag="BSU00500"
     downshifts      complement(57697)
                     /Source="Nicolas_upshifts"
                     /id="D25"
                     /incds=0
                     /nref=5
                     /ntot=84
                     /MaxReadThrough="2.39379"
                     /MaxDrop="3.65636"
                     /score="-7.65702938"
                     /energy="-13.8"
                     /TU="NA"
                     /idTUdmin="U47"
                     /TUdmin="-4312"
                     /isTUend="FALSE"
     CDS             57745..58698
                     /gene="prs"
                     /locus_tag="BSU_00510"
                     /old_locus_tag="BSU00510"
                     /EC_number="2.7.6.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2169413, 3038693, 8522540, 22083279, 25890046"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2169413, 3038693,
                     8522540, 22083279, 25890046; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylpyrophosphate synthetase"
                     /protein_id="NP_387932.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00510"
                     /db_xref="EnsemblGenomes-Tr:CAB11827"
                     /db_xref="GOA:P14193"
                     /db_xref="InterPro:IPR000836"
                     /db_xref="InterPro:IPR000842"
                     /db_xref="InterPro:IPR005946"
                     /db_xref="InterPro:IPR029057"
                     /db_xref="InterPro:IPR029099"
                     /db_xref="PDB:1DKR"
                     /db_xref="PDB:1DKU"
                     /db_xref="PDB:1IBS"
                     /db_xref="SubtiList:BG10114"
                     /db_xref="UniProtKB/Swiss-Prot:P14193"
                     /translation="MSNQYGDKNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDG
                     EVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYAR
                     QDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEY
                     FEGKNLEDIVIVSPDHGGVTRARKLADRLKAPIAIIDKRRPRPNVAEVMNIVGNIEGK
                     TAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTIKELVVT
                     NSIKLPEEKKIERFKQLSVGPLLAEAIIRVHEQQSVSYLFS*"
     gene            57745..58698
                     /gene="prs"
                     /locus_tag="BSU_00510"
                     /old_locus_tag="BSU00510"
     promotor_-35    58711..58717
                     /Source="Nicolas_upshift_promotors"
                     /id="U50"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=265
                     /SigmaFactorBS="agcaatcagtcagctatctgttcagctaaaccatttttcgaG
                     GTTTAAatccttatcgttatGGGTATTGTTTGTAATAGGacaactaaaacgacaagag
                     g"
                     /listShort="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        58730
                     /Source="Nicolas_upshifts"
                     /id="U50"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=265
                     /SigmaFactorBS="agcaatcagtcagctatctgttcagctaaaccatttttcgaG
                     GTTTAAatccttatcgttatGGGTATTGTTTGTAATAGGacaactaaaacgacaagag
                     g"
                     /listShort="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
     promotor_-10    58732..58750
                     /Source="Nicolas_upshift_promotors"
                     /id="U50"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=265
                     /SigmaFactorBS="agcaatcagtcagctatctgttcagctaaaccatttttcgaG
                     GTTTAAatccttatcgttatGGGTATTGTTTGTAATAGGacaactaaaacgacaagag
                     g"
                     /listShort="ctc, pth, yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             58783..59397
                     /gene="ctc"
                     /locus_tag="BSU_00520"
                     /old_locus_tag="BSU00520"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8522540, 9669336, 10369900, 12432960, 17198710"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8522540, 9669336,
                     10369900, 12432960, 17198710; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein BL25 (Ctc), binding 5S RNA"
                     /protein_id="NP_387933.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00520"
                     /db_xref="EnsemblGenomes-Tr:CAB11828"
                     /db_xref="GOA:P14194"
                     /db_xref="InterPro:IPR001021"
                     /db_xref="InterPro:IPR011035"
                     /db_xref="InterPro:IPR020056"
                     /db_xref="InterPro:IPR020057"
                     /db_xref="InterPro:IPR029751"
                     /db_xref="InterPro:IPR037121"
                     /db_xref="SubtiList:BG10115"
                     /db_xref="UniProtKB/Swiss-Prot:P14194"
                     /translation="MATLTAKERTDFTRSSLRNIRTSGHVPGIIYGKDTGNKPVSLDS
                     VELIKTLRDEGKNAVITLEVSGEKHSVMVTDLQTDPLKNEITHADFQVVNMSEDIEVE
                     VPIHLTGEAIGVKNGGVLQQPLYALTVKAKPKAIPQTIEADISSLDVNEVLTIADLPA
                     GGDYSFNHESDEVVASILPPQQQEAAEVDEEESADAQPEGENEQ*"
     gene            58783..59397
                     /gene="ctc"
                     /locus_tag="BSU_00520"
                     /old_locus_tag="BSU00520"
     downshifts      59381
                     /Source="Nicolas_upshifts"
                     /id="D26"
                     /incds=0
                     /nref=120
                     /ntot=249
                     /MaxReadThrough="8.65206"
                     /MaxDrop="5.4784"
                     /score="1.94770319"
                     /energy="-11.2"
                     /TU="U49,U50"
                     /idTUdmin="U48"
                     /TUdmin=682
                     /isTUend="FALSE"
     CDS             59504..60070
                     /gene="pth"
                     /locus_tag="BSU_00530"
                     /old_locus_tag="BSU00530"
                     /EC_number="3.1.1.29"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:8635758, 12100553, 12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8635758, 12100553,
                     12682299; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-tRNA hydrolase"
                     /protein_id="NP_387934.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00530"
                     /db_xref="EnsemblGenomes-Tr:CAB11829"
                     /db_xref="GOA:P37470"
                     /db_xref="InterPro:IPR001328"
                     /db_xref="InterPro:IPR018171"
                     /db_xref="InterPro:IPR036416"
                     /db_xref="SubtiList:BG10116"
                     /db_xref="UniProtKB/Swiss-Prot:P37470"
                     /translation="MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNG
                     LYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRL
                     RTKGSAGGHNGIKSLIQHLGTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEE
                     AVDKSVKACEASLSKPFLEVMNEFNAKV*"
     gene            59504..60070
                     /gene="pth"
                     /locus_tag="BSU_00530"
                     /old_locus_tag="BSU00530"
     misc_feature    59683..59686
                     /Source="Nicolas_upshift_promotors"
                     /id="U51"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="Sig-"
                     /pcomp="0.210789210789211"
                     /psig="0.210789210789211"
                     /xcortree=737
                     /SigmaFactorBS="taacggattatacggaaccggatttgtttccggcaaaaaggt
                     tctacttgttaaACCGcttacatatatgaatttatcaggagaatgtttgcggccttta
                     a"
                     /listShort="yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        59689
                     /Source="Nicolas_upshifts"
                     /id="U51"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="Sig-"
                     /pcomp="0.210789210789211"
                     /psig="0.210789210789211"
                     /xcortree=737
                     /SigmaFactorBS="taacggattatacggaaccggatttgtttccggcaaaaaggt
                     tctacttgttaaACCGcttacatatatgaatttatcaggagaatgtttgcggccttta
                     a"
                     /listShort="yabK, S34, mfd, S35, spoVT"
                     /GFF_Attribute="listLong"
     CDS             60130..60360
                     /gene="fin"
                     /locus_tag="BSU_00540"
                     /old_locus_tag="BSU00540"
                     /experiment="publication(s) with functional evidences,
                     PMID:21037003, 28598017"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21037003, 28598017;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="protein required for the switch from F to G
                     during sporulation (anti sigma F)"
                     /protein_id="NP_387935.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00540"
                     /db_xref="EnsemblGenomes-Tr:CAB11830"
                     /db_xref="GOA:P37553"
                     /db_xref="InterPro:IPR020115"
                     /db_xref="PDB:5MSL"
                     /db_xref="SubtiList:BG10117"
                     /db_xref="UniProtKB/Swiss-Prot:P37553"
                     /translation="MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYK
                     ENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ*"
     gene            60130..60360
                     /gene="fin"
                     /locus_tag="BSU_00540"
                     /old_locus_tag="BSU00540"
     S_feature       60361..60429
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_60361_60429"
                     /HighExp="Etha, S5, S4, S7, S8, S6, S3, H2O2, Diami, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigB, SigA"
                     /TUshortPSig="0.211, 1, 0.996"
                     /TUlongSig="SigH"
                     /TUlongPSig=1
                     /label="S34"
     CDS             60430..63963
                     /gene="mfd"
                     /locus_tag="BSU_00550"
                     /old_locus_tag="BSU00550"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8594198, 9535092, 11065368, 16950921, 22248542,
                     25713353, 27399782, 27435260"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8594198, 9535092,
                     11065368, 16950921, 22248542, 25713353, 27399782,
                     27435260; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="NP_387936.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00550"
                     /db_xref="EnsemblGenomes-Tr:CAB11831"
                     /db_xref="GOA:P37474"
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR003711"
                     /db_xref="InterPro:IPR004576"
                     /db_xref="InterPro:IPR005118"
                     /db_xref="InterPro:IPR011545"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036101"
                     /db_xref="SubtiList:BG10118"
                     /db_xref="UniProtKB/Swiss-Prot:P37474"
                     /translation="MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSA
                     LANETNKPIFLITHNLYQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQ
                     RLDVINRLTNGEAPIVVAPVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEV
                     GYERSDMVSAPGEFSIRGGIIDIYPLTSENPVRIELFDTEVDSIRSFNSDDQRSIETL
                     TSINIGPAKELIIRPEEKARAMEKIDSGLAASLKKLKADKQKEILHANISHDKERLSE
                     GQTDQELVKYLSYFYEKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLL
                     EEGKILHDIRLSFSFQKIVAEQKRPLLYYSLFLRHVHHTSPQNIVNVSGRQMQSFHGQ
                     MNVLAGEMERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAMTDSKKALVQGQVYI
                     MEGELQSGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAERIKSYSELQIGDYVVH
                     INHGIGKYLGIETLEINGIHKDYLNIHYQGSDKLYVPVEQIDQVQKYVGSEGKEPKLY
                     KLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQREFESAFPYQE
                     TEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTT
                     ILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKD
                     VVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSV
                     IETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEISMLV
                     PDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKM
                     GLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD
                     LTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFETEIDVELDAY
                     IPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVY
                     ARQERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKKLKISIQ
                     TKGRSADEWLDTVLGMLKGLKDVKKQTISST*"
     gene            60430..63963
                     /gene="mfd"
                     /locus_tag="BSU_00550"
                     /old_locus_tag="BSU00550"
     promotor_-35    63981..63987
                     /Source="Nicolas_upshift_promotors"
                     /id="U52"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=914
                     /SigmaFactorBS="agcaaaccatttcatcaacgtaaattttgttactctctggTG
                     TATATtacatttgatgtgACGGATACTAATttcaagcgaggcggaaggtacataaagt
                     a"
                     /listShort="S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       64001..64098
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_64001_64098"
                     /HighExp="S5, S7, S8, S6, S4, Etha, S3, H2O2, G135, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, Sig-, SigB, SigA"
                     /TUshortPSig="1, 0.211, 1, 0.996"
                     /TUlongSig="SigH"
                     /TUlongPSig=1
                     /label="S35"
     promotor_-10    64001..64012
                     /Source="Nicolas_upshift_promotors"
                     /id="U52"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=914
                     /SigmaFactorBS="agcaaaccatttcatcaacgtaaattttgttactctctggTG
                     TATATtacatttgatgtgACGGATACTAATttcaagcgaggcggaaggtacataaagt
                     a"
                     /listShort="S35, spoVT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        64001
                     /Source="Nicolas_upshifts"
                     /id="U52"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=914
                     /SigmaFactorBS="agcaaaccatttcatcaacgtaaattttgttactctctggTG
                     TATATtacatttgatgtgACGGATACTAATttcaagcgaggcggaaggtacataaagt
                     a"
                     /listShort="S35, spoVT"
                     /GFF_Attribute="listLong"
     CDS             64099..64635
                     /gene="spoVT"
                     /locus_tag="BSU_00560"
                     /old_locus_tag="BSU00560"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8755877, 15063493, 15939023, 16159768, 18996130,
                     22522895, 27790204"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8755877, 15063493,
                     15939023, 16159768, 18996130, 22522895, 27790204; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of sporulation /
                     germination"
                     /protein_id="NP_387937.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00560"
                     /db_xref="EnsemblGenomes-Tr:CAB11832"
                     /db_xref="GOA:P37554"
                     /db_xref="InterPro:IPR007159"
                     /db_xref="InterPro:IPR014213"
                     /db_xref="PDB:2RO5"
                     /db_xref="PDB:2W1R"
                     /db_xref="PDB:2W1T"
                     /db_xref="SubtiList:BG10119"
                     /db_xref="UniProtKB/Swiss-Prot:P37554"
                     /translation="MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEV
                     ILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEML
                     ERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQTMGEV
                     EHKAVETAAGFLARQMEQ*"
     gene            64099..64635
                     /gene="spoVT"
                     /locus_tag="BSU_00560"
                     /old_locus_tag="BSU00560"
     downshifts      64639
                     /Source="Nicolas_upshifts"
                     /id="D27"
                     /incds=0
                     /nref=236
                     /ntot=260
                     /MaxReadThrough="1.92082"
                     /MaxDrop="6.20706"
                     /score="-2.69593259"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U49"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_feature    64735..64754
                     /Source="Nicolas_upshift_promotors"
                     /id="U53"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig=1
                     /xcortree=1839
                     /SigmaFactorBS="gacgctgttctttttcatgcgtgccgaaaaaggaatccaagg
                     gttgggaTGTGGTATAATAACCTCGTTtttatttgtgccgcggtaatacgtgaaccgt
                     a"
                     /listShort="yabM, yabN, yabO, yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        64746
                     /Source="Nicolas_upshifts"
                     /id="U53"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig=1
                     /xcortree=1839
                     /SigmaFactorBS="gacgctgttctttttcatgcgtgccgaaaaaggaatccaagg
                     gttgggaTGTGGTATAATAACCTCGTTtttatttgtgccgcggtaatacgtgaaccgt
                     a"
                     /listShort="yabM, yabN, yabO, yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
     CDS             64817..66415
                     /gene="yabM"
                     /locus_tag="BSU_00570"
                     /old_locus_tag="BSU00570"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exporter"
                     /protein_id="NP_387938.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00570"
                     /db_xref="EnsemblGenomes-Tr:CAB11833"
                     /db_xref="GOA:P37555"
                     /db_xref="InterPro:IPR002797"
                     /db_xref="InterPro:IPR024923"
                     /db_xref="InterPro:IPR029303"
                     /db_xref="SubtiList:BG10120"
                     /db_xref="UniProtKB/Swiss-Prot:P37555"
                     /translation="MDDSIGVKRHWIWQGAFVLILAGVITKILSAVYRVPFQNIVGDV
                     GFYIYQQVYPFLGIAVMLSTSGFPVIISKLMNDYSEKNHHTILKISALFLSLIGILLF
                     LCLYLGAVPIALFMGDSHLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMT
                     EQFLRVAVLLGLSFWLVKKGASLYTAGAAAASGSLAGSLVALIILGFFWFKTKRDNQT
                     DRQNENVITTKELTKKLLLYSVTICVSSLLLLFIQLVDALNLYALLSGGEASEEAKCL
                     KGIYDRGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVLGTG
                     ASAGLICILKPVNIMLFQNGEGTGALQVFSCSILFASLAVTAAAVLQGAGYTVFPAIA
                     VGAGVAVKWVLNTLLVPRYGIEGASLATAASFAAVAGLNLYQLRQKEWLDKLRGVLIP
                     IIGSALLMSAVLLAYTRLWTFLFPATGRGAAVIESLSAVAIGGAVFIYCMMRLGIFTD
                     EELNSVPFGSKLSKFMRRREQNGG*"
     gene            64817..66415
                     /gene="yabM"
                     /locus_tag="BSU_00570"
                     /old_locus_tag="BSU00570"
     promotor_-35    66286..66293
                     /Source="Nicolas_upshift_promotors"
                     /id="U54"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.798201798201798"
                     /xcortree=108
                     /SigmaFactorBS="gattgagagtctttctgctgttgcCATTGGTGgcgcggtgtt
                     tattTATTGTATGATGAGATTGGGaatatttacagatgaagagctgaacagtgtgcca
                     t"
                     /listShort="yabN, yabO, yabP, yabQ"
                     /listLong="divIC, yabR"
                     /label="promotor_-35"
     promotor_-10    66308..66327
                     /Source="Nicolas_upshift_promotors"
                     /id="U54"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.798201798201798"
                     /xcortree=108
                     /SigmaFactorBS="gattgagagtctttctgctgttgcCATTGGTGgcgcggtgtt
                     tattTATTGTATGATGAGATTGGGaatatttacagatgaagagctgaacagtgtgcca
                     t"
                     /listShort="yabN, yabO, yabP, yabQ"
                     /listLong="divIC, yabR"
                     /label="promotor_-10"
     upshifts        66322
                     /Source="Nicolas_upshifts"
                     /id="U54"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.798201798201798"
                     /xcortree=108
                     /SigmaFactorBS="gattgagagtctttctgctgttgcCATTGGTGgcgcggtgtt
                     tattTATTGTATGATGAGATTGGGaatatttacagatgaagagctgaacagtgtgcca
                     t"
                     /listShort="yabN, yabO, yabP, yabQ"
                     /listLong="divIC, yabR"
     CDS             66405..67874
                     /gene="yabN"
                     /locus_tag="BSU_00580"
                     /old_locus_tag="BSU00580"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11178267; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative fusion methylase and nucleotide
                     pyrophosphohydrolase"
                     /protein_id="NP_387939.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00580"
                     /db_xref="EnsemblGenomes-Tr:CAB11834"
                     /db_xref="GOA:P37556"
                     /db_xref="InterPro:IPR000878"
                     /db_xref="InterPro:IPR004518"
                     /db_xref="InterPro:IPR011551"
                     /db_xref="InterPro:IPR014777"
                     /db_xref="InterPro:IPR024180"
                     /db_xref="InterPro:IPR035013"
                     /db_xref="InterPro:IPR035996"
                     /db_xref="SubtiList:BG10121"
                     /db_xref="UniProtKB/Swiss-Prot:P37556"
                     /translation="MAGKITVVGLGAGDMDQLTIGIHKLLTKADTLYVRTKDHPLIEE
                     LEKETKNIRFFDDIYEKHDQFEAVYEEIADILFEAARREDVVYAVPGHPFVAEKTVQL
                     LTERQEKENVQVKVAGGQSFLDATFNVLQIDPIEGFQFVDAGTLSADELELRHHLIIC
                     QVYDQMTASEVKLTLMEKLPDDYEVVIVTAAGSRGEEIRTVPLFELDRNVALNNLTSV
                     YIPPIKEEKLLYHEFSTFRSIIRELRGPNGCPWDKKQTHQSLKQYMIEECYELLEAID
                     EEDTDHMIEELGDVLLQVLLHAQIGEDEGYFTIDDVIKGISEKMVRRHPHVFKDVKVQ
                     DENDVLANWEDIKKAEKNTSESSLLDSVPKTLPALSKAAKLQKKAAKVGFDWEDVSDI
                     WEKVSEEMKEFSSEVSEAPHEHNLKAEFGDILFALVNVARFYKIEPEEALTMTNDKFR
                     RRFSYIEETAKEEGVELADMSLEDMDKLWNEAKETERRS*"
     gene            66405..67874
                     /gene="yabN"
                     /locus_tag="BSU_00580"
                     /old_locus_tag="BSU00580"
     promotor_-35    67046..67053
                     /Source="Nicolas_upshift_promotors"
                     /id="U55"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2822
                     /SigmaFactorBS="tggaccgcaatgtcgctttgaacaaCTTAACAAgtgtgtata
                     ttccGCCGATTAAAGAAGAGAAGctgctttatcacgaattctccacgttccgaagcat
                     c"
                     /listShort="yabO, yabP, yabQ, divIC, yabR"
                     /listLong="trnSL-Met1"
                     /label="promotor_-35"
     promotor_-10    67067..67085
                     /Source="Nicolas_upshift_promotors"
                     /id="U55"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2822
                     /SigmaFactorBS="tggaccgcaatgtcgctttgaacaaCTTAACAAgtgtgtata
                     ttccGCCGATTAAAGAAGAGAAGctgctttatcacgaattctccacgttccgaagcat
                     c"
                     /listShort="yabO, yabP, yabQ, divIC, yabR"
                     /listLong="trnSL-Met1"
                     /label="promotor_-10"
     upshifts        67081
                     /Source="Nicolas_upshifts"
                     /id="U55"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2822
                     /SigmaFactorBS="tggaccgcaatgtcgctttgaacaaCTTAACAAgtgtgtata
                     ttccGCCGATTAAAGAAGAGAAGctgctttatcacgaattctccacgttccgaagcat
                     c"
                     /listShort="yabO, yabP, yabQ, divIC, yabR"
                     /listLong="trnSL-Met1"
     promotor_no_box complement(67469..67569)
                     /Source="Nicolas_upshift_promotors"
                     /id="U56"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.984015984015984"
                     /psig="0.001998001998002"
                     /xcortree=37
                     /SigmaFactorBS="cgtcttcccagtcaaaaccgaccttcgctgcttttttctgca
                     atttagctgctttcgaaagagctggaagggttttcggtacgctgtctagtaatgatga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(67509)
                     /Source="Nicolas_upshifts"
                     /id="U56"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.984015984015984"
                     /psig="0.001998001998002"
                     /xcortree=37
                     /SigmaFactorBS="cgtcttcccagtcaaaaccgaccttcgctgcttttttctgca
                     atttagctgctttcgaaagagctggaagggttttcggtacgctgtctagtaatgatga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             67877..68137
                     /gene="hslR"
                     /locus_tag="BSU_00590"
                     /old_locus_tag="BSU00590"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10675343, 10675344,
                     19013177; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal RNA binding protein involved in 50S
                     recycling; heat shock protein"
                     /protein_id="NP_387940.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00590"
                     /db_xref="EnsemblGenomes-Tr:CAB11835"
                     /db_xref="GOA:P37557"
                     /db_xref="InterPro:IPR002942"
                     /db_xref="InterPro:IPR025490"
                     /db_xref="InterPro:IPR036986"
                     /db_xref="SubtiList:BG10122"
                     /db_xref="UniProtKB/Swiss-Prot:P37557"
                     /translation="MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPG
                     DELTVRFGQKLVTVQVNELKDTTKKEEAANMYTILKEEKLGE*"
     gene            67877..68137
                     /gene="hslR"
                     /locus_tag="BSU_00590"
                     /old_locus_tag="BSU00590"
     promotor_-35    68142..68147
                     /Source="Nicolas_upshift_promotors"
                     /id="U57"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=1397
                     /SigmaFactorBS="aaaaactcggcgaataggcttGTTCTAaaaaaaccccccacc
                     TCATACAATGCAGTAATAAtgctaaaagtatcgaggatatgggggctgaatagatgaa
                     t"
                     /listShort="yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    68163..68181
                     /Source="Nicolas_upshift_promotors"
                     /id="U57"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=1397
                     /SigmaFactorBS="aaaaactcggcgaataggcttGTTCTAaaaaaaccccccacc
                     TCATACAATGCAGTAATAAtgctaaaagtatcgaggatatgggggctgaatagatgaa
                     t"
                     /listShort="yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        68181
                     /Source="Nicolas_upshifts"
                     /id="U57"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=1397
                     /SigmaFactorBS="aaaaactcggcgaataggcttGTTCTAaaaaaaccccccacc
                     TCATACAATGCAGTAATAAtgctaaaagtatcgaggatatgggggctgaatagatgaa
                     t"
                     /listShort="yabP, yabQ, divIC, yabR"
                     /GFF_Attribute="listLong"
     downshifts      complement(68213)
                     /Source="Nicolas_upshifts"
                     /id="D28"
                     /incds=0
                     /nref=3
                     /ntot=19
                     /MaxReadThrough="1.93659"
                     /MaxDrop="3.17193"
                     /score="-0.425236437"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U62"
                     /TUdmin=3014
                     /isTUend="FALSE"
     CDS             68216..68518
                     /gene="spcP"
                     /locus_tag="BSU_00600"
                     /old_locus_tag="BSU00600"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10869437, 11283287, 15231775, 21904870, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10869437, 11283287,
                     15231775, 21904870, 22720735; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="spore protein involved in the shaping of the
                     spore coat"
                     /protein_id="NP_387941.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00600"
                     /db_xref="EnsemblGenomes-Tr:CAB11836"
                     /db_xref="GOA:P37558"
                     /db_xref="InterPro:IPR012504"
                     /db_xref="InterPro:IPR022476"
                     /db_xref="SubtiList:BG10123"
                     /db_xref="UniProtKB/Swiss-Prot:P37558"
                     /translation="MNSYYDQKGSSSVPEQHDVTMKGRKHLDISGVKHVESFDNEEFL
                     LETVMGMLSVRGQNLQMKNLDVEKGIVSIKGRVFDLVYLDEQQGDKAKGFFSKLFK*"
     gene            68216..68518
                     /gene="spcP"
                     /locus_tag="BSU_00600"
                     /old_locus_tag="BSU00600"
     CDS             68515..69150
                     /gene="spcQ"
                     /locus_tag="BSU_00610"
                     /old_locus_tag="BSU00610"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10869437, 11283287, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10869437, 11283287,
                     15849754, 16850406; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein of the forespore"
                     /protein_id="NP_387942.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00610"
                     /db_xref="EnsemblGenomes-Tr:CAB11837"
                     /db_xref="GOA:P37559"
                     /db_xref="InterPro:IPR014242"
                     /db_xref="InterPro:IPR019074"
                     /db_xref="SubtiList:BG10124"
                     /db_xref="UniProtKB/Swiss-Prot:P37559"
                     /translation="MTLTTQFYTMLAMSGMGLWLGASLDTYRLFVIRAKTARWLLFIH
                     DILFWIMQGLLFFYVLLHVNEGEFRIYIFLAVLLGVATYQSLCKRIYIKILKFVIYLV
                     VSVYQFFKKLIQHVLFRPIVWTCGAIIWLAAFLFKKTYSLIGFLLLCLYKIVMVLCFP
                     IRFIAKQCLKLLPVKMRLTFRRYFEKGAGFLKKKKKLLITIRTTITRFLKR*"
     gene            68515..69150
                     /gene="spcQ"
                     /locus_tag="BSU_00610"
                     /old_locus_tag="BSU00610"
     promotor_-35    69020..69029
                     /Source="Nicolas_upshift_promotors"
                     /id="U58"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1706
                     /SigmaFactorBS="tgtgttttccgatccgttttatcgcgaaacaatgttTGAAAC
                     TTCTtcctgtgaaaatGCGTCTAACTTTTAGAcgttattttgaaaaaggtgcaggatt
                     t"
                     /listShort="divIC, yabR, trnSL-Met1, trnSL-Glu1, S36"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    69042..69057
                     /Source="Nicolas_upshift_promotors"
                     /id="U58"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1706
                     /SigmaFactorBS="tgtgttttccgatccgttttatcgcgaaacaatgttTGAAAC
                     TTCTtcctgtgaaaatGCGTCTAACTTTTAGAcgttattttgaaaaaggtgcaggatt
                     t"
                     /listShort="divIC, yabR, trnSL-Met1, trnSL-Glu1, S36"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        69044
                     /Source="Nicolas_upshifts"
                     /id="U58"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1706
                     /SigmaFactorBS="tgtgttttccgatccgttttatcgcgaaacaatgttTGAAAC
                     TTCTtcctgtgaaaatGCGTCTAACTTTTAGAcgttattttgaaaaaggtgcaggatt
                     t"
                     /listShort="divIC, yabR, trnSL-Met1, trnSL-Glu1, S36"
                     /GFF_Attribute="listLong"
     promotor_-35    69076..69084
                     /Source="Nicolas_upshift_promotors"
                     /id="U59"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=532
                     /SigmaFactorBS="tctaacttttagacgttattttgaaaaaggtGCAGGATTTct
                     caaaaagaAGAAGAAACTATTGATAACcataagaacgaccatcacacggtttttgaag
                     a"
                     /listShort="divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    69095..69113
                     /Source="Nicolas_upshift_promotors"
                     /id="U59"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=532
                     /SigmaFactorBS="tctaacttttagacgttattttgaaaaaggtGCAGGATTTct
                     caaaaagaAGAAGAAACTATTGATAACcataagaacgaccatcacacggtttttgaag
                     a"
                     /listShort="divIC, yabR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        69105
                     /Source="Nicolas_upshifts"
                     /id="U59"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=532
                     /SigmaFactorBS="tctaacttttagacgttattttgaaaaaggtGCAGGATTTct
                     caaaaagaAGAAGAAACTATTGATAACcataagaacgaccatcacacggtttttgaag
                     a"
                     /listShort="divIC, yabR"
                     /GFF_Attribute="listLong"
     CDS             69168..69545
                     /gene="divIC"
                     /locus_tag="BSU_00620"
                     /old_locus_tag="BSU00620"
                     /function="16.13: Shape"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10844672, 11283287, 11994149, 12682299, 16936019,
                     20870765, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10844672, 11283287,
                     11994149, 12682299, 16936019, 20870765, 22720735; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="cell-division initiation protein"
                     /protein_id="NP_387943.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00620"
                     /db_xref="EnsemblGenomes-Tr:CAB11838"
                     /db_xref="GOA:P37471"
                     /db_xref="InterPro:IPR007060"
                     /db_xref="SubtiList:BG10125"
                     /db_xref="UniProtKB/Swiss-Prot:P37471"
                     /translation="MNFSRERTITEIQNDYKEQVERQNQLKKRRRKGLYRRLTVFGAL
                     VFLTAIVLASSVWSQTSSLSAKEEKKEQLEKELKSLKTKQTDLKEEISKLKDEDYVTE
                     LARRDLFMSGDGEIIFNVEKKSK*"
     gene            69168..69545
                     /gene="divIC"
                     /locus_tag="BSU_00620"
                     /old_locus_tag="BSU00620"
     CDS             69626..70012
                     /gene="yabR"
                     /locus_tag="BSU_00630"
                     /old_locus_tag="BSU00630"
                     /EC_number="2.7.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9862121, 15066026,
                     16014871, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA degradation protein;
                     polyribonucleotide nucleotidyltransferase or
                     phosphorylase"
                     /protein_id="NP_387944.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00630"
                     /db_xref="EnsemblGenomes-Tr:CAB11839"
                     /db_xref="GOA:P37560"
                     /db_xref="InterPro:IPR003029"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR022967"
                     /db_xref="SubtiList:BG10126"
                     /db_xref="UniProtKB/Swiss-Prot:P37560"
                     /translation="MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVK
                     DINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFL
                     KDSEDRLSSLKRNTESKRGGRGARRG*"
     gene            69626..70012
                     /gene="yabR"
                     /locus_tag="BSU_00630"
                     /old_locus_tag="BSU00630"
     downshifts      70006
                     /Source="Nicolas_upshifts"
                     /id="D29"
                     /incds=0
                     /nref=247
                     /ntot=274
                     /MaxReadThrough="3.67278"
                     /MaxDrop="8.3221"
                     /score="23.2738869"
                     /energy="-12.5"
                     /TU="U58"
                     /idTUdmin="U53"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     promotor_-35    70120..70127
                     /Source="Nicolas_upshift_promotors"
                     /id="U60"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2412
                     /SigmaFactorBS="gaaaattacaacattaaagtttctGTTGACGAaagagacaaa
                     cctTTGTATTATATAACTTGTGCttagaagcacaaaacaatatggcggtgtagctcag
                     c"
                     /listShort="trnSL-Met1, trnSL-Glu1, S36, spoIIE, yabS,
                     yabT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    70141..70160
                     /Source="Nicolas_upshift_promotors"
                     /id="U60"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2412
                     /SigmaFactorBS="gaaaattacaacattaaagtttctGTTGACGAaagagacaaa
                     cctTTGTATTATATAACTTGTGCttagaagcacaaaacaatatggcggtgtagctcag
                     c"
                     /listShort="trnSL-Met1, trnSL-Glu1, S36, spoIIE, yabS,
                     yabT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        70156
                     /Source="Nicolas_upshifts"
                     /id="U60"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2412
                     /SigmaFactorBS="gaaaattacaacattaaagtttctGTTGACGAaagagacaaa
                     cctTTGTATTATATAACTTGTGCttagaagcacaaaacaatatggcggtgtagctcag
                     c"
                     /listShort="trnSL-Met1, trnSL-Glu1, S36, spoIIE, yabS,
                     yabT"
                     /GFF_Attribute="listLong"
     tRNA            70181..70257
                     /gene="trnSL-Met1"
                     /locus_tag="BSU_tRNA_10"
                     /product="tRNA-Met"
                     /inference="profile:tRNAscan:1.23"
                     /note="methionine transfer RNA (CAU); Evidence 2a:
                     Function from experimental evidences in other organisms;
                     Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            70181..70257
                     /gene="trnSL-Met1"
                     /locus_tag="BSU_tRNA_10"
     tRNA            70267..70338
                     /gene="trnSL-Glu1"
                     /locus_tag="BSU_tRNA_11"
                     /product="tRNA-Glu"
                     /inference="profile:tRNAscan:1.23"
                     /note="glutamate transfer RNA (UUC); Evidence 2a:
                     Functionfrom experimental evidences in other organisms;
                     Producttype n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            70267..70338
                     /gene="trnSL-Glu1"
                     /locus_tag="BSU_tRNA_11"
     downshifts      70337
                     /Source="Nicolas_upshifts"
                     /id="D30"
                     /incds=0
                     /nref=2
                     /ntot=58
                     /MaxReadThrough="4.83761"
                     /MaxDrop="5.55326"
                     /score="25.2769629"
                     /energy="-10.8"
                     /TU="U58,U60"
                     /idTUdmin="U58"
                     /TUdmin="-198"
                     /isTUend="FALSE"
     S_feature       70382..70493
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_70382_70493"
                     /HighExp="Cold, G180, C30, G135, G150, Oxctl, Paraq, H2O2,
                     Heat, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigWXY"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S36"
     misc_feature    70489..70508
                     /Source="Nicolas_upshift_promotors"
                     /id="U61"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.99000999000999"
                     /xcortree=442
                     /SigmaFactorBS="cgtcgaagatttctttggtattgttaccttcttttgacaaaa
                     tcctatctgtgcTTTCGCTATAATGACAGGCAacgaatataacaggtgggagatgaga
                     g"
                     /listShort="spoIIE, yabS, yabT, tilS"
                     /listLong="hprT, S38, ftsH"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        70495
                     /Source="Nicolas_upshifts"
                     /id="U61"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.99000999000999"
                     /xcortree=442
                     /SigmaFactorBS="cgtcgaagatttctttggtattgttaccttcttttgacaaaa
                     tcctatctgtgcTTTCGCTATAATGACAGGCAacgaatataacaggtgggagatgaga
                     g"
                     /listShort="spoIIE, yabS, yabT, tilS"
                     /listLong="hprT, S38, ftsH"
     CDS             70538..73021
                     /gene="spoIIE"
                     /locus_tag="BSU_00640"
                     /old_locus_tag="BSU00640"
                     /EC_number="3.1.3.16"
                     /function="16.3: Control"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10747015, 12180929, 15126482, 15866939, 15978076,
                     28358838"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10747015, 12180929,
                     15126482, 15866939, 15978076, 28358838; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIAA-phosphate serine phosphatase"
                     /protein_id="NP_387945.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00640"
                     /db_xref="EnsemblGenomes-Tr:CAB11840"
                     /db_xref="GOA:P37475"
                     /db_xref="InterPro:IPR001932"
                     /db_xref="InterPro:IPR014221"
                     /db_xref="InterPro:IPR036457"
                     /db_xref="PDB:3T91"
                     /db_xref="PDB:3T9Q"
                     /db_xref="PDB:5UCG"
                     /db_xref="SubtiList:BG10127"
                     /db_xref="UniProtKB/Swiss-Prot:P37475"
                     /translation="MEKAERRVNGPMAGQALEKLQSFFNRGTKLVTHHLHSLFFYKGF
                     IYVVIGFLLGRAFILSEVLPFALPFFGAMLLIRRDKAFYAVLAVLAGALTISPKHSLL
                     ILAALLAFFVFSKVAAFITDDRVKALPIVVFFSMAAARAGFVYAQNGVFTTYDYVMAI
                     VEAGLSFILTLIFLQSLPIFTVKKVKQSLKIEEIICFMILIASVLTGLAGLSYQGMQA
                     EHILARYVVLSFSFIGGASIGCTVGVVTGLILGLANIGNLYQMSLLAFSGLLGGLLKE
                     GKKAGAAIGLIVGSLLISLYGEGSAGLMTTLYESLIAVCLFLLTPQSITRKVARYIPG
                     TVEHLQEQQQYARKIRDVTAQKVDQFSNVFHALSESFATFYQASDEQTDDSEVDLFLS
                     KITEHSCQTCYKKNRCWVQNFDKTYDLMKQVMLETEEKEYASNRRLKKEFQQYCSKSK
                     QVEELIEDELAHHHAHLTLKKKVQDSRRLVAEQLLGVSEVMADFSREIKREREQHFLQ
                     EEQIIEALQHFGIEIQHVEIYSLEQGNIDIEMTIPFSGHGESEKIIAPMLSDILEEQI
                     LVKAEQHSPHPNGYSHVAFGSTKSYRVSTGAAHAAKGGGLVSGDSYSMMELGARKYAA
                     AISDGMGNGARAHFESNETIKLLEKILESGIDEKIAIKTINSILSLRTTDEIYSTLDL
                     SIIDLQDASCKFLKVGSTPSFIKRGDQVMKVQASNLPIGIINEFDVEVVSEQLKAGDL
                     LIMMSDGIFEGPKHVENHDLWMKRKMKGLKTNDPQEIADLLMEEVIRTRSGQIEDDMT
                     VVVVRIDHNTPKWASIPVPAIFQNKQEIS*"
     gene            70538..73021
                     /gene="spoIIE"
                     /locus_tag="BSU_00640"
                     /old_locus_tag="BSU00640"
     downshifts      70579
                     /Source="Nicolas_upshifts"
                     /id="D31"
                     /incds=0
                     /nref=1
                     /ntot=20
                     /MaxReadThrough="5.5737"
                     /MaxDrop="3.93473"
                     /score="25.2769629"
                     /energy="-10.8"
                     /TU="U60,U61"
                     /idTUdmin="U58"
                     /TUdmin=44
                     /isTUend="FALSE"
     S_feature       complement(71190..71799)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_71190_71799_c"
                     /HighExp="S8, S6, S4, S5, S3, S7, M9-stat, T5.0H, LoTm,
                     Pyr"
                     /AntisenseName="spoIIE"
                     /AntisenseCor="0.685558251745638"
                     /AntisenseRegPval="-38"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S37"
     downshifts      complement(71216)
                     /Source="Nicolas_upshifts"
                     /id="D32"
                     /incds=1
                     /nref=2
                     /ntot=11
                     /MaxReadThrough="2.2425"
                     /MaxDrop="4.29972"
                     /score="-0.425236437"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U62"
                     /TUdmin=11
                     /isTUend="TRUE"
     promotor_-10    complement(71772..71790)
                     /Source="Nicolas_upshift_promotors"
                     /id="U62"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1071
                     /SigmaFactorBS="cttttttcagccttcggtttgatgcatattctttttcctctg
                     tttcaAGCATAacttgtttcattaagTCATATGTTTTATCAAAGTtctgtacccagca
                     c"
                     /listShort="S37"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(71798)
                     /Source="Nicolas_upshifts"
                     /id="U62"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1071
                     /SigmaFactorBS="cttttttcagccttcggtttgatgcatattctttttcctctg
                     tttcaAGCATAacttgtttcattaagTCATATGTTTTATCAAAGTtctgtacccagca
                     c"
                     /listShort="S37"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(71806..71811)
                     /Source="Nicolas_upshift_promotors"
                     /id="U62"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1071
                     /SigmaFactorBS="cttttttcagccttcggtttgatgcatattctttttcctctg
                     tttcaAGCATAacttgtttcattaagTCATATGTTTTATCAAAGTtctgtacccagca
                     c"
                     /listShort="S37"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    72003..72009
                     /Source="Nicolas_upshift_promotors"
                     /id="U63"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=158
                     /SigmaFactorBS="ccttgttgctgaacagcttttaggcgtttctgAGGTTATggc
                     cgacttttctcGGGAAATAAAAAGAGAGCGagaacaacactttctgcaggaagagcaa
                     a"
                     /listShort="yabS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    72024..72042
                     /Source="Nicolas_upshift_promotors"
                     /id="U63"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=158
                     /SigmaFactorBS="ccttgttgctgaacagcttttaggcgtttctgAGGTTATggc
                     cgacttttctcGGGAAATAAAAAGAGAGCGagaacaacactttctgcaggaagagcaa
                     a"
                     /listShort="yabS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        72031
                     /Source="Nicolas_upshifts"
                     /id="U63"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=158
                     /SigmaFactorBS="ccttgttgctgaacagcttttaggcgtttctgAGGTTATggc
                     cgacttttctcGGGAAATAAAAAGAGAGCGagaacaacactttctgcaggaagagcaa
                     a"
                     /listShort="yabS"
                     /GFF_Attribute="listLong"
     promotor_-35    73041..73044
                     /Source="Nicolas_upshift_promotors"
                     /id="U64"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.842157842157842"
                     /psig="0.842157842157842"
                     /xcortree=1198
                     /SigmaFactorBS="aacaagaaatttcataacgcttccgtataaatcaaaTTTCtt
                     ctggcgaagatgggaATATATGAATCTGAGAATcctcgtattctccaggaggaatgaa
                     t"
                     /listShort="yabS, yabT, tilS, hprT, S38, ftsH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    73062..73079
                     /Source="Nicolas_upshift_promotors"
                     /id="U64"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.842157842157842"
                     /psig="0.842157842157842"
                     /xcortree=1198
                     /SigmaFactorBS="aacaagaaatttcataacgcttccgtataaatcaaaTTTCtt
                     ctggcgaagatgggaATATATGAATCTGAGAATcctcgtattctccaggaggaatgaa
                     t"
                     /listShort="yabS, yabT, tilS, hprT, S38, ftsH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        73065
                     /Source="Nicolas_upshifts"
                     /id="U64"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.842157842157842"
                     /psig="0.842157842157842"
                     /xcortree=1198
                     /SigmaFactorBS="aacaagaaatttcataacgcttccgtataaatcaaaTTTCtt
                     ctggcgaagatgggaATATATGAATCTGAGAATcctcgtattctccaggaggaatgaa
                     t"
                     /listShort="yabS, yabT, tilS, hprT, S38, ftsH"
                     /GFF_Attribute="listLong"
     CDS             73106..73843
                     /gene="yabS"
                     /locus_tag="BSU_00650"
                     /old_locus_tag="BSU00650"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_387946.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00650"
                     /db_xref="EnsemblGenomes-Tr:CAB11841"
                     /db_xref="InterPro:IPR002035"
                     /db_xref="InterPro:IPR036465"
                     /db_xref="SubtiList:BG10128"
                     /db_xref="UniProtKB/Swiss-Prot:P37561"
                     /translation="MNNGHLNQILLITDGCSNHGEDPLAMAAFAKEQGITVNVIGIME
                     ENQIDPEAMKEVEGIALAGGGVHQVVYASQLSQTVQMVTKKAMTQTLQGVVNQELKQI
                     LGKNVEMEELSPEKRGEVMEVVDELGETVHLQVLVLVDTSASMAPKLPTVKEALIDLS
                     VSLNSRIGNNEFAMCIFPGKKQEVELVLNWTPKLQSLSTLFAKLSTGGITPTGPAIRE
                     ATLQFEKIRSRRGMLADDERRFDEFGM*"
     gene            73106..73843
                     /gene="yabS"
                     /locus_tag="BSU_00650"
                     /old_locus_tag="BSU00650"
     CDS             73809..74825
                     /gene="prkT"
                     /locus_tag="BSU_00660"
                     /old_locus_tag="BSU00660"
                     /EC_number="2.7.11.1"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:23634894, 24731262, 25278935"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23634894, 24731262,
                     25278935; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="NP_387947.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00660"
                     /db_xref="EnsemblGenomes-Tr:CAB11842"
                     /db_xref="GOA:P37562"
                     /db_xref="InterPro:IPR000719"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="InterPro:IPR017441"
                     /db_xref="SubtiList:BG10129"
                     /db_xref="UniProtKB/Swiss-Prot:P37562"
                     /translation="MMNDALTSLACSLKPGTTIKGKWNGNTYTLRKQLGKGANGIVYL
                     AETSDGHVALKVSDDSLSITSEVNVLKSFSKAQSVTMGPSFFDTDDAYIPSANTKVSF
                     YAMEYIKGPLLLKYVSDKGAEWIPVLMIQLLSSLSVLHQQGWIFGDLKPDNLIVTGPP
                     ARIRCIDVGGTTKEGRAIKEYTEFYDRGYWGYGTRKAEPSYDLFAVAMIMINSVHKKE
                     FKKTNQPKEQLRSLIEGNPLLQKYKKALFSALNGDYQSADEMKKDMLDAGQKAAQRKQ
                     PIKASPQPATRQRQQKPRQGKITKTRYTPKQKPAKSGGLFETTLIVISVLALYFAYII
                     FFLI*"
     gene            73809..74825
                     /gene="prkT"
                     /locus_tag="BSU_00660"
                     /old_locus_tag="BSU00660"
     promotor_-35    74357..74363
                     /Source="Nicolas_upshift_promotors"
                     /id="U65"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=159
                     /SigmaFactorBS="aaggaaggccgggcgataaaagagtatacggaGTTTTATgac
                     agaggctattggGGGTATGGAACAAGAAAGGcagagccatcctatgatctgttcgcag
                     t"
                     /GFF_Attribute="listShort"
                     /listLong="tilS, hprT, S38, ftsH"
                     /label="promotor_-35"
     promotor_-10    74379..74397
                     /Source="Nicolas_upshift_promotors"
                     /id="U65"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=159
                     /SigmaFactorBS="aaggaaggccgggcgataaaagagtatacggaGTTTTATgac
                     agaggctattggGGGTATGGAACAAGAAAGGcagagccatcctatgatctgttcgcag
                     t"
                     /GFF_Attribute="listShort"
                     /listLong="tilS, hprT, S38, ftsH"
                     /label="promotor_-10"
     upshifts        74385
                     /Source="Nicolas_upshifts"
                     /id="U65"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=159
                     /SigmaFactorBS="aaggaaggccgggcgataaaagagtatacggaGTTTTATgac
                     agaggctattggGGGTATGGAACAAGAAAGGcagagccatcctatgatctgttcgcag
                     t"
                     /GFF_Attribute="listShort"
                     /listLong="tilS, hprT, S38, ftsH"
     promotor_-35    74855..74862
                     /Source="Nicolas_upshift_promotors"
                     /id="U66"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=1948
                     /SigmaFactorBS="atggtgcaaactgcagagcctatgcttctTCTTTGCTtggag
                     gggttgaaAGTGTTAGGATATGAATATCtttaaaatacctgctcattgtgaggaggac
                     a"
                     /listShort="tilS, hprT, S38, ftsH, S39, S40, coaX, hslO,
                     yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    74876..74895
                     /Source="Nicolas_upshift_promotors"
                     /id="U66"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=1948
                     /SigmaFactorBS="atggtgcaaactgcagagcctatgcttctTCTTTGCTtggag
                     gggttgaaAGTGTTAGGATATGAATATCtttaaaatacctgctcattgtgaggaggac
                     a"
                     /listShort="tilS, hprT, S38, ftsH, S39, S40, coaX, hslO,
                     yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-10"
     upshifts        74886
                     /Source="Nicolas_upshifts"
                     /id="U66"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=1948
                     /SigmaFactorBS="atggtgcaaactgcagagcctatgcttctTCTTTGCTtggag
                     gggttgaaAGTGTTAGGATATGAATATCtttaaaatacctgctcattgtgaggaggac
                     a"
                     /listShort="tilS, hprT, S38, ftsH, S39, S40, coaX, hslO,
                     yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
     CDS             74929..76347
                     /gene="tilS"
                     /locus_tag="BSU_00670"
                     /old_locus_tag="BSU00670"
                     /EC_number="6.3.4.19"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14527414, 16039592, 17005971, 22720735,
                     24001521"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14527414,
                     16039592, 17005971, 22720735, 24001521; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(ile2) lysidine synthetase"
                     /protein_id="NP_387948.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00670"
                     /db_xref="EnsemblGenomes-Tr:CAB11843"
                     /db_xref="GOA:P37563"
                     /db_xref="InterPro:IPR011063"
                     /db_xref="InterPro:IPR012094"
                     /db_xref="InterPro:IPR012795"
                     /db_xref="InterPro:IPR012796"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR015262"
                     /db_xref="InterPro:IPR020825"
                     /db_xref="SubtiList:BG10130"
                     /db_xref="UniProtKB/Swiss-Prot:P37563"
                     /translation="MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRS
                     ANVIAAHVDHRFRGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAAR
                     DCRYQFFEEIMSKHQADYLALAHHGDDQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR
                     IIRPFLTITKEEILHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKR
                     FQKVSEALTEDEQFLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLIL
                     NYLYENVPSSFSAHHIQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLFTFEQWQCKN
                     VPFEYQISGAADETAVLPNGYLIEARHYADSPEEHGNAVFITSEKKVRFPLTIRTRKA
                     GDRIKLKGMNGSKKVKDIFIDKKLPLQERDNWPIVTDASGEIIWIPGLKKSIFEDLVI
                     PNSDRIVLQYRQHEKCRGQAKS*"
     gene            74929..76347
                     /gene="tilS"
                     /locus_tag="BSU_00670"
                     /old_locus_tag="BSU00670"
     promotor_-35    75724..75731
                     /Source="Nicolas_upshift_promotors"
                     /id="U67"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig="0.999000999001"
                     /xcortree=1885
                     /SigmaFactorBS="aaatcaattcctctcaattgcttgccctcccgatgCCTTTAC
                     AaagaagaggagttcAACTAATATTAAACTATCTTtatgaaaacgttccatcatcctt
                     t"
                     /listShort="hprT, S38, ftsH, S39, S40, coaX, hslO, yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    75746..75765
                     /Source="Nicolas_upshift_promotors"
                     /id="U67"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig="0.999000999001"
                     /xcortree=1885
                     /SigmaFactorBS="aaatcaattcctctcaattgcttgccctcccgatgCCTTTAC
                     AaagaagaggagttcAACTAATATTAAACTATCTTtatgaaaacgttccatcatcctt
                     t"
                     /listShort="hprT, S38, ftsH, S39, S40, coaX, hslO, yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-10"
     upshifts        75749
                     /Source="Nicolas_upshifts"
                     /id="U67"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.721278721278721"
                     /psig="0.999000999001"
                     /xcortree=1885
                     /SigmaFactorBS="aaatcaattcctctcaattgcttgccctcccgatgCCTTTAC
                     AaagaagaggagttcAACTAATATTAAACTATCTTtatgaaaacgttccatcatcctt
                     t"
                     /listShort="hprT, S38, ftsH, S39, S40, coaX, hslO, yacD"
                     /listLong="cysK, pabB, pabA, pabC, sul, folB, folK, yazB,
                     dusB, S42, lysS, S43, rrnJ-16S"
     downshifts      complement(76342)
                     /Source="Nicolas_upshifts"
                     /id="D33"
                     /incds=0
                     /nref=2
                     /ntot=142
                     /MaxReadThrough="2.51342"
                     /MaxDrop="2.96272"
                     /score="12.3455896"
                     /energy="-9.1"
                     /TU="NA"
                     /idTUdmin="U68"
                     /TUdmin="-11"
                     /isTUend="TRUE"
     CDS             76344..76886
                     /gene="hprT"
                     /locus_tag="BSU_00680"
                     /old_locus_tag="BSU00680"
                     /EC_number="2.4.2.8"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3110131, 6408059, 24001521"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3110131, 6408059,
                     24001521; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="NP_387949.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00680"
                     /db_xref="EnsemblGenomes-Tr:CAB11844"
                     /db_xref="GOA:P37472"
                     /db_xref="InterPro:IPR000836"
                     /db_xref="InterPro:IPR005904"
                     /db_xref="InterPro:IPR029057"
                     /db_xref="SubtiList:BG10131"
                     /db_xref="UniProtKB/Swiss-Prot:P37472"
                     /translation="MMKHDIEKVLISEEEIQKKVKELGAELTSEYQDTFPLAIGVLKG
                     ALPFMADLIKHIDTYLEMDFMDVSSYGNSTVSSGEVKIIKDLDTSVEGRDILIIEDII
                     DSGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDY
                     AERYRNLPYIGVLKPAVYES*"
     gene            76344..76886
                     /gene="hprT"
                     /locus_tag="BSU_00680"
                     /old_locus_tag="BSU00680"
     upshifts        complement(76749)
                     /Source="Nicolas_upshifts"
                     /id="U68"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.988011988011988"
                     /psig="0.002997002997003"
                     /xcortree=41
                     /SigmaFactorBS="aacccactacaaacgcgtcaggaacttcaaaacCGACaaagt
                     ctgctttgatgtCCGCTtttcttccgctcggtttatccaaaagggtaacaatcttaat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(76751..76755)
                     /Source="Nicolas_upshift_promotors"
                     /id="U68"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.988011988011988"
                     /psig="0.002997002997003"
                     /xcortree=41
                     /SigmaFactorBS="aacccactacaaacgcgtcaggaacttcaaaacCGACaaagt
                     ctgctttgatgtCCGCTtttcttccgctcggtttatccaaaagggtaacaatcttaat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(76773..76776)
                     /Source="Nicolas_upshift_promotors"
                     /id="U68"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.988011988011988"
                     /psig="0.002997002997003"
                     /xcortree=41
                     /SigmaFactorBS="aacccactacaaacgcgtcaggaacttcaaaacCGACaaagt
                     ctgctttgatgtCCGCTtttcttccgctcggtttatccaaaagggtaacaatcttaat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       76887..76983
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_76887_76983"
                     /HighExp="Diami, H2O2, dia5, G135, dia15, G150, Paraq,
                     C90, G180, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigEF"
                     /TUshortPSig="0.999, 1, 0.842"
                     /TUlongSig="SigB, SigA"
                     /TUlongPSig="1, 0.99"
                     /label="S38"
     CDS             76984..78897
                     /gene="ftsH"
                     /locus_tag="BSU_00690"
                     /old_locus_tag="BSU00690"
                     /EC_number="3.4.24.-"
                     /function="16.9: Replicate"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:9076729, 9084181, 9287010, 9352926, 10851010,
                     10913836, 12533473, 24001521, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9076729, 9084181,
                     9287010, 9352926, 10851010, 10913836, 12533473, 24001521,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent cytoplasmic membrane protease"
                     /protein_id="NP_387950.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00690"
                     /db_xref="EnsemblGenomes-Tr:CAB11845"
                     /db_xref="GOA:P37476"
                     /db_xref="InterPro:IPR000642"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR003959"
                     /db_xref="InterPro:IPR003960"
                     /db_xref="InterPro:IPR005936"
                     /db_xref="InterPro:IPR011546"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR037219"
                     /db_xref="SubtiList:BG10132"
                     /db_xref="UniProtKB/Swiss-Prot:P37476"
                     /translation="MNRVFRNTIFYLLILLVVIGVVSYFQTSNPKTENMSYSTFIKNL
                     DDGKVDSVSVQPVRGVYEVKGQLKNYDKDQYFLTHVPEGKGADQIFNALKKTDVKVEP
                     AQETSGWVTFLTTIIPFVIIFILFFFLLNQAQGGGSRVMNFGKSKAKLYTEEKKRVKF
                     KDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLAKACAGEA
                     GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGG
                     HDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVI
                     GREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQNKKKIDAR
                     DIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQ
                     AGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIAR
                     RMVTEFGMSEKLGPLQFGQSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYE
                     RAKQILTENRDKLELIAQTLLKVETLDAEQIKHLIDHGTLPERNFSDDEKNDDVKVNI
                     LTKTEEKKDDTKE*"
     gene            76984..78897
                     /gene="ftsH"
                     /locus_tag="BSU_00690"
                     /old_locus_tag="BSU00690"
     downshifts      78895
                     /Source="Nicolas_upshifts"
                     /id="D34"
                     /incds=0
                     /nref=187
                     /ntot=269
                     /MaxReadThrough="5.00908"
                     /MaxDrop="8.91482"
                     /score="38.4132386"
                     /energy="-12.9"
                     /TU="U66,U67"
                     /idTUdmin="U64"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_feature    complement(78934..78938)
                     /Source="Nicolas_upshift_promotors"
                     /id="U69"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.955044955044955"
                     /psig="0.000999000999001"
                     /xcortree=66
                     /SigmaFactorBS="aaatcgataccagaattggatgattgtaaaagccgcagctga
                     gccaatcatttacataaaaaaaCTGCCagcgtcagccggcagtttttttagaaagaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       78940..79025
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_78940_79025"
                     /HighExp="H2O2, G180, G135, dia15, Paraq, G150, Oxctl,
                     Diami, Cold, LBGexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S39"
     upshifts        complement(78942)
                     /Source="Nicolas_upshifts"
                     /id="U69"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.955044955044955"
                     /psig="0.000999000999001"
                     /xcortree=66
                     /SigmaFactorBS="aaatcgataccagaattggatgattgtaaaagccgcagctga
                     gccaatcatttacataaaaaaaCTGCCagcgtcagccggcagtttttttagaaagaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    79002..79009
                     /Source="Nicolas_upshift_promotors"
                     /id="U70"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig=1
                     /xcortree=1864
                     /SigmaFactorBS="gcggcttttacaatcatccaattctggtatcgattTGTTTAC
                     AaatgagccgctgaTCGTGTATGGTATTGTAGAAtgtttgtaaaaagtaaagtagaga
                     a"
                     /listShort="S40, coaX, hslO, yacD, cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    79023..79042
                     /Source="Nicolas_upshift_promotors"
                     /id="U70"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig=1
                     /xcortree=1864
                     /SigmaFactorBS="gcggcttttacaatcatccaattctggtatcgattTGTTTAC
                     AaatgagccgctgaTCGTGTATGGTATTGTAGAAtgtttgtaaaaagtaaagtagaga
                     a"
                     /listShort="S40, coaX, hslO, yacD, cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS, S43, rrnJ-16S"
                     /label="promotor_-10"
     S_feature       79027..79091
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_79027_79091"
                     /HighExp="dia5, H2O2, dia15, Paraq, Diami, G180, LBGexp,
                     Oxctl, G135, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="1, 0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S40"
     upshifts        79027
                     /Source="Nicolas_upshifts"
                     /id="U70"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig=1
                     /xcortree=1864
                     /SigmaFactorBS="gcggcttttacaatcatccaattctggtatcgattTGTTTAC
                     AaatgagccgctgaTCGTGTATGGTATTGTAGAAtgtttgtaaaaagtaaagtagaga
                     a"
                     /listShort="S40, coaX, hslO, yacD, cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS, S43, rrnJ-16S"
     CDS             79092..79868
                     /gene="coaX"
                     /locus_tag="BSU_00700"
                     /old_locus_tag="BSU00700"
                     /EC_number="2.7.1.33"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15795230, 16905099, 24784177"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15795230, 16905099,
                     24784177; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pantothenate kinase type III"
                     /protein_id="NP_387951.2"
                     /db_xref="EnsemblGenomes-Gn:BSU00700"
                     /db_xref="EnsemblGenomes-Tr:CAB11846"
                     /db_xref="GOA:P37564"
                     /db_xref="InterPro:IPR004619"
                     /db_xref="SubtiList:BG10133"
                     /db_xref="UniProtKB/Swiss-Prot:P37564"
                     /translation="MLLVIDVGNTNTVLGVYHDGKLEYHWRIETSRHKTEDEFGMILR
                     SLFDHSGLMFEQIDGIIISSVVPPIMFALERMCTKYFHIEPQIVGPGMKTGLNIKYDN
                     PKEVGADRIVNAVAAIHLYGNPLIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEA
                     LYSRAAKLPRIEITRPDNIIGKNTVSAMQSGILFGYVGQVEGIVKRMKWQAKQEPKVI
                     ATGGLAPLIANESDCIDIVDPFLTLKGLELIYERNRVGSV*"
     gene            79092..79868
                     /gene="coaX"
                     /locus_tag="BSU_00700"
                     /old_locus_tag="BSU00700"
     CDS             79880..80755
                     /gene="hslO"
                     /locus_tag="BSU_00710"
                     /old_locus_tag="BSU00710"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11323724, 15023991; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond chaperone (heat shock protein
                     HSP33)"
                     /protein_id="NP_387952.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00710"
                     /db_xref="EnsemblGenomes-Tr:CAB11847"
                     /db_xref="GOA:P37565"
                     /db_xref="InterPro:IPR000397"
                     /db_xref="InterPro:IPR016153"
                     /db_xref="InterPro:IPR016154"
                     /db_xref="PDB:1VZY"
                     /db_xref="SubtiList:BG10134"
                     /db_xref="UniProtKB/Swiss-Prot:P37565"
                     /translation="MDYLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWPTASAALGR
                     TMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADANAKGEVRAYVSNPQVHFDLNEQG
                     KLDVRRAVGTNGTLSVVKDLGLREFFTGQVEIVSGELGDDFTYYLVSSEQVPSSVGVG
                     VLVNPDNTILAAGGFIIQLMPGTDDETITKIEQRLSQVEPISKLIQKGLTPEEILEEV
                     LGEKPEILETMPVRFHCPCSKERFETAILGLGKKEIQDMIEEDGQAEAVCHFCNEKYL
                     FTKEELEGLRDQTTR*"
     gene            79880..80755
                     /gene="hslO"
                     /locus_tag="BSU_00710"
                     /old_locus_tag="BSU00710"
     CDS             80802..81695
                     /gene="yacD"
                     /locus_tag="BSU_00720"
                     /old_locus_tag="BSU00720"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15187182, 15856219;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein chaperone accessory
                     lipoproteinfactor"
                     /protein_id="NP_387953.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00720"
                     /db_xref="EnsemblGenomes-Tr:CAB11848"
                     /db_xref="GOA:P37566"
                     /db_xref="InterPro:IPR000297"
                     /db_xref="InterPro:IPR023058"
                     /db_xref="InterPro:IPR027304"
                     /db_xref="SubtiList:BG10135"
                     /db_xref="UniProtKB/Swiss-Prot:P37566"
                     /translation="MKSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGG
                     KSVTREEWLKEMEDQYGKSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKAVNN
                     SFYEDEHTTEKEWKDQIRYNILLEDLLTRDIDISNKELESFYNKNKELYQFDDSYRIR
                     HIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYI
                     EEAKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKA
                     TVKTLWKEADVSWFYGEKSTK*"
     gene            80802..81695
                     /gene="yacD"
                     /locus_tag="BSU_00720"
                     /old_locus_tag="BSU00720"
     promotor_-35    81425..81430
                     /Source="Nicolas_upshift_promotors"
                     /id="U71"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1220
                     /SigmaFactorBS="catcaccatacggcggagatttaggttttgtcacagaGGCAT
                     CagacaacattccatcaGCATACATTGAAGAGGCGAaaacactcaaagaggatgaatg
                     g"
                     /listShort="cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /label="promotor_-35"
     promotor_-10    81447..81465
                     /Source="Nicolas_upshift_promotors"
                     /id="U71"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1220
                     /SigmaFactorBS="catcaccatacggcggagatttaggttttgtcacagaGGCAT
                     CagacaacattccatcaGCATACATTGAAGAGGCGAaaacactcaaagaggatgaatg
                     g"
                     /listShort="cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /label="promotor_-10"
     upshifts        81448
                     /Source="Nicolas_upshifts"
                     /id="U71"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1220
                     /SigmaFactorBS="catcaccatacggcggagatttaggttttgtcacagaGGCAT
                     CagacaacattccatcaGCATACATTGAAGAGGCGAaaacactcaaagaggatgaatg
                     g"
                     /listShort="cysK"
                     /listLong="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
     promotor_-35    81694..81701
                     /Source="Nicolas_upshift_promotors"
                     /id="U72"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig=1
                     /xcortree=1740
                     /SigmaFactorBS="tcttggttttatggggaaaaaagtactaagtGATTGACAaaa
                     aattttgaaatTGATAGATTATATACATAATaccaatacaaatagtcggaaattgagg
                     t"
                     /listShort="cysK, pabB, pabA, pabC, sul"
                     /listLong="folB, folK, yazB, dusB, S42, lysS, S43,
                     rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    81716..81735
                     /Source="Nicolas_upshift_promotors"
                     /id="U72"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig=1
                     /xcortree=1740
                     /SigmaFactorBS="tcttggttttatggggaaaaaagtactaagtGATTGACAaaa
                     aattttgaaatTGATAGATTATATACATAATaccaatacaaatagtcggaaattgagg
                     t"
                     /listShort="cysK, pabB, pabA, pabC, sul"
                     /listLong="folB, folK, yazB, dusB, S42, lysS, S43,
                     rrnJ-16S"
                     /label="promotor_-10"
     upshifts        81723
                     /Source="Nicolas_upshifts"
                     /id="U72"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig=1
                     /xcortree=1740
                     /SigmaFactorBS="tcttggttttatggggaaaaaagtactaagtGATTGACAaaa
                     aattttgaaatTGATAGATTATATACATAATaccaatacaaatagtcggaaattgagg
                     t"
                     /listShort="cysK, pabB, pabA, pabC, sul"
                     /listLong="folB, folK, yazB, dusB, S42, lysS, S43,
                     rrnJ-16S"
     CDS             81771..82697
                     /gene="cysK"
                     /locus_tag="BSU_00730"
                     /old_locus_tag="BSU00730"
                     /EC_number="2.5.1.47"
                     /EC_number="4.4.1.1"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11390694, 15760717, 16267287, 16513748, 17056751,
                     18974048"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11390694, 15760717,
                     16267287, 16513748, 17056751, 18974048; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase"
                     /protein_id="NP_387954.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00730"
                     /db_xref="EnsemblGenomes-Tr:CAB11849"
                     /db_xref="GOA:P37887"
                     /db_xref="InterPro:IPR001216"
                     /db_xref="InterPro:IPR001926"
                     /db_xref="InterPro:IPR005856"
                     /db_xref="InterPro:IPR005859"
                     /db_xref="InterPro:IPR036052"
                     /db_xref="SubtiList:BG10136"
                     /db_xref="UniProtKB/Swiss-Prot:P37887"
                     /translation="MVRVANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSV
                     KDRIGLAMIEAAEKEGKLKAGNTIIEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSME
                     RRNLLRAYGAELVLTPGAEGMKGAIKKAEELAEKHGYFVPQQFNNPSNPEIHRQTTGK
                     EIVEQFGDDQLDAFVAGIGTGGTITGAGEVLKEAYPSIKIYAVEPSDSPVLSGGKPGP
                     HKIQGIGAGFVPDILNTEVYDEIFPVKNEEAFEYARRAAREEGILGGISSGAAIYAAL
                     QVAKKLGKGKKVLAIIPSNGERYLSTPLYQFD*"
     gene            81771..82697
                     /gene="cysK"
                     /locus_tag="BSU_00730"
                     /old_locus_tag="BSU00730"
     downshifts      82690
                     /Source="Nicolas_upshifts"
                     /id="D35"
                     /incds=0
                     /nref=156
                     /ntot=259
                     /MaxReadThrough="5.90023"
                     /MaxDrop="5.38596"
                     /score="41.7897705"
                     /energy="-11.4"
                     /TU="U72"
                     /idTUdmin="U70"
                     /TUdmin=10
                     /isTUend="TRUE"
     promotor_-35    82744..82752
                     /Source="Nicolas_upshift_promotors"
                     /id="U73"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.787212787212787"
                     /psig="0.787212787212787"
                     /xcortree=1723
                     /SigmaFactorBS="aactcccggttcgccgggagtttttttatatttcgtGCATCA
                     AATatgccatgtctgcGACGAATGTtattcttggaagagaaattcacttttttcacta
                     a"
                     /listShort="pabB"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="promotor_-35"
     promotor_-10    82766..82774
                     /Source="Nicolas_upshift_promotors"
                     /id="U73"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.787212787212787"
                     /psig="0.787212787212787"
                     /xcortree=1723
                     /SigmaFactorBS="aactcccggttcgccgggagtttttttatatttcgtGCATCA
                     AATatgccatgtctgcGACGAATGTtattcttggaagagaaattcacttttttcacta
                     a"
                     /listShort="pabB"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="promotor_-10"
     upshifts        82768
                     /Source="Nicolas_upshifts"
                     /id="U73"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.787212787212787"
                     /psig="0.787212787212787"
                     /xcortree=1723
                     /SigmaFactorBS="aactcccggttcgccgggagtttttttatatttcgtGCATCA
                     AATatgccatgtctgcGACGAATGTtattcttggaagagaaattcacttttttcacta
                     a"
                     /listShort="pabB"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
     promotor_-35    82796..82799
                     /Source="Nicolas_upshift_promotors"
                     /id="U74"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7992007992008"
                     /psig="0.998001998001998"
                     /xcortree=2267
                     /SigmaFactorBS="gcgacgaatgttattcttggaagagaaattcaCTTTtttcac
                     taacaacaTTGCTTTACAATTAAAAACAagtaaaaaagaaaatagaggaatgatacaa
                     a"
                     /listShort="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    82814..82833
                     /Source="Nicolas_upshift_promotors"
                     /id="U74"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7992007992008"
                     /psig="0.998001998001998"
                     /xcortree=2267
                     /SigmaFactorBS="gcgacgaatgttattcttggaagagaaattcaCTTTtttcac
                     taacaacaTTGCTTTACAATTAAAAACAagtaaaaaagaaaatagaggaatgatacaa
                     a"
                     /listShort="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="promotor_-10"
     upshifts        82824
                     /Source="Nicolas_upshifts"
                     /id="U74"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7992007992008"
                     /psig="0.998001998001998"
                     /xcortree=2267
                     /SigmaFactorBS="gcgacgaatgttattcttggaagagaaattcaCTTTtttcac
                     taacaacaTTGCTTTACAATTAAAAACAagtaaaaaagaaaatagaggaatgatacaa
                     a"
                     /listShort="pabB, pabA, pabC, sul, folB, folK, yazB, dusB,
                     S42, lysS"
                     /listLong="S43, rrnJ-16S"
     CDS             82864..84276
                     /gene="pabB"
                     /locus_tag="BSU_00740"
                     /old_locus_tag="BSU00740"
                     /EC_number="2.6.1.85"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2123867, 9084182, 16605270,
                     17114263, 25288929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxychorismate synthase
                     (para-aminobenzoate synthase)"
                     /protein_id="NP_387955.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00740"
                     /db_xref="EnsemblGenomes-Tr:CAB11850"
                     /db_xref="GOA:P28820"
                     /db_xref="InterPro:IPR005801"
                     /db_xref="InterPro:IPR006805"
                     /db_xref="InterPro:IPR015890"
                     /db_xref="InterPro:IPR019999"
                     /db_xref="SubtiList:BG10137"
                     /db_xref="UniProtKB/Swiss-Prot:P28820"
                     /translation="MAQRRPAGKKIPFQKDSFLQQFEKLAQSRKHHVLLESARGGRYS
                     IAGLDPIATVKGKDGITTIKHGDEMLFKEGDPLRAFHSWFKTLETETNHEFPDFQGGA
                     IGFLSYDYARYIENFKMLSLDDLETPDIYFLVFDDIAVYDHQEESLWLITHVNGSDQE
                     TADVKLSELEQMWLTELPAVTSREMKPETAGSFAAPFTEDGFSQAVEKIKQYIASGDV
                     FQVNLSIRQSQSLSVHPYQIYKTLREVNPSPYMAYLETPDFQIICGSPELLVSKKGKL
                     LETRPIAGTRSRGKTNEEDEALANELIHNEKERAEHVMLVDLERNDLGRVSRYGSVRV
                     NEFMAIEKYSHVMHIVSNVQGELQDGYDAVDIIHAVFPGGTITGAPKVRTMEIIEELE
                     PTRRGLYTGSIGWFGYNHDLQFNIVIRTIYATGGQAFMQSGAGVVIDSVPKHEYKESF
                     KKAFAMQRALELSEEETKIR*"
     gene            82864..84276
                     /gene="pabB"
                     /locus_tag="BSU_00740"
                     /old_locus_tag="BSU00740"
     promotor_-35    83666..83668
                     /Source="Nicolas_upshift_promotors"
                     /id="U75"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.621378621378621"
                     /xcortree=608
                     /SigmaFactorBS="cctgatttccaaatcatttgcggatcgcctgaacTGCttgtc
                     agcaaaaagggcAAGCTATTAGAGACGAGACcgattgcgggcacccgttccagaggga
                     a"
                     /GFF_Attribute="listShort"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="promotor_-35"
     promotor_-10    83686..83704
                     /Source="Nicolas_upshift_promotors"
                     /id="U75"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.621378621378621"
                     /xcortree=608
                     /SigmaFactorBS="cctgatttccaaatcatttgcggatcgcctgaacTGCttgtc
                     agcaaaaagggcAAGCTATTAGAGACGAGACcgattgcgggcacccgttccagaggga
                     a"
                     /GFF_Attribute="listShort"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /label="promotor_-10"
     upshifts        83692
                     /Source="Nicolas_upshifts"
                     /id="U75"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.621378621378621"
                     /xcortree=608
                     /SigmaFactorBS="cctgatttccaaatcatttgcggatcgcctgaacTGCttgtc
                     agcaaaaagggcAAGCTATTAGAGACGAGACcgattgcgggcacccgttccagaggga
                     a"
                     /GFF_Attribute="listShort"
                     /listLong="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
     promotor_-35    84033..84040
                     /Source="Nicolas_upshift_promotors"
                     /id="U76"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig="0.998001998001998"
                     /xcortree=2212
                     /SigmaFactorBS="agtaagaacgatggaaattatagaagaACTTGAGCcgacacg
                     ccgagGGCTTTATACTGGATCTATAggatggtttggatataatcacgatctgcagttt
                     a"
                     /listShort="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="promotor_-35"
     promotor_-10    84053..84072
                     /Source="Nicolas_upshift_promotors"
                     /id="U76"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig="0.998001998001998"
                     /xcortree=2212
                     /SigmaFactorBS="agtaagaacgatggaaattatagaagaACTTGAGCcgacacg
                     ccgagGGCTTTATACTGGATCTATAggatggtttggatataatcacgatctgcagttt
                     a"
                     /listShort="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /listLong="S43, rrnJ-16S"
                     /label="promotor_-10"
     upshifts        84066
                     /Source="Nicolas_upshifts"
                     /id="U76"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig="0.998001998001998"
                     /xcortree=2212
                     /SigmaFactorBS="agtaagaacgatggaaattatagaagaACTTGAGCcgacacg
                     ccgagGGCTTTATACTGGATCTATAggatggtttggatataatcacgatctgcagttt
                     a"
                     /listShort="pabA, pabC, sul, folB, folK, yazB, dusB, S42,
                     lysS"
                     /listLong="S43, rrnJ-16S"
     CDS             84290..84874
                     /gene="pabA"
                     /locus_tag="BSU_00750"
                     /old_locus_tag="BSU00750"
                     /EC_number="2.6.1.85"
                     /EC_number="4.1.3.27"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9098056, 16605270, 17114263,
                     24847778; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxychorismate synthase;
                     anthranilatesynthase (subunit II)"
                     /protein_id="NP_387956.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00750"
                     /db_xref="EnsemblGenomes-Tr:CAB11851"
                     /db_xref="GOA:P28819"
                     /db_xref="InterPro:IPR006221"
                     /db_xref="InterPro:IPR017926"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG10138"
                     /db_xref="UniProtKB/Swiss-Prot:P28819"
                     /translation="MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSP
                     DFLMISPGPCSPDEAGISLEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHG
                     KTSDIEHDGKTIFEGLKNPLVATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDL
                     PIEGVQFHPESIMTSFGKEMLRNFIETYRKEVIA*"
     gene            84290..84874
                     /gene="pabA"
                     /locus_tag="BSU_00750"
                     /old_locus_tag="BSU00750"
     CDS             84874..85755
                     /gene="pabC"
                     /locus_tag="BSU_00760"
                     /old_locus_tag="BSU00760"
                     /EC_number="4.1.3.38"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10876155, 1644759, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxychorismate pyruvate-lyase"
                     /protein_id="NP_387957.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00760"
                     /db_xref="EnsemblGenomes-Tr:CAB11852"
                     /db_xref="GOA:P28821"
                     /db_xref="InterPro:IPR001544"
                     /db_xref="InterPro:IPR017824"
                     /db_xref="InterPro:IPR018300"
                     /db_xref="InterPro:IPR036038"
                     /db_xref="SubtiList:BG10139"
                     /db_xref="UniProtKB/Swiss-Prot:P28821"
                     /translation="MIYVNGRYMEEKDAVLSPFDHGFLYGIGVFETFRLYEGCPFLLD
                     WHIERLERALKDLQIEYTVSKHEILEMLDKLLKLNDIKDGNARVRLNISAGISDKGFV
                     AQTYDKPTVLCFVNQLKPESLPLQKEGKVLSIRRNTPEGSFRLKSHHYLNNMYAKREI
                     GNDPRVEGIFLTEDGAVAEGIISNVFWRKGRCIYTPSLDTGILDGVTRRFIIENAKDI
                     GLELKTGRYELEALLTADEAWMTNSVLEIIPFTKIEEVNYGSQSGEATSALQLLYKKE
                     IKNMIHEKGGRAWRSTQ*"
     gene            84874..85755
                     /gene="pabC"
                     /locus_tag="BSU_00760"
                     /old_locus_tag="BSU00760"
     CDS             85737..86594
                     /gene="folP"
                     /locus_tag="BSU_00770"
                     /old_locus_tag="BSU00770"
                     /EC_number="2.5.1.15"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2123867, 11007651; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="NP_387958.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00770"
                     /db_xref="EnsemblGenomes-Tr:CAB11853"
                     /db_xref="GOA:P28822"
                     /db_xref="InterPro:IPR000489"
                     /db_xref="InterPro:IPR006390"
                     /db_xref="InterPro:IPR011005"
                     /db_xref="SubtiList:BG10140"
                     /db_xref="UniProtKB/Swiss-Prot:P28822"
                     /translation="MAQHTIDQTQVIHTKPSALSYKEKTLVMGILNVTPDSFSDGGKY
                     DSLDKALLHAKEMIDDGAHIIDIGGESTRPGAECVSEDEEMSRVIPVIERITKELGVP
                     ISVDTYKASVADEAVKAGASIINDIWGAKHDPKMASVAAEHNVPIVLMHNRPERNYND
                     LLPDMLSDLMESVKIAVEAGVDEKNIILDPGIGFAKTYHDNLAVMNKLEIFSGLGYPV
                     LLATSRKRFIGRVLDLPPEERAEGTGATVCLGIQKGCDIVRVHDVKQIARMAKMMDAM
                     LNKGGVHHG*"
     gene            85737..86594
                     /gene="folP"
                     /locus_tag="BSU_00770"
                     /old_locus_tag="BSU00770"
     CDS             86587..86949
                     /gene="folB"
                     /locus_tag="BSU_00780"
                     /old_locus_tag="BSU00780"
                     /EC_number="4.1.2.25"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16188473, 17176045,
                     17388809; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="NP_387959.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00780"
                     /db_xref="EnsemblGenomes-Tr:CAB11854"
                     /db_xref="GOA:P28823"
                     /db_xref="InterPro:IPR006156"
                     /db_xref="InterPro:IPR006157"
                     /db_xref="SubtiList:BG10141"
                     /db_xref="UniProtKB/Swiss-Prot:P28823"
                     /translation="MDKVYVEGMEFYGYHGVFTEENKLGQRFKVDLTAELDLSKAGQT
                     DDLEQTINYAELYHVCKDIVEGEPVKLVETLAERIAGTVLGKFQPVQQCTVKVIKPDP
                     PIPGHYKSVAIEITRKKS*"
     gene            86587..86949
                     /gene="folB"
                     /locus_tag="BSU_00780"
                     /old_locus_tag="BSU00780"
     CDS             86946..87449
                     /gene="folK"
                     /locus_tag="BSU_00790"
                     /old_locus_tag="BSU00790"
                     /EC_number="2.7.6.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 17029412; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="7,8-dihydro-6-hydroxymethylpterin
                     pyrophosphokinase"
                     /protein_id="NP_387960.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00790"
                     /db_xref="EnsemblGenomes-Tr:CAB11855"
                     /db_xref="GOA:P29252"
                     /db_xref="InterPro:IPR000550"
                     /db_xref="InterPro:IPR035907"
                     /db_xref="SubtiList:BG10142"
                     /db_xref="UniProtKB/Swiss-Prot:P29252"
                     /translation="MNNIAYIALGSNIGDRETYLRQAVALLHQHAAVTVTKVSSIYET
                     DPVGYEDQAQFLNMAVEIKTSLNPFELLELTQQIENELGRTREVRWGPRTADLDILLF
                     NRENIETEQLIVPHPRMYERLFVLAPLAEICQQVEKEATSAETDQEGVRVWKQKSGVD
                     EFVHSES*"
     gene            86946..87449
                     /gene="folK"
                     /locus_tag="BSU_00790"
                     /old_locus_tag="BSU00790"
     CDS             87401..87610
                     /gene="yazB"
                     /locus_tag="BSU_00800"
                     /old_locus_tag="BSU00800"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_387961.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00800"
                     /db_xref="EnsemblGenomes-Tr:CAB11856"
                     /db_xref="GOA:O31417"
                     /db_xref="InterPro:IPR001387"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="SubtiList:BG12701"
                     /db_xref="UniProtKB/Swiss-Prot:O31417"
                     /translation="MEAEIWGRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRL
                     PSAAIIQDAADVLNISADELAPPEK*"
     gene            87401..87610
                     /gene="yazB"
                     /locus_tag="BSU_00800"
                     /old_locus_tag="BSU00800"
     CDS             87634..88635
                     /gene="dusB"
                     /locus_tag="BSU_00810"
                     /old_locus_tag="BSU00810"
                     /EC_number="1.-.-.-"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11983710, 15698474,
                     26112661; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase B"
                     /protein_id="NP_387962.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00810"
                     /db_xref="EnsemblGenomes-Tr:CAB11857"
                     /db_xref="GOA:P37567"
                     /db_xref="InterPro:IPR001269"
                     /db_xref="InterPro:IPR004652"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR018517"
                     /db_xref="InterPro:IPR024036"
                     /db_xref="InterPro:IPR035587"
                     /db_xref="SubtiList:BG10143"
                     /db_xref="UniProtKB/Swiss-Prot:P37567"
                     /translation="MFKIGDIQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVS
                     DKAILYNNARTMGMLYIDEREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGC
                     PVPKITKCDAGAKWLLDPDKIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAV
                     ERAGGKAVALHGRTRVQMYEGTANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDET
                     GVDGVMIGRAALGNPWMIYRTVQYLETGKLKEEPQVREKMAVCKLHLDRLIDLKGENV
                     AVREMRKHAAWYLKGVKGNANVRNEINHCETREEFVQLLDAFTVEVEAKELQNAKVG*
                     "
     gene            87634..88635
                     /gene="dusB"
                     /locus_tag="BSU_00810"
                     /old_locus_tag="BSU00810"
     S_feature       complement(88050..89566)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_88050_89566_c"
                     /HighExp="LoTm, C30, S6, S8, S5, S7, S3, S4, C90, G135"
                     /AntisenseName="dusB"
                     /AntisenseCor="-0.60218706634778196"
                     /AntisenseRegPval="-27.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S41"
     S_feature       88636..88726
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_88636_88726"
                     /HighExp="H2O2, G180, G150, Paraq, G135, Oxctl, Diami,
                     C30, LBGexp, C90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.998, 0.998"
                     /TUlongSig="SigA, SigI, SigA, SigEF, SigA, SigA, SigA"
                     /TUlongPSig="0.621, 0.787, 1, 0.995, 1, 0.999, 1"
                     /label="S42"
     CDS             88727..90226
                     /gene="lysS"
                     /locus_tag="BSU_00820"
                     /old_locus_tag="BSU00820"
                     /EC_number="6.1.1.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14623972, 20649968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14623972,
                     20649968; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="lysyl-tRNA synthetase"
                     /protein_id="NP_387963.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00820"
                     /db_xref="EnsemblGenomes-Tr:CAB11858"
                     /db_xref="GOA:P37477"
                     /db_xref="InterPro:IPR002313"
                     /db_xref="InterPro:IPR004364"
                     /db_xref="InterPro:IPR004365"
                     /db_xref="InterPro:IPR006195"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR018149"
                     /db_xref="InterPro:IPR034762"
                     /db_xref="SubtiList:BG10144"
                     /db_xref="UniProtKB/Swiss-Prot:P37477"
                     /translation="MSQEEHNHEELNDQLQVRRDKMNQLRDNGIDPFGARFERTHQSQ
                     EVISAYQDLTKEELEEKAIEVTIAGRMMTKRGKGKAGFAHLQDLEGQIQIYVRKDSVG
                     DDQYEIFKSSDLGDLIGVTGKVFKTNVGELSVKATSFELLTKALRPLPDKYHGLKDVE
                     QRYRQRYLDLIVNPDSKHTFITRSKIIQAMRRYLDDHGYLEVETPTMHSIPGGASARP
                     FITHHNALDIPLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIEL
                     YEAYADYKDIMSLTENLVAHIAQEVLGTTTIQYGEEQIDLKPEWKRIHMVDAVKEATG
                     VDFWEEVTVEQAREYAKEHEVEIKDSMTVGHIINEFFEQKIEETLIQPTFIYGHPVEI
                     SPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQRERFEAQLKEREAGNDEAH
                     LMDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNAPSIRDVLLFPQMRQR*"
     gene            88727..90226
                     /gene="lysS"
                     /locus_tag="BSU_00820"
                     /old_locus_tag="BSU00820"
     promotor_-10    complement(89550..89568)
                     /Source="Nicolas_upshift_promotors"
                     /id="U77"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1081
                     /SigmaFactorBS="ttcttgggcgatatgagcgacaaggttttcagttaagCTCAT
                     GatatctttatagtccGCATATGCTTCATATAACTcaatcattgtaaattcagggtta
                     t"
                     /listShort="S41"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(89566)
                     /Source="Nicolas_upshifts"
                     /id="U77"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1081
                     /SigmaFactorBS="ttcttgggcgatatgagcgacaaggttttcagttaagCTCAT
                     GatatctttatagtccGCATATGCTTCATATAACTcaatcattgtaaattcagggtta
                     t"
                     /listShort="S41"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(89584..89589)
                     /Source="Nicolas_upshift_promotors"
                     /id="U77"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1081
                     /SigmaFactorBS="ttcttgggcgatatgagcgacaaggttttcagttaagCTCAT
                     GatatctttatagtccGCATATGCTTCATATAACTcaatcattgtaaattcagggtta
                     t"
                     /listShort="S41"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      90207
                     /Source="Nicolas_upshifts"
                     /id="D36"
                     /incds=0
                     /nref=104
                     /ntot=219
                     /MaxReadThrough="4.49559"
                     /MaxDrop="4.89484"
                     /score="4.33485487"
                     /energy="-18.1"
                     /TU="U76"
                     /idTUdmin="U74"
                     /TUdmin=3
                     /isTUend="TRUE"
     promotor_-35    90302..90309
                     /Source="Nicolas_upshift_promotors"
                     /id="U78"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2623
                     /SigmaFactorBS="gatgccgctctttttaaatcccttagtatttcttcaaaaaaa
                     ctATTGCACTattatttactaggTGGTATATTATTATTCGTTGccgctaaacaaggcg
                     a"
                     /listShort="S43, rrnJ-16S, rrnJ-23S, rrnJ-5S, trnJ-Val,
                     trnJ-Thr, trnJ-Lys, trnJ-Leu1, trnJ-Gly, trnJ-Leu2,
                     trnJ-Arg, trnJ-Pro"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       90318..90535
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_90318_90535"
                     /HighExp="LBGstat, H2O2, Oxctl, Diami, dia15, Paraq, MG
                     25, Heat, MG 15, UNK1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA"
                     /TUlongPSig="0.998, 0.998, 1, 1, 0.999, 1"
                     /label="S43"
     upshifts        90318
                     /Source="Nicolas_upshifts"
                     /id="U78"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2623
                     /SigmaFactorBS="gatgccgctctttttaaatcccttagtatttcttcaaaaaaa
                     ctATTGCACTattatttactaggTGGTATATTATTATTCGTTGccgctaaacaaggcg
                     a"
                     /listShort="S43, rrnJ-16S, rrnJ-23S, rrnJ-5S, trnJ-Val,
                     trnJ-Thr, trnJ-Lys, trnJ-Leu1, trnJ-Gly, trnJ-Leu2,
                     trnJ-Arg, trnJ-Pro"
                     /GFF_Attribute="listLong"
     promotor_-10    90323..90342
                     /Source="Nicolas_upshift_promotors"
                     /id="U78"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2623
                     /SigmaFactorBS="gatgccgctctttttaaatcccttagtatttcttcaaaaaaa
                     ctATTGCACTattatttactaggTGGTATATTATTATTCGTTGccgctaaacaaggcg
                     a"
                     /listShort="S43, rrnJ-16S, rrnJ-23S, rrnJ-5S, trnJ-Val,
                     trnJ-Thr, trnJ-Lys, trnJ-Leu1, trnJ-Gly, trnJ-Leu2,
                     trnJ-Arg, trnJ-Pro"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(90368)
                     /Source="Nicolas_upshifts"
                     /id="D37"
                     /incds=0
                     /nref=3
                     /ntot=51
                     /MaxReadThrough="3.16217"
                     /MaxDrop="5.0092"
                     /score="18.6635354"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U77"
                     /TUdmin="-2288"
                     /isTUend="FALSE"
     rRNA            90536..92089
                     /gene="rrnJ-16S"
                     /locus_tag="BSU_rRNA_6"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            90536..92089
                     /gene="rrnJ-16S"
                     /locus_tag="BSU_rRNA_6"
     rRNA            92254..95181
                     /gene="rrnJ-23S"
                     /locus_tag="BSU_rRNA_7"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            92254..95181
                     /gene="rrnJ-23S"
                     /locus_tag="BSU_rRNA_7"
     rRNA            95237..95354
                     /gene="rrnJ-5S"
                     /locus_tag="BSU_rRNA_8"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            95237..95354
                     /gene="rrnJ-5S"
                     /locus_tag="BSU_rRNA_8"
     tRNA            95375..95450
                     /gene="trnJ-Val"
                     /locus_tag="BSU_tRNA_12"
                     /product="tRNA-Val"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Val(UAC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            95375..95450
                     /gene="trnJ-Val"
                     /locus_tag="BSU_tRNA_12"
     tRNA            95455..95530
                     /gene="trnJ-Thr"
                     /locus_tag="BSU_tRNA_13"
                     /product="tRNA-Thr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Thr(UGU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            95455..95530
                     /gene="trnJ-Thr"
                     /locus_tag="BSU_tRNA_13"
     tRNA            95567..95642
                     /gene="trnJ-Lys"
                     /locus_tag="BSU_tRNA_14"
                     /product="tRNA-Lys"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Lys(UUU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            95567..95642
                     /gene="trnJ-Lys"
                     /locus_tag="BSU_tRNA_14"
     tRNA            95649..95731
                     /gene="trnJ-Leu1"
                     /locus_tag="BSU_tRNA_15"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Leu(UAG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            95649..95731
                     /gene="trnJ-Leu1"
                     /locus_tag="BSU_tRNA_15"
     tRNA            95772..95846
                     /gene="trnJ-Gly"
                     /locus_tag="BSU_tRNA_16"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gly(GCC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            95772..95846
                     /gene="trnJ-Gly"
                     /locus_tag="BSU_tRNA_16"
     tRNA            95861..95946
                     /gene="trnJ-Leu2"
                     /locus_tag="BSU_tRNA_17"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Leu(UAA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            95861..95946
                     /gene="trnJ-Leu2"
                     /locus_tag="BSU_tRNA_17"
     tRNA            95956..96032
                     /gene="trnJ-Arg"
                     /locus_tag="BSU_tRNA_18"
                     /product="tRNA-Arg"
                     /inference="profile:tRNAscan:1.23"
                     /note="arginine transfer RNA(ACG); Evidence 2a: Function
                     from experimental evidences in other organisms; PubMedId:
                     27749819; Product type n : RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            95956..96032
                     /gene="trnJ-Arg"
                     /locus_tag="BSU_tRNA_18"
     tRNA            96060..96136
                     /gene="trnJ-Pro"
                     /locus_tag="BSU_tRNA_19"
                     /product="tRNA-Pro"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Pro(UGG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            96060..96136
                     /gene="trnJ-Pro"
                     /locus_tag="BSU_tRNA_19"
     tRNA            96146..96221
                     /gene="trnJ-Ala"
                     /locus_tag="BSU_tRNA_20"
                     /product="tRNA-Ala"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ala(UGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            96146..96221
                     /gene="trnJ-Ala"
                     /locus_tag="BSU_tRNA_20"
     rRNA            96392..97945
                     /gene="rrnW-16S"
                     /locus_tag="BSU_rRNA_9"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            96392..97945
                     /gene="rrnW-16S"
                     /locus_tag="BSU_rRNA_9"
     rRNA            98110..101037
                     /gene="rrnW-23S"
                     /locus_tag="BSU_rRNA_10"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            98110..101037
                     /gene="rrnW-23S"
                     /locus_tag="BSU_rRNA_10"
     rRNA            101093..101211
                     /gene="rrnW-5S"
                     /locus_tag="BSU_rRNA_11"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            101093..101211
                     /gene="rrnW-5S"
                     /locus_tag="BSU_rRNA_11"
     S_feature       101212..101289
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_101212_101289"
                     /HighExp="G135, G180, G150, Cold, Paraq, Oxctl, H2O2, C30,
                     BMM, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S44"
     promotor_-35    101259..101262
                     /Source="Nicolas_upshift_promotors"
                     /id="U79"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.37962037962038"
                     /psig="0.947052947052947"
                     /xcortree=1441
                     /SigmaFactorBS="gctgggttttttgtattttggtttattgGTATcataaaattc
                     cacttAACTGTATAATATAATAACTttataccgaattttaaatcagcaatcaggtttt
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC"
                     /listLong="radA, disA, S45, yacL, ispD, ispF, gltX, S46,
                     cysE, cysS, mrnC, rlmB, yacP, sigH, S47, rpmGB, secE, S48,
                     nusG, S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB, S51,
                     rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54, tufA,
                     ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC,
                     rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF,
                     rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ,
                     rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA,
                     NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    101278..101297
                     /Source="Nicolas_upshift_promotors"
                     /id="U79"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.37962037962038"
                     /psig="0.947052947052947"
                     /xcortree=1441
                     /SigmaFactorBS="gctgggttttttgtattttggtttattgGTATcataaaattc
                     cacttAACTGTATAATATAATAACTttataccgaattttaaatcagcaatcaggtttt
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC"
                     /listLong="radA, disA, S45, yacL, ispD, ispF, gltX, S46,
                     cysE, cysS, mrnC, rlmB, yacP, sigH, S47, rpmGB, secE, S48,
                     nusG, S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB, S51,
                     rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54, tufA,
                     ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC,
                     rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF,
                     rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ,
                     rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA,
                     NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        101291
                     /Source="Nicolas_upshifts"
                     /id="U79"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.37962037962038"
                     /psig="0.947052947052947"
                     /xcortree=1441
                     /SigmaFactorBS="gctgggttttttgtattttggtttattgGTATcataaaattc
                     cacttAACTGTATAATATAATAACTttataccgaattttaaatcagcaatcaggtttt
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC"
                     /listLong="radA, disA, S45, yacL, ispD, ispF, gltX, S46,
                     cysE, cysS, mrnC, rlmB, yacP, sigH, S47, rpmGB, secE, S48,
                     nusG, S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB, S51,
                     rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54, tufA,
                     ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC,
                     rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF,
                     rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ,
                     rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA,
                     NA, rplM, rpsI, S59, ybaJ"
     promotor_-35    101325..101331
                     /Source="Nicolas_upshift_promotors"
                     /id="U80"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=150
                     /SigmaFactorBS="ctttataccgaattttaaatcagcaatcaGGTTTTGtggacc
                     gggaaaaTGGAAATAATGAAGGATAGAgcgagaaagttgaaaattctcgagaaacggc
                     t"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC"
                     /label="promotor_-35"
     promotor_-10    101345..101364
                     /Source="Nicolas_upshift_promotors"
                     /id="U80"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=150
                     /SigmaFactorBS="ctttataccgaattttaaatcagcaatcaGGTTTTGtggacc
                     gggaaaaTGGAAATAATGAAGGATAGAgcgagaaagttgaaaattctcgagaaacggc
                     t"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC"
                     /label="promotor_-10"
     upshifts        101356
                     /Source="Nicolas_upshifts"
                     /id="U80"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=150
                     /SigmaFactorBS="ctttataccgaattttaaatcagcaatcaGGTTTTGtggacc
                     gggaaaaTGGAAATAATGAAGGATAGAgcgagaaagttgaaaattctcgagaaacggc
                     t"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC"
     promotor_-35    101371..101378
                     /Source="Nicolas_upshift_promotors"
                     /id="U81"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig=1
                     /xcortree=2024
                     /SigmaFactorBS="atggaaataatgaaggatagagcgagaAAGTTGAAaattctc
                     gagaaaCGGCTTATAGTAAGATTAAAgtcaaatatagtcaaagtcagtaaaggagggg
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC, S55, rpsJ, rplC, rplD, rplW,
                     rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplNA, rplX,
                     rplE, rpsNA, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY,
                     adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK, S56, rpoA, rplQ,
                     S57, ybxA, ybaE, ybaF, truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    101392..101411
                     /Source="Nicolas_upshift_promotors"
                     /id="U81"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig=1
                     /xcortree=2024
                     /SigmaFactorBS="atggaaataatgaaggatagagcgagaAAGTTGAAaattctc
                     gagaaaCGGCTTATAGTAAGATTAAAgtcaaatatagtcaaagtcagtaaaggagggg
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC, S55, rpsJ, rplC, rplD, rplW,
                     rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplNA, rplX,
                     rplE, rpsNA, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY,
                     adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK, S56, rpoA, rplQ,
                     S57, ybxA, ybaE, ybaF, truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        101404
                     /Source="Nicolas_upshifts"
                     /id="U81"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig=1
                     /xcortree=2024
                     /SigmaFactorBS="atggaaataatgaaggatagagcgagaAAGTTGAAaattctc
                     gagaaaCGGCTTATAGTAAGATTAAAgtcaaatatagtcaaagtcagtaaaggagggg
                     g"
                     /listShort="ctsR, mcsA, mcsB, clpC, radA, disA, S45, yacL,
                     ispD, ispF"
                     /listLong="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG, S49, rplK, S50, rplA, NA,
                     rplJ, rplL, ybxB, S51, rpoB, rpoC, S52, rplGB, S53, rpsL,
                     rpsG, fusA, S54, tufA, ybaC, S55, rpsJ, rplC, rplD, rplW,
                     rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ, rplNA, rplX,
                     rplE, rpsNA, rpsH, rplF, rplR, rpsE, rpmD, rplO, secY,
                     adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK, S56, rpoA, rplQ,
                     S57, ybxA, ybaE, ybaF, truA, NA, rplM, rpsI, S59, ybaJ"
     CDS             101449..101913
                     /gene="ctsR"
                     /locus_tag="BSU_00830"
                     /old_locus_tag="BSU00830"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:2120829, 9852015, 11069659, 12618461, 16163393,
                     20852588, 24465625, 27388279"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2120829, 9852015,
                     11069659, 12618461, 16163393, 20852588, 24465625,
                     27388279; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of class III stress
                     genes"
                     /protein_id="NP_387964.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00830"
                     /db_xref="EnsemblGenomes-Tr:CAB11859"
                     /db_xref="GOA:P37568"
                     /db_xref="InterPro:IPR008463"
                     /db_xref="SubtiList:BG10145"
                     /db_xref="UniProtKB/Swiss-Prot:P37568"
                     /translation="MGHNISDIIEQYLKRVLDQNGKEILEIKRSEIADKFQCVPSQIN
                     YVINTRFTSERGYIVESKRGGGGYIRIIKIKMNNEVVLINNIISQINTHLSQAASDDI
                     ILRLLEDKVISEREAKMMVSVMDRSVLHIDLPERDELRARMMKAMLTSLKLK*"
     gene            101449..101913
                     /gene="ctsR"
                     /locus_tag="BSU_00830"
                     /old_locus_tag="BSU00830"
     misc_feature    complement(101560..101564)
                     /Source="Nicolas_upshift_promotors"
                     /id="U82"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.811188811188811"
                     /psig="0.0769230769230769"
                     /xcortree=50
                     /SigmaFactorBS="caacaatatatcctctttcgcttgtaaatctggtgttgatga
                     cataatttatttgggaaggaACGCAttgaaatttatctgcaatttcacttcgtttaat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(101566)
                     /Source="Nicolas_upshifts"
                     /id="U82"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.811188811188811"
                     /psig="0.0769230769230769"
                     /xcortree=50
                     /SigmaFactorBS="caacaatatatcctctttcgcttgtaaatctggtgttgatga
                     cataatttatttgggaaggaACGCAttgaaatttatctgcaatttcacttcgtttaat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             101927..102484
                     /gene="mcsA"
                     /locus_tag="BSU_00840"
                     /old_locus_tag="BSU00840"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16163393, 19189946, 24947607"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16163393, 19189946,
                     24947607; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="activator of protein kinase McsB"
                     /protein_id="NP_387965.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00840"
                     /db_xref="EnsemblGenomes-Tr:CAB11860"
                     /db_xref="GOA:P37569"
                     /db_xref="InterPro:IPR001943"
                     /db_xref="InterPro:IPR025542"
                     /db_xref="InterPro:IPR029037"
                     /db_xref="InterPro:IPR036876"
                     /db_xref="SubtiList:BG10146"
                     /db_xref="UniProtKB/Swiss-Prot:P37569"
                     /translation="MICQECHERPATFHFTKVVNGEKIEVHICEQCAKENSDSYGISA
                     NQGFSIHNLLSGLLNMDSSFQNAGTQMFSHSEQISACPKCGMTFQQFRKIGRFGCSEC
                     YKTFHSNITPILRKVHSGNTVHAGKIPKRIGGNLHVRRQIDMLKKELESLIHQEEFEN
                     AAHVRDQIRLLEQSLKSTDSEEEQE*"
     gene            101927..102484
                     /gene="mcsA"
                     /locus_tag="BSU_00840"
                     /old_locus_tag="BSU00840"
     CDS             102484..103575
                     /gene="mcsB"
                     /locus_tag="BSU_00850"
                     /old_locus_tag="BSU00850"
                     /EC_number="2.7.3.3"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16163393, 17380125, 19189946, 21622759, 25610436,
                     27749819"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16163393, 17380125,
                     19189946, 21622759, 25610436, 27749819; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="protein arginine kinase"
                     /protein_id="NP_387966.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00850"
                     /db_xref="EnsemblGenomes-Tr:CAB11861"
                     /db_xref="GOA:P37570"
                     /db_xref="InterPro:IPR000749"
                     /db_xref="InterPro:IPR014746"
                     /db_xref="InterPro:IPR022414"
                     /db_xref="InterPro:IPR022415"
                     /db_xref="InterPro:IPR023660"
                     /db_xref="SubtiList:BG10147"
                     /db_xref="UniProtKB/Swiss-Prot:P37570"
                     /translation="MSLKHFIQDALSSWMKQKGPESDIVLSSRIRLARNFEHIRFPTR
                     YSNEEASSIIQQFEDQFSEQEIPGIGKFVLIRMNDAQPLEKRVLVEKHLISPNLTESP
                     FGGCLLSENEEVSVMLNEEDHIRIQCLFPGFQLLEAMKAANQVDDWIEEKVDYAFNEQ
                     RGYLTSCPTNVGTGLRASVMMHLPALVLTRQINRIIPAINQLGLVVRGIYGEGSEAVG
                     NIFQISNQITLGKSEQDIVEDLNSVAAQLIEQERSAREAIYQTSKIELEDRVYRSYGV
                     LSNCRMIESKETAKCLSDVRLGIDLGIIKGLSSNILNELMILTQPGFLQQYSGGALRP
                     NERDIRRAALIRERLHLEMNGKRQEDESI*"
     gene            102484..103575
                     /gene="mcsB"
                     /locus_tag="BSU_00850"
                     /old_locus_tag="BSU00850"
     CDS             103572..106004
                     /gene="clpC"
                     /locus_tag="BSU_00860"
                     /old_locus_tag="BSU00860"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354604, 15529410, 16525504, 26735940, 27749819"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354604, 15529410,
                     16525504, 26735940, 27749819; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="class III stress response-related ATPase, AAA+
                     superfamily"
                     /protein_id="NP_387967.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00860"
                     /db_xref="EnsemblGenomes-Tr:CAB11862"
                     /db_xref="GOA:P37571"
                     /db_xref="InterPro:IPR001270"
                     /db_xref="InterPro:IPR001943"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR003959"
                     /db_xref="InterPro:IPR004176"
                     /db_xref="InterPro:IPR018368"
                     /db_xref="InterPro:IPR019489"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR028299"
                     /db_xref="InterPro:IPR036628"
                     /db_xref="PDB:2K77"
                     /db_xref="PDB:2Y1Q"
                     /db_xref="PDB:2Y1R"
                     /db_xref="PDB:3J3R"
                     /db_xref="PDB:3J3S"
                     /db_xref="PDB:3J3T"
                     /db_xref="PDB:3J3U"
                     /db_xref="PDB:3PXG"
                     /db_xref="PDB:3PXI"
                     /db_xref="PDB:5HBN"
                     /db_xref="SubtiList:BG10148"
                     /db_xref="UniProtKB/Swiss-Prot:P37571"
                     /translation="MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEG
                     IAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSY
                     VGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANT
                     PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA
                     EGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIIL
                     FIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF
                     QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI
                     DLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLR
                     EQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHS
                     RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE
                     ESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHP
                     DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNH
                     KDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLS
                     IELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVED
                     GEFVVKTTAKTN*"
     gene            103572..106004
                     /gene="clpC"
                     /locus_tag="BSU_00860"
                     /old_locus_tag="BSU00860"
     downshifts      105999
                     /Source="Nicolas_upshifts"
                     /id="D38"
                     /incds=0
                     /nref=57
                     /ntot=245
                     /MaxReadThrough="6.69446"
                     /MaxDrop="4.4703"
                     /score="-8.32149463"
                     /energy="-11.7"
                     /TU="U80,U81"
                     /idTUdmin="U79"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             106096..107472
                     /gene="radA"
                     /locus_tag="BSU_00870"
                     /old_locus_tag="BSU00870"
                     /EC_number="2.1.1.63"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 10931349, 11810266,
                     15317759, 25616256; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein; 6-O-methylguanine-DNA
                     methyltransferase"
                     /protein_id="NP_387968.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00870"
                     /db_xref="EnsemblGenomes-Tr:CAB11863"
                     /db_xref="GOA:P37572"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR004504"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR020588"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10149"
                     /db_xref="UniProtKB/Swiss-Prot:P37572"
                     /translation="MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPAN
                     RRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGI
                     GKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
                     SAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHV
                     TKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTE
                     VLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNR
                     VSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADC
                     FIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAE
                     ALRTSLGG*"
     gene            106096..107472
                     /gene="radA"
                     /locus_tag="BSU_00870"
                     /old_locus_tag="BSU00870"
     promotor_-35    106551..106560
                     /Source="Nicolas_upshift_promotors"
                     /id="U83"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1648
                     /SigmaFactorBS="ctcggcattaataatccgtcactgcatgttttatcTGAAACC
                     GATatggagtatattTCGTCTGCTATACAAGagatgaatccatcgtttgtcgttgttg
                     a"
                     /listShort="disA, S45, yacL, ispD, ispF, gltX, S46, cysE,
                     cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC, S55, rpsJ,
                     rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC,
                     rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF, rplR, rpsE,
                     rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK,
                     S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA, NA, rplM,
                     rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    106573..106588
                     /Source="Nicolas_upshift_promotors"
                     /id="U83"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1648
                     /SigmaFactorBS="ctcggcattaataatccgtcactgcatgttttatcTGAAACC
                     GATatggagtatattTCGTCTGCTATACAAGagatgaatccatcgtttgtcgttgttg
                     a"
                     /listShort="disA, S45, yacL, ispD, ispF, gltX, S46, cysE,
                     cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC, S55, rpsJ,
                     rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC,
                     rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF, rplR, rpsE,
                     rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK,
                     S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA, NA, rplM,
                     rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        106576
                     /Source="Nicolas_upshifts"
                     /id="U83"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1648
                     /SigmaFactorBS="ctcggcattaataatccgtcactgcatgttttatcTGAAACC
                     GATatggagtatattTCGTCTGCTATACAAGagatgaatccatcgtttgtcgttgttg
                     a"
                     /listShort="disA, S45, yacL, ispD, ispF, gltX, S46, cysE,
                     cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC, S55, rpsJ,
                     rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC,
                     rpsQ, rplNA, rplX, rplE, rpsNA, rpsH, rplF, rplR, rpsE,
                     rpmD, rplO, secY, adk, mapA, ybzG, infA, rpmJ, rpsM, rpsK,
                     S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF, truA, NA, rplM,
                     rpsI, S59, ybaJ"
     CDS             107476..108558
                     /gene="disA"
                     /locus_tag="BSU_00880"
                     /old_locus_tag="BSU00880"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16713562, 21566650, 24939848, 25616256, 27074767,
                     27150552, 28511132, 28961460"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16713562, 21566650,
                     24939848, 25616256, 27074767, 27150552, 28511132,
                     28961460; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase; DNA integrity scanning
                     protein; cell cycle checkpoint DNA scanning protein"
                     /protein_id="NP_387969.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00880"
                     /db_xref="EnsemblGenomes-Tr:CAB11864"
                     /db_xref="GOA:P37573"
                     /db_xref="InterPro:IPR003390"
                     /db_xref="InterPro:IPR010994"
                     /db_xref="InterPro:IPR018906"
                     /db_xref="InterPro:IPR023763"
                     /db_xref="InterPro:IPR036888"
                     /db_xref="SubtiList:BG10150"
                     /db_xref="UniProtKB/Swiss-Prot:P37573"
                     /translation="MEKEKKGAKHELDLSSILQFVAPGTPLRAGMENVLRANTGGLIV
                     VGYNDKVKEVVDGGFHINTAFSPAHLYELAKMDGAIILSDSGQKILYANTQLMPDATI
                     SSSETGMRHRTAERVAKQTGCLVIAISERRNVITLYQENMKYTLKDIGFILTKANQAI
                     QTLEKYKTILDKTINALNALEFEELVTFSDVLSVMHRYEMVLRIKNEINMYIKELGTE
                     GHLIKLQVIELITDMEEEAALFIKDYVKEKIKDPFVLLKELQDMSSYDLLDDSIVYKL
                     LGYPASTNLDDYVLPRGYRLLNKIPRLPMPIVENVVEAFGVLPRIIEASAEELDEVEG
                     IGEVRAQKIKKGLKRLQEKHYLDRQL*"
     gene            107476..108558
                     /gene="disA"
                     /locus_tag="BSU_00880"
                     /old_locus_tag="BSU00880"
     S_feature       108559..108673
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_108559_108673"
                     /HighExp="Etha, Salt, Heat, dia15, Diami, M9-stat, B60,
                     T-0.40H, T-1.10H, HiTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY, SigA, SigB"
                     /TUshortPSig="1, 1, 1"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.947"
                     /label="S45"
     CDS             108674..109774
                     /gene="yacL"
                     /locus_tag="BSU_00890"
                     /old_locus_tag="BSU00890"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26999498; Product type
                     m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein possibly involved in
                     RNA binding"
                     /protein_id="NP_387970.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00890"
                     /db_xref="EnsemblGenomes-Tr:CAB11865"
                     /db_xref="GOA:Q06754"
                     /db_xref="InterPro:IPR002716"
                     /db_xref="InterPro:IPR002792"
                     /db_xref="InterPro:IPR029060"
                     /db_xref="SubtiList:BG10151"
                     /db_xref="UniProtKB/Swiss-Prot:Q06754"
                     /translation="MLKRIVQAFFIIFGGVVGIFLIPELFVLLNIQDIPLITNAYTSA
                     AIGAIIFFLISIWGTEYVVNWVKWIEDSLLKAPVPDLLFGSLGLVFGLIIAYLIVNVI
                     PLDNIPYRIFSTIIPVFLAFFLGYLGFQVGFKKKDELISLFSISARMQKKKGTADEEH
                     EVQDKKLKILDTSVIIDGRIADICQTGFLEGVIVIPQFVLEELQHIADSSDVLKRNRG
                     RRGLDILNRIQKELDIEVEIYEGDFEDIQEVDSKLVKLAKLTSGVVVTNDFNLNKVCE
                     LQKVAVLNINDLANAVKPVVLPGEEMNVQVIKDGKEHNQGVAYLDDGTMIVVEEGRNY
                     IGKHIDVLVTSVLQTAAGRMIFAKPKLLEKAL*"
     gene            108674..109774
                     /gene="yacL"
                     /locus_tag="BSU_00890"
                     /old_locus_tag="BSU00890"
     downshifts      complement(109596)
                     /Source="Nicolas_upshifts"
                     /id="D39"
                     /incds=1
                     /nref=1
                     /ntot=103
                     /MaxReadThrough="0.39171"
                     /MaxDrop="2.87304"
                     /score="-9.71423487"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U82"
                     /TUdmin="-8228"
                     /isTUend="FALSE"
     CDS             109789..110487
                     /gene="ispD"
                     /locus_tag="BSU_00900"
                     /old_locus_tag="BSU00900"
                     /EC_number="2.7.7.60"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 15044829, 15379557, 16533036, 17081012,
                     17458547, 23840410, 27821871"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 15044829,
                     15379557, 16533036, 17081012, 17458547, 23840410,
                     27821871; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase, nonmevalonate isoprenoid pathway"
                     /protein_id="NP_387971.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00900"
                     /db_xref="EnsemblGenomes-Tr:CAB11866"
                     /db_xref="GOA:Q06755"
                     /db_xref="InterPro:IPR001228"
                     /db_xref="InterPro:IPR018294"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="InterPro:IPR034683"
                     /db_xref="PDB:5DDT"
                     /db_xref="PDB:5DDV"
                     /db_xref="PDB:5HS2"
                     /db_xref="SubtiList:BG10152"
                     /db_xref="UniProtKB/Swiss-Prot:Q06755"
                     /translation="MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHR
                     QCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVKQEKIVLV
                     HDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDTIKRVQDLQVSETIERSSLWAVQT
                     PQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTS
                     AEAIMESESGNKHV*"
     gene            109789..110487
                     /gene="ispD"
                     /locus_tag="BSU_00900"
                     /old_locus_tag="BSU00900"
     CDS             110480..110956
                     /gene="ispF"
                     /locus_tag="BSU_00910"
                     /old_locus_tag="BSU00910"
                     /EC_number="4.6.1.12"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9622350, 11997478, 12270818, 12682299, 17458547,
                     23840410"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9622350, 11997478,
                     12270818, 12682299, 17458547, 23840410; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol-2,4-cyclodiphosphate
                     synthase"
                     /protein_id="NP_387972.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00910"
                     /db_xref="EnsemblGenomes-Tr:CAB11867"
                     /db_xref="GOA:Q06756"
                     /db_xref="InterPro:IPR003526"
                     /db_xref="InterPro:IPR020555"
                     /db_xref="InterPro:IPR036571"
                     /db_xref="PDB:5IWX"
                     /db_xref="PDB:5IWY"
                     /db_xref="SubtiList:BG10153"
                     /db_xref="UniProtKB/Swiss-Prot:Q06756"
                     /translation="MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHT
                     VADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQ
                     KPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG*"
     gene            110480..110956
                     /gene="ispF"
                     /locus_tag="BSU_00910"
                     /old_locus_tag="BSU00910"
     promotor_-35    110960..110967
                     /Source="Nicolas_upshift_promotors"
                     /id="U84"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2679
                     /SigmaFactorBS="cagtactgatacaaaaaggctaacttGTTTTGATgccgggtc
                     tatttGGTGGTAGAATAGATTCATAcatttttgcctgaggccatacatgacatgaaag
                     g"
                     /listShort="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    110981..111000
                     /Source="Nicolas_upshift_promotors"
                     /id="U84"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2679
                     /SigmaFactorBS="cagtactgatacaaaaaggctaacttGTTTTGATgccgggtc
                     tatttGGTGGTAGAATAGATTCATAcatttttgcctgaggccatacatgacatgaaag
                     g"
                     /listShort="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        110994
                     /Source="Nicolas_upshifts"
                     /id="U84"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2679
                     /SigmaFactorBS="cagtactgatacaaaaaggctaacttGTTTTGATgccgggtc
                     tatttGGTGGTAGAATAGATTCATAcatttttgcctgaggccatacatgacatgaaag
                     g"
                     /listShort="gltX, S46, cysE, cysS, mrnC, rlmB, yacP, sigH,
                     S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
     CDS             111047..112498
                     /gene="gltX"
                     /locus_tag="BSU_00920"
                     /old_locus_tag="BSU00920"
                     /EC_number="6.1.1.24"
                     /EC_number="6.1.1.17"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2120226, 3079749, 9342321, 10024179, 10546897,
                     12682299, 14741355"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2120226, 3079749,
                     9342321, 10024179, 10546897, 12682299, 14741355; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA synthetase"
                     /protein_id="NP_387973.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00920"
                     /db_xref="EnsemblGenomes-Tr:CAB11868"
                     /db_xref="GOA:P22250"
                     /db_xref="InterPro:IPR000924"
                     /db_xref="InterPro:IPR001412"
                     /db_xref="InterPro:IPR004527"
                     /db_xref="InterPro:IPR008925"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR020058"
                     /db_xref="InterPro:IPR020061"
                     /db_xref="InterPro:IPR020751"
                     /db_xref="InterPro:IPR020752"
                     /db_xref="InterPro:IPR033910"
                     /db_xref="SubtiList:BG10154"
                     /db_xref="UniProtKB/Swiss-Prot:P22250"
                     /translation="MGNEVRVRYAPSPTGHLHIGNARTALFNYLFARNQGGKFIIRVE
                     DTDKKRNIEGGEQSQLNYLKWLGIDWDESVDVGGEYGPYRQSERNDIYKVYYEELLEK
                     GLAYKCYCTEEELEKEREEQIARGEMPRYSGKHRDLTQEEQEKFIAEGRKPSIRFRVP
                     EGKVIAFNDIVKGEISFESDGIGDFVIVKKDGTPTYNFAVAIDDYLMKMTHVLRGEDH
                     ISNTPKQIMIYQAFGWDIPQFGHMTLIVNESRKKLSKRDESIIQFIEQYKELGYLPEA
                     LFNFIGLLGWSPVGEEELFTKEQFIEIFDVNRLSKSPALFDMHKLKWVNNQYVKKLDL
                     DQVVELTLPHLQKAGKVGTELSAEEQEWVRKLISLYHEQLSYGAEIVELTDLFFTDEI
                     EYNQEAKAVLEEEQVPEVLSTFAAKLEELEEFTPDNIKASIKAVQKETGHKGKKLFMP
                     IRVAVTGQTHGPELPQSIELIGKETAIQRLKNI*"
     gene            111047..112498
                     /gene="gltX"
                     /locus_tag="BSU_00920"
                     /old_locus_tag="BSU00920"
     promotor_-35    111976..111985
                     /Source="Nicolas_upshift_promotors"
                     /id="U85"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1307
                     /SigmaFactorBS="agcagtttattgaaatttttgatgtaaatcgtttatcTAAAT
                     CACCAgctttgtttgataTGCATAAGCTAAAATGGGTTaacaaccaatatgtgaagaa
                     g"
                     /listShort="S46, cysE, cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA"
                     /label="promotor_-35"
     promotor_-10    111999..112018
                     /Source="Nicolas_upshift_promotors"
                     /id="U85"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1307
                     /SigmaFactorBS="agcagtttattgaaatttttgatgtaaatcgtttatcTAAAT
                     CACCAgctttgtttgataTGCATAAGCTAAAATGGGTTaacaaccaatatgtgaagaa
                     g"
                     /listShort="S46, cysE, cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA"
                     /label="promotor_-10"
     upshifts        111999
                     /Source="Nicolas_upshifts"
                     /id="U85"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1307
                     /SigmaFactorBS="agcagtttattgaaatttttgatgtaaatcgtttatcTAAAT
                     CACCAgctttgtttgataTGCATAAGCTAAAATGGGTTaacaaccaatatgtgaagaa
                     g"
                     /listShort="S46, cysE, cysS, mrnC, rlmB, yacP"
                     /listLong="sigH, S47, rpmGB, secE, S48, nusG, S49, rplK,
                     S50, rplA, NA, rplJ, rplL, ybxB, S51, rpoB, rpoC, S52,
                     rplGB, S53, rpsL, rpsG, fusA, S54, tufA"
     S_feature       112499..112799
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_112499_112799"
                     /HighExp="S6, S8, S7, Diami, C90, LBGexp, G135, H2O2,
                     dia5, HiTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.17844199999999999"
                     /TUshortSig="SigK, SigA, SigWXY"
                     /TUshortPSig="1, 0.999, 1"
                     /TUlongSig="SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.947"
                     /label="S46"
     CDS             112800..113453
                     /gene="cysE"
                     /locus_tag="BSU_00930"
                     /old_locus_tag="BSU00930"
                     /EC_number="2.3.1.30"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:7510287, 10737181, 10939241, 17056751, 18974048,
                     25731080"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7510287, 10737181,
                     10939241, 17056751, 18974048, 25731080; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="NP_387974.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00930"
                     /db_xref="EnsemblGenomes-Tr:CAB11869"
                     /db_xref="GOA:Q06750"
                     /db_xref="InterPro:IPR001451"
                     /db_xref="InterPro:IPR005881"
                     /db_xref="InterPro:IPR010493"
                     /db_xref="InterPro:IPR011004"
                     /db_xref="InterPro:IPR018357"
                     /db_xref="SubtiList:BG10155"
                     /db_xref="UniProtKB/Swiss-Prot:Q06750"
                     /translation="MFFRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHA
                     LYKRKFYFLARLISQVSRFFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVF
                     QGVTLGGTGKEKGKRHPTIKDDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFST
                     VVGIPGRVVVQNGKKVRRDLNHQDLPDPVADRFKSLEQQILELKAELEDRKERINQK*
                     "
     gene            112800..113453
                     /gene="cysE"
                     /locus_tag="BSU_00930"
                     /old_locus_tag="BSU00930"
     CDS             113450..114850
                     /gene="cysS"
                     /locus_tag="BSU_00940"
                     /old_locus_tag="BSU00940"
                     /EC_number="6.1.1.16"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10024179, 10546897, 10931887, 12682299, 29079736"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10024179, 10546897,
                     10931887, 12682299, 29079736; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="dual cysteinyl-tRNA synthetase; cysteine
                     persulfide synthase"
                     /protein_id="NP_387975.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00940"
                     /db_xref="EnsemblGenomes-Tr:CAB11870"
                     /db_xref="GOA:Q06752"
                     /db_xref="InterPro:IPR009080"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR015273"
                     /db_xref="InterPro:IPR015803"
                     /db_xref="InterPro:IPR024909"
                     /db_xref="InterPro:IPR032678"
                     /db_xref="SubtiList:BG10156"
                     /db_xref="UniProtKB/Swiss-Prot:Q06752"
                     /translation="MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARP
                     AIVYDTVRNYLEYKGYDVQYVSNFTDVDDKLIKAANELGEDVPTISERFIKAYFEDVG
                     ALGCRKADLHPRVMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSI
                     DELRSGARIRVGEKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLG
                     DQIDIHAGGQDLTFPHHENEIAQSEALTGKTFAKYWLHNGYINIDNEKMSKSLGNFVL
                     VHDIIKQHDPQLLRFFMLSVHYRHPINYSEELLENTKSAFSRLKTAYSNLQHRLNSST
                     NLTEDDDQWLEKVEEHRKAFEEEMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVI
                     TAFIEMFDRIVSVLGFSLGEQELLDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMN
                     IILEDTAQGTRWKRGE*"
     gene            113450..114850
                     /gene="cysS"
                     /locus_tag="BSU_00940"
                     /old_locus_tag="BSU00940"
     CDS             114854..115285
                     /gene="mrnC"
                     /locus_tag="BSU_00950"
                     /old_locus_tag="BSU00950"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16014871, 25634891, 27924926"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16014871, 25634891,
                     27924926; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease for 23S RNA maturation, mini-RNase
                     III"
                     /protein_id="NP_387976.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00950"
                     /db_xref="EnsemblGenomes-Tr:CAB11871"
                     /db_xref="GOA:O31418"
                     /db_xref="InterPro:IPR000999"
                     /db_xref="InterPro:IPR008226"
                     /db_xref="InterPro:IPR036389"
                     /db_xref="PDB:4OUN"
                     /db_xref="SubtiList:BG12702"
                     /db_xref="UniProtKB/Swiss-Prot:O31418"
                     /translation="MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPND
                     LHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYS
                     TAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT*"
     gene            114854..115285
                     /gene="mrnC"
                     /locus_tag="BSU_00950"
                     /old_locus_tag="BSU00950"
     CDS             115269..116018
                     /gene="rlmB"
                     /locus_tag="BSU_00960"
                     /old_locus_tag="BSU00960"
                     /EC_number="2.1.1.185"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11698387, 12377117,
                     16014871; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (Gm2251)-methyltransferase"
                     /protein_id="NP_387977.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00960"
                     /db_xref="EnsemblGenomes-Tr:CAB11872"
                     /db_xref="GOA:Q06753"
                     /db_xref="InterPro:IPR001537"
                     /db_xref="InterPro:IPR004441"
                     /db_xref="InterPro:IPR013123"
                     /db_xref="InterPro:IPR029026"
                     /db_xref="InterPro:IPR029028"
                     /db_xref="InterPro:IPR029064"
                     /db_xref="SubtiList:BG10157"
                     /db_xref="UniProtKB/Swiss-Prot:Q06753"
                     /translation="MSQQHDYVIGKNAVIETLKSDRKLYKLWMAENTVKGQAQQVIEL
                     AKKQGITIQYVPRKKLDQMVTGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLIL
                     DELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA
                     RTLEEMKERGIWVVGTDASAREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKL
                     PMAGKVTSLNASVAAGLLMYEVYRKRNPVGE*"
     gene            115269..116018
                     /gene="rlmB"
                     /locus_tag="BSU_00960"
                     /old_locus_tag="BSU00960"
     CDS             116025..116537
                     /gene="raeA"
                     /locus_tag="BSU_00970"
                     /old_locus_tag="BSU00970"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:17114934, 23355615, 28363943"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17114934, 23355615,
                     28363943; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-dependent mRNA endonuclease"
                     /protein_id="NP_387978.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00970"
                     /db_xref="EnsemblGenomes-Tr:CAB11873"
                     /db_xref="InterPro:IPR010298"
                     /db_xref="PDB:5MQ8"
                     /db_xref="PDB:5MQ9"
                     /db_xref="SubtiList:BG10158"
                     /db_xref="UniProtKB/Swiss-Prot:P37574"
                     /translation="MDILLVDGYNMIGAWPQLKDLKANSFEEARDVLIQKMAEYQSYT
                     GNRVIVVFDAHLVKGLEKKQTNHRVEVIFTKENETADERIEKLAQALNNIATQIHVAT
                     SDYTEQWAIFGQGALRKSARELLREVETIERRIERRVRKITSEKPAGKIALSEEVLKT
                     FEKWRRGDLD*"
     gene            116025..116537
                     /gene="raeA"
                     /locus_tag="BSU_00970"
                     /old_locus_tag="BSU00970"
     promotor_-35    116536..116543
                     /Source="Nicolas_upshift_promotors"
                     /id="U86"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig=1
                     /xcortree=3212
                     /SigmaFactorBS="aaacgtttgaaaagtggaggcggggagacttagattAAGTTG
                     ACgcttttttgcccaaTACTGTATAATATTTCTATCtacgtgcgccggggggatcgga
                     g"
                     /listShort="sigH, S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     promotor_-10    116558..116577
                     /Source="Nicolas_upshift_promotors"
                     /id="U86"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig=1
                     /xcortree=3212
                     /SigmaFactorBS="aaacgtttgaaaagtggaggcggggagacttagattAAGTTG
                     ACgcttttttgcccaaTACTGTATAATATTTCTATCtacgtgcgccggggggatcgga
                     g"
                     /listShort="sigH, S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     upshifts        116560
                     /Source="Nicolas_upshifts"
                     /id="U86"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig=1
                     /xcortree=3212
                     /SigmaFactorBS="aaacgtttgaaaagtggaggcggggagacttagattAAGTTG
                     ACgcttttttgcccaaTACTGTATAATATTTCTATCtacgtgcgccggggggatcgga
                     g"
                     /listShort="sigH, S47, rpmGB, secE, S48, nusG"
                     /listLong="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC, S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
     CDS             116600..117256
                     /gene="sigH"
                     /locus_tag="BSU_00980"
                     /old_locus_tag="BSU00980"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12169614, 16339734, 25288929, 26712348"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12169614, 16339734,
                     25288929, 26712348; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-30 factor (sigma(H))"
                     /protein_id="NP_387979.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00980"
                     /db_xref="EnsemblGenomes-Tr:CAB11874"
                     /db_xref="GOA:P17869"
                     /db_xref="InterPro:IPR000792"
                     /db_xref="InterPro:IPR000943"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR013249"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014218"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="InterPro:IPR016371"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG10159"
                     /db_xref="UniProtKB/Swiss-Prot:P17869"
                     /translation="MNLQNNKGKFNKEQFCQLEDEQVIEKVHVGDSDALDYLITKYRN
                     FVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFKEDKLTSFKAFAELCITRQIITAI
                     KTATRQKHIPLNSYASLDKPIFDEESDRTLLDVISGAKTLNPEEMIINQEEFDDIEMK
                     MGELLSDLERKVLVLYLDGRSYQEISDELNRHVKSIDNALQRVKRKLEKYLEIREISL
                     *"
     gene            116600..117256
                     /gene="sigH"
                     /locus_tag="BSU_00980"
                     /old_locus_tag="BSU00980"
     downshifts      complement(117054)
                     /Source="Nicolas_upshifts"
                     /id="D40"
                     /incds=1
                     /nref=1
                     /ntot=107
                     /MaxReadThrough="2.38622"
                     /MaxDrop="2.50464"
                     /score="-2.56993398"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U87"
                     /TUdmin=836
                     /isTUend="FALSE"
     S_feature       117257..117348
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_117257_117348"
                     /HighExp="T4.0H, T3.30H, T3.0H, T2.30H, S1, S2, T5.0H,
                     HiOs, T2.0H, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="SigK, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 1, 1, 0.947"
                     /label="S47"
     CDS             117349..117498
                     /gene="rpmGB"
                     /locus_tag="BSU_00990"
                     /old_locus_tag="BSU00990"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14586115, 19648245, 23002217, 27561249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14586115,
                     19648245, 23002217, 27561249; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L33"
                     /protein_id="NP_387980.1"
                     /db_xref="EnsemblGenomes-Gn:BSU00990"
                     /db_xref="EnsemblGenomes-Tr:CAB11875"
                     /db_xref="GOA:Q06798"
                     /db_xref="InterPro:IPR001705"
                     /db_xref="InterPro:IPR011332"
                     /db_xref="InterPro:IPR018264"
                     /db_xref="SubtiList:BG10160"
                     /db_xref="UniProtKB/Swiss-Prot:Q06798"
                     /translation="MRKKITLACKTCGNRNYTTMKSSASAAERLEVKKYCSTCNSHTA
                     HLETK*"
     gene            117349..117498
                     /gene="rpmGB"
                     /locus_tag="BSU_00990"
                     /old_locus_tag="BSU00990"
     CDS             117532..117711
                     /gene="secE"
                     /locus_tag="BSU_01000"
                     /old_locus_tag="BSU01000"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11976315, 12682299, 16242710, 22304380, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11976315, 12682299,
                     16242710, 22304380, 22720735; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit"
                     /protein_id="NP_387981.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01000"
                     /db_xref="EnsemblGenomes-Tr:CAB11876"
                     /db_xref="GOA:Q06799"
                     /db_xref="InterPro:IPR001901"
                     /db_xref="InterPro:IPR005807"
                     /db_xref="InterPro:IPR022943"
                     /db_xref="SubtiList:BG10161"
                     /db_xref="UniProtKB/Swiss-Prot:Q06799"
                     /translation="MRIMKFFKDVGKEMKKVSWPKGKELTRYTITVISTVIFFVIFFA
                     LLDTGISQLIRLIVE*"
     gene            117532..117711
                     /gene="secE"
                     /locus_tag="BSU_01000"
                     /old_locus_tag="BSU01000"
     S_feature       117712..117889
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_117712_117889"
                     /HighExp="Cold, G180, G150, H2O2, LoTm, Oxctl, G135,
                     Paraq, LBGexp, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="SigK, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 1, 1, 0.947"
                     /label="S48"
     downshifts      complement(117883)
                     /Source="Nicolas_upshifts"
                     /id="D41"
                     /incds=0
                     /nref=37
                     /ntot=175
                     /MaxReadThrough="1.57397"
                     /MaxDrop="4.03552"
                     /score="-2.56993398"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U87"
                     /TUdmin=7
                     /isTUend="TRUE"
     CDS             117890..118423
                     /gene="nusG"
                     /locus_tag="BSU_01010"
                     /old_locus_tag="BSU01010"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11101662, 16014871, 16707701, 18852477, 26742846,
                     28507243"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11101662, 16014871,
                     16707701, 18852477, 26742846, 28507243; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase elongation pause factor"
                     /protein_id="NP_387982.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01010"
                     /db_xref="EnsemblGenomes-Tr:CAB11877"
                     /db_xref="GOA:Q06795"
                     /db_xref="InterPro:IPR001062"
                     /db_xref="InterPro:IPR005824"
                     /db_xref="InterPro:IPR006645"
                     /db_xref="InterPro:IPR008991"
                     /db_xref="InterPro:IPR014722"
                     /db_xref="InterPro:IPR015869"
                     /db_xref="InterPro:IPR036735"
                     /db_xref="SubtiList:BG10162"
                     /db_xref="UniProtKB/Swiss-Prot:Q06795"
                     /translation="MEKNWYVVHTYSGYENKVKANLEKRVESMGMQDKIFRVVVPEEE
                     ETDIKNGKKKVVKKKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLL
                     PGEAETILKRMGMDERKTDIDFELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNM
                     FGRETPVELEFTQIDKL*"
     gene            117890..118423
                     /gene="nusG"
                     /locus_tag="BSU_01010"
                     /old_locus_tag="BSU01010"
     upshifts        complement(117978)
                     /Source="Nicolas_upshifts"
                     /id="U87"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.98001998001998"
                     /psig="0.002997002997003"
                     /xcortree=29
                     /SigmaFactorBS="tttttgatatccgtttcttcttcttcgggtacgACTACAcgg
                     aaaattttatcCTGCAtccccattgattcaacacgcttttccaagttggcttttactt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(117981..117985)
                     /Source="Nicolas_upshift_promotors"
                     /id="U87"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.98001998001998"
                     /psig="0.002997002997003"
                     /xcortree=29
                     /SigmaFactorBS="tttttgatatccgtttcttcttcttcgggtacgACTACAcgg
                     aaaattttatcCTGCAtccccattgattcaacacgcttttccaagttggcttttactt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(118000..118005)
                     /Source="Nicolas_upshift_promotors"
                     /id="U87"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.98001998001998"
                     /psig="0.002997002997003"
                     /xcortree=29
                     /SigmaFactorBS="tttttgatatccgtttcttcttcttcgggtacgACTACAcgg
                     aaaattttatcCTGCAtccccattgattcaacacgcttttccaagttggcttttactt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    118434..118441
                     /Source="Nicolas_upshift_promotors"
                     /id="U88"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.787212787212787"
                     /psig=1
                     /xcortree=2652
                     /SigmaFactorBS="agctggaatttacccaaatcgataaattgtaatgtgaaaaaa
                     CTTGAAATtgctatatataaaTGATAATATAGCAAAGGTACgtcttggacttatccaa
                     g"
                     /listShort="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     S_feature       118452..118590
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_118452_118590"
                     /HighExp="T-1.40H, ferm, T-3.40H, T-5.40H, BI, B36, LoTm,
                     SMM, T-2.40H, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S49"
     upshifts        118452
                     /Source="Nicolas_upshifts"
                     /id="U88"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.787212787212787"
                     /psig=1
                     /xcortree=2652
                     /SigmaFactorBS="agctggaatttacccaaatcgataaattgtaatgtgaaaaaa
                     CTTGAAATtgctatatataaaTGATAATATAGCAAAGGTACgtcttggacttatccaa
                     g"
                     /listShort="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
     promotor_-10    118455..118474
                     /Source="Nicolas_upshift_promotors"
                     /id="U88"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.787212787212787"
                     /psig=1
                     /xcortree=2652
                     /SigmaFactorBS="agctggaatttacccaaatcgataaattgtaatgtgaaaaaa
                     CTTGAAATtgctatatataaaTGATAATATAGCAAAGGTACgtcttggacttatccaa
                     g"
                     /listShort="S49, rplK, S50, rplA, NA, rplJ, rplL, ybxB,
                     S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG, fusA, S54,
                     tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     CDS             118591..119016
                     /gene="rplK"
                     /locus_tag="BSU_01020"
                     /old_locus_tag="BSU01020"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11244072, 19653700, 20441189"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11244072, 19653700,
                     20441189; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L11 (BL11)"
                     /protein_id="NP_387983.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01020"
                     /db_xref="EnsemblGenomes-Tr:CAB11878"
                     /db_xref="GOA:Q06796"
                     /db_xref="InterPro:IPR000911"
                     /db_xref="InterPro:IPR006519"
                     /db_xref="InterPro:IPR020783"
                     /db_xref="InterPro:IPR020784"
                     /db_xref="InterPro:IPR020785"
                     /db_xref="InterPro:IPR036769"
                     /db_xref="InterPro:IPR036796"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="SubtiList:BG10163"
                     /db_xref="UniProtKB/Swiss-Prot:Q06796"
                     /translation="MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNA
                     RTADQAGLIIPVEISVYEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKR
                     DKVREIAETKMPDLNAADVEAAMRMVEGTARSMGIVIED*"
     gene            118591..119016
                     /gene="rplK"
                     /locus_tag="BSU_01020"
                     /old_locus_tag="BSU01020"
     S_feature       119017..119110
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_119017_119110"
                     /HighExp="HPh, LPh, Lbexp, G180, LBGexp, G150, Heat, Cold,
                     Fru, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S50"
     CDS             119111..119809
                     /gene="rplA"
                     /locus_tag="BSU_01030"
                     /old_locus_tag="BSU01030"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 16352840,
                     17981968, 22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L1 (BL1)"
                     /protein_id="NP_387984.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01030"
                     /db_xref="EnsemblGenomes-Tr:CAB11879"
                     /db_xref="GOA:Q06797"
                     /db_xref="InterPro:IPR002143"
                     /db_xref="InterPro:IPR005878"
                     /db_xref="InterPro:IPR016095"
                     /db_xref="InterPro:IPR023673"
                     /db_xref="InterPro:IPR023674"
                     /db_xref="InterPro:IPR028364"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="SubtiList:BG10164"
                     /db_xref="UniProtKB/Swiss-Prot:Q06797"
                     /translation="MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEV
                     AFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYIN
                     KIQQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGK
                     VEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTM
                     GPGVKVDSSTFNVK*"
     gene            119111..119809
                     /gene="rplA"
                     /locus_tag="BSU_01030"
                     /old_locus_tag="BSU01030"
     downshifts      complement(119783)
                     /Source="Nicolas_upshifts"
                     /id="D42"
                     /incds=0
                     /nref=3
                     /ntot=95
                     /MaxReadThrough="3.54108"
                     /MaxDrop="3.36566"
                     /score="-2.56993398"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U89"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_RNA        119855..119995
                     /gene="ldlJ"
                     /locus_tag="BSU_misc_RNA_3"
                     /product="L10_leader"
                     /experiment="publication(s) with functional evidences,
                     PMID:26101249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 26101249; Product type n:
                     RNA"
     gene            119855..119995
                     /gene="ldlJ"
                     /locus_tag="BSU_misc_RNA_3"
     upshifts        complement(119871)
                     /Source="Nicolas_upshifts"
                     /id="U89"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.603396603396603"
                     /psig="0.248751248751249"
                     /xcortree=60
                     /SigmaFactorBS="gctgtgataatatacacctcggtaggataattaagcggttag
                     gcccctactgtCTACGgtataaatgatattctattttacaacattttgaataatatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    complement(119874..119878)
                     /Source="Nicolas_upshift_promotors"
                     /id="U89"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.603396603396603"
                     /psig="0.248751248751249"
                     /xcortree=60
                     /SigmaFactorBS="gctgtgataatatacacctcggtaggataattaagcggttag
                     gcccctactgtCTACGgtataaatgatattctattttacaacattttgaataatatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     downshifts      119927
                     /Source="Nicolas_upshifts"
                     /id="D43"
                     /incds=1
                     /nref=1
                     /ntot=19
                     /MaxReadThrough="9.14839"
                     /MaxDrop="2.9211"
                     /score="20.0562348"
                     /energy="-13.2"
                     /TU="U88"
                     /idTUdmin="U84"
                     /TUdmin=1497
                     /isTUend="FALSE"
     CDS             120061..120561
                     /gene="rplJ"
                     /locus_tag="BSU_01040"
                     /old_locus_tag="BSU01040"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9810686, 11341315, 12682299, 18247578, 26101249,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9810686, 11341315,
                     12682299, 18247578, 26101249, 22720735; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L10 (BL5)"
                     /protein_id="NP_387985.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01040"
                     /db_xref="EnsemblGenomes-Tr:CAB11880"
                     /db_xref="GOA:P42923"
                     /db_xref="InterPro:IPR001790"
                     /db_xref="InterPro:IPR002363"
                     /db_xref="InterPro:IPR022973"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11220"
                     /db_xref="UniProtKB/Swiss-Prot:P42923"
                     /translation="MSSAIETKKVVVEEIASKLKESKSTIIVDYRGLNVSEVTELRKQ
                     LREANVEFKVYKNTMTRRAVEQAELNGLNDFLTGPNAIAFSTEDVVAPAKVLNDFAKN
                     HEALEIKAGVIEGKVSTVEEVKALAELPSREGLLSMLLSVLQAPVRNLALAAKAVAEQ
                     KEEQGA*"
     gene            120061..120561
                     /gene="rplJ"
                     /locus_tag="BSU_01040"
                     /old_locus_tag="BSU01040"
     CDS             120607..120978
                     /gene="rplL"
                     /locus_tag="BSU_01050"
                     /old_locus_tag="BSU01050"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 6771249, 8755892, 26101249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 6771249,
                     8755892, 26101249; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L12 (BL9)"
                     /protein_id="NP_387986.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01050"
                     /db_xref="EnsemblGenomes-Tr:CAB11881"
                     /db_xref="GOA:P02394"
                     /db_xref="InterPro:IPR000206"
                     /db_xref="InterPro:IPR008932"
                     /db_xref="InterPro:IPR013823"
                     /db_xref="InterPro:IPR014719"
                     /db_xref="InterPro:IPR036235"
                     /db_xref="SubtiList:BG10726"
                     /db_xref="UniProtKB/Swiss-Prot:P02394"
                     /translation="MALNIEEIIASVKEATVLELNDLVKAIEEEFGVTAAAPVAVAGG
                     AAAGGAAEEQSEFDLILAGAGSQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIA
                     KEEAEELKAKLEEVGASVEVK*"
     gene            120607..120978
                     /gene="rplL"
                     /locus_tag="BSU_01050"
                     /old_locus_tag="BSU01050"
     downshifts      120894
                     /Source="Nicolas_upshifts"
                     /id="D44"
                     /incds=1
                     /nref=5
                     /ntot=149
                     /MaxReadThrough="8.89506"
                     /MaxDrop="4.0945"
                     /score="20.6066659"
                     /energy="-11.7"
                     /TU="U88"
                     /idTUdmin="U84"
                     /TUdmin=2464
                     /isTUend="FALSE"
     downshifts      120967
                     /Source="Nicolas_upshifts"
                     /id="D45"
                     /incds=0
                     /nref=25
                     /ntot=157
                     /MaxReadThrough="7.44654"
                     /MaxDrop="4.0033"
                     /score="20.6066659"
                     /energy="-11.7"
                     /TU="U88"
                     /idTUdmin="U84"
                     /TUdmin=2537
                     /isTUend="FALSE"
     CDS             121068..121673
                     /gene="rlmG"
                     /locus_tag="BSU_01060"
                     /old_locus_tag="BSU01060"
                     /EC_number="2.1.1.174"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 17010380; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA m2G1835 methyltransferase"
                     /protein_id="NP_387987.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01060"
                     /db_xref="EnsemblGenomes-Tr:CAB11882"
                     /db_xref="GOA:P37872"
                     /db_xref="InterPro:IPR007848"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG10727"
                     /db_xref="UniProtKB/Swiss-Prot:P37872"
                     /translation="MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDF
                     GSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENA
                     EQNGITNVKIYQSDLFSNVDSAQTFASILTNPPIRAGKKVVHAIFEKSAEHLKASGEL
                     WIVIQKKQGAPSAIEKLEELFDEVSVVQKKKGYYIIKAKKV*"
     gene            121068..121673
                     /gene="rlmG"
                     /locus_tag="BSU_01060"
                     /old_locus_tag="BSU01060"
     promotor_-35    121668..121672
                     /Source="Nicolas_upshift_promotors"
                     /id="U90"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.997002997002997"
                     /xcortree=2493
                     /SigmaFactorBS="gttcaaaaaaagaaaggctattatatcataaaagcaaaaaaa
                     GTTTGactcggtattttaacTATGTTAATATTGTAAAATGccaatgtatatattttgc
                     t"
                     /listShort="S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG,
                     fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     S_feature       121686..121918
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_121686_121918"
                     /HighExp="G180, G150, H2O2, G135, Cold, T-5.40H, LoTm,
                     T-3.40H, Oxctl, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 1"
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S51"
     upshifts        121686
                     /Source="Nicolas_upshifts"
                     /id="U90"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.997002997002997"
                     /xcortree=2493
                     /SigmaFactorBS="gttcaaaaaaagaaaggctattatatcataaaagcaaaaaaa
                     GTTTGactcggtattttaacTATGTTAATATTGTAAAATGccaatgtatatattttgc
                     t"
                     /listShort="S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG,
                     fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
     promotor_-10    121688..121707
                     /Source="Nicolas_upshift_promotors"
                     /id="U90"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.997002997002997"
                     /xcortree=2493
                     /SigmaFactorBS="gttcaaaaaaagaaaggctattatatcataaaagcaaaaaaa
                     GTTTGactcggtattttaacTATGTTAATATTGTAAAATGccaatgtatatattttgc
                     t"
                     /listShort="S51, rpoB, rpoC, S52, rplGB, S53, rpsL, rpsG,
                     fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     CDS             121919..125500
                     /gene="rpoB"
                     /locus_tag="BSU_01070"
                     /old_locus_tag="BSU01070"
                     /EC_number="2.7.7.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10049799, 10744988, 12455702, 12682299, 15060052,
                     28163698"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10049799, 10744988,
                     12455702, 12682299, 15060052, 28163698; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase (beta subunit)"
                     /protein_id="NP_387988.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01070"
                     /db_xref="EnsemblGenomes-Tr:CAB11883"
                     /db_xref="GOA:P37870"
                     /db_xref="InterPro:IPR007120"
                     /db_xref="InterPro:IPR007121"
                     /db_xref="InterPro:IPR007641"
                     /db_xref="InterPro:IPR007642"
                     /db_xref="InterPro:IPR007644"
                     /db_xref="InterPro:IPR007645"
                     /db_xref="InterPro:IPR010243"
                     /db_xref="InterPro:IPR015712"
                     /db_xref="InterPro:IPR019462"
                     /db_xref="PDB:2LY7"
                     /db_xref="SubtiList:BG10728"
                     /db_xref="UniProtKB/Swiss-Prot:P37870"
                     /translation="MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEG
                     LREMFQDISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLINKE
                     TGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTA
                     TVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLR
                     NTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKIN
                     KKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVLPYLENGIGFRKLYPN
                     GGVVEDEVTLQSIKIFAPTDQEGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLL
                     HGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLIN
                     IRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGMEVRDVHY
                     SHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFIETPYRRVDPETGKVTGRIDYLTA
                     DEEDNYVVAQANARLDDEGAFIDDSIVARFRGENTVVSRNRVDYMDVSPKQVVSAATA
                     CIPFLENDDSNRALMGANMQRQAVPLMQPEAPFVGTGMEYVSGKDSGAAVICKHPGIV
                     ERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGE
                     ILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESE
                     ARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDGDLLVGKVTPKGVTELTA
                     EERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRVYIV
                     QKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVL
                     ELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRV
                     SVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA
                     AYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKILS
                     GDEEEIEMRDLEDEEDAKQADGLALSGDEEPEETASADVERDVVTKE*"
     gene            121919..125500
                     /gene="rpoB"
                     /locus_tag="BSU_01070"
                     /old_locus_tag="BSU01070"
     promotor_-10    complement(123504..123523)
                     /Source="Nicolas_upshift_promotors"
                     /id="U91"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1252
                     /SigmaFactorBS="acgcggcgatatggcgtttcaATAAAGCCAAaacggtttact
                     ttTGCATAAGATGATAGTGAGTtgatcaaaccgatgttcgggccctcaggcgtttcaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(123507)
                     /Source="Nicolas_upshifts"
                     /id="U91"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1252
                     /SigmaFactorBS="acgcggcgatatggcgtttcaATAAAGCCAAaacggtttact
                     ttTGCATAAGATGATAGTGAGTtgatcaaaccgatgttcgggccctcaggcgtttcaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(123537..123546)
                     /Source="Nicolas_upshift_promotors"
                     /id="U91"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1252
                     /SigmaFactorBS="acgcggcgatatggcgtttcaATAAAGCCAAaacggtttact
                     ttTGCATAAGATGATAGTGAGTtgatcaaaccgatgttcgggccctcaggcgtttcaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(124375..124379)
                     /Source="Nicolas_upshift_promotors"
                     /id="U92"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig=0
                     /xcortree=63
                     /SigmaFactorBS="agatctccgtcttttacttctgccccaatacggatgattcCG
                     CGGTCatcaagattgcgaaGCGCAtcttcaccgacgtttggaatatcgcgagtgattt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(124380)
                     /Source="Nicolas_upshifts"
                     /id="U92"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig=0
                     /xcortree=63
                     /SigmaFactorBS="agatctccgtcttttacttctgccccaatacggatgattcCG
                     CGGTCatcaagattgcgaaGCGCAtcttcaccgacgtttggaatatcgcgagtgattt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(124394..124400)
                     /Source="Nicolas_upshift_promotors"
                     /id="U92"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig=0
                     /xcortree=63
                     /SigmaFactorBS="agatctccgtcttttacttctgccccaatacggatgattcCG
                     CGGTCatcaagattgcgaaGCGCAtcttcaccgacgtttggaatatcgcgagtgattt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             125562..129161
                     /gene="rpoC"
                     /locus_tag="BSU_01080"
                     /old_locus_tag="BSU01080"
                     /EC_number="2.7.7.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10672039, 10675340, 10910724, 11029421, 9795209,
                     10438769, 23070162, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10672039, 10675340,
                     10910724, 11029421, 9795209, 10438769, 23070162, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase (beta' subunit)"
                     /protein_id="NP_387989.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01080"
                     /db_xref="EnsemblGenomes-Tr:CAB11884"
                     /db_xref="GOA:P37871"
                     /db_xref="InterPro:IPR000722"
                     /db_xref="InterPro:IPR006592"
                     /db_xref="InterPro:IPR007066"
                     /db_xref="InterPro:IPR007080"
                     /db_xref="InterPro:IPR007081"
                     /db_xref="InterPro:IPR007083"
                     /db_xref="InterPro:IPR012754"
                     /db_xref="SubtiList:BG10729"
                     /db_xref="UniProtKB/Swiss-Prot:P37871"
                     /translation="MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKD
                     GLFCERIFGPTKDWECHCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVS
                     HIWYFKGIPSRMGLVLDMSPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLD
                     KYGNKFQASMGAEAIHKLLQDIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRN
                     SGNKPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGA
                     PSIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGK
                     RVDYSGRSVIVVGPHLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIER
                     VQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADF
                     DGDQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERAG
                     AVGEGMVFKNTDEALLAYQNGYVHLHTRVAVAANSLKNVTFTEEQRSKLLITTVGKLV
                     FNEILPESFPYMNEPTKSNIEEKTPDRFFLEKGADVKAVIAQQPINAPFKKGILGKII
                     AEIFKRFHITETSKMLDRMKNLGFKYSTKAGITVGVSDIVVLDDKQEILEEAQSKVDN
                     VMKQFRRGLITEEERYERVISIWSAAKDVIQGKLMKSLDELNPIYMMSDSGARGNASN
                     FTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSG
                     YLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTETIERLEERLIGRFARKQVKHPE
                     TGEVLVNENELIDEDKALEIVEAGIEEVWIRSAFTCNTPHGVCKRCYGRNLATGSDVE
                     VGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELFEARNPKGQATIT
                     EIDGTVVEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVAEGDKITRGQVLTEGSID
                     PKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVIDAGDTDV
                     LPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQETTRVL
                     TDAAIKGKRDELLGLKENVIIGKLVPAGTGMMKYRKVKPVSNVQPTDDMVPVE*"
     gene            125562..129161
                     /gene="rpoC"
                     /locus_tag="BSU_01080"
                     /old_locus_tag="BSU01080"
     downshifts      complement(128626)
                     /Source="Nicolas_upshifts"
                     /id="D46"
                     /incds=1
                     /nref=1
                     /ntot=76
                     /MaxReadThrough="3.40002"
                     /MaxDrop="2.38911"
                     /score="-2.05539956"
                     /energy="-7.5"
                     /TU="U93"
                     /idTUdmin="U93"
                     /TUdmin="-132"
                     /isTUend="FALSE"
     upshifts        complement(128780)
                     /Source="Nicolas_upshifts"
                     /id="U93"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.952047952047952"
                     /psig="0.000999000999001"
                     /xcortree=64
                     /SigmaFactorBS="caatgtacctggaagcacatcagtgtcaccggcatcaatcaC
                     Gcgtactttgcgaagcatctggcgaaccattacttctacgtgtttatcaccgatttca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    complement(128798..128799)
                     /Source="Nicolas_upshift_promotors"
                     /id="U93"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.952047952047952"
                     /psig="0.000999000999001"
                     /xcortree=64
                     /SigmaFactorBS="caatgtacctggaagcacatcagtgtcaccggcatcaatcaC
                     Gcgtactttgcgaagcatctggcgaaccattacttctacgtgtttatcaccgatttca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     downshifts      complement(129110)
                     /Source="Nicolas_upshifts"
                     /id="D47"
                     /incds=0
                     /nref=98
                     /ntot=210
                     /MaxReadThrough="1.61828"
                     /MaxDrop="4.90549"
                     /score="-2.05539956"
                     /energy="-7.5"
                     /TU="NA"
                     /idTUdmin="U95"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       129162..129283
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_129162_129283"
                     /HighExp="LoTm, HiOs, S3, SMMPr, Heat, S1, BC, Glu, S4, MG
                     45"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 1"
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S52"
     promotor_-35    129265..129272
                     /Source="Nicolas_upshift_promotors"
                     /id="U94"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.781218781218781"
                     /psig=1
                     /xcortree=2650
                     /SigmaFactorBS="cactctatgagaagaacgaatctaaaaaatgtcataccttGT
                     TGACATtcgtctcctagaaTGATAATATAACCAAGGTGCtcgaaataaacctgttact
                     t"
                     /listShort="rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-35"
     upshifts        129285
                     /Source="Nicolas_upshifts"
                     /id="U94"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.781218781218781"
                     /psig=1
                     /xcortree=2650
                     /SigmaFactorBS="cactctatgagaagaacgaatctaaaaaatgtcataccttGT
                     TGACATtcgtctcctagaaTGATAATATAACCAAGGTGCtcgaaataaacctgttact
                     t"
                     /listShort="rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
     promotor_-10    129286..129305
                     /Source="Nicolas_upshift_promotors"
                     /id="U94"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.781218781218781"
                     /psig=1
                     /xcortree=2650
                     /SigmaFactorBS="cactctatgagaagaacgaatctaaaaaatgtcataccttGT
                     TGACATtcgtctcctagaaTGATAATATAACCAAGGTGCtcgaaataaacctgttact
                     t"
                     /listShort="rplGB, S53, rpsL, rpsG, fusA, S54, tufA, ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_-10"
     misc_feature    complement(129303..129307)
                     /Source="Nicolas_upshift_promotors"
                     /id="U95"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.909090909090909"
                     /psig="0.023976023976024"
                     /xcortree=67
                     /SigmaFactorBS="ggcctgtgatactttatcataagacataaacatatcctccaa
                     agtaacaggtttatttcGAGCAccttggttatattatcattctaggagacgaatgtca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(129306)
                     /Source="Nicolas_upshifts"
                     /id="U95"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.909090909090909"
                     /psig="0.023976023976024"
                     /xcortree=67
                     /SigmaFactorBS="ggcctgtgatactttatcataagacataaacatatcctccaa
                     agtaacaggtttatttcGAGCAccttggttatattatcattctaggagacgaatgtca
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             129340..129588
                     /gene="rulS"
                     /locus_tag="BSU_01090"
                     /old_locus_tag="BSU01090"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11574053, 11948165, 17468242, 7657605, 22355167,
                     23249744, 24204571, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11574053, 11948165,
                     17468242, 7657605, 22355167, 23249744, 24204571, 22720735;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="K-turn RNA binding protein; alternative
                     ribosomal protein L7A"
                     /protein_id="NP_387990.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01090"
                     /db_xref="EnsemblGenomes-Tr:CAB11885"
                     /db_xref="GOA:P46350"
                     /db_xref="InterPro:IPR000948"
                     /db_xref="InterPro:IPR004038"
                     /db_xref="InterPro:IPR023460"
                     /db_xref="InterPro:IPR029064"
                     /db_xref="PDB:3V7E"
                     /db_xref="PDB:4LCK"
                     /db_xref="PDB:4TZP"
                     /db_xref="PDB:4TZV"
                     /db_xref="PDB:4TZW"
                     /db_xref="PDB:4TZZ"
                     /db_xref="SubtiList:BG11365"
                     /db_xref="UniProtKB/Swiss-Prot:P46350"
                     /translation="MSYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSS
                     VVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAIIL*"
     gene            129340..129588
                     /gene="rulS"
                     /locus_tag="BSU_01090"
                     /old_locus_tag="BSU01090"
     S_feature       129589..129701
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_129589_129701"
                     /HighExp="T-3.40H, M/G, T-1.40H, T-5.40H, Salt, Mal,
                     T-0.40H, G/S, M9-exp, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="1, 0.997, 1"
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S53"
     CDS             129702..130118
                     /gene="rpsL"
                     /locus_tag="BSU_01100"
                     /old_locus_tag="BSU01100"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11489846, 12682299, 16484214, 18252828, 19383706,
                     20007320"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11489846, 12682299,
                     16484214, 18252828, 19383706, 20007320; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S12 (BS12)"
                     /protein_id="NP_387991.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01100"
                     /db_xref="EnsemblGenomes-Tr:CAB11886"
                     /db_xref="GOA:P21472"
                     /db_xref="InterPro:IPR005679"
                     /db_xref="InterPro:IPR006032"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19009"
                     /db_xref="UniProtKB/Swiss-Prot:P21472"
                     /translation="MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKR
                     GVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKD
                     LPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK*"
     gene            129702..130118
                     /gene="rpsL"
                     /locus_tag="BSU_01100"
                     /old_locus_tag="BSU01100"
     CDS             130160..130630
                     /gene="rpsG"
                     /locus_tag="BSU_01110"
                     /old_locus_tag="BSU01110"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8722036, 12682299, 19653700"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8722036, 12682299,
                     19653700; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S7 (BS7)"
                     /protein_id="NP_387992.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01110"
                     /db_xref="EnsemblGenomes-Tr:CAB11887"
                     /db_xref="GOA:P21469"
                     /db_xref="InterPro:IPR000235"
                     /db_xref="InterPro:IPR005717"
                     /db_xref="InterPro:IPR020606"
                     /db_xref="InterPro:IPR023798"
                     /db_xref="InterPro:IPR036823"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19006"
                     /db_xref="UniProtKB/Swiss-Prot:P21469"
                     /translation="MPRKGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILY
                     KSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLR
                     WLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW*"
     gene            130160..130630
                     /gene="rpsG"
                     /locus_tag="BSU_01110"
                     /old_locus_tag="BSU01110"
     CDS             130684..132762
                     /gene="fusA"
                     /locus_tag="BSU_01120"
                     /old_locus_tag="BSU01120"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:815236, 815243, 1556067, 4629789, 19366171, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 815236, 815243, 1556067,
                     4629789, 19366171, 22720735; Product type e : enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="NP_387993.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01120"
                     /db_xref="EnsemblGenomes-Tr:CAB11888"
                     /db_xref="GOA:P80868"
                     /db_xref="InterPro:IPR000640"
                     /db_xref="InterPro:IPR000795"
                     /db_xref="InterPro:IPR004161"
                     /db_xref="InterPro:IPR004540"
                     /db_xref="InterPro:IPR005225"
                     /db_xref="InterPro:IPR005517"
                     /db_xref="InterPro:IPR009000"
                     /db_xref="InterPro:IPR009022"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031157"
                     /db_xref="InterPro:IPR035647"
                     /db_xref="InterPro:IPR035649"
                     /db_xref="PDB:5VH6"
                     /db_xref="SubtiList:BG11939"
                     /db_xref="UniProtKB/Swiss-Prot:P80868"
                     /translation="MAREFSLEKTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETH
                     EGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTVEVERSLRVLDGA
                     VAVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGADFLYSVGTLRDRLQANAH
                     AIQLPIGAEDNFEGIIDLVENVAYFYEDDLGTRSDAKEIPEEYKEQAEELRNSLIEAV
                     CELDEELMDKYLEGEEITIDELKAGIRKGTLNVEFYPVLVGSAFKNKGVQLVLDAVLD
                     YLPAPTDVAAIKGTRPDTNEEIERHSSDEEPFSALAFKVMTDPYVGKLTFFRVYSGTL
                     DSGSYVKNSTKGKRERVGRILQMHANSREEISTVYAGDIAAAVGLKDTTTGDTLCDEK
                     DLVILESMEFPEPVIDVAIEPKSKADQDKMGIALAKLAEEDPTFRTQTNPETGQTIIS
                     GMGELHLDIIVDRMKREFKVEANVGAPQVAYRETFRTGAKVEGKFVRQSGGRGQFGHV
                     WIEFEPNEEGAGFEFENAIVGGVVPREYIPAVQAGLEDALENGVLAGFPLIDIKAKLF
                     DGSYHDVDSNEMAFKVAASMALKNAVSKCNPVLLEPIMKVEVVIPEEYMGDIMGDITS
                     RRGRVEGMEARGNAQVVRAMVPLAEMFGYATALRSNTQGRGTFTMHMDHYEEVPKSVA
                     EEIIKKNKGE*"
     gene            130684..132762
                     /gene="fusA"
                     /locus_tag="BSU_01120"
                     /old_locus_tag="BSU01120"
     S_feature       132763..132881
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_132763_132881"
                     /HighExp="T-5.40H, T-4.40H, UNK1, SMM, HiTm, T-3.40H,
                     T-2.40H, SMMPr, MG 90, MG 15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="1, 0.997, 1"
                     /TUlongSig="SigA, SigK, SigA, SigWXY, SigA, SigB, SigA"
                     /TUlongPSig="1, 1, 0.999, 1, 1, 1, 0.947"
                     /label="S54"
     CDS             132882..134072
                     /gene="tufA"
                     /locus_tag="BSU_01130"
                     /old_locus_tag="BSU01130"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10774755, 12682299, 7706132, 20133608, 22938038,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10774755, 12682299,
                     7706132, 20133608, 22938038, 22720735; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="NP_387994.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01130"
                     /db_xref="EnsemblGenomes-Tr:CAB11889"
                     /db_xref="GOA:P33166"
                     /db_xref="InterPro:IPR000795"
                     /db_xref="InterPro:IPR004160"
                     /db_xref="InterPro:IPR004161"
                     /db_xref="InterPro:IPR004541"
                     /db_xref="InterPro:IPR005225"
                     /db_xref="InterPro:IPR009000"
                     /db_xref="InterPro:IPR009001"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031157"
                     /db_xref="InterPro:IPR033720"
                     /db_xref="SubtiList:BG11056"
                     /db_xref="UniProtKB/Swiss-Prot:P33166"
                     /translation="MAKEKFDRSKSHANIGTIGHVDHGKTTLTAAITTVLHKKSGKGT
                     AMAYDQIDGAPEERERGITISTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDG
                     AILVVSAADGPMPQTREHILLSKNVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLS
                     EYDFPGDDVPVVKGSALKALEGDAEWEAKIFELMDAVDEYIPTPERDTEKPFMMPVED
                     VFSITGRGTVATGRVERGQVKVGDEVEIIGLQEENKKTTVTGVEMFRKLLDYAEAGDN
                     IGALLRGVSREEIQRGQVLAKPGTITPHSKFKAEVYVLSKEEGGRHTPFFSNYRPQFY
                     FRTTDVTGIIHLPEGVEMVMPGDNTEMNVELISTIAIEEGTRFSIREGGRTVGSGVVS
                     TITE*"
     gene            132882..134072
                     /gene="tufA"
                     /locus_tag="BSU_01130"
                     /old_locus_tag="BSU01130"
     downshifts      134067
                     /Source="Nicolas_upshifts"
                     /id="D48"
                     /incds=0
                     /nref=258
                     /ntot=269
                     /MaxReadThrough="4.84568"
                     /MaxDrop="8.56168"
                     /score="39.3984056"
                     /energy="-12.9"
                     /TU="U88,U90,U94"
                     /idTUdmin="U88"
                     /TUdmin="-1081"
                     /isTUend="FALSE"
     misc_feature    complement(134098..134101)
                     /Source="Nicolas_upshift_promotors"
                     /id="U96"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.917082917082917"
                     /psig="0.001998001998002"
                     /xcortree=68
                     /SigmaFactorBS="acccctcgaatatgatagatcctattatacaagaaaaagata
                     agcaaacaaaaaacgagacCCACaggggtctcgtttaaaaccatactattactcagtg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(134102)
                     /Source="Nicolas_upshifts"
                     /id="U96"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.917082917082917"
                     /psig="0.001998001998002"
                     /xcortree=68
                     /SigmaFactorBS="acccctcgaatatgatagatcctattatacaagaaaaagata
                     agcaaacaaaaaacgagacCCACaggggtctcgtttaaaaccatactattactcagtg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    134128..134147
                     /Source="Nicolas_upshift_promotors"
                     /id="U97"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.846153846153846"
                     /psig=1
                     /xcortree=1878
                     /SigmaFactorBS="tatggttttaaacgagacccctgtgggtctcgttttttgttt
                     gcttatctttTTCTTGTATAATAGGATCTAtcatattcgaggggttaatatttatgat
                     t"
                     /listShort="ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        134136
                     /Source="Nicolas_upshifts"
                     /id="U97"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.846153846153846"
                     /psig=1
                     /xcortree=1878
                     /SigmaFactorBS="tatggttttaaacgagacccctgtgggtctcgttttttgttt
                     gcttatctttTTCTTGTATAATAGGATCTAtcatattcgaggggttaatatttatgat
                     t"
                     /listShort="ybaC"
                     /listLong="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
     CDS             134171..135127
                     /gene="ybaC"
                     /locus_tag="BSU_01140"
                     /old_locus_tag="BSU01140"
                     /EC_number="3.4.11.5"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative proline iminopeptidase"
                     /protein_id="NP_387995.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01140"
                     /db_xref="EnsemblGenomes-Tr:CAB11890"
                     /db_xref="GOA:P70981"
                     /db_xref="InterPro:IPR002410"
                     /db_xref="InterPro:IPR022742"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG11988"
                     /db_xref="UniProtKB/Swiss-Prot:P70981"
                     /translation="MIPEKKSIAIMKELSIGNTKQMLMINGVDVKNPLLLFLHGGPGT
                     PQIGYVRHYQKELEQYFTVVHWDQRGSGLSYSKRISHHSMTINHFIKDTIQVTQWLLA
                     HFSKSKLYLAGHSWGSILALHVLQQRPDLFYTYYGISQVVNPQDEESTAYQHIREISE
                     SKKASILSFLTRFIGAPPWKQDIQHLIYRFCVELTRGGFTHRHRQSLAVLFQMLTGNE
                     YGVRNMHSFLNGLRFSKKHLTDELYRFNAFTSVPSIKVPCVFISGKHDLIVPAEISKQ
                     YYQELEAPEKRWFQFENSAHTPHIEEPSLFANTLSRHARHHL*"
     gene            134171..135127
                     /gene="ybaC"
                     /locus_tag="BSU_01140"
                     /old_locus_tag="BSU01140"
     promotor_-35    135134..135141
                     /Source="Nicolas_upshift_promotors"
                     /id="U98"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig=1
                     /xcortree=2656
                     /SigmaFactorBS="gcacgacaccatttatgatagatcCTTGATAAataagaaaaa
                     cccCTGTATAATAAAAAAAGTGTgcaaatcatgcatattttaaataagtcttgcaaca
                     t"
                     /listShort="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    135155..135174
                     /Source="Nicolas_upshift_promotors"
                     /id="U98"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig=1
                     /xcortree=2656
                     /SigmaFactorBS="gcacgacaccatttatgatagatcCTTGATAAataagaaaaa
                     cccCTGTATAATAAAAAAAGTGTgcaaatcatgcatattttaaataagtcttgcaaca
                     t"
                     /listShort="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       135170..135363
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_135170_135363"
                     /HighExp="T-1.40H, T-2.40H, T-1.10H, SMM, T-3.40H,
                     T-4.40H, BI, BMM, H2O2, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA, SigWXY,
                     SigA, SigA"
                     /TUlongPSig="1, 1, 0.997, 1, 1, 0.999, 1, 1, 0.947"
                     /label="S55"
     upshifts        135170
                     /Source="Nicolas_upshifts"
                     /id="U98"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig=1
                     /xcortree=2656
                     /SigmaFactorBS="gcacgacaccatttatgatagatcCTTGATAAataagaaaaa
                     cccCTGTATAATAAAAAAAGTGTgcaaatcatgcatattttaaataagtcttgcaaca
                     t"
                     /listShort="S55, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV,
                     rpsC, rplP, rpmC, rpsQ, rplNA, rplX, rplE, rpsNA, rpsH,
                     rplF, rplR, rpsE, rpmD, rplO, secY, adk, mapA, ybzG, infA,
                     rpmJ, rpsM, rpsK, S56, rpoA, rplQ, S57, ybxA, ybaE, ybaF,
                     truA, NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
     CDS             135364..135672
                     /gene="rpsJ"
                     /locus_tag="BSU_01150"
                     /old_locus_tag="BSU01150"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 27964882"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 27964882;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S10 (BS13); transcription
                     antitermination factor"
                     /protein_id="NP_387996.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01150"
                     /db_xref="EnsemblGenomes-Tr:CAB11891"
                     /db_xref="GOA:P21471"
                     /db_xref="InterPro:IPR001848"
                     /db_xref="InterPro:IPR018268"
                     /db_xref="InterPro:IPR027486"
                     /db_xref="InterPro:IPR036838"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19008"
                     /db_xref="UniProtKB/Swiss-Prot:P21471"
                     /translation="MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPT
                     EKSVYTILRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL
                     *"
     gene            135364..135672
                     /gene="rpsJ"
                     /locus_tag="BSU_01150"
                     /old_locus_tag="BSU01150"
     CDS             135712..136341
                     /gene="rplC"
                     /locus_tag="BSU_01160"
                     /old_locus_tag="BSU01160"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17981968, 19154332, 23759864"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17981968,
                     19154332, 23759864; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L3 (BL3)"
                     /protein_id="NP_387997.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01160"
                     /db_xref="EnsemblGenomes-Tr:CAB11892"
                     /db_xref="GOA:P42920"
                     /db_xref="InterPro:IPR000597"
                     /db_xref="InterPro:IPR009000"
                     /db_xref="InterPro:IPR019926"
                     /db_xref="InterPro:IPR019927"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11218"
                     /db_xref="UniProtKB/Swiss-Prot:P42920"
                     /translation="MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAEND
                     GYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIF
                     SAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLL
                     PGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK*"
     gene            135712..136341
                     /gene="rplC"
                     /locus_tag="BSU_01160"
                     /old_locus_tag="BSU01160"
     CDS             136369..136992
                     /gene="rplD"
                     /locus_tag="BSU_01170"
                     /old_locus_tag="BSU01170"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10898684, 12682299,
                     22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L4"
                     /protein_id="NP_387998.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01170"
                     /db_xref="EnsemblGenomes-Tr:CAB11893"
                     /db_xref="GOA:P42921"
                     /db_xref="InterPro:IPR002136"
                     /db_xref="InterPro:IPR013005"
                     /db_xref="InterPro:IPR023574"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11219"
                     /db_xref="UniProtKB/Swiss-Prot:P42921"
                     /translation="MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASL
                     RQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLP
                     KKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADAN
                     EAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA*"
     gene            136369..136992
                     /gene="rplD"
                     /locus_tag="BSU_01170"
                     /old_locus_tag="BSU01170"
     CDS             136992..137279
                     /gene="rplW"
                     /locus_tag="BSU_01180"
                     /old_locus_tag="BSU01180"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17981968, 23002217"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17981968,
                     23002217; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L23"
                     /protein_id="NP_387999.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01180"
                     /db_xref="EnsemblGenomes-Tr:CAB11894"
                     /db_xref="GOA:P42924"
                     /db_xref="InterPro:IPR001014"
                     /db_xref="InterPro:IPR012678"
                     /db_xref="InterPro:IPR013025"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11221"
                     /db_xref="UniProtKB/Swiss-Prot:P42924"
                     /translation="MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVE
                     SIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA*"
     gene            136992..137279
                     /gene="rplW"
                     /locus_tag="BSU_01180"
                     /old_locus_tag="BSU01180"
     CDS             137311..138144
                     /gene="rplB"
                     /locus_tag="BSU_01190"
                     /old_locus_tag="BSU01190"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 23249812, 24637032"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 23249812,
                     24637032; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L2 (BL2)"
                     /protein_id="NP_388000.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01190"
                     /db_xref="EnsemblGenomes-Tr:CAB11895"
                     /db_xref="GOA:P42919"
                     /db_xref="InterPro:IPR002171"
                     /db_xref="InterPro:IPR005880"
                     /db_xref="InterPro:IPR008991"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR014722"
                     /db_xref="InterPro:IPR014726"
                     /db_xref="InterPro:IPR022666"
                     /db_xref="InterPro:IPR022669"
                     /db_xref="InterPro:IPR022671"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11217"
                     /db_xref="UniProtKB/Swiss-Prot:P42919"
                     /translation="MAIKKYKPTSNGRRGMTTSDFAEITTDKPEKSLLAPLHKKGGRN
                     NQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADGEKR
                     YILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGT
                     SAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINIGKAGRSRWKGIRP
                     TVRGSVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTLGFKTRKKKNKSDKFIVRRRKN
                     K*"
     gene            137311..138144
                     /gene="rplB"
                     /locus_tag="BSU_01190"
                     /old_locus_tag="BSU01190"
     downshifts      complement(137447)
                     /Source="Nicolas_upshifts"
                     /id="D49"
                     /incds=1
                     /nref=1
                     /ntot=47
                     /MaxReadThrough="3.39972"
                     /MaxDrop="4.09052"
                     /score="-4.16840603"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U99"
                     /TUdmin=1342
                     /isTUend="FALSE"
     CDS             138202..138480
                     /gene="rpsS"
                     /locus_tag="BSU_01200"
                     /old_locus_tag="BSU01200"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S19 (BS19)"
                     /protein_id="NP_388001.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01200"
                     /db_xref="EnsemblGenomes-Tr:CAB11896"
                     /db_xref="GOA:P21476"
                     /db_xref="InterPro:IPR002222"
                     /db_xref="InterPro:IPR005732"
                     /db_xref="InterPro:IPR020934"
                     /db_xref="InterPro:IPR023575"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19011"
                     /db_xref="UniProtKB/Swiss-Prot:P21476"
                     /translation="MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQF
                     IGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTYKGHASDDKKTRR*"
     gene            138202..138480
                     /gene="rpsS"
                     /locus_tag="BSU_01200"
                     /old_locus_tag="BSU01200"
     CDS             138497..138838
                     /gene="rplV"
                     /locus_tag="BSU_01210"
                     /old_locus_tag="BSU01210"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7928988, 12682299, 23002217"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7928988, 12682299,
                     23002217; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L22 (BL17)"
                     /protein_id="NP_388002.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01210"
                     /db_xref="EnsemblGenomes-Tr:CAB11897"
                     /db_xref="GOA:P42060"
                     /db_xref="InterPro:IPR001063"
                     /db_xref="InterPro:IPR005727"
                     /db_xref="InterPro:IPR018260"
                     /db_xref="InterPro:IPR036394"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11078"
                     /db_xref="UniProtKB/Swiss-Prot:P42060"
                     /translation="MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAAS
                     PIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSH
                     ITIVVSEKKEG*"
     gene            138497..138838
                     /gene="rplV"
                     /locus_tag="BSU_01210"
                     /old_locus_tag="BSU01210"
     CDS             138842..139498
                     /gene="rpsC"
                     /locus_tag="BSU_01220"
                     /old_locus_tag="BSU01220"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299; Product type s:
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S3 (BS3)"
                     /protein_id="NP_388003.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01220"
                     /db_xref="EnsemblGenomes-Tr:CAB11898"
                     /db_xref="GOA:P21465"
                     /db_xref="InterPro:IPR001351"
                     /db_xref="InterPro:IPR004044"
                     /db_xref="InterPro:IPR004087"
                     /db_xref="InterPro:IPR005704"
                     /db_xref="InterPro:IPR009019"
                     /db_xref="InterPro:IPR015946"
                     /db_xref="InterPro:IPR018280"
                     /db_xref="InterPro:IPR036419"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19005"
                     /db_xref="UniProtKB/Swiss-Prot:P21465"
                     /translation="MGQKVNPVGLRIGVIRDWESKWYAGKDYADFLHEDLKIREYISK
                     RLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINI
                     LEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGAD
                     IARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTKKKNEEGGK
                     *"
     gene            138842..139498
                     /gene="rpsC"
                     /locus_tag="BSU_01220"
                     /old_locus_tag="BSU01220"
     downshifts      complement(138855)
                     /Source="Nicolas_upshifts"
                     /id="D50"
                     /incds=0
                     /nref=1
                     /ntot=62
                     /MaxReadThrough="3.68388"
                     /MaxDrop="2.1922"
                     /score="-4.16840603"
                     /energy="-12.8"
                     /TU="U99"
                     /idTUdmin="U99"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     promotor_-10    complement(138936..138940)
                     /Source="Nicolas_upshift_promotors"
                     /id="U99"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.972027972027972"
                     /psig="0.00999000999001"
                     /xcortree=77
                     /SigmaFactorBS="tactttagaaacagaagcgtcagaaaggcgtttgctaatgta
                     ttCACgaatttttaaatcttcGTGCAggaagtcagcgtaatctttaccagcgtaccac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(138943)
                     /Source="Nicolas_upshifts"
                     /id="U99"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.972027972027972"
                     /psig="0.00999000999001"
                     /xcortree=77
                     /SigmaFactorBS="tactttagaaacagaagcgtcagaaaggcgtttgctaatgta
                     ttCACgaatttttaaatcttcGTGCAggaagtcagcgtaatctttaccagcgtaccac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(138957..138959)
                     /Source="Nicolas_upshift_promotors"
                     /id="U99"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.972027972027972"
                     /psig="0.00999000999001"
                     /xcortree=77
                     /SigmaFactorBS="tactttagaaacagaagcgtcagaaaggcgtttgctaatgta
                     ttCACgaatttttaaatcttcGTGCAggaagtcagcgtaatctttaccagcgtaccac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             139500..139934
                     /gene="rplP"
                     /locus_tag="BSU_01230"
                     /old_locus_tag="BSU01230"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 16390447, 24335279"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 16390447,
                     24335279; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L16"
                     /protein_id="NP_388004.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01230"
                     /db_xref="EnsemblGenomes-Tr:CAB11899"
                     /db_xref="GOA:P14577"
                     /db_xref="InterPro:IPR000114"
                     /db_xref="InterPro:IPR016180"
                     /db_xref="InterPro:IPR020798"
                     /db_xref="InterPro:IPR036920"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10755"
                     /db_xref="UniProtKB/Swiss-Prot:P14577"
                     /translation="MLLPKRVKYRREHRGKMRGRAKGGTEVHFGEFGIQALEASWITN
                     RQIEAARIAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKV
                     LFEISGVSEEVAREALRLASHKLPIKTKFVKREEIGGESNES*"
     gene            139500..139934
                     /gene="rplP"
                     /locus_tag="BSU_01230"
                     /old_locus_tag="BSU01230"
     CDS             139924..140124
                     /gene="rpmC"
                     /locus_tag="BSU_01240"
                     /old_locus_tag="BSU01240"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 23002217"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 23002217;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L29"
                     /protein_id="NP_388005.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01240"
                     /db_xref="EnsemblGenomes-Tr:CAB11900"
                     /db_xref="GOA:P12873"
                     /db_xref="InterPro:IPR001854"
                     /db_xref="InterPro:IPR018254"
                     /db_xref="InterPro:IPR036049"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10756"
                     /db_xref="UniProtKB/Swiss-Prot:P12873"
                     /translation="MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENTARIR
                     EVRKAIARMKTVIREREIAANK*"
     gene            139924..140124
                     /gene="rpmC"
                     /locus_tag="BSU_01240"
                     /old_locus_tag="BSU01240"
     CDS             140147..140410
                     /gene="rpsQ"
                     /locus_tag="BSU_01250"
                     /old_locus_tag="BSU01250"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299; Product type s:
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S17 (BS16)"
                     /protein_id="NP_388006.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01250"
                     /db_xref="EnsemblGenomes-Tr:CAB11901"
                     /db_xref="GOA:P12874"
                     /db_xref="InterPro:IPR000266"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR019979"
                     /db_xref="InterPro:IPR019984"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10757"
                     /db_xref="UniProtKB/Swiss-Prot:P12874"
                     /translation="MSERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSK
                     KFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEVVEEAVII*"
     gene            140147..140410
                     /gene="rpsQ"
                     /locus_tag="BSU_01250"
                     /old_locus_tag="BSU01250"
     CDS             140451..140819
                     /gene="rplNA"
                     /locus_tag="BSU_01260"
                     /old_locus_tag="BSU01260"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8722036, 8805509, 12682299, 22829778"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8722036, 8805509,
                     12682299, 22829778; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L14"
                     /protein_id="NP_388007.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01260"
                     /db_xref="EnsemblGenomes-Tr:CAB11902"
                     /db_xref="GOA:P12875"
                     /db_xref="InterPro:IPR000218"
                     /db_xref="InterPro:IPR005745"
                     /db_xref="InterPro:IPR019972"
                     /db_xref="InterPro:IPR036853"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10758"
                     /db_xref="UniProtKB/Swiss-Prot:P12875"
                     /translation="MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVK
                     QATPGGVVKKGEVVKAVIVRTKSGARRSDGSYISFDENACVIIRDDKSPRGTRIFGPV
                     ARELRENNFMKIVSLAPEVI*"
     gene            140451..140819
                     /gene="rplNA"
                     /locus_tag="BSU_01260"
                     /old_locus_tag="BSU01260"
     CDS             140857..141168
                     /gene="rplX"
                     /locus_tag="BSU_01270"
                     /old_locus_tag="BSU01270"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11278078, 12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11278078, 12682299;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L24 (BL23)"
                     /protein_id="NP_388008.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01270"
                     /db_xref="EnsemblGenomes-Tr:CAB11903"
                     /db_xref="GOA:P0CI78"
                     /db_xref="InterPro:IPR003256"
                     /db_xref="InterPro:IPR005824"
                     /db_xref="InterPro:IPR005825"
                     /db_xref="InterPro:IPR008991"
                     /db_xref="InterPro:IPR014722"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10759"
                     /db_xref="UniProtKB/Swiss-Prot:P0CI78"
                     /translation="MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKH
                     SKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVLD
                     K*"
     gene            140857..141168
                     /gene="rplX"
                     /locus_tag="BSU_01270"
                     /old_locus_tag="BSU01270"
     CDS             141195..141734
                     /gene="rplE"
                     /locus_tag="BSU_01280"
                     /old_locus_tag="BSU01280"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L5 (BL6)"
                     /protein_id="NP_388009.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01280"
                     /db_xref="EnsemblGenomes-Tr:CAB11904"
                     /db_xref="GOA:P12877"
                     /db_xref="InterPro:IPR002132"
                     /db_xref="InterPro:IPR020929"
                     /db_xref="InterPro:IPR020930"
                     /db_xref="InterPro:IPR022803"
                     /db_xref="InterPro:IPR031309"
                     /db_xref="InterPro:IPR031310"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10760"
                     /db_xref="UniProtKB/Swiss-Prot:P12877"
                     /translation="MNRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAV
                     QNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDK
                     LISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTA
                     NTDEEARELLTQVGMPFQK*"
     gene            141195..141734
                     /gene="rplE"
                     /locus_tag="BSU_01280"
                     /old_locus_tag="BSU01280"
     CDS             141757..141942
                     /gene="rpsNA"
                     /locus_tag="BSU_01290"
                     /old_locus_tag="BSU01290"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17163968, 19648245, 20208344, 27561249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17163968,
                     19648245, 20208344, 27561249; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S14"
                     /protein_id="NP_388010.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01290"
                     /db_xref="EnsemblGenomes-Tr:CAB11905"
                     /db_xref="GOA:P12878"
                     /db_xref="InterPro:IPR001209"
                     /db_xref="InterPro:IPR018271"
                     /db_xref="InterPro:IPR023053"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10761"
                     /db_xref="UniProtKB/Swiss-Prot:P12878"
                     /translation="MAKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICF
                     RELAYKGQIPGVKKASW*"
     gene            141757..141942
                     /gene="rpsNA"
                     /locus_tag="BSU_01290"
                     /old_locus_tag="BSU01290"
     CDS             141974..142372
                     /gene="rpsH"
                     /locus_tag="BSU_01300"
                     /old_locus_tag="BSU01300"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S8 (BS8)"
                     /protein_id="NP_388011.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01300"
                     /db_xref="EnsemblGenomes-Tr:CAB11906"
                     /db_xref="GOA:P12879"
                     /db_xref="InterPro:IPR000630"
                     /db_xref="InterPro:IPR035987"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10762"
                     /db_xref="UniProtKB/Swiss-Prot:P12879"
                     /translation="MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREG
                     FIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLG
                     IAIISTSQGVLTDKEARAKQAGGEVLAYVW*"
     gene            141974..142372
                     /gene="rpsH"
                     /locus_tag="BSU_01300"
                     /old_locus_tag="BSU01300"
     downshifts      complement(142375)
                     /Source="Nicolas_upshifts"
                     /id="D51"
                     /incds=0
                     /nref=1
                     /ntot=74
                     /MaxReadThrough="2.68318"
                     /MaxDrop="2.55712"
                     /score="5.40276403"
                     /energy="-15.9"
                     /TU="NA"
                     /idTUdmin="U99"
                     /TUdmin="-3586"
                     /isTUend="FALSE"
     CDS             142402..142941
                     /gene="rplF"
                     /locus_tag="BSU_01310"
                     /old_locus_tag="BSU01310"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 25330043; Product
                     type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L6 (BL8)"
                     /protein_id="NP_388012.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01310"
                     /db_xref="EnsemblGenomes-Tr:CAB11907"
                     /db_xref="GOA:P46898"
                     /db_xref="InterPro:IPR000702"
                     /db_xref="InterPro:IPR002358"
                     /db_xref="InterPro:IPR019906"
                     /db_xref="InterPro:IPR020040"
                     /db_xref="InterPro:IPR036789"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11408"
                     /db_xref="UniProtKB/Swiss-Prot:P46898"
                     /translation="MSRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEI
                     KVEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGN
                     KLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKG
                     KGIRYEGEVVRRKEGKSAK*"
     gene            142402..142941
                     /gene="rplF"
                     /locus_tag="BSU_01310"
                     /old_locus_tag="BSU01310"
     CDS             142974..143336
                     /gene="rplR"
                     /locus_tag="BSU_01320"
                     /old_locus_tag="BSU01320"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L18"
                     /protein_id="NP_388013.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01320"
                     /db_xref="EnsemblGenomes-Tr:CAB11908"
                     /db_xref="GOA:P46899"
                     /db_xref="InterPro:IPR004389"
                     /db_xref="InterPro:IPR005484"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11409"
                     /db_xref="UniProtKB/Swiss-Prot:P46899"
                     /translation="MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQI
                     IDDVNGVTLASASTLDKDLNVESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLY
                     HGRVKALADAAREAGLKF*"
     gene            142974..143336
                     /gene="rplR"
                     /locus_tag="BSU_01320"
                     /old_locus_tag="BSU01320"
     CDS             143361..143861
                     /gene="rpsE"
                     /locus_tag="BSU_01330"
                     /old_locus_tag="BSU01330"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:6211592, 12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 6211592, 12682299;
                     Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S5"
                     /protein_id="NP_388014.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01330"
                     /db_xref="EnsemblGenomes-Tr:CAB11909"
                     /db_xref="GOA:P21467"
                     /db_xref="InterPro:IPR000851"
                     /db_xref="InterPro:IPR005324"
                     /db_xref="InterPro:IPR005712"
                     /db_xref="InterPro:IPR013810"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR018192"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10442"
                     /db_xref="UniProtKB/Swiss-Prot:P21467"
                     /translation="MRRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNG
                     HVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPASEG
                     TGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKS
                     VEELLG*"
     gene            143361..143861
                     /gene="rpsE"
                     /locus_tag="BSU_01330"
                     /old_locus_tag="BSU01330"
     CDS             143875..144054
                     /gene="rpmD"
                     /locus_tag="BSU_01340"
                     /old_locus_tag="BSU01340"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299; Product type s :
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L30 (BL27)"
                     /protein_id="NP_388015.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01340"
                     /db_xref="EnsemblGenomes-Tr:CAB11910"
                     /db_xref="GOA:P19947"
                     /db_xref="InterPro:IPR005996"
                     /db_xref="InterPro:IPR016082"
                     /db_xref="InterPro:IPR018038"
                     /db_xref="InterPro:IPR036919"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10443"
                     /db_xref="UniProtKB/Swiss-Prot:P19947"
                     /translation="MAKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIR
                     GMINKVSHLVSVKEQ*"
     gene            143875..144054
                     /gene="rpmD"
                     /locus_tag="BSU_01340"
                     /old_locus_tag="BSU01340"
     CDS             144085..144525
                     /gene="rplO"
                     /locus_tag="BSU_01350"
                     /old_locus_tag="BSU01350"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 15855514, 23002217"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 15855514,
                     23002217; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L15"
                     /protein_id="NP_388016.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01350"
                     /db_xref="EnsemblGenomes-Tr:CAB11911"
                     /db_xref="GOA:P19946"
                     /db_xref="InterPro:IPR001196"
                     /db_xref="InterPro:IPR005749"
                     /db_xref="InterPro:IPR021131"
                     /db_xref="InterPro:IPR030878"
                     /db_xref="InterPro:IPR036227"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10444"
                     /db_xref="UniProtKB/Swiss-Prot:P19946"
                     /translation="MKLHELKPSEGSRKTRNRVGRGIGSGNGKTAGKGHKGQNARSGG
                     GVRPGFEGGQMPLFQRLPKRGFTNINRKEYAVVNLDKLNGFAEGTEVTPELLLETGVI
                     SKLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI*"
     gene            144085..144525
                     /gene="rplO"
                     /locus_tag="BSU_01350"
                     /old_locus_tag="BSU01350"
     CDS             144527..145822
                     /gene="secY"
                     /locus_tag="BSU_01360"
                     /old_locus_tag="BSU01360"
                     /function="16.1: Circulate"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9917412, 15341641, 15849754, 16850406, 23852076,
                     22720735, 27336478"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9917412, 15341641,
                     15849754, 16850406, 23852076, 22720735, 27336478; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit"
                     /protein_id="NP_388017.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01360"
                     /db_xref="EnsemblGenomes-Tr:CAB11912"
                     /db_xref="GOA:P16336"
                     /db_xref="InterPro:IPR002208"
                     /db_xref="InterPro:IPR023201"
                     /db_xref="InterPro:IPR026593"
                     /db_xref="InterPro:IPR030659"
                     /db_xref="SubtiList:BG10445"
                     /db_xref="UniProtKB/Swiss-Prot:P16336"
                     /translation="MFKTISNFMRVSDIRNKIIFTLLMLIVFRIGAFIPVPYVNAEAL
                     QAQSQMGVFDLLNTFGGGALYQFSIFAMGITPYITASIIIQLLQMDVVPKFTEWSKQG
                     EVGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLANGMLIEKSGVSTYLIIALVLTGGT
                     AFLMWLGEQITSHGVGNGISIIIFAGIVSSIPKTIGQIYETQFVGSNDQLFIHIVKVA
                     LLVIAILAVIVGVIFIQQAVRKIAIQYAKGTGRSPAGGGQSTHLPLKVNPAGVIPVIF
                     AVAFLITPRTIASFFGTNDVTKWIQNNFDNTHPVGMAIYVALIIAFTYFYAFVQVNPE
                     QMADNLKKQGGYIPGVRPGKMTQDRITSILYRLTFVGSIFLAVISILPIFFIQFAGLP
                     QSAQIGGTSLLIVVGVALETMKQLESQLVKRNYRGFMKN*"
     gene            144527..145822
                     /gene="secY"
                     /locus_tag="BSU_01360"
                     /old_locus_tag="BSU01360"
     CDS             145877..146530
                     /gene="adk"
                     /locus_tag="BSU_01370"
                     /old_locus_tag="BSU01370"
                     /EC_number="2.7.4.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.7: Manage energy"
                     /experiment="publication(s) with functional evidences,
                     PMID:8061005, 8288548, 9056261, 9715904, 11106368,
                     16452168"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8061005, 8288548,
                     9056261, 9715904, 11106368, 16452168; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="NP_388018.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01370"
                     /db_xref="EnsemblGenomes-Tr:CAB11913"
                     /db_xref="GOA:P16304"
                     /db_xref="InterPro:IPR000850"
                     /db_xref="InterPro:IPR006259"
                     /db_xref="InterPro:IPR007862"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR033690"
                     /db_xref="PDB:1P3J"
                     /db_xref="PDB:2EU8"
                     /db_xref="PDB:2OO7"
                     /db_xref="PDB:2ORI"
                     /db_xref="PDB:2OSB"
                     /db_xref="PDB:2P3S"
                     /db_xref="PDB:2QAJ"
                     /db_xref="PDB:3DKV"
                     /db_xref="PDB:3DL0"
                     /db_xref="PDB:4MKF"
                     /db_xref="PDB:4MKG"
                     /db_xref="PDB:4MKH"
                     /db_xref="PDB:4QBF"
                     /db_xref="PDB:4QBG"
                     /db_xref="PDB:4TYP"
                     /db_xref="PDB:4TYQ"
                     /db_xref="SubtiList:BG10446"
                     /db_xref="UniProtKB/Swiss-Prot:P16304"
                     /translation="MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETP
                     LGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEE
                     YGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR
                     ADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQQDIQDVYADVKDLLGGLKK*
                     "
     gene            145877..146530
                     /gene="adk"
                     /locus_tag="BSU_01370"
                     /old_locus_tag="BSU01370"
     CDS             146527..147273
                     /gene="mapA"
                     /locus_tag="BSU_01380"
                     /old_locus_tag="BSU01380"
                     /EC_number="3.4.11.18"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16207374, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16207374, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine aminopeptidase"
                     /protein_id="NP_388019.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01380"
                     /db_xref="EnsemblGenomes-Tr:CAB11914"
                     /db_xref="GOA:P19994"
                     /db_xref="InterPro:IPR000994"
                     /db_xref="InterPro:IPR001714"
                     /db_xref="InterPro:IPR002467"
                     /db_xref="InterPro:IPR036005"
                     /db_xref="SubtiList:BG10447"
                     /db_xref="UniProtKB/Swiss-Prot:P19994"
                     /translation="MIICKTPRELGIMREAGRIVALTHEELKKHIKPGISTKELDQIA
                     ERFIKKQGAIPSFKGYNGFRGSICVSVNEELVHGIPGSRVLKDGDIISIDIGAKLNGY
                     HGDSAWTYPVGNISDDDKKLLEVTEESLYKGLQEAKPGERLSNISHAIQTYVENEQFS
                     VVREYVGHGVGQDLHEDPQIPHYGPPNKGPRLKPGMVLAIEPMVNAGSRYVKTLADNW
                     TVVTVDGKKCAHFEHTIAITETGFDILTRV*"
     gene            146527..147273
                     /gene="mapA"
                     /locus_tag="BSU_01380"
                     /old_locus_tag="BSU01380"
     CDS             147312..147536
                     /gene="ybzG"
                     /locus_tag="BSU_01389"
                     /old_locus_tag="BSU01389"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17157877; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ribosome binding protein"
                     /protein_id="YP_003097669.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01389"
                     /db_xref="EnsemblGenomes-Tr:CAX52539"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3S8"
                     /translation="MIGQKAWVNIGKTEFILLLVVGILTIINVLTADGEKRTFHSPKK
                     KNINHLTLYDCVSPEVQNSINETGRVTNFF*"
     gene            147312..147536
                     /gene="ybzG"
                     /locus_tag="BSU_01389"
                     /old_locus_tag="BSU01389"
     CDS             147585..147803
                     /gene="infA"
                     /locus_tag="BSU_01390"
                     /old_locus_tag="BSU01390"
                     /function="16.3: Control"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9868784, 20477873, 22720735;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="initiation factor IF-I"
                     /protein_id="NP_388020.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01390"
                     /db_xref="EnsemblGenomes-Tr:CAB11915"
                     /db_xref="GOA:P20458"
                     /db_xref="InterPro:IPR004368"
                     /db_xref="InterPro:IPR006196"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR022967"
                     /db_xref="SubtiList:BG11043"
                     /db_xref="UniProtKB/Swiss-Prot:P20458"
                     /translation="MAKDDVIEVEGTIVETLPNAMFKVELENGHTVLAHVSGKIRMHF
                     IRILPGDKVTVELSPYDLTRGRITYRYK*"
     gene            147585..147803
                     /gene="infA"
                     /locus_tag="BSU_01390"
                     /old_locus_tag="BSU01390"
     CDS             147837..147950
                     /gene="rpmJ"
                     /locus_tag="BSU_01400"
                     /old_locus_tag="BSU01400"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1783905, 23002217, 24335279"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1783905, 23002217,
                     24335279; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L36 (ribosomal protein B)"
                     /protein_id="NP_388021.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01400"
                     /db_xref="EnsemblGenomes-Tr:CAB11916"
                     /db_xref="GOA:P20278"
                     /db_xref="InterPro:IPR000473"
                     /db_xref="InterPro:IPR035977"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11042"
                     /db_xref="UniProtKB/Swiss-Prot:P20278"
                     /translation="MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG*"
     gene            147837..147950
                     /gene="rpmJ"
                     /locus_tag="BSU_01400"
                     /old_locus_tag="BSU01400"
     CDS             147973..148338
                     /gene="rpsM"
                     /locus_tag="BSU_01410"
                     /old_locus_tag="BSU01410"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 22720735; Product
                     type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S13"
                     /protein_id="NP_388022.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01410"
                     /db_xref="EnsemblGenomes-Tr:CAB11917"
                     /db_xref="GOA:P20282"
                     /db_xref="InterPro:IPR001892"
                     /db_xref="InterPro:IPR010979"
                     /db_xref="InterPro:IPR018269"
                     /db_xref="InterPro:IPR019980"
                     /db_xref="InterPro:IPR027437"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10730"
                     /db_xref="UniProtKB/Swiss-Prot:P20282"
                     /translation="MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTR
                     VRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNS
                     KNNARTRKGPRRTVANKKK*"
     gene            147973..148338
                     /gene="rpsM"
                     /locus_tag="BSU_01410"
                     /old_locus_tag="BSU01410"
     CDS             148359..148754
                     /gene="rpsK"
                     /locus_tag="BSU_01420"
                     /old_locus_tag="BSU01420"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10217780, 12682299, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10217780, 12682299,
                     22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S11 (BS11)"
                     /protein_id="NP_388023.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01420"
                     /db_xref="EnsemblGenomes-Tr:CAB11918"
                     /db_xref="GOA:P04969"
                     /db_xref="InterPro:IPR001971"
                     /db_xref="InterPro:IPR018102"
                     /db_xref="InterPro:IPR019981"
                     /db_xref="InterPro:IPR036967"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG10731"
                     /db_xref="UniProtKB/Swiss-Prot:P04969"
                     /translation="MAAARKSNTRKRRVKKNIESGIAHIRSTFNNTIVTITDTHGNAI
                     SWSSAGALGFRGSRKSTPFAAQMAAETAAKGSIEHGLKTLEVTVKGPGSGREAAIRAL
                     QAAGLEVTAIRDVTPVPHNGCRPPKRRRV*"
     gene            148359..148754
                     /gene="rpsK"
                     /locus_tag="BSU_01420"
                     /old_locus_tag="BSU01420"
     S_feature       148755..148930
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_148755_148930"
                     /HighExp="G135, dia5, Lbexp, S0, aero, dia0, T-4.40H,
                     G150, Paraq, C30"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA, SigWXY,
                     SigA, SigA"
                     /TUlongPSig="1, 1, 0.997, 1, 1, 0.999, 1, 1, 0.947"
                     /label="S56"
     CDS             148931..149875
                     /gene="rpoA"
                     /locus_tag="BSU_01430"
                     /old_locus_tag="BSU01430"
                     /EC_number="2.7.7.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1484484, 6811591, 9594570, 10972808, 12682299,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1484484, 6811591,
                     9594570, 10972808, 12682299, 22720735; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase (alpha subunit)"
                     /protein_id="NP_388024.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01430"
                     /db_xref="EnsemblGenomes-Tr:CAB11919"
                     /db_xref="GOA:P20429"
                     /db_xref="InterPro:IPR011260"
                     /db_xref="InterPro:IPR011262"
                     /db_xref="InterPro:IPR011263"
                     /db_xref="InterPro:IPR011773"
                     /db_xref="InterPro:IPR036603"
                     /db_xref="InterPro:IPR036643"
                     /db_xref="PDB:1Z3E"
                     /db_xref="PDB:3GFK"
                     /db_xref="PDB:3IHQ"
                     /db_xref="SubtiList:BG10732"
                     /db_xref="UniProtKB/Swiss-Prot:P20429"
                     /translation="MIEIEKPKIETVEISDDAKFGKFVVEPLERGYGTTLGNSLRRIL
                     LSSLPGAAVTSIQIDGVLHEFSTIEGVVEDVTTIILHIKKLALKIYSDEEKTLEIDVQ
                     GEGTVTAADITHDSDVEILNPDLHIATLGENASFRVRLTAQRGRGYTPADANKRDDQP
                     IGVIPIDSIYTPVSRVSYQVENTRVGQVANYDKLTLDVWTDGSTGPKEAIALGSKILT
                     EHLNIFVGLTDEAQHAEIMVEKEEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQE
                     LANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKDD*"
     gene            148931..149875
                     /gene="rpoA"
                     /locus_tag="BSU_01430"
                     /old_locus_tag="BSU01430"
     CDS             149953..150315
                     /gene="rplQ"
                     /locus_tag="BSU_01440"
                     /old_locus_tag="BSU01440"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:6801428, 10717392, 12682299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 6801428, 10717392,
                     12682299; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L17 (BL15)"
                     /protein_id="NP_388025.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01440"
                     /db_xref="EnsemblGenomes-Tr:CAB11920"
                     /db_xref="GOA:P20277"
                     /db_xref="InterPro:IPR000456"
                     /db_xref="InterPro:IPR036373"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11041"
                     /db_xref="UniProtKB/Swiss-Prot:P20277"
                     /translation="MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKELRSVV
                     EKMITLGKRGDLHARRQAAAYIRNEVANEENNQDALQKLFSDIATRYEERQGGYTRIM
                     KLGPRRGDGAPMAIIELV*"
     gene            149953..150315
                     /gene="rplQ"
                     /locus_tag="BSU_01440"
                     /old_locus_tag="BSU01440"
     downshifts      150317
                     /Source="Nicolas_upshifts"
                     /id="D52"
                     /incds=0
                     /nref=171
                     /ntot=259
                     /MaxReadThrough="7.50771"
                     /MaxDrop="5.4374"
                     /score="2.32634618"
                     /energy="-10.5"
                     /TU="U98"
                     /idTUdmin="U98"
                     /TUdmin="-5577"
                     /isTUend="FALSE"
     S_feature       150362..150442
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_150362_150442"
                     /HighExp="Cold, G180, G135, G150, H2O2, S0, C30, Oxctl,
                     Paraq, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA, SigWXY,
                     SigA, SigA"
                     /TUlongPSig="1, 1, 0.997, 1, 1, 0.999, 1, 1, 0.947"
                     /label="S57"
     CDS             150443..151288
                     /gene="ecfA"
                     /locus_tag="BSU_01450"
                     /old_locus_tag="BSU01450"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12110480, 21135102,
                     26052893; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="energizing coupling factor of ABC influx
                     transporter (ATP-binding protein)"
                     /protein_id="NP_388026.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01450"
                     /db_xref="EnsemblGenomes-Tr:CAB11921"
                     /db_xref="GOA:P40735"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR015856"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR030947"
                     /db_xref="SubtiList:BG11067"
                     /db_xref="UniProtKB/Swiss-Prot:P40735"
                     /translation="MNQNQLISVEDIVFRYRKDAERRALDGVSLQVYEGEWLAIVGHN
                     GSGKSTLARALNGLILPESGDIEVAGIQLTEESVWEVRKKIGMVFQNPDNQFVGTTVR
                     DDVAFGLENNGVPREEMIERVDWAVKQVNMQDFLDQEPHHLSGGQKQRVAIAGVIAAR
                     PDIIILDEATSMLDPIGREEVLETVRHLKEQGMATVISITHDLNEAAKADRIIVMNGG
                     KKYAEGPPEEIFKLNKELVRIGLDLPFSFQLSQLLRENGLALEENHLTQEGLVKELWT
                     LQSKM*"
     gene            150443..151288
                     /gene="ecfA"
                     /locus_tag="BSU_01450"
                     /old_locus_tag="BSU01450"
     CDS             151303..152133
                     /gene="ecfAB"
                     /locus_tag="BSU_01460"
                     /old_locus_tag="BSU01460"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12110480, 21135102, 26052893"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12110480, 21135102,
                     26052893; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="energizing coupling factor of ABC influx
                     transporter (ATP-binding protein)"
                     /protein_id="NP_388027.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01460"
                     /db_xref="EnsemblGenomes-Tr:CAB11922"
                     /db_xref="GOA:P70970"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR015856"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR030946"
                     /db_xref="SubtiList:BG11989"
                     /db_xref="UniProtKB/Swiss-Prot:P70970"
                     /translation="MKTPFERLALYDINASIKEGSYVAVIGHTGSGKSTLLQHLNGLL
                     KPTKGQISLGSTVIQAGKKNKDLKKLRKKVGIVFQFPEHQLFEETVLKDISFGPMNFG
                     VKKEDAEQKAREMLQLVGLSEELLDRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPT
                     AGLDPRGRKEIMDMFYELHQRGNLTTILVTHSMEDAAAYADEMIVMHKGTIQASGSPR
                     DLFLKGEEMAGWGLDLPETIKFQRHLEAALGVRFNEPMLTIEDAAAEIRALFQGEKTL
                     *"
     gene            151303..152133
                     /gene="ecfAB"
                     /locus_tag="BSU_01460"
                     /old_locus_tag="BSU01460"
     CDS             152130..152927
                     /gene="ecfT"
                     /locus_tag="BSU_01470"
                     /old_locus_tag="BSU01470"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16850406,
                     18931129, 21135102, 26052893; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the influx ECF transporters"
                     /protein_id="NP_388028.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01470"
                     /db_xref="EnsemblGenomes-Tr:CAB11923"
                     /db_xref="GOA:P70972"
                     /db_xref="InterPro:IPR003339"
                     /db_xref="InterPro:IPR024919"
                     /db_xref="SubtiList:BG11990"
                     /db_xref="UniProtKB/Swiss-Prot:P70972"
                     /translation="MMDSMIIGKYVPGTSLVHRLDPRTKLITIFLFVCIVFLANNVQT
                     YALLGLFTIGVVSLTRVPFSFLMKGLKPIIWIVLFTFLLHILMTHEGPIIFQIGFFKV
                     YEGGLVQGIFISLRFVYLILITTLLTLTTTPIEITDGMEQLLNPLKKLKLPVHELALM
                     MSISLRFIPTLMEETDKIMKAQMARGVDFTSGPVKERVKAIVPLLVPLFVSAFKRAEE
                     LAVAMEARGYQGGEGRTKYRKLVWTGKDTSVIVSLIVLAALLFFLRA*"
     gene            152130..152927
                     /gene="ecfT"
                     /locus_tag="BSU_01470"
                     /old_locus_tag="BSU01470"
     CDS             152937..153680
                     /gene="truA"
                     /locus_tag="BSU_01480"
                     /old_locus_tag="BSU01480"
                     /EC_number="5.4.99.12"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10529181, 15353568,
                     17114947, 17466622; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine (38-40) synthase"
                     /protein_id="NP_388029.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01480"
                     /db_xref="EnsemblGenomes-Tr:CAB11924"
                     /db_xref="GOA:P70973"
                     /db_xref="InterPro:IPR001406"
                     /db_xref="InterPro:IPR020095"
                     /db_xref="InterPro:IPR020097"
                     /db_xref="InterPro:IPR020103"
                     /db_xref="SubtiList:BG11992"
                     /db_xref="UniProtKB/Swiss-Prot:P70973"
                     /translation="MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRI
                     PVVSSGRTDSGVHAAGQVIHFDTPLSIPAERWPYALNALLPDDIAVKQAEIADDGFHA
                     RFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAA
                     KTEVQDKVRTIYELDWTETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVK
                     SMLEAKDREAAGRTAPGHGLYLWNVYYDN*"
     gene            152937..153680
                     /gene="truA"
                     /locus_tag="BSU_01480"
                     /old_locus_tag="BSU01480"
     S_feature       complement(153039..153507)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_153039_153507_c"
                     /HighExp="S6, S8, S7, C30, G135, BT, S5, C90, M/G, Pyr"
                     /AntisenseName="truA"
                     /AntisenseCor="-0.30232258010971202"
                     /AntisenseRegPval="-6.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S58"
     promotor_-35    153172..153177
                     /Source="Nicolas_upshift_promotors"
                     /id="U100"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="Sig-"
                     /pcomp="0.478521478521479"
                     /psig="0.478521478521479"
                     /xcortree=2469
                     /SigmaFactorBS="cggctgagagatggccatatgCCTTAAatgcactgcttccgG
                     ACGATATCGCAGTCAAAcaggcagaaattgcggatgatgggttccatgcacgatttag
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    153192..153209
                     /Source="Nicolas_upshift_promotors"
                     /id="U100"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="Sig-"
                     /pcomp="0.478521478521479"
                     /psig="0.478521478521479"
                     /xcortree=2469
                     /SigmaFactorBS="cggctgagagatggccatatgCCTTAAatgcactgcttccgG
                     ACGATATCGCAGTCAAAcaggcagaaattgcggatgatgggttccatgcacgatttag
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        153211
                     /Source="Nicolas_upshifts"
                     /id="U100"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="Sig-"
                     /pcomp="0.478521478521479"
                     /psig="0.478521478521479"
                     /xcortree=2469
                     /SigmaFactorBS="cggctgagagatggccatatgCCTTAAatgcactgcttccgG
                     ACGATATCGCAGTCAAAcaggcagaaattgcggatgatgggttccatgcacgatttag
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(153507..153526)
                     /Source="Nicolas_upshift_promotors"
                     /id="U101"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1250
                     /SigmaFactorBS="ttcacctcatcgggagaaatttttccaatacctgcatcaagC
                     AAAGTACCCgcaataattctgACCATATTATATAAGAAACCgctgcctgtgatccgca
                     t"
                     /listShort="S58"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(153529)
                     /Source="Nicolas_upshifts"
                     /id="U101"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1250
                     /SigmaFactorBS="ttcacctcatcgggagaaatttttccaatacctgcatcaagC
                     AAAGTACCCgcaataattctgACCATATTATATAAGAAACCgctgcctgtgatccgca
                     t"
                     /listShort="S58"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(153539..153548)
                     /Source="Nicolas_upshift_promotors"
                     /id="U101"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1250
                     /SigmaFactorBS="ttcacctcatcgggagaaatttttccaatacctgcatcaagC
                     AAAGTACCCgcaataattctgACCATATTATATAAGAAACCgctgcctgtgatccgca
                     t"
                     /listShort="S58"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    153700..153706
                     /Source="Nicolas_upshift_promotors"
                     /id="U102"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2644
                     /SigmaFactorBS="ttactatgacaactaaaccaggtgtataatattttCTTGACA
                     gagtctgcataaagTTATAAGATATCATATGGTAtgtatttcaaccccacgataagcc
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    153721..153740
                     /Source="Nicolas_upshift_promotors"
                     /id="U102"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2644
                     /SigmaFactorBS="ttactatgacaactaaaccaggtgtataatattttCTTGACA
                     gagtctgcataaagTTATAAGATATCATATGGTAtgtatttcaaccccacgataagcc
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        153725
                     /Source="Nicolas_upshifts"
                     /id="U102"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2644
                     /SigmaFactorBS="ttactatgacaactaaaccaggtgtataatattttCTTGACA
                     gagtctgcataaagTTATAAGATATCATATGGTAtgtatttcaaccccacgataagcc
                     c"
                     /listShort="NA, rplM, rpsI, S59, ybaJ"
                     /GFF_Attribute="listLong"
     misc_RNA        153737..153793
                     /gene="ldlM"
                     /locus_tag="BSU_misc_RNA_4"
                     /product="putative L13_leader"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type n: RNA"
     gene            153737..153793
                     /gene="ldlM"
                     /locus_tag="BSU_misc_RNA_4"
     CDS             153842..154279
                     /gene="rplM"
                     /locus_tag="BSU_01490"
                     /old_locus_tag="BSU01490"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10781545, 12682299, 23504016, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10781545, 12682299,
                     23504016, 22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L13"
                     /protein_id="NP_388030.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01490"
                     /db_xref="EnsemblGenomes-Tr:CAB11925"
                     /db_xref="GOA:P70974"
                     /db_xref="InterPro:IPR005822"
                     /db_xref="InterPro:IPR005823"
                     /db_xref="InterPro:IPR023563"
                     /db_xref="InterPro:IPR036899"
                     /db_xref="PDB:3J3V"
                     /db_xref="PDB:3J3W"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG11970"
                     /db_xref="UniProtKB/Swiss-Prot:P70974"
                     /translation="MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPT
                     YTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKML
                     ELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG*"
     gene            153842..154279
                     /gene="rplM"
                     /locus_tag="BSU_01490"
                     /old_locus_tag="BSU01490"
     CDS             154300..154692
                     /gene="rpsI"
                     /locus_tag="BSU_01500"
                     /old_locus_tag="BSU01500"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 19653700,
                     22720735; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S9"
                     /protein_id="NP_388031.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01500"
                     /db_xref="EnsemblGenomes-Tr:CAB11926"
                     /db_xref="GOA:P21470"
                     /db_xref="InterPro:IPR000754"
                     /db_xref="InterPro:IPR014721"
                     /db_xref="InterPro:IPR020568"
                     /db_xref="InterPro:IPR020574"
                     /db_xref="InterPro:IPR023035"
                     /db_xref="PDB:3J9W"
                     /db_xref="PDB:5NJT"
                     /db_xref="SubtiList:BG19007"
                     /db_xref="UniProtKB/Swiss-Prot:P21470"
                     /translation="MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAAL
                     IEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAG
                     LLTRDARMKERKKYGLKGARRAPQFSKR*"
     gene            154300..154692
                     /gene="rpsI"
                     /locus_tag="BSU_01500"
                     /old_locus_tag="BSU01500"
     downshifts      154667
                     /Source="Nicolas_upshifts"
                     /id="D53"
                     /incds=0
                     /nref=262
                     /ntot=282
                     /MaxReadThrough="4.65387"
                     /MaxDrop="8.11906"
                     /score="30.5093496"
                     /energy="-13.3"
                     /TU="U98,U100,U102"
                     /idTUdmin="U98"
                     /TUdmin="-1227"
                     /isTUend="FALSE"
     promotor_-35    154809..154816
                     /Source="Nicolas_upshift_promotors"
                     /id="U103"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.97002997002997"
                     /psig="0.999000999001"
                     /xcortree=2051
                     /SigmaFactorBS="ctgaatggacgcttgacggggttaagcaaatTGTTTGTTtat
                     aaacggtctcTTTGTAATAATCATGGTAGAtttcattcttattcaattggaagttcgg
                     t"
                     /listShort="S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    154830..154849
                     /Source="Nicolas_upshift_promotors"
                     /id="U103"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.97002997002997"
                     /psig="0.999000999001"
                     /xcortree=2051
                     /SigmaFactorBS="ctgaatggacgcttgacggggttaagcaaatTGTTTGTTtat
                     aaacggtctcTTTGTAATAATCATGGTAGAtttcattcttattcaattggaagttcgg
                     t"
                     /listShort="S59, ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       154838..155119
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_154838_155119"
                     /HighExp="H2O2, G180, G135, Paraq, Diami, dia15, Oxctl,
                     Cold, Heat, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, Sig-, SigA"
                     /TUshortPSig="0.999, 1, 0.479, 1"
                     /TUlongSig="SigA, SigA, SigA, SigA, SigA, SigA, SigWXY,
                     SigA, SigA"
                     /TUlongPSig="1, 1, 0.997, 1, 1, 0.999, 1, 1, 0.947"
                     /label="S59"
     upshifts        154838
                     /Source="Nicolas_upshifts"
                     /id="U103"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.97002997002997"
                     /psig="0.999000999001"
                     /xcortree=2051
                     /SigmaFactorBS="ctgaatggacgcttgacggggttaagcaaatTGTTTGTTtat
                     aaacggtctcTTTGTAATAATCATGGTAGAtttcattcttattcaattggaagttcgg
                     t"
                     /listShort="S59, ybaJ"
                     /GFF_Attribute="listLong"
     misc_feature    155118..155137
                     /Source="Nicolas_upshift_promotors"
                     /id="U104"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.804195804195804"
                     /xcortree=3216
                     /SigmaFactorBS="gtttttatgaacttttttctaaatatgcaaagggaaagcgat
                     atcaatctagaaataTTTGTTATACTCTATACATTaaagtaaggagaagattcatgaa
                     t"
                     /listShort="ybaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        155121
                     /Source="Nicolas_upshifts"
                     /id="U104"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.804195804195804"
                     /xcortree=3216
                     /SigmaFactorBS="gtttttatgaacttttttctaaatatgcaaagggaaagcgat
                     atcaatctagaaataTTTGTTATACTCTATACATTaaagtaaggagaagattcatgaa
                     t"
                     /listShort="ybaJ"
                     /GFF_Attribute="listLong"
     CDS             155156..155923
                     /gene="ybaJ"
                     /locus_tag="BSU_01510"
                     /old_locus_tag="BSU01510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26582911; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative methyltransferase"
                     /protein_id="NP_388032.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01510"
                     /db_xref="EnsemblGenomes-Tr:CAB11927"
                     /db_xref="GOA:P70976"
                     /db_xref="InterPro:IPR013216"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG11994"
                     /db_xref="UniProtKB/Swiss-Prot:P70976"
                     /translation="MNALVAHNSKAWDKKVETGNEWTVAVEQQVIEQAKKGNWDIRVT
                     PMKDVPKDWFPPIKGLKVLCLASGGGQQGPVLAAAGADVTVLDNSEKQLNQDRMIAER
                     DGLTIHTVKGSMDDLSVFNDESFDVIVHPVANVFVENVLPVWKEAYRVLKRNGILISG
                     FVNPVVFLFDTELEQQGVLKVKHSIPYADPEDLPKHKVKKLIENNEALEFGHSLEDQI
                     KGQIDAGFIVTGFYEDKGGFVLDQYIHTYSATRSVKV*"
     gene            155156..155923
                     /gene="ybaJ"
                     /locus_tag="BSU_01510"
                     /old_locus_tag="BSU01510"
     downshifts      155914
                     /Source="Nicolas_upshifts"
                     /id="D54"
                     /incds=0
                     /nref=215
                     /ntot=251
                     /MaxReadThrough="2.69346"
                     /MaxDrop="6.09641"
                     /score="4.42269359"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U100"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     promotor_-35    156053..156059
                     /Source="Nicolas_upshift_promotors"
                     /id="U105"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=864
                     /SigmaFactorBS="ccttcatttgggcgaatttccaaccgaattcgGGCATTGttt
                     catcatccaaaCCTCAAAATAATcggtaaaaggagagtgaatttatatggcagaagta
                     c"
                     /listShort="ybaK, cwlD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    156074..156085
                     /Source="Nicolas_upshift_promotors"
                     /id="U105"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=864
                     /SigmaFactorBS="ccttcatttgggcgaatttccaaccgaattcgGGCATTGttt
                     catcatccaaaCCTCAAAATAATcggtaaaaggagagtgaatttatatggcagaagta
                     c"
                     /listShort="ybaK, cwlD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        156081
                     /Source="Nicolas_upshifts"
                     /id="U105"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=864
                     /SigmaFactorBS="ccttcatttgggcgaatttccaaccgaattcgGGCATTGttt
                     catcatccaaaCCTCAAAATAATcggtaaaaggagagtgaatttatatggcagaagta
                     c"
                     /listShort="ybaK, cwlD"
                     /GFF_Attribute="listLong"
     CDS             156109..156552
                     /gene="ybaK"
                     /locus_tag="BSU_01520"
                     /old_locus_tag="BSU01520"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 14679227, 16267290"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388033.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01520"
                     /db_xref="EnsemblGenomes-Tr:CAB11928"
                     /db_xref="GOA:P50862"
                     /db_xref="InterPro:IPR019667"
                     /db_xref="SubtiList:BG11503"
                     /db_xref="UniProtKB/Swiss-Prot:P50862"
                     /translation="MAEVLSFMDVKRQKDFELEKNLLKELSLRQIIQSVKDCLEPLFP
                     FLHDERDIITEGCIDFAIEAYLLGGRFGIFGYYGESMQSISARSAREEEELRMEFFDY
                     LYNWIHEQYATFDKNTVYEAARKFIKDWWTAGFVQREKQCKLRMR*"
     gene            156109..156552
                     /gene="ybaK"
                     /locus_tag="BSU_01520"
                     /old_locus_tag="BSU01520"
     promotor_-35    156552..156557
                     /Source="Nicolas_upshift_promotors"
                     /id="U106"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=973
                     /SigmaFactorBS="gttcaaagagaaaaacagtgtaagcttcgcatgcggtaATCA
                     TAtttcccgaccctgtcCCATAGTTATGTAATAACGgacaagcgggaggggaagggat
                     g"
                     /listShort="cwlD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    156573..156591
                     /Source="Nicolas_upshift_promotors"
                     /id="U106"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=973
                     /SigmaFactorBS="gttcaaagagaaaaacagtgtaagcttcgcatgcggtaATCA
                     TAtttcccgaccctgtcCCATAGTTATGTAATAACGgacaagcgggaggggaagggat
                     g"
                     /listShort="cwlD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        156574
                     /Source="Nicolas_upshifts"
                     /id="U106"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=973
                     /SigmaFactorBS="gttcaaagagaaaaacagtgtaagcttcgcatgcggtaATCA
                     TAtttcccgaccctgtcCCATAGTTATGTAATAACGgacaagcgggaggggaagggat
                     g"
                     /listShort="cwlD"
                     /GFF_Attribute="listLong"
     CDS             156612..157325
                     /gene="cwlD"
                     /locus_tag="BSU_01530"
                     /old_locus_tag="BSU01530"
                     /EC_number="3.5.1.28"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:14679227, 16267290"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14679227, 16267290;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="NP_388034.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01530"
                     /db_xref="EnsemblGenomes-Tr:CAB11929"
                     /db_xref="GOA:P50864"
                     /db_xref="InterPro:IPR002508"
                     /db_xref="InterPro:IPR014234"
                     /db_xref="SubtiList:BG11514"
                     /db_xref="UniProtKB/Swiss-Prot:P50864"
                     /translation="MRKKLKWLSFLLGFIILLFLFKYQFSNNDSWKPWSLPLSGKIIY
                     LDPGHGGPDGGAVGGKLLEKDVTLEVAFRVRDYLQEQGALVIMTRESDTDLAPEGTKG
                     YSRRKAEDLRQRVKLINHSEAELYISIHLNAIPSQKWSGAQSFYYGKYAENEKVAKYI
                     QDELRRNLENTTRKAKRIHGIYLMQNVTKPGALIEVGFLSNPSEATLLGKPKYQDKVA
                     SSIYKGILRYFTEKGDPPE*"
     gene            156612..157325
                     /gene="cwlD"
                     /locus_tag="BSU_01530"
                     /old_locus_tag="BSU01530"
     upshifts        157370
                     /Source="Nicolas_upshifts"
                     /id="U107"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.965034965034965"
                     /psig="0.998001998001998"
                     /xcortree=3187
                     /SigmaFactorBS="agaccctccggagtaatggagggttttcttgtggttctaagc
                     ataagacacccgccatttatgTATGATATAATAATAATTGTaaacgaatacacaaaag
                     g"
                     /listShort="salA, S61, kbaA, S63, S64, rrnI-16S"
                     /GFF_Attribute="listLong"
     misc_feature    157373..157392
                     /Source="Nicolas_upshift_promotors"
                     /id="U107"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.965034965034965"
                     /psig="0.998001998001998"
                     /xcortree=3187
                     /SigmaFactorBS="agaccctccggagtaatggagggttttcttgtggttctaagc
                     ataagacacccgccatttatgTATGATATAATAATAATTGTaaacgaatacacaaaag
                     g"
                     /listShort="salA, S61, kbaA, S63, S64, rrnI-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             157421..158479
                     /gene="salA"
                     /locus_tag="BSU_01540"
                     /old_locus_tag="BSU01540"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11790741, 15126467, 26094643"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11790741, 15126467,
                     26094643; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphorylation-dependent (Y327)
                     transcriptionalregulator"
                     /protein_id="NP_388035.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01540"
                     /db_xref="EnsemblGenomes-Tr:CAB11930"
                     /db_xref="GOA:P50863"
                     /db_xref="InterPro:IPR000808"
                     /db_xref="InterPro:IPR019591"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR033756"
                     /db_xref="InterPro:IPR034904"
                     /db_xref="SubtiList:BG11494"
                     /db_xref="UniProtKB/Swiss-Prot:P50863"
                     /translation="MIREDEVRKLVGEMREPFLQRPLGELDAVKEIKIKPEKRHISVK
                     VALAKTGTAEQMQIQQEIVNVLKGAGAETVGLRFEELPEETVAKFRAPSAEKKTLLNM
                     DNPPVFLAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVRP
                     TIEGEKLLPVERFGVKVMSMGFFVEENAPVVWRGPMLGKMLNNFFHEVEWGEVDYIVL
                     DLPPGTGDVALDVHTMLPSCKEIIVSTPHPTAAFVAARAGSMAIKTDHEVVGVIENMA
                     YYESAKTGEREYVFGKGGGDKLAEELNVPLLGRIPLKQPDWDKDQFAPSVYDENHPIG
                     EIYQDIAKKIDAKMSVQV*"
     gene            157421..158479
                     /gene="salA"
                     /locus_tag="BSU_01540"
                     /old_locus_tag="BSU01540"
     S_feature       complement(158050..158514)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_158050_158514_c"
                     /HighExp="S8, S7, S6, S5, C30, S4, C90, nit, ferm, Gly"
                     /AntisenseName="salA"
                     /AntisenseCor="-0.104183954485248"
                     /AntisenseRegPval="-1.1000000000000001"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S60"
     downshifts      158465
                     /Source="Nicolas_upshifts"
                     /id="D55"
                     /incds=0
                     /nref=29
                     /ntot=155
                     /MaxReadThrough="5.44939"
                     /MaxDrop="4.18382"
                     /score="-4.46878413"
                     /energy="-9.1"
                     /TU="U107"
                     /idTUdmin="U106"
                     /TUdmin=1185
                     /isTUend="FALSE"
     S_feature       158510..159181
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_158510_159181"
                     /HighExp="Lbtran, H2O2, Cold, Lbstat, dia5, M40t45, M0t90,
                     M40t90, T0.30H, S1"
                     /AntisenseName="gerD"
                     /AntisenseCor="-0.24235509346425901"
                     /AntisenseRegPval="-4.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S61"
     CDS             complement(158515..159072)
                     /gene="gerD"
                     /locus_tag="BSU_01550"
                     /old_locus_tag="BSU01550"
                     /function="16.13: Shape"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17122337, 10618233, 10376819, 24530795"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17122337, 10618233,
                     10376819, 24530795; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein factor mediating clustering of
                     germination proteins"
                     /protein_id="NP_388036.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01550"
                     /db_xref="EnsemblGenomes-Tr:CAB11931"
                     /db_xref="GOA:P16450"
                     /db_xref="SubtiList:BG10644"
                     /db_xref="UniProtKB/Swiss-Prot:P16450"
                     /translation="MSKAKTLLMSCFLLLSVTACAPKDQAADMDYDQTKKMVVDILKT
                     DDGKKAIKELLNDDAMNEALVIDQDAIKGTIEKTLTSKKGEEFWKNIFEDTDFAEGFA
                     KTLQTEHEKVIKKLMKDPDYQKMLMSVMQDPGMDKKYSQLAKSQEFRSYLEEVINETL
                     SSPLYKKQFEDELKKAAKDTAKESE*"
     gene            complement(158515..159072)
                     /gene="gerD"
                     /locus_tag="BSU_01550"
                     /old_locus_tag="BSU01550"
     promotor_-10    complement(159104..159115)
                     /Source="Nicolas_upshift_promotors"
                     /id="U108"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=925
                     /SigmaFactorBS="tattcatcccctcaaaaatcgcgaacagcgatattttgttaT
                     GTATAAttccaaacagatgAATCATATTAAAggtaagacaagtatgtgaaaggagctt
                     a"
                     /listShort="gerD, S60"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(159116)
                     /Source="Nicolas_upshifts"
                     /id="U108"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=925
                     /SigmaFactorBS="tattcatcccctcaaaaatcgcgaacagcgatattttgttaT
                     GTATAAttccaaacagatgAATCATATTAAAggtaagacaagtatgtgaaaggagctt
                     a"
                     /listShort="gerD, S60"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(159129..159135)
                     /Source="Nicolas_upshift_promotors"
                     /id="U108"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=925
                     /SigmaFactorBS="tattcatcccctcaaaaatcgcgaacagcgatattttgttaT
                     GTATAAttccaaacagatgAATCATATTAAAggtaagacaagtatgtgaaaggagctt
                     a"
                     /listShort="gerD, S60"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(159149..159778)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_159149_159778_c"
                     /HighExp="S3, T5.0H, S4, S8, M9-stat, T4.0H, T3.30H, S7,
                     T3.0H, S6"
                     /AntisenseName="kbaA"
                     /AntisenseCor="7.9344921760152495E-2"
                     /AntisenseRegPval="-0.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S62"
     CDS             159182..159778
                     /gene="kbaA"
                     /locus_tag="BSU_01560"
                     /old_locus_tag="BSU01560"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8576055, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8576055, 15849754,
                     16850406; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein involved in activation
                     ofthe KinB signaling pathway to sporulation"
                     /protein_id="NP_388037.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01560"
                     /db_xref="EnsemblGenomes-Tr:CAB11932"
                     /db_xref="GOA:P16449"
                     /db_xref="InterPro:IPR024164"
                     /db_xref="SubtiList:BG10643"
                     /db_xref="UniProtKB/Swiss-Prot:P16449"
                     /translation="MKSRGLVRFFFSILAVGALITSIVGFALKWGEYRGLFLTFEAGQ
                     IFSVLFWFIGVGMIFSVISQMGFFVFLTVHRFALEILRSSSLWNLLQLFFILFVAFDL
                     MYVRFLFFGESGESLAGYAWLPVFLLIFGVITAYIKQKQSSKKTFVSSLFLMVVITAL
                     EWFPALRVNDEDWLYLMLFPLMACNAFQLLMLPKFAAK*"
     gene            159182..159778
                     /gene="kbaA"
                     /locus_tag="BSU_01560"
                     /old_locus_tag="BSU01560"
     S_feature       159779..160673
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_159779_160673"
                     /HighExp="Lbstat, Lbtran, M0t90, M40t90, H2O2, BC, Glucon,
                     S7, M40t45, S1"
                     /AntisenseName="ybaN"
                     /AntisenseCor="-2.6735901031407501E-2"
                     /AntisenseRegPval="-0.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S63"
     CDS             complement(159779..160543)
                     /gene="pdaB"
                     /locus_tag="BSU_01570"
                     /old_locus_tag="BSU01570"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:12662922, 15547282, 15598884"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12662922, 15547282,
                     15598884; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase involved in
                     sporulation"
                     /protein_id="NP_388038.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01570"
                     /db_xref="EnsemblGenomes-Tr:CAB11933"
                     /db_xref="GOA:P50865"
                     /db_xref="InterPro:IPR002509"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="InterPro:IPR014132"
                     /db_xref="SubtiList:BG11416"
                     /db_xref="UniProtKB/Swiss-Prot:P50865"
                     /translation="MNHFYVWHIKRVKQLIIILIAAFAAASFFYIQRAVPLPVFSTDT
                     GPKAIYKGETDSKDISLTFDISWGDERAEPILNTLKANGIKNATFFLSASWAERHPDT
                     VARIVKDGHQIGSMGYAYKNYANLESSEIKKDMNRAQTAFEKLGVKDIQLLRPPTGQF
                     NKNVLKVAKQYNYTVVHYSVNSQDWTNPGVEKIIDNVTKQVSGGDIILLHASDSAKQT
                     EEALPDIIHQLKEKGLKNVTVGDLIANSDAKSAEVK*"
     gene            complement(159779..160543)
                     /gene="pdaB"
                     /locus_tag="BSU_01570"
                     /old_locus_tag="BSU01570"
     promotor_-10    complement(160574..160592)
                     /Source="Nicolas_upshift_promotors"
                     /id="U109"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=979
                     /SigmaFactorBS="caacacccaatttaggctgtatgtgaagagacattttatcgG
                     TTATAttcaattgtccatgcTCATAAGATGTAAAACAAGaatgatggacaagataagg
                     a"
                     /listShort="ybaN, S62"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(160594)
                     /Source="Nicolas_upshifts"
                     /id="U109"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=979
                     /SigmaFactorBS="caacacccaatttaggctgtatgtgaagagacattttatcgG
                     TTATAttcaattgtccatgcTCATAAGATGTAAAACAAGaatgatggacaagataagg
                     a"
                     /listShort="ybaN, S62"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(160608..160613)
                     /Source="Nicolas_upshift_promotors"
                     /id="U109"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=979
                     /SigmaFactorBS="caacacccaatttaggctgtatgtgaagagacattttatcgG
                     TTATAttcaattgtccatgcTCATAAGATGTAAAACAAGaatgatggacaagataagg
                     a"
                     /listShort="ybaN, S62"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    160651..160658
                     /Source="Nicolas_upshift_promotors"
                     /id="U110"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp=1
                     /psig=1
                     /xcortree=2624
                     /SigmaFactorBS="gataaaatgtctcttcacatacagcctaaattgggtGTTGAC
                     CTtttgataatatccgTGATATATTATTATTCGTCGctgataaacagctgacatcaac
                     t"
                     /listShort="S64, rrnI-16S, rrnI-23S, rrnI-5S, trnI-Asn,
                     trnI-Thr, trnI-Gly, trnI-Arg, trnI-Pro, trnI-Ala,
                     rrnH-16S, rrnH-23S, rrnH-5S, rrnG-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    160673..160692
                     /Source="Nicolas_upshift_promotors"
                     /id="U110"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp=1
                     /psig=1
                     /xcortree=2624
                     /SigmaFactorBS="gataaaatgtctcttcacatacagcctaaattgggtGTTGAC
                     CTtttgataatatccgTGATATATTATTATTCGTCGctgataaacagctgacatcaac
                     t"
                     /listShort="S64, rrnI-16S, rrnI-23S, rrnI-5S, trnI-Asn,
                     trnI-Thr, trnI-Gly, trnI-Arg, trnI-Pro, trnI-Ala,
                     rrnH-16S, rrnH-23S, rrnH-5S, rrnG-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       160675..160892
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_160675_160892"
                     /HighExp="Diami, LBGstat, UNK1, H2O2, MG 15, Oxctl,
                     MG-0.1, BMM, T-1.10H, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S64"
     upshifts        160675
                     /Source="Nicolas_upshifts"
                     /id="U110"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp=1
                     /psig=1
                     /xcortree=2624
                     /SigmaFactorBS="gataaaatgtctcttcacatacagcctaaattgggtGTTGAC
                     CTtttgataatatccgTGATATATTATTATTCGTCGctgataaacagctgacatcaac
                     t"
                     /listShort="S64, rrnI-16S, rrnI-23S, rrnI-5S, trnI-Asn,
                     trnI-Thr, trnI-Gly, trnI-Arg, trnI-Pro, trnI-Ala,
                     rrnH-16S, rrnH-23S, rrnH-5S, rrnG-16S"
                     /GFF_Attribute="listLong"
     rRNA            160893..162445
                     /gene="rrnI-16S"
                     /locus_tag="BSU_rRNA_23"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            160893..162445
                     /gene="rrnI-16S"
                     /locus_tag="BSU_rRNA_23"
     rRNA            162610..165535
                     /gene="rrnI-23S"
                     /locus_tag="BSU_rRNA_14"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            162610..165535
                     /gene="rrnI-23S"
                     /locus_tag="BSU_rRNA_14"
     rRNA            165591..165707
                     /gene="rrnI-5S"
                     /locus_tag="BSU_rRNA_15"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            165591..165707
                     /gene="rrnI-5S"
                     /locus_tag="BSU_rRNA_15"
     tRNA            165754..165825
                     /gene="trnI-Asn"
                     /locus_tag="BSU_tRNA_23"
                     /product="tRNA-Asn"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Asn(GUU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            165754..165825
                     /gene="trnI-Asn"
                     /locus_tag="BSU_tRNA_23"
     tRNA            165830..165902
                     /gene="trnI-Thr"
                     /locus_tag="BSU_tRNA_24"
                     /product="tRNA-Thr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Thr(GGU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            165830..165902
                     /gene="trnI-Thr"
                     /locus_tag="BSU_tRNA_24"
     tRNA            165959..166033
                     /gene="trnI-Gly"
                     /locus_tag="BSU_tRNA_25"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gly(GCC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            165959..166033
                     /gene="trnI-Gly"
                     /locus_tag="BSU_tRNA_25"
     tRNA            166064..166140
                     /gene="trnI-Arg"
                     /locus_tag="BSU_tRNA_26"
                     /product="tRNA-Arg"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Arg(AGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            166064..166140
                     /gene="trnI-Arg"
                     /locus_tag="BSU_tRNA_26"
     tRNA            166168..166244
                     /gene="trnI-Pro"
                     /locus_tag="BSU_tRNA_27"
                     /product="tRNA-Pro"
                     /inference="profile:tRNAscan:1.23"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            166168..166244
                     /gene="trnI-Pro"
                     /locus_tag="BSU_tRNA_27"
     tRNA            166253..166328
                     /gene="trnI-Ala"
                     /locus_tag="BSU_tRNA_28"
                     /product="tRNA-Ala"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ala(UGC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            166253..166328
                     /gene="trnI-Ala"
                     /locus_tag="BSU_tRNA_28"
     rRNA            166500..168053
                     /gene="rrnH-16S"
                     /locus_tag="BSU_rRNA_16"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            166500..168053
                     /gene="rrnH-16S"
                     /locus_tag="BSU_rRNA_16"
     rRNA            168218..171141
                     /gene="rrnH-23S"
                     /locus_tag="BSU_rRNA_29"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            168218..171141
                     /gene="rrnH-23S"
                     /locus_tag="BSU_rRNA_29"
     rRNA            171197..171314
                     /gene="rrnH-5S"
                     /locus_tag="BSU_rRNA_24"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            171197..171314
                     /gene="rrnH-5S"
                     /locus_tag="BSU_rRNA_24"
     rRNA            171498..173049
                     /gene="rrnG-16S"
                     /locus_tag="BSU_rRNA_25"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            171498..173049
                     /gene="rrnG-16S"
                     /locus_tag="BSU_rRNA_25"
     rRNA            173214..176141
                     /gene="rrnG-23S"
                     /locus_tag="BSU_rRNA_27"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            173214..176141
                     /gene="rrnG-23S"
                     /locus_tag="BSU_rRNA_27"
     rRNA            176197..176315
                     /gene="rrnG-5S"
                     /locus_tag="BSU_rRNA_28"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            176197..176315
                     /gene="rrnG-5S"
                     /locus_tag="BSU_rRNA_28"
     S_feature       176316..176924
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_176316_176924"
                     /HighExp="G180, G135, C30, Oxctl, Paraq, Cold, G150, H2O2,
                     Heat, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S65"
     promotor_-35    176892..176896
                     /Source="Nicolas_upshift_promotors"
                     /id="U111"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95104895104895"
                     /psig=1
                     /xcortree=2510
                     /SigmaFactorBS="tgagccatttttttcttcagcaatcaTCTTGcgtaattgata
                     aaaaTTTATTATGATACTCTTTGTatgacaactccttgcctcaatacaatatactcaa
                     c"
                     /listShort="S66, ybaR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    176912..176931
                     /Source="Nicolas_upshift_promotors"
                     /id="U111"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95104895104895"
                     /psig=1
                     /xcortree=2510
                     /SigmaFactorBS="tgagccatttttttcttcagcaatcaTCTTGcgtaattgata
                     aaaaTTTATTATGATACTCTTTGTatgacaactccttgcctcaatacaatatactcaa
                     c"
                     /listShort="S66, ybaR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       176926..177082
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_176926_177082"
                     /HighExp="LBGstat, G180, G135, dia15, C30, Oxctl, LPhT,
                     G150, Heat, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S66"
     upshifts        176926
                     /Source="Nicolas_upshifts"
                     /id="U111"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95104895104895"
                     /psig=1
                     /xcortree=2510
                     /SigmaFactorBS="tgagccatttttttcttcagcaatcaTCTTGcgtaattgata
                     aaaaTTTATTATGATACTCTTTGTatgacaactccttgcctcaatacaatatactcaa
                     c"
                     /listShort="S66, ybaR"
                     /GFF_Attribute="listLong"
     CDS             177083..178519
                     /gene="ybaR"
                     /locus_tag="BSU_01580"
                     /old_locus_tag="BSU01580"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388039.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01580"
                     /db_xref="EnsemblGenomes-Tr:CAB11934"
                     /db_xref="GOA:P55189"
                     /db_xref="InterPro:IPR001902"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR011547"
                     /db_xref="InterPro:IPR018045"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="SubtiList:BG11562"
                     /db_xref="UniProtKB/Swiss-Prot:P55189"
                     /translation="MNNSFTLKQQWFGNIRKDILAGILVALALIPEAIGFSIIAGVDP
                     MVGLYASFCIAIIISIFGGRPGMISAATGSMAVVMVSLVADHGLQYLFAATILTGIIQ
                     VILGISKIARLMKFIPRSVMIGFVNALAILIFSAQLPQFEGASWSMYAMLAGSLVIIY
                     VLPRFTTAVPSPLVAIIVMTIIAVTFHVDVRTVGDMGNISSSLPHFLIPDVPFTFETL
                     QIIFPYSIALAFVGLLESLLTAQIIDEMTDTDSDKNKESRGQGIANIVTGFFGGMAGC
                     AMIGQSVINTKAGGRGRLSAFVAGAFLMFLIAVLSHVVVKIPMAALVAVMVMVSVGTF
                     DWSSLKGLKKAPLTDSIVMVVTVVTVVVTDDLSKGVFVGVLLSAVFFVAKISKLKIVS
                     HAEDQKLRTYQVKGQIFFASVTDLTNAFIYQEDIERVVIDLTEAHVWDDSGAAALDKI
                     VAKFKEQGIEAELKGLNKASKSLMKQMA*"
     gene            177083..178519
                     /gene="ybaR"
                     /locus_tag="BSU_01580"
                     /old_locus_tag="BSU01580"
     downshifts      178508
                     /Source="Nicolas_upshifts"
                     /id="D56"
                     /incds=0
                     /nref=144
                     /ntot=228
                     /MaxReadThrough="2.81758"
                     /MaxDrop="4.71162"
                     /score="18.4600501"
                     /energy="-12"
                     /TU="NA"
                     /idTUdmin="U111"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     promotor_-35    178562..178567
                     /Source="Nicolas_upshift_promotors"
                     /id="U112"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.707292707292707"
                     /xcortree=1448
                     /SigmaFactorBS="aatgagatctgggcttttttatatAACATAcacttaagcagc
                     ATTGATATAATAGAGAGAAGagaaattttaaataggggacttgcatatgatgcttcag
                     a"
                     /listShort="ybaS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    178580..178599
                     /Source="Nicolas_upshift_promotors"
                     /id="U112"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.707292707292707"
                     /xcortree=1448
                     /SigmaFactorBS="aatgagatctgggcttttttatatAACATAcacttaagcagc
                     ATTGATATAATAGAGAGAAGagaaattttaaataggggacttgcatatgatgcttcag
                     a"
                     /listShort="ybaS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        178598
                     /Source="Nicolas_upshifts"
                     /id="U112"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.707292707292707"
                     /xcortree=1448
                     /SigmaFactorBS="aatgagatctgggcttttttatatAACATAcacttaagcagc
                     ATTGATATAATAGAGAGAAGagaaattttaaataggggacttgcatatgatgcttcag
                     a"
                     /listShort="ybaS"
                     /GFF_Attribute="listLong"
     CDS             178665..179585
                     /gene="ybaS"
                     /locus_tag="BSU_01590"
                     /old_locus_tag="BSU01590"
                     /function="7: Transport and binding proteins"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sodium dependent transporter"
                     /protein_id="NP_388040.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01590"
                     /db_xref="EnsemblGenomes-Tr:CAB11935"
                     /db_xref="GOA:P55190"
                     /db_xref="InterPro:IPR002657"
                     /db_xref="InterPro:IPR004710"
                     /db_xref="SubtiList:BG11563"
                     /db_xref="UniProtKB/Swiss-Prot:P55190"
                     /translation="MPLLTPTSVVLGVLLSQFLNGYEWAVPWIFAFITFAGSLSANFQ
                     SLRHALSHPLPMILALFVLHIFMPLFAWGSGHLIFKGDPLTITGLTLAVVIPTGITSL
                     IWAAMYKGNVGLTLSIILVDTVLSPLIVPLSLSLLAGAQVHMDVWGMMKGLIVMVVIP
                     SFLGMLFNQMSSPERTAFVSSALSPFSKLCLMAVIAINSSAIAPYFKSIDLRFAGIAV
                     TVFFIALTGYAAAWLIGKMMKRRQEEIVSLIFTGGMRNISAGAVLAVTFFPSQVAVPV
                     VIGMLFQQILAALFGYMLNRFELKPMLQKA*"
     gene            178665..179585
                     /gene="ybaS"
                     /locus_tag="BSU_01590"
                     /old_locus_tag="BSU01590"
     downshifts      179566
                     /Source="Nicolas_upshifts"
                     /id="D57"
                     /incds=0
                     /nref=33
                     /ntot=224
                     /MaxReadThrough="1.3063"
                     /MaxDrop="3.58628"
                     /score="13.3102824"
                     /energy="-10.5"
                     /TU="NA"
                     /idTUdmin="U112"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(179595..180347)
                     /gene="eesA"
                     /locus_tag="BSU_01600"
                     /old_locus_tag="BSU01600"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 2974033, 17725565, 22210890, 28283524"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 2974033,
                     17725565, 22210890, 28283524; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-chelator (enterobactin family) esterase"
                     /protein_id="NP_388041.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01600"
                     /db_xref="EnsemblGenomes-Tr:CAB11936"
                     /db_xref="GOA:P55192"
                     /db_xref="InterPro:IPR000801"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG11565"
                     /db_xref="UniProtKB/Swiss-Prot:P55192"
                     /translation="MKGSLSEHKAGNRRFTLYLPPSYSTDSGGFPAVYVQDGSSLFQN
                     QIELLESAFQQQRLPELVLIGIEPENRLDEYTPWPAASLSDRFTDFGGMGYHYLSDIT
                     NQFIPLIEENWNVTREPQSRGMIGASLGGLISMFAILKYPSMFGKIGSISGSYWYENA
                     AETIHISSLKPGTARVFMSIGSEEGREKQSIQRHMLKKTKQVHQSLKEKGFTEDQLCL
                     SIEKGAVHHHKYFCKQFINALEWLYGKNRSTL*"
     gene            complement(179595..180347)
                     /gene="eesA"
                     /locus_tag="BSU_01600"
                     /old_locus_tag="BSU01600"
     downshifts      complement(179619)
                     /Source="Nicolas_upshifts"
                     /id="D58"
                     /incds=0
                     /nref=15
                     /ntot=115
                     /MaxReadThrough="0.3819"
                     /MaxDrop="4.57603"
                     /score="25.9728338"
                     /energy="-10.5"
                     /TU="NA"
                     /idTUdmin="U114"
                     /TUdmin=1
                     /isTUend="TRUE"
     CDS             complement(180344..181354)
                     /gene="feuC"
                     /locus_tag="BSU_01610"
                     /old_locus_tag="BSU01610"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 2651410, 15849754,
                     16850406, 27375568; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-uptake protein"
                     /protein_id="NP_388042.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01610"
                     /db_xref="EnsemblGenomes-Tr:CAB11937"
                     /db_xref="GOA:P40411"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG10837"
                     /db_xref="UniProtKB/Swiss-Prot:P40411"
                     /translation="MAKKYALFIALILVVSYFSLTSGSFSVRPAELLSTLFQIDPNPQ
                     YEILLFDLRLPRVVMAAIIGLGLGIAGAVIQAITRNGLADPGILGINAGAGAGIVAFM
                     LLFQGQKEVTSIAAAMGMPLFGLIGGLIAAILIYIFAWHRGNLDSGRIILVGIAINSG
                     FSALSLFLSLKMDPQDYQMAMVWKNGSIWSANWTYITAVLPWMLLFIPILIGKSRLLD
                     TIRFDEDTVRSLGISSNKEKTILLVACVAIISACVSVAGSMAFVGLIAPHISRRLAGV
                     EHRYILPLSGLIGMLLVISADFAGKLFFQPAEVPAGIILAILGVPYFLYLLFKQKKGE
                     NA*"
     gene            complement(180344..181354)
                     /gene="feuC"
                     /locus_tag="BSU_01610"
                     /old_locus_tag="BSU01610"
     CDS             complement(181347..182351)
                     /gene="feuB"
                     /locus_tag="BSU_01620"
                     /old_locus_tag="BSU01620"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2651410, 15849754, 16850406,
                     17725565; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ferri-bacillibactin permease"
                     /protein_id="NP_388043.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01620"
                     /db_xref="EnsemblGenomes-Tr:CAB11938"
                     /db_xref="GOA:P40410"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG10836"
                     /db_xref="UniProtKB/Swiss-Prot:P40410"
                     /translation="MYSKQWTRIILITSPFAIALSLLLSILYGAKHLSTDIVFTSLIH
                     FDPGNTDHQIIWHSRIPRAAGALLIGAALAVSGALMQGITRNYLASPSIMGVSDGSAF
                     IITLCMVLLPQSSSIEMMIYSFIGSALGAVLVFGLAAMMPNGFTPVQLAIIGTVTSML
                     LSSLSAAMSIYFQISQDLSFWYSARLHQMSPDFLKLAAPFFLIGIIMAISLSKKVTAV
                     SLGDDISKSLGQKKKTIKIMAMLSVIILTGSAVALAGKIAFVGLVVPHITRFLVGSDY
                     SRLIPCSCILGGIFLTLCDLASRFINYPFETPIEVVTSIIGVPFFLYLIKRKGGEQNG
                     *"
     gene            complement(181347..182351)
                     /gene="feuB"
                     /locus_tag="BSU_01620"
                     /old_locus_tag="BSU01620"
     CDS             complement(182370..183323)
                     /gene="feuA"
                     /locus_tag="BSU_01630"
                     /old_locus_tag="BSU01630"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8388528, 16889643, 17725565, 21802011, 22303020,
                     25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8388528, 16889643,
                     17725565, 21802011, 22303020, 25355936; Product type lp :
                     lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="ferri-bacillibactin-binding lipoprotein"
                     /protein_id="NP_388044.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01630"
                     /db_xref="EnsemblGenomes-Tr:CAB11939"
                     /db_xref="GOA:P40409"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="PDB:2PHZ"
                     /db_xref="PDB:2WHY"
                     /db_xref="PDB:2WI8"
                     /db_xref="PDB:2XUZ"
                     /db_xref="PDB:2XV1"
                     /db_xref="SubtiList:BG10835"
                     /db_xref="UniProtKB/Swiss-Prot:P40409"
                     /translation="MKKISLTLLILLLALTAAACGSKNESTASKASGTASEKKKIEYL
                     DKTYEVTVPTDKIAITGSVESMEDAKLLDVHPQGAISFSGKFPDMFKDITDKAEPTGE
                     KMEPNIEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMMLLAQLT
                     GKEKKAKKIIADYEQDLKEIKTKINDKAKDSKALVIRIRQGNIYIYPEQVYFNSTLYG
                     DLGLKAPNEVKAAKAQELSSLEKLSEMNPDHIFVQFSDDENADKPDALKDLEKNPIWK
                     SLKAVKEDHVYVNSVDPLAQGGTAWSKVRFLKAAAEKLTQN*"
     gene            complement(182370..183323)
                     /gene="feuA"
                     /locus_tag="BSU_01630"
                     /old_locus_tag="BSU01630"
     promotor_-35    182683..182689
                     /Source="Nicolas_upshift_promotors"
                     /id="U113"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=157
                     /SigmaFactorBS="gccttaaggcctaaatcaccgtatagtgtgGAGTTGAaatac
                     acctgttcaGGGTAAATGTAAATGTTGCcttgtctgattctgatgacaagcgcttttg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    182704..182722
                     /Source="Nicolas_upshift_promotors"
                     /id="U113"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=157
                     /SigmaFactorBS="gccttaaggcctaaatcaccgtatagtgtgGAGTTGAaatac
                     acctgttcaGGGTAAATGTAAATGTTGCcttgtctgattctgatgacaagcgcttttg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        182713
                     /Source="Nicolas_upshifts"
                     /id="U113"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=157
                     /SigmaFactorBS="gccttaaggcctaaatcaccgtatagtgtgGAGTTGAaatac
                     acctgttcaGGGTAAATGTAAATGTTGCcttgtctgattctgatgacaagcgcttttg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    complement(183354..183373)
                     /Source="Nicolas_upshift_promotors"
                     /id="U114"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.52947052947053"
                     /psig="0.984015984015984"
                     /xcortree=2097
                     /SigmaFactorBS="gtccatgataaatcaggaatttgtccatggtgttatatctgt
                     tcattcTCTATAATTCCAATTGATAAtagttatcaattgaacaggaggctctatagat
                     g"
                     /listShort="feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(183361)
                     /Source="Nicolas_upshifts"
                     /id="U114"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.52947052947053"
                     /psig="0.984015984015984"
                     /xcortree=2097
                     /SigmaFactorBS="gtccatgataaatcaggaatttgtccatggtgttatatctgt
                     tcattcTCTATAATTCCAATTGATAAtagttatcaattgaacaggaggctctatagat
                     g"
                     /listShort="feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
     CDS             complement(183414..185003)
                     /gene="btr"
                     /locus_tag="BSU_01640"
                     /old_locus_tag="BSU01640"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16889643, 17725565, 17962296, 22210890"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16889643, 17725565,
                     17962296, 22210890; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator (AraC/XylS family) of
                     synthesis and uptake of the siderophore bacillibactin"
                     /protein_id="NP_388045.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01640"
                     /db_xref="EnsemblGenomes-Tr:CAB11940"
                     /db_xref="GOA:P40408"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="InterPro:IPR020449"
                     /db_xref="SubtiList:BG10834"
                     /db_xref="UniProtKB/Swiss-Prot:P40408"
                     /translation="MQNAVIYQPVQIEYLKKTSDLFSEQQLADSFVLIFHLKGNGYIS
                     IGTNTNPLQKKTLYVCPPNETFGFTPAADGHIDACIIRLLSYIKETGQDIFTPCTESE
                     LAKLKLMNVSHIENLAVRLQELAALWNESSQLSQLKCVIEVQSLIYDLFTASLSDQTD
                     THSAIEKTKHYIETHADTKITLAQLSQMAGISAKHYSESFKKWTGQSVTEFITKTRIT
                     KAKRLMAKSNCKLKEIAHQTGYQDEFYFSRIFKKYTGCSPTSYMKKRRKKIAAYGRGT
                     MGHLIPLHHIPFAAALHPKWTSYYYQHYSTDIPVQLSAYRFNEKWEENLYTLSQAEPD
                     VIVSMDSISPEEQDRLNRIAEVMYLPSEESWRTHFLQTASFLKEESEAEKWLADYDQQ
                     TTAAKKTLQHVQGLRFLFLRLHKQNFYLAHNRSVREVFFGDLGFSSATTADTPSEQAI
                     SLENIANYQADCMMLFLFKEPETIAYYQQLQQTEAWQNLSAVRDNRVYLLSLDPWNEY
                     SACGHERIVQQTVSLLSGDCP*"
     gene            complement(183414..185003)
                     /gene="btr"
                     /locus_tag="BSU_01640"
                     /old_locus_tag="BSU01640"
     promotor_-10    complement(185044..185063)
                     /Source="Nicolas_upshift_promotors"
                     /id="U115"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.506493506493506"
                     /psig=1
                     /xcortree=2112
                     /SigmaFactorBS="tttttttcatgctaaaaacccacccgctttaTATAGGAAaac
                     tttcatttattTGGTACAATTTTTATTGAAAatgattatcaattgaaagcttctgaaa
                     a"
                     /listShort="ybbB, feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(185056)
                     /Source="Nicolas_upshifts"
                     /id="U115"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.506493506493506"
                     /psig=1
                     /xcortree=2112
                     /SigmaFactorBS="tttttttcatgctaaaaacccacccgctttaTATAGGAAaac
                     tttcatttattTGGTACAATTTTTATTGAAAatgattatcaattgaaagcttctgaaa
                     a"
                     /listShort="ybbB, feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(185078..185085)
                     /Source="Nicolas_upshift_promotors"
                     /id="U115"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.506493506493506"
                     /psig=1
                     /xcortree=2112
                     /SigmaFactorBS="tttttttcatgctaaaaacccacccgctttaTATAGGAAaac
                     tttcatttattTGGTACAATTTTTATTGAAAatgattatcaattgaaagcttctgaaa
                     a"
                     /listShort="ybbB, feuA, feuB, feuC, ybbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(185165)
                     /Source="Nicolas_upshifts"
                     /id="D59"
                     /incds=0
                     /nref=19
                     /ntot=58
                     /MaxReadThrough="1.28464"
                     /MaxDrop="7.13916"
                     /score="9.64466628"
                     /energy="-10.1"
                     /TU="NA"
                     /idTUdmin="U116"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(185194..186438)
                     /gene="ybbC"
                     /locus_tag="BSU_01650"
                     /old_locus_tag="BSU01650"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388046.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01650"
                     /db_xref="EnsemblGenomes-Tr:CAB11941"
                     /db_xref="InterPro:IPR008302"
                     /db_xref="SubtiList:BG10833"
                     /db_xref="UniProtKB/Swiss-Prot:P40407"
                     /translation="MRKTIFAFLTGLMMFGTITAASASPDSKNQTAKKPKVQTGIDTL
                     LPDYKKQLKGKRIGLITNPAGVNTSLKSSVDILYENPDIKLTALFGPEHGVRGDAQAG
                     DEVGSYIDEKTGVPVYSLYGKTKKPTPEMLKNVDILMFDIQDVGTRFYTYIYTMAYAM
                     EAAKENGIPFMVLDRPNPQGGNHIEGPILEPEYASFVGLYPIPLKHGMTIGELASLFN
                     KEFSIDADLTVVKMKHWKRKMDFDDTRLPFVLPSPNMPTVESTFVYPATGLIEGTNIS
                     EGRGTTKPFELIGAPFIKSTELEETLNSLHLPGVTFRAASFTPTFSKHQGTLCHGVQL
                     YVTDRDKFEAVKTGLSVIKTIHDLYPEDFEFLSTGSFDKLAGNGWIRTKIENGTSVEN
                     IINSYEKTLQQFSKTRKKYLIY*"
     gene            complement(185194..186438)
                     /gene="ybbC"
                     /locus_tag="BSU_01650"
                     /old_locus_tag="BSU01650"
     downshifts      complement(185215)
                     /Source="Nicolas_upshifts"
                     /id="D60"
                     /incds=0
                     /nref=11
                     /ntot=122
                     /MaxReadThrough="7.66074"
                     /MaxDrop="4.10379"
                     /score="9.64466628"
                     /energy="-10.1"
                     /TU="U116"
                     /idTUdmin="U116"
                     /TUdmin="-50"
                     /isTUend="FALSE"
     CDS             complement(186452..188380)
                     /gene="nagZ"
                     /locus_tag="BSU_01660"
                     /old_locus_tag="BSU01660"
                     /EC_number="3.2.1.52"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8063094, 20400549, 20826810, 23177201, 26963691"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8063094, 20400549,
                     20826810, 23177201, 26963691; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosaminidase lipoprotein"
                     /protein_id="NP_388047.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01660"
                     /db_xref="EnsemblGenomes-Tr:CAB11942"
                     /db_xref="GOA:P40406"
                     /db_xref="InterPro:IPR001764"
                     /db_xref="InterPro:IPR002772"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR019800"
                     /db_xref="InterPro:IPR036881"
                     /db_xref="InterPro:IPR036962"
                     /db_xref="PDB:3BMX"
                     /db_xref="PDB:3LK6"
                     /db_xref="PDB:3NVD"
                     /db_xref="PDB:4GYJ"
                     /db_xref="PDB:4GYK"
                     /db_xref="SubtiList:BG10832"
                     /db_xref="UniProtKB/Swiss-Prot:P40406"
                     /translation="MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSL
                     DEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQT
                     VQLTDDYQKASPKIPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSII
                     GKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIAS
                     ALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAF
                     DDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHFGQEEA
                     VVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISL
                     KIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPK
                     KGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSLSKMNFASQVFKTEHEKQVKEAD
                     YIITGSYVVKNDPVVNDGVIDDTISDSSKWATVFPRAVMKAALQHNKPFVLMSLRNPY
                     DAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDIPSVTKPG
                     NTLYPLGYGLNIKTGRPL*"
     gene            complement(186452..188380)
                     /gene="nagZ"
                     /locus_tag="BSU_01660"
                     /old_locus_tag="BSU01660"
     CDS             complement(188408..189733)
                     /gene="amiE"
                     /locus_tag="BSU_01670"
                     /old_locus_tag="BSU01670"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:16452451, 20400549"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16452451, 20400549;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase hydrolyzing N-acetylmuramyl-L-Ala bond
                     of MurNAc peptides"
                     /protein_id="NP_388048.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01670"
                     /db_xref="EnsemblGenomes-Tr:CAB11943"
                     /db_xref="InterPro:IPR001466"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR022849"
                     /db_xref="SubtiList:BG11566"
                     /db_xref="UniProtKB/Swiss-Prot:O05213"
                     /translation="MKTKTLFIFSAILTLSIFAPNETFAQTAGNLIEPKIINAETAQF
                     STKKLRKVDQMIERDIAAGFPGAVLVVVKDGRIIKKAAYGYSKKYEGSELLRRPAKMK
                     TRTMFDLASNTKMYATNFALQRLVSQGKLDVYEKVSAYLPGFKDQPGDLIKGKDKIRV
                     IDVLQHQSGLPSSFYFYTPEKAGKYYSQERDKTIEYLTKIPLDYQTGTKHVYSDIGYM
                     LLGCIVEKLTGKPLDVYTEQELYKPLRLKHTLYNPLQKGFKPKQFAATERMGNTRDGV
                     IQFPNIRTNTLQGEVHDEKAFYSMDGVSGHAGLFSNADDMAILLQVMLNKGSYRNISL
                     FDQKTADLFTAPSATDPTFALGWRRNGSKSMEWMFGPHASENAYGHTGWTGTVTIIDP
                     AYNLGIALLTNKKHTPVIDPEENPNVFEGDQFPTGSYGSVITAIYEAME*"
     gene            complement(188408..189733)
                     /gene="amiE"
                     /locus_tag="BSU_01670"
                     /old_locus_tag="BSU01670"
     CDS             complement(189790..191157)
                     /gene="murP"
                     /locus_tag="BSU_01680"
                     /old_locus_tag="BSU01680"
                     /EC_number="2.7.1.192"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15060041, 15849754,
                     16850406, 10627040, 20400549, 22960854; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid PTS permease-MurP subunit"
                     /protein_id="NP_388049.3"
                     /db_xref="EnsemblGenomes-Gn:BSU01680"
                     /db_xref="EnsemblGenomes-Tr:CAB11944"
                     /db_xref="GOA:Q797S1"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG11567"
                     /db_xref="UniProtKB/Swiss-Prot:Q797S1"
                     /translation="MSKENNYHHLAQKILELCGGKSNISSYTHCMTRLRITPYDESKA
                     DAQALRKLDGVLGVVEAETLQIILGTGVVNHVTAAFSKLVSAEEGADVKEAAAKKKAD
                     INRKNATPFKLFLRKIASIFIPLIPALVASGLITGITKAIIQAGWLSADSQIAIILTV
                     IGSGLFTYLGILVGINASKEFGGTPALGALAGILIINPEIAKISLFGEELLPGRGGLI
                     GVLFAAIFIAYTEQFIRRFIPQSLDIIVTPTVSLLITGIVTYVVFMPLGGFISDAITS
                     GLLSILDIGGIAAGFILGATFLPLVVTGLHQGLTPVHMELINSIGNDPLLPILAMGGA
                     GQVGAAFAVFVKTKKTTLRKAIAGGLPSGLLGIGEPLIFGVTLPLGRPFLTACLGAGI
                     GGAFQAYFQVATIAIGVSGLPLSFLVLPSQIILYIVGLFISYAAGFLLTYAFGYKDEM
                     ASQFD*"
     gene            complement(189790..191157)
                     /gene="murP"
                     /locus_tag="BSU_01680"
                     /old_locus_tag="BSU01680"
     CDS             complement(191183..192034)
                     /gene="murR"
                     /locus_tag="BSU_01690"
                     /old_locus_tag="BSU01690"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 20400549; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MurR-N-acetylmuramic
                     acid"
                     /protein_id="NP_388050.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01690"
                     /db_xref="EnsemblGenomes-Tr:CAB11945"
                     /db_xref="GOA:Q45581"
                     /db_xref="InterPro:IPR000281"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR035472"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="PDB:2O3F"
                     /db_xref="SubtiList:BG11569"
                     /db_xref="UniProtKB/Swiss-Prot:Q45581"
                     /translation="MATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISA
                     LANSSDAAVIRLCKSLGLKGFQDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAG
                     NAIQAIQDTSDLMDYKELERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQAT
                     AFTDTHLVASLIANADKDDIVFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSV
                     SALADVPLYTAHSNEALIRSAATSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAA
                     IQSMRIK*"
     gene            complement(191183..192034)
                     /gene="murR"
                     /locus_tag="BSU_01690"
                     /old_locus_tag="BSU01690"
     CDS             complement(192051..192965)
                     /gene="murQ"
                     /locus_tag="BSU_01700"
                     /old_locus_tag="BSU01700"
                     /EC_number="4.2.1.126"
                     /function="16.13: Shape"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15983044, 20400549,
                     16452451; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactyl ether N-acetylmuramic-6-phosphate acid
                     etherase"
                     /protein_id="NP_388051.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01700"
                     /db_xref="EnsemblGenomes-Tr:CAB11946"
                     /db_xref="GOA:Q45582"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR005486"
                     /db_xref="InterPro:IPR005488"
                     /db_xref="SubtiList:BG11570"
                     /db_xref="UniProtKB/Swiss-Prot:Q45582"
                     /translation="MSEPLNLHRLTTESRNSQTVEIHKANTLGILKMINNEDMKVAAA
                     VQEVLPDIKTAVDCAYESFQNGGRLIYTGAGTSGRLGVMDAVECPPTYSVSPDQVIGI
                     MAGGPEAFLQAAEGIEDSEEAGAEDLRNIQLTSNDTVIAIAASGRTPYAAGALRYARK
                     VGAHTIALTCNENSAISKDADHSIEVVVGPEAITGSTRMKAATAHKMILNMISTAVMV
                     KIGKVYENLMVDVNVSNKKLKERAISIIQSLTNASYDTARYTLEQADHHVKTAIVMLK
                     TSTDQKQAQTLLDEANGFIDKAIEHYHP*"
     gene            complement(192051..192965)
                     /gene="murQ"
                     /locus_tag="BSU_01700"
                     /old_locus_tag="BSU01700"
     promotor_-10    complement(192996..193014)
                     /Source="Nicolas_upshift_promotors"
                     /id="U116"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.25974025974026"
                     /psig="0.681318681318681"
                     /xcortree=765
                     /SigmaFactorBS="agtgaaataaaatttcaaaaatttaaaaacatAGTTGAAAta
                     tcataacagaaatGAATATACTGAATATTGAGatatatcattttaaaacagggggcat
                     c"
                     /listShort="murQ, ybbH, ybbF, ybbE, ybbD, ybbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(193009)
                     /Source="Nicolas_upshifts"
                     /id="U116"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.25974025974026"
                     /psig="0.681318681318681"
                     /xcortree=765
                     /SigmaFactorBS="agtgaaataaaatttcaaaaatttaaaaacatAGTTGAAAta
                     tcataacagaaatGAATATACTGAATATTGAGatatatcattttaaaacagggggcat
                     c"
                     /listShort="murQ, ybbH, ybbF, ybbE, ybbD, ybbC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(193030..193037)
                     /Source="Nicolas_upshift_promotors"
                     /id="U116"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.25974025974026"
                     /psig="0.681318681318681"
                     /xcortree=765
                     /SigmaFactorBS="agtgaaataaaatttcaaaaatttaaaaacatAGTTGAAAta
                     tcataacagaaatGAATATACTGAATATTGAGatatatcattttaaaacagggggcat
                     c"
                     /listShort="murQ, ybbH, ybbF, ybbE, ybbD, ybbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(193075..193557)
                     /gene="ybbJ"
                     /locus_tag="BSU_01710"
                     /old_locus_tag="BSU01710"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyltransferase"
                     /protein_id="NP_388052.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01710"
                     /db_xref="EnsemblGenomes-Tr:CAB11947"
                     /db_xref="GOA:Q45583"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG11571"
                     /db_xref="UniProtKB/Swiss-Prot:Q45583"
                     /translation="MTQDISLSFYKPEHLPELQSFTLTNDDKRFTSLPKEVLSQALGI
                     QDRYPVVILKDDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAM
                     LLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRRIGPLGEQLILHHFL
                     *"
     gene            complement(193075..193557)
                     /gene="ybbJ"
                     /locus_tag="BSU_01710"
                     /old_locus_tag="BSU01710"
     CDS             complement(193570..194025)
                     /gene="ybbK"
                     /locus_tag="BSU_01720"
                     /old_locus_tag="BSU01720"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388053.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01720"
                     /db_xref="EnsemblGenomes-Tr:CAB11948"
                     /db_xref="InterPro:IPR007553"
                     /db_xref="SubtiList:BG11572"
                     /db_xref="UniProtKB/Swiss-Prot:Q45584"
                     /translation="MILVSSCLGGIECRYNGSHAASEKIRKLVDEKKAVMACPELLGG
                     FSTPREPAEIIGGTGEDVLNGTAKIVTASGEDVTELYMEGAAKTLAYAKEINASAVIL
                     KENSPSCGSGFIYNGTFSGKKITGSGVTAALLKQAGYRVISENELNDIL*"
     gene            complement(193570..194025)
                     /gene="ybbK"
                     /locus_tag="BSU_01720"
                     /old_locus_tag="BSU01720"
     promotor_-10    complement(194051..194070)
                     /Source="Nicolas_upshift_promotors"
                     /id="U117"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7002997002997"
                     /psig="0.992007992007992"
                     /xcortree=3038
                     /SigmaFactorBS="ttttttattttcaaactttttaactccttttttaactgaaaa
                     agccTCccaactaaagccatTTATTTTATGATAGAGACAAgcaaagcaagagaggaga
                     a"
                     /listShort="ybbK, ybbJ, murQ, ybbH, ybbF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(194072)
                     /Source="Nicolas_upshifts"
                     /id="U117"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7002997002997"
                     /psig="0.992007992007992"
                     /xcortree=3038
                     /SigmaFactorBS="ttttttattttcaaactttttaactccttttttaactgaaaa
                     agccTCccaactaaagccatTTATTTTATGATAGAGACAAgcaaagcaagagaggaga
                     a"
                     /listShort="ybbK, ybbJ, murQ, ybbH, ybbF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(194085..194086)
                     /Source="Nicolas_upshift_promotors"
                     /id="U117"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.7002997002997"
                     /psig="0.992007992007992"
                     /xcortree=3038
                     /SigmaFactorBS="ttttttattttcaaactttttaactccttttttaactgaaaa
                     agccTCccaactaaagccatTTATTTTATGATAGAGACAAgcaaagcaagagaggaga
                     a"
                     /listShort="ybbK, ybbJ, murQ, ybbH, ybbF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    194145..194152
                     /Source="Nicolas_upshift_promotors"
                     /id="U118"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig=1
                     /xcortree=2416
                     /SigmaFactorBS="tttgaaaataaaaaatttaattttcctCTTTACAAacagggg
                     gtgacctGTATATAATAACTTTTGTCAgctcgacgagaacacaacggcccgttggtca
                     a"
                     /listShort="trnSL-Glu2, trnSL-Val1, trnSL-Thr1,
                     trnSL-Tyr1, trnSL-Gln2, S67"
                     /listLong="sigW, rsiW, S68, ybbP, ybbR, glmM, NA, S69,
                     glmS"
                     /label="promotor_-35"
     promotor_-10    194167..194186
                     /Source="Nicolas_upshift_promotors"
                     /id="U118"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig=1
                     /xcortree=2416
                     /SigmaFactorBS="tttgaaaataaaaaatttaattttcctCTTTACAAacagggg
                     gtgacctGTATATAATAACTTTTGTCAgctcgacgagaacacaacggcccgttggtca
                     a"
                     /listShort="trnSL-Glu2, trnSL-Val1, trnSL-Thr1,
                     trnSL-Tyr1, trnSL-Gln2, S67"
                     /listLong="sigW, rsiW, S68, ybbP, ybbR, glmM, NA, S69,
                     glmS"
                     /label="promotor_-10"
     upshifts        194178
                     /Source="Nicolas_upshifts"
                     /id="U118"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig=1
                     /xcortree=2416
                     /SigmaFactorBS="tttgaaaataaaaaatttaattttcctCTTTACAAacagggg
                     gtgacctGTATATAATAACTTTTGTCAgctcgacgagaacacaacggcccgttggtca
                     a"
                     /listShort="trnSL-Glu2, trnSL-Val1, trnSL-Thr1,
                     trnSL-Tyr1, trnSL-Gln2, S67"
                     /listLong="sigW, rsiW, S68, ybbP, ybbR, glmM, NA, S69,
                     glmS"
     tRNA            194205..194279
                     /gene="trnSL-Glu2"
                     /locus_tag="BSU_tRNA_75"
                     /product="tRNA-Glu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Glu(UUC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            194205..194279
                     /gene="trnSL-Glu2"
                     /locus_tag="BSU_tRNA_75"
     tRNA            194283..194358
                     /gene="trnSL-Val1"
                     /locus_tag="BSU_tRNA_78"
                     /product="tRNA-Val"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Val(UAC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            194283..194358
                     /gene="trnSL-Val1"
                     /locus_tag="BSU_tRNA_78"
     tRNA            194363..194435
                     /gene="trnSL-Thr1"
                     /locus_tag="BSU_tRNA_76"
                     /product="tRNA-Thr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Thr(UGU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            194363..194435
                     /gene="trnSL-Thr1"
                     /locus_tag="BSU_tRNA_76"
     tRNA            194458..194542
                     /gene="trnSL-Tyr1"
                     /locus_tag="BSU_tRNA_77"
                     /product="tRNA-Tyr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Tyr(GAU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            194458..194542
                     /gene="trnSL-Tyr1"
                     /locus_tag="BSU_tRNA_77"
     tRNA            194547..194621
                     /gene="trnSL-Gln2"
                     /locus_tag="BSU_tRNA_74"
                     /product="tRNA-Gln"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gln(UUG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            194547..194621
                     /gene="trnSL-Gln2"
                     /locus_tag="BSU_tRNA_74"
     downshifts      194624
                     /Source="Nicolas_upshifts"
                     /id="D61"
                     /incds=0
                     /nref=10
                     /ntot=91
                     /MaxReadThrough="4.25215"
                     /MaxDrop="3.84626"
                     /score="25.5087424"
                     /energy="-11.4"
                     /TU="U118"
                     /idTUdmin="U118"
                     /TUdmin="-176"
                     /isTUend="FALSE"
     S_feature       194669..194786
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_194669_194786"
                     /HighExp="Paraq, BMM, H2O2, Heat, G180, G135, Oxctl, G150,
                     C30, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S67"
     promotor_-35    194787..194796
                     /Source="Nicolas_upshift_promotors"
                     /id="U119"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1680
                     /SigmaFactorBS="ttcacgaattaccatctacaccctgccaaaaatttgataaac
                     ttattttataaaaaaatTGAAACCTTTtgaaacgaagcTCGTATACATACAGACcggt
                     g"
                     /listShort="sigW, rsiW"
                     /listLong="S68, ybbP, ybbR, glmM, NA, S69, glmS"
                     /label="promotor_-35"
     upshifts        194788
                     /Source="Nicolas_upshifts"
                     /id="U119"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1680
                     /SigmaFactorBS="ttcacgaattaccatctacaccctgccaaaaatttgataaac
                     ttattttataaaaaaatTGAAACCTTTtgaaacgaagcTCGTATACATACAGACcggt
                     g"
                     /listShort="sigW, rsiW"
                     /listLong="S68, ybbP, ybbR, glmM, NA, S69, glmS"
     promotor_-10    194808..194823
                     /Source="Nicolas_upshift_promotors"
                     /id="U119"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1680
                     /SigmaFactorBS="ttcacgaattaccatctacaccctgccaaaaatttgataaac
                     ttattttataaaaaaatTGAAACCTTTtgaaacgaagcTCGTATACATACAGACcggt
                     g"
                     /listShort="sigW, rsiW"
                     /listLong="S68, ybbP, ybbR, glmM, NA, S69, glmS"
                     /label="promotor_-10"
     CDS             194849..195412
                     /gene="sigW"
                     /locus_tag="BSU_01730"
                     /old_locus_tag="BSU01730"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11866510, 15130127, 16629676, 21542858, 28319136,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11866510, 15130127,
                     16629676, 21542858, 28319136, 22720735; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase ECF(extracytoplasmic
                     function)-type sigma factor W"
                     /protein_id="NP_388054.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01730"
                     /db_xref="EnsemblGenomes-Tr:CAB11949"
                     /db_xref="GOA:Q45585"
                     /db_xref="InterPro:IPR000838"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR013249"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="InterPro:IPR014294"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="PDB:5WUQ"
                     /db_xref="PDB:5WUR"
                     /db_xref="SubtiList:BG11573"
                     /db_xref="UniProtKB/Swiss-Prot:Q45585"
                     /translation="MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHE
                     AEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTE
                     GLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGE
                     ILNIPVGTVKTRIHRGREALRKQLRDL*"
     gene            194849..195412
                     /gene="sigW"
                     /locus_tag="BSU_01730"
                     /old_locus_tag="BSU01730"
     CDS             195426..196052
                     /gene="rsiW"
                     /locus_tag="BSU_01740"
                     /old_locus_tag="BSU01740"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15130127, 28319136, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15130127, 28319136,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma(W) factor"
                     /protein_id="NP_388055.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01740"
                     /db_xref="EnsemblGenomes-Tr:CAB11950"
                     /db_xref="GOA:Q45588"
                     /db_xref="InterPro:IPR027383"
                     /db_xref="PDB:5WUQ"
                     /db_xref="PDB:5WUR"
                     /db_xref="SubtiList:BG11574"
                     /db_xref="UniProtKB/Swiss-Prot:Q45588"
                     /translation="MSCPEQIVQLMHMHLDGDILPKDEHVLNEHLETCEKCRKHFYEM
                     EKSIALVRSTSHVEAPADFTANVMAKLPKEKKRASVKRWFRTHPVIAAAAVFIILMGG
                     GFFNSWHNDHNFSVSKQPNLVVHNHTVTVPEGETVKGDVTVKNGKLIIKGKIDGDVTV
                     VNGEKYMASAGQVTGQIEEINQLFDWTWYKMKSAGKSVLDAFNPNGEE*"
     gene            195426..196052
                     /gene="rsiW"
                     /locus_tag="BSU_01740"
                     /old_locus_tag="BSU01740"
     downshifts      complement(195844)
                     /Source="Nicolas_upshifts"
                     /id="D62"
                     /incds=1
                     /nref=2
                     /ntot=181
                     /MaxReadThrough="1.52124"
                     /MaxDrop="3.24828"
                     /score="0.305471631"
                     /energy="-6.9"
                     /TU="NA"
                     /idTUdmin="U120"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_no_box complement(196002..196102)
                     /Source="Nicolas_upshift_promotors"
                     /id="U120"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95904095904096"
                     /psig="0.002997002997003"
                     /xcortree=56
                     /SigmaFactorBS="tgtgccagccctctcagcccgcaaaaaaagagcaaagcggct
                     aacgcgctttactcttctccgttcggattgaatgcatcgagtacacttttccccgcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     downshifts      196032
                     /Source="Nicolas_upshifts"
                     /id="D63"
                     /incds=0
                     /nref=251
                     /ntot=269
                     /MaxReadThrough="4.26924"
                     /MaxDrop="8.34597"
                     /score="7.39786279"
                     /energy="-10.8"
                     /TU="U119"
                     /idTUdmin="U119"
                     /TUdmin="-88"
                     /isTUend="FALSE"
     upshifts        complement(196042)
                     /Source="Nicolas_upshifts"
                     /id="U120"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95904095904096"
                     /psig="0.002997002997003"
                     /xcortree=56
                     /SigmaFactorBS="tgtgccagccctctcagcccgcaaaaaaagagcaaagcggct
                     aacgcgctttactcttctccgttcggattgaatgcatcgagtacacttttccccgcag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    196101..196108
                     /Source="Nicolas_upshift_promotors"
                     /id="U121"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.73026973026973"
                     /psig=1
                     /xcortree=1886
                     /SigmaFactorBS="tctttttttgcgggctgagagggctggcaCATTTCACttgct
                     aaatcgaaaTGTGGTATAATGGGCTCGCTatgtaaagtacatatgcgtaacacgtaaa
                     a"
                     /listShort="S68, ybbP, ybbR, glmM"
                     /listLong="NA, S69, glmS"
                     /label="promotor_-35"
     promotor_-10    196123..196142
                     /Source="Nicolas_upshift_promotors"
                     /id="U121"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.73026973026973"
                     /psig=1
                     /xcortree=1886
                     /SigmaFactorBS="tctttttttgcgggctgagagggctggcaCATTTCACttgct
                     aaatcgaaaTGTGGTATAATGGGCTCGCTatgtaaagtacatatgcgtaacacgtaaa
                     a"
                     /listShort="S68, ybbP, ybbR, glmM"
                     /listLong="NA, S69, glmS"
                     /label="promotor_-10"
     S_feature       196132..196212
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_196132_196212"
                     /HighExp="dia5, Diami, H2O2, dia15, G135, Cold, G180,
                     Paraq, G150, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigWXY, SigA"
                     /TUlongPSig="1, 1"
                     /label="S68"
     upshifts        196132
                     /Source="Nicolas_upshifts"
                     /id="U121"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.73026973026973"
                     /psig=1
                     /xcortree=1886
                     /SigmaFactorBS="tctttttttgcgggctgagagggctggcaCATTTCACttgct
                     aaatcgaaaTGTGGTATAATGGGCTCGCTatgtaaagtacatatgcgtaacacgtaaa
                     a"
                     /listShort="S68, ybbP, ybbR, glmM"
                     /listLong="NA, S69, glmS"
     CDS             196213..197034
                     /gene="cdaA"
                     /locus_tag="BSU_01750"
                     /old_locus_tag="BSU01750"
                     /EC_number="2.7.7.85"
                     /function="16.13: Shape"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:19901023, 21566650, 23192352, 25605729, 25616256,
                     26240071, 28420751"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19901023, 21566650,
                     23192352, 25605729, 25616256, 26240071, 28420751; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase"
                     /protein_id="NP_388056.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01750"
                     /db_xref="EnsemblGenomes-Tr:CAB11951"
                     /db_xref="GOA:Q45589"
                     /db_xref="InterPro:IPR003390"
                     /db_xref="InterPro:IPR014046"
                     /db_xref="InterPro:IPR034701"
                     /db_xref="InterPro:IPR036888"
                     /db_xref="SubtiList:BG11577"
                     /db_xref="UniProtKB/Swiss-Prot:Q45589"
                     /translation="MAFEDIPFLQYLGNAVDILLVWYVIYKLIMVIRGTKAVQLLKGI
                     VVIVLVRMASQYLGLSTLQWLMDQAITWGFLAIIIIFQPELRRALEQLGRGRFFSRSG
                     TPVEEAQQKTIEAITKAINYMAKRRIGALLTIERDTGMGDYIETGIPLNAKVSSELLI
                     NIFIPNTPLHDGAVIMKNNEIAAAACYLPLSESPFISKELGTRHRAAVGISEVTDSLT
                     IIVSEETGGVSVAKNGDLHRELTEEALKEMLEAEFKKNTRDTSSNRWYWRGKKNG*"
     gene            196213..197034
                     /gene="cdaA"
                     /locus_tag="BSU_01750"
                     /old_locus_tag="BSU01750"
     CDS             197027..198478
                     /gene="cdaR"
                     /locus_tag="BSU_01760"
                     /old_locus_tag="BSU01760"
                     /experiment="publication(s) with functional evidences,
                     PMID:16236721, 17406245, 20094656, 21154411, 22720735,
                     23192352, 27074767"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16236721, 17406245,
                     20094656, 21154411, 22720735, 23192352, 27074767; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of diadenylate cyclase activity"
                     /protein_id="NP_388057.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01760"
                     /db_xref="EnsemblGenomes-Tr:CAB11952"
                     /db_xref="GOA:O34659"
                     /db_xref="InterPro:IPR012505"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="SubtiList:BG12703"
                     /db_xref="UniProtKB/Swiss-Prot:O34659"
                     /translation="MDKFLNNRWAVKIIALLFALLLYVAVNSNQAPTPKKPGESFFPT
                     STTDEATLTDIPVKAYYDDENYVVTGVPQTVNVTIKGSTSAVKKARQTKNFEIYADME
                     HLKTGTHKVELKAKNVSDGLTISINPSVTTVTIQERTTKSFPVEVEYYNKSKMKKGYS
                     PEQPIVSPKNVQITGSKNVIDNISLVKASVNLENADETIEKEAKVTVYDKDGNALPVD
                     VEPSVIKITVPVTSPSKKVPFKIERTGSLPDGVSIANIESSPSEVTVYGSQDVLDSLE
                     FIDGVSLDLSKINKDSDIEADIPLPDGVKKISPSKVTLHIEVDSEADQKFENVPIKTV
                     GLSSSQNIEFLDPESQAIDVTAKGSPTNINKLKKSDIELYVNVSDLEDGEHSVKLEVN
                     GPQNVTWSLGRKNAKIKLTSKKSNTSTNDNSSNTSGNQDTDKQTNDQKNNQQEDTKNT
                     DKNNNDQNQDGNKDQNQDQDEDESTANSQSSSE*"
     gene            197027..198478
                     /gene="cdaR"
                     /locus_tag="BSU_01760"
                     /old_locus_tag="BSU01760"
     CDS             198497..199843
                     /gene="glmM"
                     /locus_tag="BSU_01770"
                     /old_locus_tag="BSU01770"
                     /EC_number="5.4.2.10"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:10671448, 10913078, 12089032, 21154411, 26240071,
                     27074767"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10671448, 10913078,
                     12089032, 21154411, 26240071, 27074767; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="NP_388058.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01770"
                     /db_xref="EnsemblGenomes-Tr:CAB11953"
                     /db_xref="GOA:O34824"
                     /db_xref="InterPro:IPR005841"
                     /db_xref="InterPro:IPR005843"
                     /db_xref="InterPro:IPR005844"
                     /db_xref="InterPro:IPR005845"
                     /db_xref="InterPro:IPR005846"
                     /db_xref="InterPro:IPR006352"
                     /db_xref="InterPro:IPR016055"
                     /db_xref="InterPro:IPR016066"
                     /db_xref="InterPro:IPR036900"
                     /db_xref="SubtiList:BG12704"
                     /db_xref="UniProtKB/Swiss-Prot:O34824"
                     /translation="MGKYFGTDGVRGVANSELTPELAFKVGRFGGYVLTKDKQRPKVL
                     IGRDTRISGHMLEGALVAGLLSIGAEVMRLGVISTPGVSYLTKAMDAEAGVMISASHN
                     PVQDNGIKFFGGDGFKLSDEQEAEIERLMDEPEDKLPRPVGADLGLVNDYFEGGQKYL
                     QFLKQTADEDFTGIHVALDCANGATSSLATHLFADLDADVSTMGTSPNGLNINDGVGS
                     THPEALSAFVKEKNADLGLAFDGDGDRLIAVDEKGNIVDGDQIMYICSKHLKSEGRLK
                     DDTVVSTVMSNLGFYKALEKEGIKSVQTAVGDRYVVEAMKKDGYNVGGEQSGHLIFLD
                     YNTTGDGLLSAIMLMNTLKATGKPLSELAAEMQKFPQLLVNVRVTDKYKVEENEKVKA
                     VISEVEKEMNGDGRILVRPSGTEPLVRVMAEAKTKELCDEYVNRIVEVVRSEMGLE*"
     gene            198497..199843
                     /gene="glmM"
                     /locus_tag="BSU_01770"
                     /old_locus_tag="BSU01770"
     downshifts      199838
                     /Source="Nicolas_upshifts"
                     /id="D64"
                     /incds=0
                     /nref=126
                     /ntot=216
                     /MaxReadThrough="5.32721"
                     /MaxDrop="5.02497"
                     /score="13.5044076"
                     /energy="-17.5"
                     /TU="U121"
                     /idTUdmin="U121"
                     /TUdmin="-110"
                     /isTUend="FALSE"
     promotor_-35    199862..199870
                     /Source="Nicolas_upshift_promotors"
                     /id="U122"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.754245754245754"
                     /psig="0.754245754245754"
                     /xcortree=649
                     /SigmaFactorBS="tccggtcagaaatgggattagagtaacgaagtctattatcag
                     agAGTGAACAAgacaagcgaggttTACATAAGATAATTGTGAGAcatacggcaaagtt
                     g"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        199878
                     /Source="Nicolas_upshifts"
                     /id="U122"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.754245754245754"
                     /psig="0.754245754245754"
                     /xcortree=649
                     /SigmaFactorBS="tccggtcagaaatgggattagagtaacgaagtctattatcag
                     agAGTGAACAAgacaagcgaggttTACATAAGATAATTGTGAGAcatacggcaaagtt
                     g"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
     promotor_-10    199884..199903
                     /Source="Nicolas_upshift_promotors"
                     /id="U122"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.754245754245754"
                     /psig="0.754245754245754"
                     /xcortree=649
                     /SigmaFactorBS="tccggtcagaaatgggattagagtaacgaagtctattatcag
                     agAGTGAACAAgacaagcgaggttTACATAAGATAATTGTGAGAcatacggcaaagtt
                     g"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    199930..199935
                     /Source="Nicolas_upshift_promotors"
                     /id="U123"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.623376623376623"
                     /psig="0.999000999001"
                     /xcortree=1722
                     /SigmaFactorBS="tgtgagacatacggcaaagttgcttaaaaaacaATTGACcgt
                     ttatgccacatgTTGTAAAATCAAGCTTGTCTtgttcttattttctcaataggaaaag
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    199951..199970
                     /Source="Nicolas_upshift_promotors"
                     /id="U123"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.623376623376623"
                     /psig="0.999000999001"
                     /xcortree=1722
                     /SigmaFactorBS="tgtgagacatacggcaaagttgcttaaaaaacaATTGACcgt
                     ttatgccacatgTTGTAAAATCAAGCTTGTCTtgttcttattttctcaataggaaaag
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        199957
                     /Source="Nicolas_upshifts"
                     /id="U123"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.623376623376623"
                     /psig="0.999000999001"
                     /xcortree=1722
                     /SigmaFactorBS="tgtgagacatacggcaaagttgcttaaaaaacaATTGACcgt
                     ttatgccacatgTTGTAAAATCAAGCTTGTCTtgttcttattttctcaataggaaaag
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
     misc_feature    200001..200017
                     /Source="Nicolas_upshift_promotors"
                     /id="U124"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.497502497502497"
                     /psig="0.497502497502497"
                     /xcortree=336
                     /SigmaFactorBS="taaaatcaagcttgtcttgttcttattttctcaataggaaaa
                     gaagaCGGGATTATTGCTTTACctataattatagcgcccgaactaagcgcccggaaaa
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        200014
                     /Source="Nicolas_upshifts"
                     /id="U124"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.497502497502497"
                     /psig="0.497502497502497"
                     /xcortree=336
                     /SigmaFactorBS="taaaatcaagcttgtcttgttcttattttctcaataggaaaa
                     gaagaCGGGATTATTGCTTTACctataattatagcgcccgaactaagcgcccggaaaa
                     a"
                     /listShort="NA, S69, glmS"
                     /GFF_Attribute="listLong"
     misc_RNA        200017..200187
                     /gene="glmSA"
                     /locus_tag="BSU_misc_RNA_5"
                     /product="riboswitch and ribozyme (GlmS-glucosamine-6-P)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16298301, 16484375, 16990543, 17114942, 17283212,
                     18079181, 19228039, 21317896, 21395279, 21936556,
                     25038539, 26240071, 28012261"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16298301, 16484375,
                     16990543, 17114942, 17283212, 18079181, 19228039,
                     21317896, 21395279, 21936556, 25038539, 26240071,
                     28012261; Product type n: RNA"
     gene            200017..200187
                     /gene="glmSA"
                     /locus_tag="BSU_misc_RNA_5"
     S_feature       200188..200276
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_200188_200276"
                     /HighExp="M40t90, M0t90, M9-stat, Lbstat, T2.30H, T2.0H,
                     T3.0H, T1.30H, T1.0H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigK"
                     /TUshortPSig="0.498, 0.999, 0.754"
                     /TUlongSig="SigA, SigWXY, SigA"
                     /TUlongPSig="1, 1, 1"
                     /label="S69"
     CDS             200277..202079
                     /gene="glmS"
                     /locus_tag="BSU_01780"
                     /old_locus_tag="BSU01780"
                     /EC_number="2.6.1.16"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 15029187,
                     17114942, 17283212, 17322533, 23874669; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate
                     amidotransferase"
                     /protein_id="NP_388059.1"
                     /db_xref="EnsemblGenomes-Gn:BSU01780"
                     /db_xref="EnsemblGenomes-Tr:CAB11954"
                     /db_xref="GOA:P0CI73"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR005855"
                     /db_xref="InterPro:IPR017932"
                     /db_xref="InterPro:IPR029055"
                     /db_xref="InterPro:IPR035466"
                     /db_xref="InterPro:IPR035490"
                     /db_xref="SubtiList:BG10948"
                     /db_xref="UniProtKB/Swiss-Prot:P0CI73"
                     /translation="MCGIVGYIGQLDAKEILLKGLEKLEYRGYDSAGIAVANEQGIHV
                     FKEKGRIADLREVVDANVEAKAGIGHTRWATHGEPSYLNAHPHQSALGRFTLVHNGVI
                     ENYVQLKQEYLQDVELKSDTDTEVVVQVIEQFVNGGLETEEAFRKTLTLLKGSYAIAL
                     FDNDNRETIFVAKNKSPLLVGLGDTFNVVASDAMAMLQVTNEYVELMDKEMVIVTDDQ
                     VVIKNLDGDVITRASYIAELDASDIEKGTYPHYMLKETDEQPVVMRKIIQTYQDENGK
                     LSVPGDIAAAVAEADRIYIIGCGTSYHAGLVGKQYIEMWANVPVEVHVASEFSYNMPL
                     LSKKPLFIFLSQSGETADSRAVLVQVKALGHKALTITNVPGSTLSREADYTLLLHAGP
                     EIAVASTKAYTAQIAVLAVLASVAADKNGINIGFDLVKELGIAANAMEALCDQKDEME
                     MIAREYLTVSRNAFFIGRGLDYFVCVEGALKLKEISYIQAEGFAGGELKHGTIALIEQ
                     GTPVFALATQEHVNLSIRGNVKEVAARGANTCIISLKGLDDADDRFVLPEVNPALAPL
                     VSVVPLQLIAYYAALHRGCDVDKPRNLAKSVTVE*"
     gene            200277..202079
                     /gene="glmS"
                     /locus_tag="BSU_01780"
                     /old_locus_tag="BSU01780"
     S_feature       complement(201802..>202082)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_201802_202546_c"
                     /HighExp="S8, S7, S6, S5, S4, BC, S3, Sw, C30, LoTm"
                     /AntisenseName="glmS"
                     /AntisenseCor="4.5056549205256403E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.963"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S70"
     downshifts      202065
                     /Source="Nicolas_upshifts"
                     /id="D65"
                     /incds=0
                     /nref=260
                     /ntot=277
                     /MaxReadThrough="3.18134"
                     /MaxDrop="7.61794"
                     /score="13.5044076"
                     /energy="-17.5"
                     /TU="NA"
                     /idTUdmin="U122"
                     /TUdmin=2
                     /isTUend="TRUE"
     SCAR            join(202082,202128)
                     /created_by="User"
                     /note="deletion occured in betwen marked nucleotides"
                     /modified_by="User"
                     /label="Delta4"
     N_region        202083..202127
                     /note="insertion of 45 bases of unknown origin"
                     /modified_by="User"
                     /label="Delta4"
     S_feature       <202128..202246
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_220105_220278"
                     /HighExp="LoTm, T5.0H, T4.0H, T3.30H, Pyr, T-2.40H, T3.0H,
                     T-5.40H, S2, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.984"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S79"
     CDS             202247..203224
                     /gene="ybdG"
                     /locus_tag="BSU_01990"
                     /old_locus_tag="BSU01990"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase/transferase"
                     /protein_id="NP_388081.2"
                     /db_xref="EnsemblGenomes-Gn:BSU01990"
                     /db_xref="EnsemblGenomes-Tr:CAB11993"
                     /db_xref="GOA:O31431"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12722"
                     /db_xref="UniProtKB/Swiss-Prot:O31431"
                     /translation="MKTLWKVLKIVFVSLAALVLLVSVSVFIYHHFQLNKEAALLKGK
                     GTVVDVDGKKMNVYQEGSGKDTFVFMSGSGIAAPAYEMKGLYSKFSKENKIAVVDRAG
                     YGYSEVSHDDRDIDTVLEQTRKALMKSGNKPPYILMPHSISGIEAMYWAQKYPKEIKA
                     IIAMDIGLPQQYVTYKLSGVDRLKVRGFHLLTSIGFHRFIPSAVYNPEVIRQSFLTDE
                     EKEIYKAINFKQFFNADMEHELLQSYQNGSKSVNLPAPKETPVLILDAVSDQNRHSKY
                     AIQNRKDYEAFAAQFNTADIKELRGTHSIYLYQPDQIYKLSMEFMRKVR*"
     gene            202247..203224
                     /gene="ybdG"
                     /locus_tag="BSU_01990"
                     /old_locus_tag="BSU01990"
     CDS             203226..203897
                     /gene="ybdJ"
                     /locus_tag="BSU_02000"
                     /old_locus_tag="BSU02000"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 20035725"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 20035725;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator [YbdK]"
                     /protein_id="NP_388082.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02000"
                     /db_xref="EnsemblGenomes-Tr:CAB11994"
                     /db_xref="GOA:O31432"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR001867"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12723"
                     /db_xref="UniProtKB/Swiss-Prot:O31432"
                     /translation="MKGYRILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVLSVIQ
                     KVDLVIMDVMLPGEDGYQMSAKIKKLGLGIPVIFLSARNDMDSKLQGLQIGEDYMVKP
                     FDPRELLLRMRNMLEHHYGTFTQIKHLYIDAVTKKVFNESLHDEVLFTAIERKIFFYL
                     YENRDSILTKEHFFEYLWQLEDRNPNIVNVHIKKIRAKINDQAGEMIENIYGEGYRLN
                     TVVKK*"
     gene            203226..203897
                     /gene="ybdJ"
                     /locus_tag="BSU_02000"
                     /old_locus_tag="BSU02000"
     promotor_-35    203791..203797
                     /Source="Nicolas_upshift_promotors"
                     /id="U135"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.929070929070929"
                     /xcortree=2962
                     /SigmaFactorBS="gatagaaacccgaatattgtcaATGTGCAtattaaaaaaatt
                     AGAGCTAAAATCAATGATCAagcgggtgagatgattgaaaatatatatggagaagggt
                     a"
                     /listShort="ybdK, ybzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    203811..203830
                     /Source="Nicolas_upshift_promotors"
                     /id="U135"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.929070929070929"
                     /xcortree=2962
                     /SigmaFactorBS="gatagaaacccgaatattgtcaATGTGCAtattaaaaaaatt
                     AGAGCTAAAATCAATGATCAagcgggtgagatgattgaaaatatatatggagaagggt
                     a"
                     /listShort="ybdK, ybzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        203829
                     /Source="Nicolas_upshifts"
                     /id="U135"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.929070929070929"
                     /xcortree=2962
                     /SigmaFactorBS="gatagaaacccgaatattgtcaATGTGCAtattaaaaaaatt
                     AGAGCTAAAATCAATGATCAagcgggtgagatgattgaaaatatatatggagaagggt
                     a"
                     /listShort="ybdK, ybzI"
                     /GFF_Attribute="listLong"
     CDS             203918..204880
                     /gene="ybdK"
                     /locus_tag="BSU_02010"
                     /old_locus_tag="BSU02010"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 20035725"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 20035725;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     [YbdJ]"
                     /protein_id="NP_388083.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02010"
                     /db_xref="EnsemblGenomes-Tr:CAB11995"
                     /db_xref="GOA:O31433"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12724"
                     /db_xref="UniProtKB/Swiss-Prot:O31433"
                     /translation="MLLFTAVISVPMLLLAVSVLMSVIYDSMFKPMNHGMPFHRSFAY
                     PAMIVVFLISLLLLAFLFSKSIHSLLHKINLLNQTIRHLASDQRVPDKIEVKRADEIG
                     ELIKSVNLLIERTTYRELELRQQEEIKKELLQKLRHDINTPLTALRLQLFYLEDQCHG
                     QAVFESLYQQIEYISELTNEFNLYSAETLESSYIVNEEVRLNELLETAVKKWDYLYSM
                     SGIELHYKPADQDVIWMSNTLWMERLFDNIFQNTLRHSKAKKMEVTIEHGDVFIRDDG
                     IGFDRNESSEGLGLKIIEDTCRLLAITYELHTNDNGTGFLFSKE*"
     gene            203918..204880
                     /gene="ybdK"
                     /locus_tag="BSU_02010"
                     /old_locus_tag="BSU02010"
     promotor_-35    204892..204894
                     /Source="Nicolas_upshift_promotors"
                     /id="U136"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.999000999001"
                     /xcortree=2204
                     /SigmaFactorBS="aacggggttcttgttttcaaaagagtgaccccgctgatgTTT
                     ttctttctcctataaAATTTATATAATAGGGAGAAagaaatggggtgaacatcatatg
                     t"
                     /listShort="ybzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    204910..204929
                     /Source="Nicolas_upshift_promotors"
                     /id="U136"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.999000999001"
                     /xcortree=2204
                     /SigmaFactorBS="aacggggttcttgttttcaaaagagtgaccccgctgatgTTT
                     ttctttctcctataaAATTTATATAATAGGGAGAAagaaatggggtgaacatcatatg
                     t"
                     /listShort="ybzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        204913
                     /Source="Nicolas_upshifts"
                     /id="U136"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.999000999001"
                     /xcortree=2204
                     /SigmaFactorBS="aacggggttcttgttttcaaaagagtgaccccgctgatgTTT
                     ttctttctcctataaAATTTATATAATAGGGAGAAagaaatggggtgaacatcatatg
                     t"
                     /listShort="ybzI"
                     /GFF_Attribute="listLong"
     CDS             204939..205202
                     /gene="ybzI"
                     /locus_tag="BSU_02019"
                     /old_locus_tag="BSU02019"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="YP_003097672.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02019"
                     /db_xref="EnsemblGenomes-Tr:CAX52542"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3T1"
                     /translation="MNIICLKKSSKRLSTSQAVLVTDIADTGITAAAGADIIAATAAV
                     RAKEDTTTVMAAVIVTNAGATAAVNPKKVLVPLLGQGFFYVTD*"
     gene            204939..205202
                     /gene="ybzI"
                     /locus_tag="BSU_02019"
                     /old_locus_tag="BSU02019"
     downshifts      205143
                     /Source="Nicolas_upshifts"
                     /id="D73"
                     /incds=0
                     /nref=120
                     /ntot=235
                     /MaxReadThrough="2.82444"
                     /MaxDrop="4.652"
                     /score="22.3698707"
                     /energy="-12.1"
                     /TU="U135"
                     /idTUdmin="U136"
                     /TUdmin="-6"
                     /isTUend="TRUE"
     CDS             complement(205187..205957)
                     /gene="ybdM"
                     /locus_tag="BSU_02030"
                     /old_locus_tag="BSU02030"
                     /EC_number="2.7.11.-"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 21304896; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein kinase"
                     /protein_id="NP_388085.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02030"
                     /db_xref="EnsemblGenomes-Tr:CAB11997"
                     /db_xref="GOA:O31435"
                     /db_xref="InterPro:IPR000719"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="InterPro:IPR017441"
                     /db_xref="SubtiList:BG12726"
                     /db_xref="UniProtKB/Swiss-Prot:O31435"
                     /translation="MALKLLKKLLFDRPLKNGVILNHQYKIEECLGMGGYGLVYLCTD
                     ILAQTPYVLKQLRPTKAKKEKEKVRFQQEIKLLKNIHHPQIPGFIDEFIIDGQAYYVM
                     QFIEGENIEELLFFRKQPFTELMALQLISQLLEIIEYLHDRLIFHSDIRTPNIIINDG
                     RLCLIDFGLAKQLTPEEMEEIKVRKQDDFFDLGETLLFLLYSQYKGKKKKNGTWLEEL
                     TLTKEVTLLLKRLLGIEEEYQHTASIREDLNRAIQSVT*"
     gene            complement(205187..205957)
                     /gene="ybdM"
                     /locus_tag="BSU_02030"
                     /old_locus_tag="BSU02030"
     CDS             complement(206043..206900)
                     /gene="ybdN"
                     /locus_tag="BSU_02040"
                     /old_locus_tag="BSU02040"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16794953; Product type
                     h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein; prophage region 1"
                     /protein_id="NP_388086.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02040"
                     /db_xref="EnsemblGenomes-Tr:CAB11998"
                     /db_xref="SubtiList:BG12727"
                     /db_xref="UniProtKB/Swiss-Prot:O31436"
                     /translation="MVKKWLIQFAVMLSVLSTFTYSASAVGVTAITGNNSFDTAMPIG
                     YWKYKNIDTTILEAGQDEAYFTFTANKGEKVYMRSTYQSAYTGMKIEIYDKNRIPVSQ
                     GTEVINPNTFSSFIYANADAQNTTDTFYVKVSRGTYTGNMYFTLSIEDRIKSGSGTFQ
                     FSGVAENKGNTSLSPSGSDSSVIKVDLTNQSGIPRDAIVTRVQTTATQTPSQGNTRHL
                     IMTSENNEWSRALVNSSTSGSYDISLSDQLSVAKVWSFKYNTLATARSTMSNVKAKID
                     YEYDVTKQF*"
     gene            complement(206043..206900)
                     /gene="ybdN"
                     /locus_tag="BSU_02040"
                     /old_locus_tag="BSU02040"
     downshifts      complement(206065)
                     /Source="Nicolas_upshifts"
                     /id="D74"
                     /incds=0
                     /nref=95
                     /ntot=184
                     /MaxReadThrough="1.56932"
                     /MaxDrop="4.95806"
                     /score="36.4950689"
                     /energy="-11.9"
                     /TU="NA"
                     /idTUdmin="U137"
                     /TUdmin="-4"
                     /isTUend="TRUE"
     promotor_-10    complement(206114..206133)
                     /Source="Nicolas_upshift_promotors"
                     /id="U137"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=1343
                     /SigmaFactorBS="ttgtaaacagctcgacttcagggtcttatgatatctctttgt
                     cggatcaactcAGTGTGGCAAaggtatggagtttTAAATATAATACATTAGCGAcagc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(206147..206156)
                     /Source="Nicolas_upshift_promotors"
                     /id="U137"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=1343
                     /SigmaFactorBS="ttgtaaacagctcgacttcagggtcttatgatatctctttgt
                     cggatcaactcAGTGTGGCAAaggtatggagtttTAAATATAATACATTAGCGAcagc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(206149)
                     /Source="Nicolas_upshifts"
                     /id="U137"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=1343
                     /SigmaFactorBS="ttgtaaacagctcgacttcagggtcttatgatatctctttgt
                     cggatcaactcAGTGTGGCAAaggtatggagtttTAAATATAATACATTAGCGAcagc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(206913..206932)
                     /Source="Nicolas_upshift_promotors"
                     /id="U138"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2923
                     /SigmaFactorBS="ttttatcggcgaatataatgtatatattaacctcaaaaaaca
                     ttTATTTACAcctaaatcgttattATGTATGATGGAAATAAAAGgaggttgtttgcat
                     g"
                     /listShort="ybdN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(206938)
                     /Source="Nicolas_upshifts"
                     /id="U138"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2923
                     /SigmaFactorBS="ttttatcggcgaatataatgtatatattaacctcaaaaaaca
                     ttTATTTACAcctaaatcgttattATGTATGATGGAAATAAAAGgaggttgtttgcat
                     g"
                     /listShort="ybdN"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(206947..206954)
                     /Source="Nicolas_upshift_promotors"
                     /id="U138"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2923
                     /SigmaFactorBS="ttttatcggcgaatataatgtatatattaacctcaaaaaaca
                     ttTATTTACAcctaaatcgttattATGTATGATGGAAATAAAAGgaggttgtttgcat
                     g"
                     /listShort="ybdN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    206968..206975
                     /Source="Nicolas_upshift_promotors"
                     /id="U139"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2834
                     /SigmaFactorBS="ataataacgatttaggtgtaaataaatgttttttgagGTTAA
                     TATatacattatattcGCCGATAAAAAAGAATAAGagagaatactcgggagggaattc
                     a"
                     /listShort="ybdO"
                     /listLong="S80, ybxG"
                     /label="promotor_-35"
     promotor_-10    206989..207007
                     /Source="Nicolas_upshift_promotors"
                     /id="U139"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2834
                     /SigmaFactorBS="ataataacgatttaggtgtaaataaatgttttttgagGTTAA
                     TATatacattatattcGCCGATAAAAAAGAATAAGagagaatactcgggagggaattc
                     a"
                     /listShort="ybdO"
                     /listLong="S80, ybxG"
                     /label="promotor_-10"
     upshifts        206991
                     /Source="Nicolas_upshifts"
                     /id="U139"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2834
                     /SigmaFactorBS="ataataacgatttaggtgtaaataaatgttttttgagGTTAA
                     TATatacattatattcGCCGATAAAAAAGAATAAGagagaatactcgggagggaattc
                     a"
                     /listShort="ybdO"
                     /listLong="S80, ybxG"
     CDS             207032..208216
                     /gene="ybdO"
                     /locus_tag="BSU_02050"
                     /old_locus_tag="BSU02050"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15033535; Product type
                     h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein; prophage region 1"
                     /protein_id="NP_388087.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02050"
                     /db_xref="EnsemblGenomes-Tr:CAB11999"
                     /db_xref="InterPro:IPR032617"
                     /db_xref="SubtiList:BG12728"
                     /db_xref="UniProtKB/Swiss-Prot:O31437"
                     /translation="MRLNRQFIRTQLIAQNILSKNAPAKRENATENPAAVLEKAYSRL
                     KSQSSTGGINQFNYSKTSVSGNSGTFSKVYQSANDRTVTDTGEETVIQSQNPYESESD
                     IRIKILDEKYSRMNAINKTKSDPLGYIKDKYQNSKSPYFRSDLSAAERQAAYDNETEW
                     LFKGKAQNYNLQDAVFRNVTFHGEVEAENEKVYQRGQVNQQLQVLLNRNHIHIPEGTE
                     LTFTITPIDYQVRVSGTDDQDLIKQIEQVLQSGDNSKELFLHIMKSQSSDSAQFSEEA
                     YKKYQAAREMYEVTGYHLKDLEVIDGRYVTPEGRDLMDVYKEELEKDPVQKQTASYAI
                     SYYRSELSKIAEAGYNAIPDFILSIDYSNGSLRDVGQSKSYGTGDTGWLEALKRQTGV
                     NY*"
     gene            207032..208216
                     /gene="ybdO"
                     /locus_tag="BSU_02050"
                     /old_locus_tag="BSU02050"
     downshifts      208202
                     /Source="Nicolas_upshifts"
                     /id="D75"
                     /incds=0
                     /nref=107
                     /ntot=207
                     /MaxReadThrough="2.98334"
                     /MaxDrop="4.9582"
                     /score="-3.87053033"
                     /energy="-8.3"
                     /TU="U139"
                     /idTUdmin="U139"
                     /TUdmin="-181"
                     /isTUend="FALSE"
     promotor_-35    208370..208376
                     /Source="Nicolas_upshift_promotors"
                     /id="U140"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.430569430569431"
                     /psig="0.999000999001"
                     /xcortree=2998
                     /SigmaFactorBS="aacaaaggtgtttacctgaaaaaaacAATTGTAttttccaga
                     gaaaTTTATTATGATGAAATAAGTaatttaggagattatataacaattttaagtttga
                     a"
                     /listShort="S80, ybxG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    208390..208409
                     /Source="Nicolas_upshift_promotors"
                     /id="U140"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.430569430569431"
                     /psig="0.999000999001"
                     /xcortree=2998
                     /SigmaFactorBS="aacaaaggtgtttacctgaaaaaaacAATTGTAttttccaga
                     gaaaTTTATTATGATGAAATAAGTaatttaggagattatataacaattttaagtttga
                     a"
                     /listShort="S80, ybxG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       208404..208533
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_226436_226565"
                     /HighExp="Glu, LoTm, M9-stat, G135, GM-0.2, T-0.40H, Fru,
                     UNK1, MG 120, GM-0.1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigD"
                     /TUlongPSig=1
                     /label="S80"
     upshifts        208404
                     /Source="Nicolas_upshifts"
                     /id="U140"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.430569430569431"
                     /psig="0.999000999001"
                     /xcortree=2998
                     /SigmaFactorBS="aacaaaggtgtttacctgaaaaaaacAATTGTAttttccaga
                     gaaaTTTATTATGATGAAATAAGTaatttaggagattatataacaattttaagtttga
                     a"
                     /listShort="S80, ybxG"
                     /GFF_Attribute="listLong"
     CDS             208534..209922
                     /gene="ybxG"
                     /locus_tag="BSU_02060"
                     /old_locus_tag="BSU02060"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amino acid permease"
                     /protein_id="NP_388088.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02060"
                     /db_xref="EnsemblGenomes-Tr:CAB12000"
                     /db_xref="GOA:P54425"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004840"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="SubtiList:BG11505"
                     /db_xref="UniProtKB/Swiss-Prot:P54425"
                     /translation="MANKELKRGLGARHIQMIALGGTIGVGLFMGSASTISWTGPSVL
                     LAYAICGIFIFFIMRAMGEMLYVEPSTGSFATFGHQYIHPMAGYITAWSNWFQWIIVG
                     MSEIIAVGSYTKYWFPDLPAWIPGIVAMVILGAANLISVKSFGEFEFWFAMIKIVTII
                     LMIIAGIGIIFFGFGNGGDAIGLSNLWSHGGFFAGGFSGFFFALSLVIAAYQGVELIG
                     ITAGEAKDPQNTLRNAIQSIIWRILIFYIGAIFVIVTVYPWDELNSLGSPFVSTFSKI
                     GITAAAGIINFVVITAAMSGCNSGIFSAGRMLYTLGVNGQAPKFFKKISRNGVPLYGT
                     IAVLIGLAVGVVLNYIAPPKIFVYVYSASVLPGMIPWFIILISHIGFRKAKGAALDKH
                     PFKMPFAPFTNYLTIAFLLMVLVGMWFNDDTRISLIVGVIFLALVVISYYVFGIGKRT
                     QANLTKSEQAAE*"
     gene            208534..209922
                     /gene="ybxG"
                     /locus_tag="BSU_02060"
                     /old_locus_tag="BSU02060"
     downshifts      209930
                     /Source="Nicolas_upshifts"
                     /id="D76"
                     /incds=0
                     /nref=121
                     /ntot=219
                     /MaxReadThrough="2.32902"
                     /MaxDrop="5.72049"
                     /score="28.6554212"
                     /energy="-8.5"
                     /TU="NA"
                     /idTUdmin="U140"
                     /TUdmin="-15"
                     /isTUend="TRUE"
     promotor_-35    209968..209974
                     /Source="Nicolas_upshift_promotors"
                     /id="U141"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=938
                     /SigmaFactorBS="aaaagagacattcacggatgtctctttttttatttttcgCGT
                     ATGGattttccctatttTAGCAAGCTATAgggtaaagatagcagaaggaaaggtgttc
                     a"
                     /listShort="csgA, ybxH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    209988..209999
                     /Source="Nicolas_upshift_promotors"
                     /id="U141"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=938
                     /SigmaFactorBS="aaaagagacattcacggatgtctctttttttatttttcgCGT
                     ATGGattttccctatttTAGCAAGCTATAgggtaaagatagcagaaggaaaggtgttc
                     a"
                     /listShort="csgA, ybxH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        209989
                     /Source="Nicolas_upshifts"
                     /id="U141"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=938
                     /SigmaFactorBS="aaaagagacattcacggatgtctctttttttatttttcgCGT
                     ATGGattttccctatttTAGCAAGCTATAgggtaaagatagcagaaggaaaggtgttc
                     a"
                     /listShort="csgA, ybxH"
                     /GFF_Attribute="listLong"
     CDS             210034..210282
                     /gene="csgA"
                     /locus_tag="BSU_02070"
                     /old_locus_tag="BSU02070"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:9016963"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9016963; Product type cp:
                     cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific SASP protein"
                     /protein_id="NP_388089.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02070"
                     /db_xref="EnsemblGenomes-Tr:CAB12001"
                     /db_xref="GOA:P54379"
                     /db_xref="InterPro:IPR020255"
                     /db_xref="SubtiList:BG11504"
                     /db_xref="UniProtKB/Swiss-Prot:P54379"
                     /translation="MDVTLGYLRESLSNHLENEVCQRICKKMLAKRYANEEEFVKDLD
                     DNEMSFLNHVLEKEIKYAQNEQDQKRAKELNEVYELLL*"
     gene            210034..210282
                     /gene="csgA"
                     /locus_tag="BSU_02070"
                     /old_locus_tag="BSU02070"
     CDS             210299..210490
                     /gene="ybxH"
                     /locus_tag="BSU_02080"
                     /old_locus_tag="BSU02080"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388090.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02080"
                     /db_xref="EnsemblGenomes-Tr:CAB12002"
                     /db_xref="InterPro:IPR035314"
                     /db_xref="SubtiList:BG11506"
                     /db_xref="UniProtKB/Swiss-Prot:P54426"
                     /translation="MGAIERSGYTFQPEFSVVRQNGAIHVYHQGEFVEEIEFEFNGEY
                     PDHDLIEELVNHYCFEHEI*"
     gene            210299..210490
                     /gene="ybxH"
                     /locus_tag="BSU_02080"
                     /old_locus_tag="BSU02080"
     downshifts      210472
                     /Source="Nicolas_upshifts"
                     /id="D77"
                     /incds=0
                     /nref=17
                     /ntot=40
                     /MaxReadThrough="0.194030000000001"
                     /MaxDrop="4.779"
                     /score="29.4617878"
                     /energy="-15.6"
                     /TU="NA"
                     /idTUdmin="U141"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(210517..211320)
                     /gene="ybxI"
                     /locus_tag="BSU_02090"
                     /old_locus_tag="BSU02090"
                     /EC_number="3.5.2.6"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14742199"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14742199; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="exported beta-lactamase"
                     /protein_id="NP_388091.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02090"
                     /db_xref="EnsemblGenomes-Tr:CAB12003"
                     /db_xref="GOA:P54427"
                     /db_xref="InterPro:IPR001460"
                     /db_xref="InterPro:IPR002137"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="PDB:5E2F"
                     /db_xref="SubtiList:BG11507"
                     /db_xref="UniProtKB/Swiss-Prot:P54427"
                     /translation="MKKWIYVVLVLSIAGIGGFSVHAASSAHEKHLNVSKMNVDDEFK
                     DTDGTFILHDLQKDQTFVYNRKRANQRQTPQSTFKVVNALIGLQVKAVRDEYDVKRWD
                     GVKREFESWNRDHTLGSAMRESAIWYYQALARDIGEERMKTWLHTLSYGNEDISGGID
                     QFWLQSSLTISPLEQETFLEKLAKEELPFDKPVMKIVKRMMIQEEGDHYTLYGKTGTR
                     LTDMGLGWFVGFIKTEHGSYVFVTNVDDSGTKAKNITVDILKKYGLITS*"
     gene            complement(210517..211320)
                     /gene="ybxI"
                     /locus_tag="BSU_02090"
                     /old_locus_tag="BSU02090"
     promotor_-10    complement(211342..211360)
                     /Source="Nicolas_upshift_promotors"
                     /id="U142"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=3196
                     /SigmaFactorBS="accaaatttaagcgctttttgattattttttAAAGGAAGAac
                     aaacgaaaGAGAGAAAAGGTAGTTAATcaaaacgaaggggagaacaaaatgaaaaaat
                     g"
                     /listShort="ybxI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(211350)
                     /Source="Nicolas_upshifts"
                     /id="U142"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=3196
                     /SigmaFactorBS="accaaatttaagcgctttttgattattttttAAAGGAAGAac
                     aaacgaaaGAGAGAAAAGGTAGTTAATcaaaacgaaggggagaacaaaatgaaaaaat
                     g"
                     /listShort="ybxI"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(211371..211379)
                     /Source="Nicolas_upshift_promotors"
                     /id="U142"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=3196
                     /SigmaFactorBS="accaaatttaagcgctttttgattattttttAAAGGAAGAac
                     aaacgaaaGAGAGAAAAGGTAGTTAATcaaaacgaaggggagaacaaaatgaaaaaat
                     g"
                     /listShort="ybxI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    211434..211440
                     /Source="Nicolas_upshift_promotors"
                     /id="U143"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=163
                     /SigmaFactorBS="taaatttggttttgcaaacaaatactgttactgGGTTTATag
                     tcggaagataacGTGAAAATAGAGGGTAAAAaggaaggcagggtaagcggatgaatga
                     g"
                     /listShort="cypC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    211455..211473
                     /Source="Nicolas_upshift_promotors"
                     /id="U143"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=163
                     /SigmaFactorBS="taaatttggttttgcaaacaaatactgttactgGGTTTATag
                     tcggaagataacGTGAAAATAGAGGGTAAAAaggaaggcagggtaagcggatgaatga
                     g"
                     /listShort="cypC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        211461
                     /Source="Nicolas_upshifts"
                     /id="U143"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=163
                     /SigmaFactorBS="taaatttggttttgcaaacaaatactgttactgGGTTTATag
                     tcggaagataacGTGAAAATAGAGGGTAAAAaggaaggcagggtaagcggatgaatga
                     g"
                     /listShort="cypC"
                     /GFF_Attribute="listLong"
     CDS             211493..212746
                     /gene="cypC"
                     /locus_tag="BSU_02100"
                     /old_locus_tag="BSU02100"
                     /EC_number="1.11.2.4"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10529095, 12519760, 21673922"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10529095, 12519760,
                     21673922; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid beta-hydroxylating cytochrome P450"
                     /protein_id="NP_388092.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02100"
                     /db_xref="EnsemblGenomes-Tr:CAB12004"
                     /db_xref="GOA:O31440"
                     /db_xref="InterPro:IPR001128"
                     /db_xref="InterPro:IPR002401"
                     /db_xref="InterPro:IPR036396"
                     /db_xref="PDB:1IZO"
                     /db_xref="PDB:2ZQJ"
                     /db_xref="PDB:2ZQX"
                     /db_xref="SubtiList:BG12729"
                     /db_xref="UniProtKB/Swiss-Prot:O31440"
                     /translation="MNEQIPHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGK
                     NFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQGMDGSAHIHRKMLFLSL
                     MTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGVPLKETEVK
                     ERADDFIDMVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMA
                     FHTQEDGSQLDSRMAAIELINVLRPIVAISYFLVFSALALHEHPKYKEWLRSGNSRER
                     EMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEF
                     RPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQS
                     LHYSLARMPSLPESGFVMSGIRRKS*"
     gene            211493..212746
                     /gene="cypC"
                     /locus_tag="BSU_02100"
                     /old_locus_tag="BSU02100"
     misc_feature    211805..211812
                     /Source="Nicolas_upshift_promotors"
                     /id="U144"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.013986013986014"
                     /xcortree=116
                     /SigmaFactorBS="atggcagcgcgcatatccatcggaagatgctttttctgtcat
                     tgatgacaCCGCCGCAtcaaaaacgtttggctgagttgatgacagaggagtggaaagc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        211815
                     /Source="Nicolas_upshifts"
                     /id="U144"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.013986013986014"
                     /xcortree=116
                     /SigmaFactorBS="atggcagcgcgcatatccatcggaagatgctttttctgtcat
                     tgatgacaCCGCCGCAtcaaaaacgtttggctgagttgatgacagaggagtggaaagc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      212739
                     /Source="Nicolas_upshifts"
                     /id="D78"
                     /incds=0
                     /nref=5
                     /ntot=36
                     /MaxReadThrough="2.65245"
                     /MaxDrop="6.12325"
                     /score="-7.42298703"
                     /energy="-14.7"
                     /TU="NA"
                     /idTUdmin="U143"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(212787..213047)
                     /gene="ybyB"
                     /locus_tag="BSU_02110"
                     /old_locus_tag="BSU02110"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388093.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02110"
                     /db_xref="EnsemblGenomes-Tr:CAB12005"
                     /db_xref="SubtiList:BG12754"
                     /db_xref="UniProtKB/Swiss-Prot:O31441"
                     /translation="MKQKLLLSGLAVSTVGITSYLLKDPSNRQKAREFIHSMKMKITK
                     QPDMETFPVDKAGHPDPQDIEDNKMVSEGSMYPVQYYDEKKK*"
     gene            complement(212787..213047)
                     /gene="ybyB"
                     /locus_tag="BSU_02110"
                     /old_locus_tag="BSU02110"
     downshifts      complement(212806)
                     /Source="Nicolas_upshifts"
                     /id="D79"
                     /incds=0
                     /nref=155
                     /ntot=247
                     /MaxReadThrough="3.63752"
                     /MaxDrop="7.83539"
                     /score="8.86703843"
                     /energy="-12.4"
                     /TU="U145"
                     /idTUdmin="U145"
                     /TUdmin="-387"
                     /isTUend="FALSE"
     promotor_-10    complement(213077..213095)
                     /Source="Nicolas_upshift_promotors"
                     /id="U145"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=227
                     /SigmaFactorBS="tactgttaattccaatgataaaaacacaacaGGTTTAGcaat
                     ttccaaaacGGGAATGATACAGGAAACActattcttaaaatagaaaggagtatcacca
                     t"
                     /listShort="ybyB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(213086)
                     /Source="Nicolas_upshifts"
                     /id="U145"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=227
                     /SigmaFactorBS="tactgttaattccaatgataaaaacacaacaGGTTTAGcaat
                     ttccaaaacGGGAATGATACAGGAAACActattcttaaaatagaaaggagtatcacca
                     t"
                     /listShort="ybyB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(213109..213115)
                     /Source="Nicolas_upshift_promotors"
                     /id="U145"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=227
                     /SigmaFactorBS="tactgttaattccaatgataaaaacacaacaGGTTTAGcaat
                     ttccaaaacGGGAATGATACAGGAAACActattcttaaaatagaaaggagtatcacca
                     t"
                     /listShort="ybyB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    213239..213246
                     /Source="Nicolas_upshift_promotors"
                     /id="U146"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=2207
                     /SigmaFactorBS="atatacattgacttattatagatttcagtcaaaattcgataa
                     aTATTGACAaagtaaagtaatcagAATAATAATATAATTAGCAAgagaatgtcatcat
                     a"
                     /listShort="ybeC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        213256
                     /Source="Nicolas_upshifts"
                     /id="U146"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=2207
                     /SigmaFactorBS="atatacattgacttattatagatttcagtcaaaattcgataa
                     aTATTGACAaagtaaagtaatcagAATAATAATATAATTAGCAAgagaatgtcatcat
                     a"
                     /listShort="ybeC"
                     /GFF_Attribute="listLong"
     promotor_-10    213262..213281
                     /Source="Nicolas_upshift_promotors"
                     /id="U146"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=2207
                     /SigmaFactorBS="atatacattgacttattatagatttcagtcaaaattcgataa
                     aTATTGACAaagtaaagtaatcagAATAATAATATAATTAGCAAgagaatgtcatcat
                     a"
                     /listShort="ybeC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             213316..214935
                     /gene="ybeC"
                     /locus_tag="BSU_02120"
                     /old_locus_tag="BSU02120"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative H+/amino acid transporter"
                     /protein_id="NP_388094.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02120"
                     /db_xref="EnsemblGenomes-Tr:CAB12006"
                     /db_xref="GOA:Q45577"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG12730"
                     /db_xref="UniProtKB/Swiss-Prot:Q45577"
                     /translation="MNQLHRRMGTFSLMMVGLGSMIGSGWLFGAWRAAQIAGPAAIIS
                     WVIGMVVILFIALSYSELGSMFPEAGGMVKYTQYSHGSFIGFIAGWANWIAIVSVIPV
                     EAVASVQYMSSWPWEWAKWTSGLVKNGTLTGEGLAFASVLLLIYFLLNYWTVNLFSKA
                     NSLITIFKIIIPGLTIGALLFVGFHGENFTGGQSIAPNGWASVLTAVATSGIVFAFNG
                     FQSPINMAGEAKNPGKSIPIAVVGSLFVATVIYVLLQIAFIGAVNPSDIAHGWSHLNF
                     NSPFADLAIALNINWLVIVLYADAFVSPSGTGITYTATTSRMIYGMEKNKYMPSIFGK
                     LHPIYGVPRQAMFFNLIVSFIFLFLFRGWGVLAEIISVATLISYITGPITVMTLRRTG
                     KDLYRPLRLKGLNVIAPLGFIFASLVLYWARWPLTGQVLFIILIGLPIYFYYQAKAKW
                     KGFGRNFKAGVWMVFYLLAMMVISYLGSDKFGGLNVIHYGWDMVLIAMVSLVFYVWAL
                     KSGYQTEYLKDAKEINSQLLNGQSEAAAGKE*"
     gene            213316..214935
                     /gene="ybeC"
                     /locus_tag="BSU_02120"
                     /old_locus_tag="BSU02120"
     downshifts      214918
                     /Source="Nicolas_upshifts"
                     /id="D80"
                     /incds=0
                     /nref=183
                     /ntot=273
                     /MaxReadThrough="0.8051"
                     /MaxDrop="6.79949"
                     /score="24.7668372"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U146"
                     /TUdmin="-21"
                     /isTUend="TRUE"
     CDS             complement(214982..215863)
                     /gene="glpQA"
                     /locus_tag="BSU_02130"
                     /old_locus_tag="BSU02130"
                     /EC_number="3.1.4.46"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10913081, 21966272"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10913081, 21966272;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted glycerophosphoryl diester
                     phosphodiesterase"
                     /protein_id="NP_388095.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02130"
                     /db_xref="EnsemblGenomes-Tr:CAB12007"
                     /db_xref="GOA:P37965"
                     /db_xref="InterPro:IPR004129"
                     /db_xref="InterPro:IPR017946"
                     /db_xref="InterPro:IPR030395"
                     /db_xref="PDB:5T91"
                     /db_xref="PDB:5T9B"
                     /db_xref="PDB:5T9C"
                     /db_xref="SubtiList:BG10646"
                     /db_xref="UniProtKB/Swiss-Prot:P37965"
                     /translation="MRKNRILALFVLSLGLLSFMVTPVSAASKGNLLSPDRILTVAHR
                     GASGYVPEHTILSYETAQKMKADFIELDLQMTKDGKLIVMHDEKLDRTTNGMGWVKDH
                     TLADIKKLDAGSWFNEAYPEKAKPQYVGLKVPTLEEVLDRFGKHANYYIETKSPDTYP
                     GMEEKLIASLQKHKLLGKHSKPGQVIIQSFSKESLVKVHQLQPNLPTVQLLEAKQMAS
                     MTDAALEEIKTYAVGAGPDYKALNQENVRMIRSHGLLLHPYTVNNEADMHRLLDWGVT
                     GVFTNYPDLFHKVKKGY*"
     gene            complement(214982..215863)
                     /gene="glpQA"
                     /locus_tag="BSU_02130"
                     /old_locus_tag="BSU02130"
     downshifts      complement(214993)
                     /Source="Nicolas_upshifts"
                     /id="D81"
                     /incds=0
                     /nref=61
                     /ntot=107
                     /MaxReadThrough="2.31368"
                     /MaxDrop="7.76277"
                     /score="9.56390732"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U147"
                     /TUdmin=0
                     /isTUend="TRUE"
     upshifts        complement(215906)
                     /Source="Nicolas_upshifts"
                     /id="U147"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.0999000999001"
                     /xcortree=4
                     /SigmaFactorBS="tttaagaaagacacataaaaGATTAATagttttccAACACGC
                     CGTTTACATCcgttttttattatgaaagacaggtagtgcttatctataaggaggagaa
                     a"
                     /listShort="glpQ"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(215915..215931)
                     /Source="Nicolas_upshift_promotors"
                     /id="U147"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.0999000999001"
                     /xcortree=4
                     /SigmaFactorBS="tttaagaaagacacataaaaGATTAATagttttccAACACGC
                     CGTTTACATCcgttttttattatgaaagacaggtagtgcttatctataaggaggagaa
                     a"
                     /listShort="glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(215940..215946)
                     /Source="Nicolas_upshift_promotors"
                     /id="U147"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.0999000999001"
                     /xcortree=4
                     /SigmaFactorBS="tttaagaaagacacataaaaGATTAATagttttccAACACGC
                     CGTTTACATCcgttttttattatgaaagacaggtagtgcttatctataaggaggagaa
                     a"
                     /listShort="glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(215962..217296)
                     /gene="glpT"
                     /locus_tag="BSU_02140"
                     /old_locus_tag="BSU02140"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8012593, 11929549, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8012593, 11929549,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate permease"
                     /protein_id="NP_388096.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02140"
                     /db_xref="EnsemblGenomes-Tr:CAB12008"
                     /db_xref="GOA:P37948"
                     /db_xref="InterPro:IPR000849"
                     /db_xref="InterPro:IPR005267"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR021159"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG10645"
                     /db_xref="UniProtKB/Swiss-Prot:P37948"
                     /translation="MLNIFKPAPHIERLDDSKMDAAYKRLRLQVFIGIFIGYAGYYLL
                     RKNFAFAIPYLQEQGFSKTELGLVLAAVSIAYGFSKFIMGMVSDRCNPRYFLATGLFL
                     SAIVNILFVSMPWVTSSVTIMFIFMFINGWFQGMGWPPCGRTMAHWFSISERGTKMSI
                     WNVAHNIGGGILAPLVTLGIAMFVTWKSVFFFPAIIAIIISFLIVLLVRDTPQSCGLP
                     PIEEYRNDYPKHAFKNQEKELTTKEILFQYVLNNKFLWYIAFANVFVYFVRYGVVDWA
                     PTYLTEAKGFSPEDSRWSYFLYEYAGIPGTILCGWISDRFFKSRRAPAGVLFMAGVFI
                     AVLVYWLNPAGNPLVDNIALISIGFLIYGPVMLIGLQAIDLAPKKAAGTAAGLTGFFG
                     YIGGSAFANAIMGFVVDRFNWNGGFIMLISSCILAIVFLALTWNTGKRAEHV*"
     gene            complement(215962..217296)
                     /gene="glpT"
                     /locus_tag="BSU_02140"
                     /old_locus_tag="BSU02140"
     promotor_-35    216944..216953
                     /Source="Nicolas_upshift_promotors"
                     /id="U148"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1339
                     /SigmaFactorBS="cgttgataaacataaaaataaacatgatggtgacgctcGAAG
                     TCACCCaaggcattgaaaCGAATAGAATATTAACGATTgctgataaaaataggcctgt
                     c"
                     /listShort="S81, ybeF, ybfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       216966..217592
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_234998_235624"
                     /HighExp="S6, S8, S7, S5, BT, B36, G/S, C30, Pyr, B60"
                     /AntisenseName="glpT"
                     /AntisenseCor="-5.0958691169636701E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S81"
     promotor_-10    216966..216985
                     /Source="Nicolas_upshift_promotors"
                     /id="U148"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1339
                     /SigmaFactorBS="cgttgataaacataaaaataaacatgatggtgacgctcGAAG
                     TCACCCaaggcattgaaaCGAATAGAATATTAACGATTgctgataaaaataggcctgt
                     c"
                     /listShort="S81, ybeF, ybfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        216966
                     /Source="Nicolas_upshifts"
                     /id="U148"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1339
                     /SigmaFactorBS="cgttgataaacataaaaataaacatgatggtgacgctcGAAG
                     TCACCCaaggcattgaaaCGAATAGAATATTAACGATTgctgataaaaataggcctgt
                     c"
                     /listShort="S81, ybeF, ybfA"
                     /GFF_Attribute="listLong"
     S_feature       complement(217297..217369)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_235329_235401_c"
                     /HighExp="G150, Oxctl, Paraq, S0, Diami, H2O2, Lbexp,
                     dia5, dia0, T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA"
                     /TUshortPSig="0.042, 0.935"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S82"
     promotor_no_box complement(217329..217429)
                     /Source="Nicolas_upshift_promotors"
                     /id="U149"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.370629370629371"
                     /psig="0.041958041958042"
                     /xcortree=1566
                     /SigmaFactorBS="tagcttggatggagatgaggagagccaggaatccaacccctt
                     ttgacaaggggtgttttctggctctttttgtttttcgggaaaggaggcacgccacaca
                     t"
                     /listShort="S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(217369)
                     /Source="Nicolas_upshifts"
                     /id="U149"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.370629370629371"
                     /psig="0.041958041958042"
                     /xcortree=1566
                     /SigmaFactorBS="tagcttggatggagatgaggagagccaggaatccaacccctt
                     ttgacaaggggtgttttctggctctttttgtttttcgggaaaggaggcacgccacaca
                     t"
                     /listShort="S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
     S_feature       complement(217371..217457)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_235403_235489_c"
                     /HighExp="G150, Oxctl, S0, Diami, Lbexp, dia5, Paraq,
                     dia0, T0.30H, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.935"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S83"
     promotor_-10    complement(217447..217466)
                     /Source="Nicolas_upshift_promotors"
                     /id="U150"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.396603396603397"
                     /psig="0.935064935064935"
                     /xcortree=1567
                     /SigmaFactorBS="tattcacttccctaaggcccaatttgaaaattaccCGTTTAC
                     AttcgctccggacTATGATAATTTAAGAAAGCGctatcatgataagttaatagcttgg
                     a"
                     /listShort="S83, S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(217461)
                     /Source="Nicolas_upshifts"
                     /id="U150"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.396603396603397"
                     /psig="0.935064935064935"
                     /xcortree=1567
                     /SigmaFactorBS="tattcacttccctaaggcccaatttgaaaattaccCGTTTAC
                     AttcgctccggacTATGATAATTTAAGAAAGCGctatcatgataagttaatagcttgg
                     a"
                     /listShort="S83, S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(217479..217486)
                     /Source="Nicolas_upshift_promotors"
                     /id="U150"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.396603396603397"
                     /psig="0.935064935064935"
                     /xcortree=1567
                     /SigmaFactorBS="tattcacttccctaaggcccaatttgaaaattaccCGTTTAC
                     AttcgctccggacTATGATAATTTAAGAAAGCGctatcatgataagttaatagcttgg
                     a"
                     /listShort="S83, S82, glpT, glpQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             217593..217841
                     /gene="ybeF"
                     /locus_tag="BSU_02150"
                     /old_locus_tag="BSU02150"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388097.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02150"
                     /db_xref="EnsemblGenomes-Tr:CAB12009"
                     /db_xref="GOA:O31442"
                     /db_xref="InterPro:IPR020258"
                     /db_xref="SubtiList:BG12731"
                     /db_xref="UniProtKB/Swiss-Prot:O31442"
                     /translation="MDELDIAFFILPLGIMLLSIVGTCICKNPYLMPMLSLVISLVLT
                     FTIFNQSFLGWAVVYSLVSLALSYITLIVVRKRKESGN*"
     gene            217593..217841
                     /gene="ybeF"
                     /locus_tag="BSU_02150"
                     /old_locus_tag="BSU02150"
     promotor_-35    217865..217872
                     /Source="Nicolas_upshift_promotors"
                     /id="U151"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.801198801198801"
                     /psig="0.984015984015984"
                     /xcortree=3080
                     /SigmaFactorBS="gtaaggaaaaggaaggaatcaggaaattaaaaagacctcact
                     ttctaacatatCGTTGACTaaagcaactatatgtGATTATAATTGCTTTAGTCAacga
                     t"
                     /listShort="ybfA, ybfB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        217872
                     /Source="Nicolas_upshifts"
                     /id="U151"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.801198801198801"
                     /psig="0.984015984015984"
                     /xcortree=3080
                     /SigmaFactorBS="gtaaggaaaaggaaggaatcaggaaattaaaaagacctcact
                     ttctaacatatCGTTGACTaaagcaactatatgtGATTATAATTGCTTTAGTCAacga
                     t"
                     /listShort="ybfA, ybfB"
                     /GFF_Attribute="listLong"
     promotor_-10    217888..217907
                     /Source="Nicolas_upshift_promotors"
                     /id="U151"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.801198801198801"
                     /psig="0.984015984015984"
                     /xcortree=3080
                     /SigmaFactorBS="gtaaggaaaaggaaggaatcaggaaattaaaaagacctcact
                     ttctaacatatCGTTGACTaaagcaactatatgtGATTATAATTGCTTTAGTCAacga
                     t"
                     /listShort="ybfA, ybfB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             217933..218850
                     /gene="ybfA"
                     /locus_tag="BSU_02160"
                     /old_locus_tag="BSU02160"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator with
                     acetyltransferase domain"
                     /protein_id="NP_388098.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02160"
                     /db_xref="EnsemblGenomes-Tr:CAB12010"
                     /db_xref="GOA:O31443"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12732"
                     /db_xref="UniProtKB/Swiss-Prot:O31443"
                     /translation="MKTRESSVGLKFRKFNRFYTNVLGFLNEHIYDSPFSLTETRILF
                     EIYNTPNCTAKALQDKLGLDRGYVSRIVKQFEKEDLIYKQRSKDDARHHYIFVTETGK
                     TIYKKLEEKANEQVELMLKVINQKEQHKLAEAMAEIEAILSQSLSARASEISIRDYFL
                     SEDLQLLIEKQRQFYAEAHGWDDTFLAYLQETFDADIEKIWIAESGGKFAGSVGLVKH
                     DEKTVQLRWFLVDADFRGRGLGTQLLEHLVAYCQDMKFDRIFLWTVSTMAEARPLYKK
                     FGFRISEVKQEAPLWGQQLTEERWDLELS*"
     gene            217933..218850
                     /gene="ybfA"
                     /locus_tag="BSU_02160"
                     /old_locus_tag="BSU02160"
     CDS             218847..220097
                     /gene="ybfB"
                     /locus_tag="BSU_02170"
                     /old_locus_tag="BSU02170"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative carboxylate transporter"
                     /protein_id="NP_388099.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02170"
                     /db_xref="EnsemblGenomes-Tr:CAB12011"
                     /db_xref="GOA:O31444"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12733"
                     /db_xref="UniProtKB/Swiss-Prot:O31444"
                     /translation="MKRLHYAWIIVSVTFLILLAVQGVRLSFGAFVEPWERQFSIDRS
                     TISLISTVSFIVYGISQPVIGRLVDKWGARAVLAWSALLTGVSIFLTYLVTSPWQLFL
                     LYGLGVSLGVGGASNVAASVLVVNWFSKKRGLAFGIMEAGFGAGQMLLVPGSLMLIHW
                     FSWKLTVVVLGLLLIVIVFPAALLMLRNNPSEKNTEPIGGLAASEKETAPKTTALSVA
                     GMFRMRQFWFLIFPFLICGFTTVGLMDTHLIPFSHDHGFSTTVTSAAVSLLAGFNIAG
                     ILLSGIVADRWSSRKILCILYAVRALSIVILIYSHEPYLLLAFAILFGLVDFATVAPT
                     QMLATQYFQNYSIGLMIGWLSLAHQIGSALGAYVPGVIYTVTGEYTLAFYLSIGMLVL
                     ASVMNVMLREPAAVTRDSAAVVDK*"
     gene            218847..220097
                     /gene="ybfB"
                     /locus_tag="BSU_02170"
                     /old_locus_tag="BSU02170"
     downshifts      220087
                     /Source="Nicolas_upshifts"
                     /id="D82"
                     /incds=0
                     /nref=57
                     /ntot=187
                     /MaxReadThrough="1.17226"
                     /MaxDrop="5.55429"
                     /score="12.1347284"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U151"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(220132..220416)
                     /gene="ybfEc"
                     /locus_tag="BSU_02180"
                     /old_locus_tag="BSU02180"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function
                     (C-terminal end)"
                     /db_xref="EnsemblGenomes-Gn:BSU02180"
                     /db_xref="EnsemblGenomes-Tr:CAB12012"
                     /db_xref="GOA:O31445"
                     /db_xref="PSEUDO:CAB12012.2"
                     /db_xref="SubtiList:BG12734"
                     /db_xref="UniProtKB/Swiss-Prot:O31445"
                     /translation="MNHCLHSNTLAKIVCTVTLITLYFYFFSTRFNELIELAVQMFFA
                     LIGLFWVFIVSPFSRKVQISERFKQKSENARIVGMIDFVLEQKYKKSISE*"
     gene            complement(220132..220416)
                     /gene="ybfEc"
                     /locus_tag="BSU_02180"
                     /old_locus_tag="BSU02180"
                     /pseudo
     downshifts      complement(220185)
                     /Source="Nicolas_upshifts"
                     /id="D83"
                     /incds=0
                     /nref=4
                     /ntot=189
                     /MaxReadThrough="2.49989"
                     /MaxDrop="3.7302"
                     /score="13.7144473"
                     /energy="-12.6"
                     /TU="U153"
                     /idTUdmin="U153"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     CDS             complement(220322..220444)
                     /gene="ybfEn"
                     /locus_tag="BSU_02181"
                     /old_locus_tag="BSU02181"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function YbfE
                     (N-terminal fragment)"
                     /db_xref="PSEUDO:SOX90538.1"
                     /translation="MLNQLKVFFSEPLLTFKHTCQNRMYCDINNVILLFFQHSF*"
     gene            complement(220322..220444)
                     /gene="ybfEn"
                     /locus_tag="BSU_02181"
                     /old_locus_tag="BSU02181"
                     /pseudo
     S_feature       complement(220417..220537)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_238449_238569_c"
                     /HighExp="Lbexp, dia0, LBGexp, G150, Mt0, H2O2, dia5,
                     M0t45, G135, HPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, Sig-"
                     /TUshortPSig="0.899, 0"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S84"
     promotor_-10    complement(220522..220540)
                     /Source="Nicolas_upshift_promotors"
                     /id="U152"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.899100899100899"
                     /psig="0.899100899100899"
                     /xcortree=1463
                     /SigmaFactorBS="tactaagaaatactcaatttttatactttaagagaTGTATAt
                     attgaatgtagaccaCCATACATATAAAGAAACAgaaacagcaactttattttagaac
                     a"
                     /listShort="S84, ybfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(220537)
                     /Source="Nicolas_upshifts"
                     /id="U152"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.899100899100899"
                     /psig="0.899100899100899"
                     /xcortree=1463
                     /SigmaFactorBS="tactaagaaatactcaatttttatactttaagagaTGTATAt
                     attgaatgtagaccaCCATACATATAAAGAAACAgaaacagcaactttattttagaac
                     a"
                     /listShort="S84, ybfE"
                     /GFF_Attribute="listLong"
     S_feature       complement(220539..220611)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_238571_238643_c"
                     /HighExp="Lbexp, dia0, LBGexp, HPh, G150, H2O2, dia5, Mt0,
                     M0t45, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig=0
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S85"
     promotor_-35    complement(220557..220562)
                     /Source="Nicolas_upshift_promotors"
                     /id="U152"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.899100899100899"
                     /psig="0.899100899100899"
                     /xcortree=1463
                     /SigmaFactorBS="tactaagaaatactcaatttttatactttaagagaTGTATAt
                     attgaatgtagaccaCCATACATATAAAGAAACAgaaacagcaactttattttagaac
                     a"
                     /listShort="S84, ybfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(220612..221523)
                     /gene="ybfF"
                     /locus_tag="BSU_02190"
                     /old_locus_tag="BSU02190"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388101.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02190"
                     /db_xref="EnsemblGenomes-Tr:CAB12013"
                     /db_xref="GOA:O31446"
                     /db_xref="SubtiList:BG12735"
                     /db_xref="UniProtKB/Swiss-Prot:O31446"
                     /translation="MKNDQIVFEKTKNIAHDINQMQNQQEIIDYLFRQDSLTLNQLKH
                     YYSEPSLPLQFLVKVAVLCMFISMTLASFLFIQAKEVFTNTILSDISPAVFSIFTVIC
                     IFMTYTKIIKKGNKNKGKASLNQRSEFYEKNKLINTILYKKYKMDQQNIQANKHTASD
                     NEDSMNFSAVLNHVLTISKNDKELLGYLDTRDNAMLSQLKAYFSTRPFSLPHYMSLMF
                     CGSIIVVYATSLFSGQINYIDIPHIFIFLLLIIFLKILIDLIKLLNISRKGQLHTVLH
                     FAQRAEYLRMRGVIDFILTERYNKKIM*"
     gene            complement(220612..221523)
                     /gene="ybfF"
                     /locus_tag="BSU_02190"
                     /old_locus_tag="BSU02190"
     S_feature       complement(221524..221611)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_239556_239643_c"
                     /HighExp="LBGexp, Lbexp, G150, dia5, dia0, G135, Oxctl,
                     H2O2, Mt0, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig=0
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S86"
     CDS             complement(221612..223810)
                     /gene="ybfG"
                     /locus_tag="BSU_02200"
                     /old_locus_tag="BSU02200"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative pepdidoglycan binding protein"
                     /protein_id="NP_388102.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02200"
                     /db_xref="EnsemblGenomes-Tr:CAB12014"
                     /db_xref="GOA:O31447"
                     /db_xref="InterPro:IPR002477"
                     /db_xref="InterPro:IPR015020"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR036365"
                     /db_xref="InterPro:IPR036366"
                     /db_xref="SubtiList:BG12736"
                     /db_xref="UniProtKB/Swiss-Prot:O31447"
                     /translation="MVDEMVLITQQWLNDTYSGKHGYNPVEESGKTGWDTIYGLTRAL
                     QIELGISEPADNFGPTTQRLFKPLKRQAPDSKPSNMNFILQGALWCKGFNPGGFTGVF
                     YEKTENAVKEFQKAAGLTTQDGIVTTLIMKALLDMSAFKLVSGGDSRIRQIQQNLNRD
                     YNDYIGLMPCDGLYGRDTNKALIYALQKEEGMSTSVANGFFGNGTTSLCPTLTPGDSR
                     TGFVLIVQYALYCNGKSFDPGEFDGKYGVGVVSAVKAFQEFMCLPQTGYADMPTIKAL
                     LSSSGDTTRTASACDTATIITAEKAQTLRNNGYKTVGRYLTGNVRTSSGLTSKALTSK
                     ELAVILDAGLKVFPIYQDGGYESSYFVKDQGTRDAYSAASAARRLGFPSGTTIYFAVD
                     FDAYDYEVTDKIIPYFQEIKSAFTKMQTFSTAPKYEIGVYGPRNICIRTSEAGLTKYS
                     FVANMSTGFSGNLGYPMPNNWAFDQFYEGTIGSGSGSIGIDKDGYSGRDSGASNVNPP
                     SDPVYDARLRTLTDILSTIPALENLTSLANAMFEFDTTETIFTSPELDIILSTSLLAT
                     IPSEGSPNTITITNGKPGAYITGLLGDTQTSLTASQIDSYQNLLNSLSLSVRNGYLEV
                     YVNPTAESLNIQIKIYTPDIPVGDNVTTGLTTTITFKIKTYKGVPVTSPESELALDWP
                     SYDQYLFPVVGVAALLLIGNMGSDLTNNKGVKVATALSAMLLAIFAYYTS*"
     gene            complement(221612..223810)
                     /gene="ybfG"
                     /locus_tag="BSU_02200"
                     /old_locus_tag="BSU02200"
     misc_feature    complement(223845..223863)
                     /Source="Nicolas_upshift_promotors"
                     /id="U153"
                     /multdbtbs="-"
                     /comp="M12"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=1523
                     /SigmaFactorBS="ctgttggagaacggatgtaaaatggatgcttaacggcatcca
                     tttttttattttGTCCTACGTTTGCCACCTAtaaatgaacgcaatctaacaaaggagg
                     a"
                     /listShort="ybfG, S86, ybfF, S85, S84, ybfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(223857)
                     /Source="Nicolas_upshifts"
                     /id="U153"
                     /multdbtbs="-"
                     /comp="M12"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=1523
                     /SigmaFactorBS="ctgttggagaacggatgtaaaatggatgcttaacggcatcca
                     tttttttattttGTCCTACGTTTGCCACCTAtaaatgaacgcaatctaacaaaggagg
                     a"
                     /listShort="ybfG, S86, ybfF, S85, S84, ybfE"
                     /GFF_Attribute="listLong"
     CDS             complement(223885..224805)
                     /gene="ybfH"
                     /locus_tag="BSU_02210"
                     /old_locus_tag="BSU02210"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388103.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02210"
                     /db_xref="EnsemblGenomes-Tr:CAB12015"
                     /db_xref="GOA:O31448"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12737"
                     /db_xref="UniProtKB/Swiss-Prot:O31448"
                     /translation="MNIQRETSGHIAAIVTILIWGTTFISTKVLLADFSPMEILFYRF
                     LMGFIALILVRPNMIPFRNWRQELLFAGAGLFGVTLYFLLENIALTYTYASNVGMIVS
                     IIPMITAVLAHFLLEGEKLRLTFLIGFISALIGLLLITFNGNVVLRLNPLGDIMAAGA
                     ALVFGGYSIFMKKLSAYEYHIIELTQRVFLYGLLFMVPALFLFDFHFDLSRFSSASNI
                     LNMLFLGIGASALCFATWNYSVGVLGAVKSSAYIYMVPVITIAASVLILHENMTWIAL
                     LGGALTLLGLYISELKPKAKLLENGCKMDA*"
     gene            complement(223885..224805)
                     /gene="ybfH"
                     /locus_tag="BSU_02210"
                     /old_locus_tag="BSU02210"
     CDS             complement(224802..225629)
                     /gene="ybfI"
                     /locus_tag="BSU_02220"
                     /old_locus_tag="BSU02220"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family, cupin family)"
                     /protein_id="NP_388104.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02220"
                     /db_xref="EnsemblGenomes-Tr:CAB12016"
                     /db_xref="GOA:O31449"
                     /db_xref="InterPro:IPR003313"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="SubtiList:BG12738"
                     /db_xref="UniProtKB/Swiss-Prot:O31449"
                     /translation="MQNETRTLQLDPHLHIEAYRFKGIMQKFPNHFHDYYVIGFIEKG
                     QRYLACQDQEYIINPGDLLLFNPRDTHSCEQIDGRTLDYRCINVMPDIMEKAVKEITG
                     SGHLPYFSQHVLFRHELTASLQELHILISEEKQALRKEELFLHLLEELIRHYSDVTFL
                     SSVPEPSDEVKMVCEFLEEHYAENVTLNDLSELTGWSKYHLLRSFTKQKGITPNSYME
                     TIRINQAKKLLEQGVRPIDAAFQTGFSDQSHMTKFFKRQVGLTPKQYMKIFEKELHR*
                     "
     gene            complement(224802..225629)
                     /gene="ybfI"
                     /locus_tag="BSU_02220"
                     /old_locus_tag="BSU02220"
     misc_feature    complement(225656..225675)
                     /Source="Nicolas_upshift_promotors"
                     /id="U154"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.999000999001"
                     /xcortree=583
                     /SigmaFactorBS="ctttctctattcctaaacagcaacatcatacaagaaatcccc
                     caaaatCATGCTACACTTAATCCAAGaccaccacaccgacaggaggcatcccatgcaa
                     a"
                     /listShort="ybfI"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(225663)
                     /Source="Nicolas_upshifts"
                     /id="U154"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.999000999001"
                     /xcortree=583
                     /SigmaFactorBS="ctttctctattcctaaacagcaacatcatacaagaaatcccc
                     caaaatCATGCTACACTTAATCCAAGaccaccacaccgacaggaggcatcccatgcaa
                     a"
                     /listShort="ybfI"
                     /GFF_Attribute="listLong"
     promotor_-35    225803..225806
                     /Source="Nicolas_upshift_promotors"
                     /id="U155"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig="0.999000999001"
                     /xcortree=2313
                     /SigmaFactorBS="tttaaccctcaataataattttatcttttttaataaaAATTt
                     atttttcaaatatTTCAGTTATAATGGTTTGGAacagataggaggggcaaagatgtat
                     c"
                     /listShort="purT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    225821..225840
                     /Source="Nicolas_upshift_promotors"
                     /id="U155"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig="0.999000999001"
                     /xcortree=2313
                     /SigmaFactorBS="tttaaccctcaataataattttatcttttttaataaaAATTt
                     atttttcaaatatTTCAGTTATAATGGTTTGGAacagataggaggggcaaagatgtat
                     c"
                     /listShort="purT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        225826
                     /Source="Nicolas_upshifts"
                     /id="U155"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig="0.999000999001"
                     /xcortree=2313
                     /SigmaFactorBS="tttaaccctcaataataattttatcttttttaataaaAATTt
                     atttttcaaatatTTCAGTTATAATGGTTTGGAacagataggaggggcaaagatgtat
                     c"
                     /listShort="purT"
                     /GFF_Attribute="listLong"
     CDS             225860..227014
                     /gene="purT"
                     /locus_tag="BSU_02230"
                     /old_locus_tag="BSU02230"
                     /EC_number="2.1.2.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7496533"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7496533; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase 2"
                     /protein_id="NP_388105.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02230"
                     /db_xref="EnsemblGenomes-Tr:CAB12017"
                     /db_xref="GOA:P39771"
                     /db_xref="InterPro:IPR003135"
                     /db_xref="InterPro:IPR005862"
                     /db_xref="InterPro:IPR011054"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="SubtiList:BG10924"
                     /db_xref="UniProtKB/Swiss-Prot:P39771"
                     /translation="MYQSKKVLLLGSGELGKEVVIEAQRLGVQTVAVDSYEHAPAMQV
                     AHNSYVVDMLDPEQIRTIIEKENPDLIVPEVEAIATDELLKLEEEGFHVIPNARAAKL
                     TMDREGIRRLAAETLGLATAGYEFANTYDEFIQAAAQIGFPCVVKPLMSSSGKGQSVC
                     RSEADLESCWETAMEGGRVKNGRVIVEEFIPFESEITLLTVRAVNGTAFCEPIGHVQK
                     DGDYIESWQPHDMTEQQIEEAKHIAKTITDELGGYGLFGVELFLAKDRVYFSEVSPRP
                     HDTGLVTLVTQNLSEFALHVRAILGFPITEITQLSPGASRPLKAPEELADYTVEGLEN
                     ALAVPKTQVRVFGKPITKAGRRMAVALSAADSVETARENAKKALDQLILK*"
     gene            225860..227014
                     /gene="purT"
                     /locus_tag="BSU_02230"
                     /old_locus_tag="BSU02230"
     downshifts      226995
                     /Source="Nicolas_upshifts"
                     /id="D84"
                     /incds=0
                     /nref=100
                     /ntot=189
                     /MaxReadThrough="2.6996"
                     /MaxDrop="5.22319"
                     /score="39.2561117"
                     /energy="-15.1"
                     /TU="NA"
                     /idTUdmin="U155"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    227075..227080
                     /Source="Nicolas_upshift_promotors"
                     /id="U156"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1104
                     /SigmaFactorBS="ttgtcatgggacaaggcctgtttttttctttctccgtaaaag
                     ttttATCATAagaatcagaaacctGATTATAATGTAAAAGTCTtccatcgatacgggt
                     g"
                     /listShort="mpr, ybfJ"
                     /listLong="S87, ybfK, S88, pssA, ybfM, psd"
                     /label="promotor_-35"
     upshifts        227089
                     /Source="Nicolas_upshifts"
                     /id="U156"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1104
                     /SigmaFactorBS="ttgtcatgggacaaggcctgtttttttctttctccgtaaaag
                     ttttATCATAagaatcagaaacctGATTATAATGTAAAAGTCTtccatcgatacgggt
                     g"
                     /listShort="mpr, ybfJ"
                     /listLong="S87, ybfK, S88, pssA, ybfM, psd"
     promotor_-10    227095..227113
                     /Source="Nicolas_upshift_promotors"
                     /id="U156"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1104
                     /SigmaFactorBS="ttgtcatgggacaaggcctgtttttttctttctccgtaaaag
                     ttttATCATAagaatcagaaacctGATTATAATGTAAAAGTCTtccatcgatacgggt
                     g"
                     /listShort="mpr, ybfJ"
                     /listLong="S87, ybfK, S88, pssA, ybfM, psd"
                     /label="promotor_-10"
     promotor_-35    227129..227136
                     /Source="Nicolas_upshift_promotors"
                     /id="U157"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig=1
                     /xcortree=760
                     /SigmaFactorBS="acctgattataatgtaaaagtcttccatcgatacgggtGGTT
                     GACActaaaggagggagaTGACAAAATGAAATTAGTTCcaagattcagaaaacaatgg
                     t"
                     /listShort="mpr, ybfJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    227151..227170
                     /Source="Nicolas_upshift_promotors"
                     /id="U157"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig=1
                     /xcortree=760
                     /SigmaFactorBS="acctgattataatgtaaaagtcttccatcgatacgggtGGTT
                     GACActaaaggagggagaTGACAAAATGAAATTAGTTCcaagattcagaaaacaatgg
                     t"
                     /listShort="mpr, ybfJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        227151
                     /Source="Nicolas_upshifts"
                     /id="U157"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig=1
                     /xcortree=760
                     /SigmaFactorBS="acctgattataatgtaaaagtcttccatcgatacgggtGGTT
                     GACActaaaggagggagaTGACAAAATGAAATTAGTTCcaagattcagaaaacaatgg
                     t"
                     /listShort="mpr, ybfJ"
                     /GFF_Attribute="listLong"
     CDS             227158..228099
                     /gene="mpr"
                     /locus_tag="BSU_02240"
                     /old_locus_tag="BSU02240"
                     /EC_number="3.4.21.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 15205417, 15375126,
                     21819557, 25666135; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular glutamyl-endopeptidase"
                     /protein_id="NP_388106.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02240"
                     /db_xref="EnsemblGenomes-Tr:CAB12018"
                     /db_xref="GOA:P39790"
                     /db_xref="InterPro:IPR000126"
                     /db_xref="InterPro:IPR001254"
                     /db_xref="InterPro:IPR008256"
                     /db_xref="InterPro:IPR009003"
                     /db_xref="InterPro:IPR018114"
                     /db_xref="InterPro:IPR028301"
                     /db_xref="SubtiList:BG10690"
                     /db_xref="UniProtKB/Swiss-Prot:P39790"
                     /translation="MKLVPRFRKQWFAYLTVLCLALAAAVSFGVPAKAAENPQTSVSN
                     TGKEADATKNQTSKADQVSAPYEGTGKTSKSLYGGQTELEKNIQTLQPSSIIGTDERT
                     RISSTTSFPYRATVQLSIKYPNTSSTYGCTGFLVNPNTVVTAGHCVYSQDHGWASTIT
                     AAPGRNGSSYPYGTYSGTMFYSVKGWTESKDTNYDYGAIKLNGSPGNTVGWYGYRTTN
                     SSSPVGLSSSVTGFPCDKTFGTMWSDTKPIRSAETYKLTYTTDTYGCQSGSPVYRNYS
                     DTGQTAIAIHTNGGSSYNLGTRVTNDVFNNIQYWANQ*"
     gene            227158..228099
                     /gene="mpr"
                     /locus_tag="BSU_02240"
                     /old_locus_tag="BSU02240"
     CDS             228062..228460
                     /gene="ybfJ"
                     /locus_tag="BSU_02250"
                     /old_locus_tag="BSU02250"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388107.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02250"
                     /db_xref="EnsemblGenomes-Tr:CAB12019"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR019730"
                     /db_xref="SubtiList:BG12739"
                     /db_xref="UniProtKB/Swiss-Prot:O31451"
                     /translation="MYSTIFNIGQINKYSKLAIFMSILFLCGCSSQTHSSQKETTIPV
                     TLHVEDAKGLPVEGVQVTIVKAPSSDEEPSTEIGEILGKTDKNGDIKWDTGRKGDYSV
                     ALTKGETSVTHHISLTEDKKDHAIPLVFKE*"
     gene            228062..228460
                     /gene="ybfJ"
                     /locus_tag="BSU_02250"
                     /old_locus_tag="BSU02250"
     promotor_-10    complement(228154..228168)
                     /Source="Nicolas_upshift_promotors"
                     /id="U158"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="Sig-"
                     /pcomp="0.418581418581419"
                     /psig="0.418581418581419"
                     /xcortree=776
                     /SigmaFactorBS="gcagccccttagcatcctccacatgaagagtgacaGGAATAg
                     tcgtttctttttgaGAAGAATGCGTCTGCgaactgcacccgcataaaaacaaaataga
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(228164)
                     /Source="Nicolas_upshifts"
                     /id="U158"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="Sig-"
                     /pcomp="0.418581418581419"
                     /psig="0.418581418581419"
                     /xcortree=776
                     /SigmaFactorBS="gcagccccttagcatcctccacatgaagagtgacaGGAATAg
                     tcgtttctttttgaGAAGAATGCGTCTGCgaactgcacccgcataaaaacaaaataga
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(228184..228189)
                     /Source="Nicolas_upshift_promotors"
                     /id="U158"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="Sig-"
                     /pcomp="0.418581418581419"
                     /psig="0.418581418581419"
                     /xcortree=776
                     /SigmaFactorBS="gcagccccttagcatcctccacatgaagagtgacaGGAATAg
                     tcgtttctttttgaGAAGAATGCGTCTGCgaactgcacccgcataaaaacaaaataga
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      228447
                     /Source="Nicolas_upshifts"
                     /id="D85"
                     /incds=0
                     /nref=19
                     /ntot=51
                     /MaxReadThrough="3.50775"
                     /MaxDrop="5.06025"
                     /score="29.4582027"
                     /energy="-15.4"
                     /TU="U156"
                     /idTUdmin="U157"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    228516..228523
                     /Source="Nicolas_upshift_promotors"
                     /id="U159"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.833166833166833"
                     /psig=1
                     /xcortree=2185
                     /SigmaFactorBS="ttttatttattgcaggaaaccaaacTATATACTggaaattta
                     ttatgTGAGATAATAAGAAATAGGTattttttcttacgagacaaaaggggcgttatcc
                     t"
                     /listShort="S87, ybfK, S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    228538..228557
                     /Source="Nicolas_upshift_promotors"
                     /id="U159"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.833166833166833"
                     /psig=1
                     /xcortree=2185
                     /SigmaFactorBS="ttttatttattgcaggaaaccaaacTATATACTggaaattta
                     ttatgTGAGATAATAAGAAATAGGTattttttcttacgagacaaaaggggcgttatcc
                     t"
                     /listShort="S87, ybfK, S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       228551..228625
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_246583_246657"
                     /HighExp="Cold, LoTm, S0, aero, ferm, T-4.40H, nit,
                     T-5.40H, T-0.40H, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigEF"
                     /TUlongPSig="0.973"
                     /label="S87"
     upshifts        228551
                     /Source="Nicolas_upshifts"
                     /id="U159"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.833166833166833"
                     /psig=1
                     /xcortree=2185
                     /SigmaFactorBS="ttttatttattgcaggaaaccaaacTATATACTggaaattta
                     ttatgTGAGATAATAAGAAATAGGTattttttcttacgagacaaaaggggcgttatcc
                     t"
                     /listShort="S87, ybfK, S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
     CDS             228626..229516
                     /gene="cesB"
                     /locus_tag="BSU_02260"
                     /old_locus_tag="BSU02260"
                     /EC_number="3.1.1.1"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11389736, 24418394"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11389736, 24418394;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="enantioselective carboxylesterase"
                     /protein_id="NP_388108.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02260"
                     /db_xref="EnsemblGenomes-Tr:CAB12020"
                     /db_xref="GOA:O31452"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:4CCY"
                     /db_xref="SubtiList:BG12740"
                     /db_xref="UniProtKB/Swiss-Prot:O31452"
                     /translation="MIQDSMQFAAVESGLRFYQAYDQSLSLWPIESEAFYVSTRFGKT
                     HIIASGPKDAPSLILLHGGLFSSAMWYPNIAAWSSQFRTYAVDIIGDKNKSIPSAAME
                     TRADFAEWMKDVFDSLGLETAHLAGLSLGGSHIVNFLLRAPERVERAVVISPAEAFIS
                     FHPDVYKYAAELTGARGAESYIKWITGDSYDLHPLLQRQIVAGVEWQDEQRSLKPTEN
                     GFPYVFTDQELKSIQVPVLLMFGEHEAMYHQQMAFERASVLVPGIQAEIVKNAGHLLS
                     LEQPEYVNQRVLSFLCGGIK*"
     gene            228626..229516
                     /gene="cesB"
                     /locus_tag="BSU_02260"
                     /old_locus_tag="BSU02260"
     promotor_-35    228860..228867
                     /Source="Nicolas_upshift_promotors"
                     /id="U160"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.867132867132867"
                     /psig="0.867132867132867"
                     /xcortree=2736
                     /SigmaFactorBS="ttttcagctctgcgatgtggtatccgaatatcgcagcgtgga
                     gcAGTCAATTtcgtacatatgcgGTCGATATAATAGGAGACAaaaataaaagtatacc
                     a"
                     /listShort="S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        228876
                     /Source="Nicolas_upshifts"
                     /id="U160"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.867132867132867"
                     /psig="0.867132867132867"
                     /xcortree=2736
                     /SigmaFactorBS="ttttcagctctgcgatgtggtatccgaatatcgcagcgtgga
                     gcAGTCAATTtcgtacatatgcgGTCGATATAATAGGAGACAaaaataaaagtatacc
                     a"
                     /listShort="S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
     promotor_-10    228881..228899
                     /Source="Nicolas_upshift_promotors"
                     /id="U160"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.867132867132867"
                     /psig="0.867132867132867"
                     /xcortree=2736
                     /SigmaFactorBS="ttttcagctctgcgatgtggtatccgaatatcgcagcgtgga
                     gcAGTCAATTtcgtacatatgcgGTCGATATAATAGGAGACAaaaataaaagtatacc
                     a"
                     /listShort="S88, pssA, ybfM, psd"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       229517..229711
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_247549_247743"
                     /HighExp="Cold, LBGstat, Paraq, Oxctl, H2O2, dia15, G135,
                     Diami, Lbexp, LBGexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD, SigA"
                     /TUshortPSig="0.867, 1"
                     /TUlongSig="SigEF"
                     /TUlongPSig="0.973"
                     /label="S88"
     CDS             229712..230245
                     /gene="pssA"
                     /locus_tag="BSU_02270"
                     /old_locus_tag="BSU02270"
                     /EC_number="2.7.8.8"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14762009, 15743965, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14762009,
                     15743965, 15849754, 16850406; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine synthase"
                     /protein_id="NP_388109.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02270"
                     /db_xref="EnsemblGenomes-Tr:CAB12021"
                     /db_xref="GOA:P39823"
                     /db_xref="InterPro:IPR000462"
                     /db_xref="InterPro:IPR004533"
                     /db_xref="SubtiList:BG11012"
                     /db_xref="UniProtKB/Swiss-Prot:P39823"
                     /translation="MNYIPCMITIGNFICGLLAIHSLLYHNIHSAVLFIFTGMFLDFF
                     DGMAARKLNAVSDMGRELDSFADLVTFGVAPSMLAYSVALYTLPFIGILCALTYSICG
                     MLRLSKFNIEQSKLPTFIGMPIPFAGMCLVILSFTYNPILLAIGTCGLSYLMVSKIKF
                     PHFKKHAAENLESGRWN*"
     gene            229712..230245
                     /gene="pssA"
                     /locus_tag="BSU_02270"
                     /old_locus_tag="BSU02270"
     CDS             230236..230724
                     /gene="ybfM"
                     /locus_tag="BSU_02280"
                     /old_locus_tag="BSU02280"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12682299, 14762009,
                     15849754, 16850406; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane phosphatase"
                     /protein_id="NP_388110.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02280"
                     /db_xref="EnsemblGenomes-Tr:CAB12022"
                     /db_xref="GOA:O31453"
                     /db_xref="InterPro:IPR032816"
                     /db_xref="SubtiList:BG12741"
                     /db_xref="UniProtKB/Swiss-Prot:O31453"
                     /translation="MELVQQLIADYGYLAIFLMLVLGIVGLPIPDEVMMTVVGYFTHT
                     DVLNYELSILISFVGALLGMLISYMIGRKAGRPFIDKYGKWVGLKEKRMMKVEKWMKK
                     YGPYSLILGYFIPGVRHVTCYFSGIGKMDLKTYVAFAAIGAFLWCFVFITIGRVIGII
                     HV*"
     gene            230236..230724
                     /gene="ybfM"
                     /locus_tag="BSU_02280"
                     /old_locus_tag="BSU02280"
     CDS             230717..231508
                     /gene="psd"
                     /locus_tag="BSU_02290"
                     /old_locus_tag="BSU02290"
                     /EC_number="4.1.1.65"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 14762009, 9422599"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 14762009,
                     9422599; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase; 32 kDa
                     precursor processed into a 29 kDa protein"
                     /protein_id="NP_388111.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02290"
                     /db_xref="EnsemblGenomes-Tr:CAB12023"
                     /db_xref="GOA:P39822"
                     /db_xref="InterPro:IPR003817"
                     /db_xref="InterPro:IPR033177"
                     /db_xref="InterPro:IPR033178"
                     /db_xref="SubtiList:BG11013"
                     /db_xref="UniProtKB/Swiss-Prot:P39822"
                     /translation="MFNTAVKILYRSLIELTNHRLSSYLIKGFCESKISKPVIPLFSK
                     HFRLNWDDVDGTAADYGSLSELFIRQINLERRPVSKEAHAVVSPVDGVVQTVGIINPN
                     QTFTVKGKDYSFAELTGCKSADHQYNGGYFVVLYLSPRHYHRFHSPISCRYQKLAELG
                     NRSYPVNQLGLKYGKDVLSKNYRFVYELNSGSRNVLMIPVGAMNINSIVQTNTRTELE
                     IGEELGYFSFGSTVILVFEKDAFQPSAHLAEGQEVQVGELIGYEE*"
     gene            230717..231508
                     /gene="psd"
                     /locus_tag="BSU_02290"
                     /old_locus_tag="BSU02290"
     downshifts      231483
                     /Source="Nicolas_upshifts"
                     /id="D86"
                     /incds=0
                     /nref=101
                     /ntot=236
                     /MaxReadThrough="3.18138"
                     /MaxDrop="4.25536"
                     /score="-2.98360164"
                     /energy="-8"
                     /TU="U159"
                     /idTUdmin="U160"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             231563..231841
                     /gene="ybfN"
                     /locus_tag="BSU_02300"
                     /old_locus_tag="BSU02300"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388112.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02300"
                     /db_xref="EnsemblGenomes-Tr:CAB12024"
                     /db_xref="SubtiList:BG12742"
                     /db_xref="UniProtKB/Swiss-Prot:O31454"
                     /translation="MEKQIISWITDYQNTGDEAVLRQVREVCWPIVEAVLQEKVMDDE
                     QANNLREKGIERFPFIISKYQADVQLPVETFLQNTYRFYFHQVMRESS*"
     gene            231563..231841
                     /gene="ybfN"
                     /locus_tag="BSU_02300"
                     /old_locus_tag="BSU02300"
     promotor_-35    231884..231893
                     /Source="Nicolas_upshift_promotors"
                     /id="U161"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1688
                     /SigmaFactorBS="agcttctttcaacagagaagcttttttttgttggcaggaaaa
                     GGAAACTTTTtctatatctatcTCGTAATGACTAGAGAacctagcagaaaaggagaga
                     t"
                     /listShort="ybfO, ybfP, S89, ybfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        231902
                     /Source="Nicolas_upshifts"
                     /id="U161"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1688
                     /SigmaFactorBS="agcttctttcaacagagaagcttttttttgttggcaggaaaa
                     GGAAACTTTTtctatatctatcTCGTAATGACTAGAGAacctagcagaaaaggagaga
                     t"
                     /listShort="ybfO, ybfP, S89, ybfQ"
                     /GFF_Attribute="listLong"
     promotor_-10    231906..231921
                     /Source="Nicolas_upshift_promotors"
                     /id="U161"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1688
                     /SigmaFactorBS="agcttctttcaacagagaagcttttttttgttggcaggaaaa
                     GGAAACTTTTtctatatctatcTCGTAATGACTAGAGAacctagcagaaaaggagaga
                     t"
                     /listShort="ybfO, ybfP, S89, ybfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             231947..233287
                     /gene="ybfO"
                     /locus_tag="BSU_02310"
                     /old_locus_tag="BSU02310"
                     /EC_number="3.-.-.-"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported hydrolase"
                     /protein_id="NP_388113.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02310"
                     /db_xref="EnsemblGenomes-Tr:CAB12025"
                     /db_xref="GOA:O31455"
                     /db_xref="InterPro:IPR007815"
                     /db_xref="SubtiList:BG12743"
                     /db_xref="UniProtKB/Swiss-Prot:O31455"
                     /translation="MKRMIVRMTLPLLIVCLAFSSFSASARAASEEKYWDHWIERHAQ
                     PLDASNASNKDLRFLKKVLKGKRIVQLGETTHGAGEINATKVRMIKYLHEELGYDVLA
                     FESGFPDTNASYLNMDQLTPKSTMKNSIYAVWHTEDVVELFDYMKEQKEKGDPLILTG
                     FDIQSMKNSFNVAATQWVKAVDPEKAELLSQSENDFSTLVTDSNTFDEFSQKKEKLVK
                     NYQKLIKFTKTHASELKENLPKEPKAYEMFMHSLQLRIDVMETYMLEEMKEKLEEYPE
                     NIEDFSFFMRDRMMAEQFQWVADTLYPKKKIIVWGHNYHLRKQNTKMIKDWVQLNGPN
                     MGDYLPERLKKQTYTIGIYAYSGASLDSSDNKTVKPVTSPPPSGSLEALLKAADRPAV
                     FVDFLHTKNKKGTSWMYTPRTALYWGYMEEQMILKEQYDGVIWLEHITPSVIIK*"
     gene            231947..233287
                     /gene="ybfO"
                     /locus_tag="BSU_02310"
                     /old_locus_tag="BSU02310"
     downshifts      233287
                     /Source="Nicolas_upshifts"
                     /id="D87"
                     /incds=0
                     /nref=12
                     /ntot=60
                     /MaxReadThrough="3.64301"
                     /MaxDrop="6.34998"
                     /score="14.4442651"
                     /energy="-13.3"
                     /TU="U161"
                     /idTUdmin="U162"
                     /TUdmin="-1122"
                     /isTUend="FALSE"
     upshifts        233353
                     /Source="Nicolas_upshifts"
                     /id="U162"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.582417582417582"
                     /psig="0.838161838161838"
                     /xcortree=1579
                     /SigmaFactorBS="gtcccctgtggtaaacaggggatttttacatatcgcaaaaat
                     aatcaaaacatataatccgtgATCCATTATTCTAAAACAGAaaggagattggagcgtg
                     c"
                     /listShort="ybfP, S89"
                     /listLong="ybfQ"
     misc_feature    233356..233375
                     /Source="Nicolas_upshift_promotors"
                     /id="U162"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.582417582417582"
                     /psig="0.838161838161838"
                     /xcortree=1579
                     /SigmaFactorBS="gtcccctgtggtaaacaggggatttttacatatcgcaaaaat
                     aatcaaaacatataatccgtgATCCATTATTCTAAAACAGAaaggagattggagcgtg
                     c"
                     /listShort="ybfP, S89"
                     /listLong="ybfQ"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             233395..234282
                     /gene="ybfP"
                     /locus_tag="BSU_02320"
                     /old_locus_tag="BSU02320"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family)"
                     /protein_id="NP_388114.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02320"
                     /db_xref="EnsemblGenomes-Tr:CAB12026"
                     /db_xref="GOA:O31456"
                     /db_xref="InterPro:IPR008979"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="SubtiList:BG12744"
                     /db_xref="UniProtKB/Swiss-Prot:O31456"
                     /translation="MYYEKAVQKTINWIESHLHEQISNEDIVNVSSFSKFHFHRIFQK
                     EVGMSVASYIRLRRLANAAAALLYTDHRIIDIALYYQFESQEAFTRTFKKMYHMPPGA
                     YRTFMKRFTSKKEESYMEKKMKGWVLSGSHPFQFEMGIDRENVHQGKASGYLKSTMVQ
                     DIGEFATMMQQFKADRYLGKRLRLSSFIKTKGVQHFASLWMRVDSAADDVLQFDNMSN
                     RPITGTTNWNHYAIVLDVPENSAVISFGVQLSGPGQVWMDHVVFEEVDESVPSTNLEM
                     PGELLDEPVNLSFEEELQK*"
     gene            233395..234282
                     /gene="ybfP"
                     /locus_tag="BSU_02320"
                     /old_locus_tag="BSU02320"
     S_feature       234283..234426
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_252315_252458"
                     /HighExp="T0.30H, T-1.40H, T0.0H, T-1.10H, Salt, aero,
                     ferm, T-0.40H, T-2.40H, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigWXY"
                     /TUshortPSig="0.838, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S89"
     promotor_-35    234398..234405
                     /Source="Nicolas_upshift_promotors"
                     /id="U163"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2069
                     /SigmaFactorBS="gcttggatatttttatcagtctgggcggatCTGTTCATcttt
                     gcggcatttTCCTGTATGATATAGTAAGAgtgtgcatagcaactaactataattgaac
                     a"
                     /listShort="ybfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    234419..234438
                     /Source="Nicolas_upshift_promotors"
                     /id="U163"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2069
                     /SigmaFactorBS="gcttggatatttttatcagtctgggcggatCTGTTCATcttt
                     gcggcatttTCCTGTATGATATAGTAAGAgtgtgcatagcaactaactataattgaac
                     a"
                     /listShort="ybfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        234428
                     /Source="Nicolas_upshifts"
                     /id="U163"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig=1
                     /xcortree=2069
                     /SigmaFactorBS="gcttggatatttttatcagtctgggcggatCTGTTCATcttt
                     gcggcatttTCCTGTATGATATAGTAAGAgtgtgcatagcaactaactataattgaac
                     a"
                     /listShort="ybfQ"
                     /GFF_Attribute="listLong"
     CDS             234482..235450
                     /gene="ybfQ"
                     /locus_tag="BSU_02330"
                     /old_locus_tag="BSU02330"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10939241, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme with rhodanese domain"
                     /protein_id="NP_388115.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02330"
                     /db_xref="EnsemblGenomes-Tr:CAB12027"
                     /db_xref="InterPro:IPR001763"
                     /db_xref="InterPro:IPR020936"
                     /db_xref="InterPro:IPR022111"
                     /db_xref="InterPro:IPR036873"
                     /db_xref="SubtiList:BG12745"
                     /db_xref="UniProtKB/Swiss-Prot:O31457"
                     /translation="MEKQYRVLLYYKYVPIEDPEAFREQHLAFCKELGLLGRILVSSE
                     GINGTVSGTVEQTEKYMETMKADPRFADMVFKIDEAEGHAFKKIFVRHKKELVTLRLE
                     DDVDPNETTGQHLKPAEFYEKMQDPNTIVIDARNDYEYDLGHFRGAVRPDIEAFRELP
                     EWIEEHKDMLEGKKILTYCTGGVRCEKFSGWLVKQGFEDVAQLDGGIVTYGKDPEVQG
                     KLWDGQCYVFDERISVPVNRVEHVIVGKDYFTGEPCERYVNCANPSCNKKMICTPENE
                     YKYMRSCSHECRTNPRNLYVKEHNMTEEEVNARLAAIETEDHAAAE*"
     gene            234482..235450
                     /gene="ybfQ"
                     /locus_tag="BSU_02330"
                     /old_locus_tag="BSU02330"
     promotor_-10    complement(235304..235322)
                     /Source="Nicolas_upshift_promotors"
                     /id="U164"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=798
                     /SigmaFactorBS="attatgctctttcacatacaggtttcttgggttcgtgcGGCA
                     TTcgtggctgcagctgcGCATATATTTATACTCATTttccggtgtgcatatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(235321)
                     /Source="Nicolas_upshifts"
                     /id="U164"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=798
                     /SigmaFactorBS="attatgctctttcacatacaggtttcttgggttcgtgcGGCA
                     TTcgtggctgcagctgcGCATATATTTATACTCATTttccggtgtgcatatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(235338..235343)
                     /Source="Nicolas_upshift_promotors"
                     /id="U164"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=798
                     /SigmaFactorBS="attatgctctttcacatacaggtttcttgggttcgtgcGGCA
                     TTcgtggctgcagctgcGCATATATTTATACTCATTttccggtgtgcatatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      235447
                     /Source="Nicolas_upshifts"
                     /id="D88"
                     /incds=0
                     /nref=238
                     /ntot=271
                     /MaxReadThrough="2.06825"
                     /MaxDrop="7.49655"
                     /score="4.11635522"
                     /energy="-7.8"
                     /TU="U163"
                     /idTUdmin="U161"
                     /TUdmin=4
                     /isTUend="TRUE"
     downshifts      complement(235486)
                     /Source="Nicolas_upshifts"
                     /id="D89"
                     /incds=0
                     /nref=59
                     /ntot=147
                     /MaxReadThrough="0.54212"
                     /MaxDrop="6.33244"
                     /score="2.56774646"
                     /energy="-7.5"
                     /TU="NA"
                     /idTUdmin="U165"
                     /TUdmin=11
                     /isTUend="TRUE"
     CDS             complement(235486..236730)
                     /gene="gltP"
                     /locus_tag="BSU_02340"
                     /old_locus_tag="BSU02340"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7751298, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7751298, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proton/glutamate symport protein"
                     /protein_id="NP_388116.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02340"
                     /db_xref="EnsemblGenomes-Tr:CAB12028"
                     /db_xref="GOA:P39817"
                     /db_xref="InterPro:IPR001991"
                     /db_xref="InterPro:IPR018107"
                     /db_xref="InterPro:IPR033380"
                     /db_xref="InterPro:IPR036458"
                     /db_xref="SubtiList:BG11015"
                     /db_xref="UniProtKB/Swiss-Prot:P39817"
                     /translation="MKKLIAFQILIALAVGAVIGHFFPDFGMALRPVGDGFIRLIKMI
                     VVPIVFSTIVIGAAGSGSMKKMGSLGIKTIIWFEVITTLVLGLGLLLANVLKPGVGLD
                     LSHLAKKDIHELSGYTDKVVDFKQMILDIIPTNIIDVMARNDLLAVIFFAILFGVAAA
                     GIGKASEPVMKFFESTAQIMFKLTQIVMVTAPIGVLALMAASVGQYGIELLLPMFKLV
                     GTVFLGLFLILFVLFPLVGLIFQIKYFEVLKMIWDLFLIAFSTTSTETILPQLMDRME
                     KYGCPKRVVSFVVPSGLSLNCDGSSLYLSVSCIFLAQAFQVDMTLSQQLLMMLVLVMT
                     SKGIAAVPSGSLVVLLATANAVGLPAEGVAIIAGVDRVMDMARTGVNVPGHAIACIVV
                     SKWEKAFRQKEWVSANSQTESI*"
     gene            complement(235486..236730)
                     /gene="gltP"
                     /locus_tag="BSU_02340"
                     /old_locus_tag="BSU02340"
     promotor_-10    complement(236764..236782)
                     /Source="Nicolas_upshift_promotors"
                     /id="U165"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=525
                     /SigmaFactorBS="tgaaagcgctgtcaaaataaaataacttgaaaAAAGGTGTTt
                     gcatttgaaTCACGAATGATATGAATATgcctacattctatcgttctaaagggggatt
                     c"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(236773)
                     /Source="Nicolas_upshifts"
                     /id="U165"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=525
                     /SigmaFactorBS="tgaaagcgctgtcaaaataaaataacttgaaaAAAGGTGTTt
                     gcatttgaaTCACGAATGATATGAATATgcctacattctatcgttctaaagggggatt
                     c"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(236793..236801)
                     /Source="Nicolas_upshift_promotors"
                     /id="U165"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=525
                     /SigmaFactorBS="tgaaagcgctgtcaaaataaaataacttgaaaAAAGGTGTTt
                     gcatttgaaTCACGAATGATATGAATATgcctacattctatcgttctaaagggggatt
                     c"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(236801..236819)
                     /Source="Nicolas_upshift_promotors"
                     /id="U166"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.949050949050949"
                     /psig="0.949050949050949"
                     /xcortree=797
                     /SigmaFactorBS="taaaaaagtcccccctgctgcgggggactttttcgccAACAT
                     AatgaaagcgctgtcaAAATAAAATAACTTGAAAAaaggtgtttgcatttgaatcacg
                     a"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(236817)
                     /Source="Nicolas_upshifts"
                     /id="U166"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.949050949050949"
                     /psig="0.949050949050949"
                     /xcortree=797
                     /SigmaFactorBS="taaaaaagtcccccctgctgcgggggactttttcgccAACAT
                     AatgaaagcgctgtcaAAATAAAATAACTTGAAAAaaggtgtttgcatttgaatcacg
                     a"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(236835..236840)
                     /Source="Nicolas_upshift_promotors"
                     /id="U166"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.949050949050949"
                     /psig="0.949050949050949"
                     /xcortree=797
                     /SigmaFactorBS="taaaaaagtcccccctgctgcgggggactttttcgccAACAT
                     AatgaaagcgctgtcaAAATAAAATAACTTGAAAAaaggtgtttgcatttgaatcacg
                     a"
                     /listShort="gltP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(236875..238770)
                     /gene="gamP"
                     /locus_tag="BSU_02350"
                     /old_locus_tag="BSU02350"
                     /EC_number="2.7.1.193"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10627040, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     glucosamine-specific enzyme IICBA component"
                     /protein_id="NP_388117.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02350"
                     /db_xref="EnsemblGenomes-Tr:CAB12029"
                     /db_xref="GOA:P39816"
                     /db_xref="InterPro:IPR001127"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR011055"
                     /db_xref="InterPro:IPR011299"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG11014"
                     /db_xref="UniProtKB/Swiss-Prot:P39816"
                     /translation="MFKKAFQILQQLGRALMTPVAVLPAAGLLLRFGDKDLLNIPIIK
                     DAGGVVFDNLPLIFAVGVAIGLAGGEGVAGLAAVIGYLILTVTLDNMGKLLGLQPPYE
                     GAEHLIDMGVFGGIIIGLLAAYLYKRFSSIELHPVLGFFSGKRFVPIITSVSSLVIGV
                     IFSFVWPLIQNGINAASSLIADSTVGLFFYATIYRLLIPFGLHHIFYTPFYFMMGEYT
                     DPSTGNTVTGDLTRFFAGDPTAGRFMMGDFPYMIFCLPAVALAIIHTARPEKKKMISG
                     VMISAALTSMLTGITEPVEFSFLFVAPVLYLINSILAGVIFVVCDLFHVRHGYTFSGG
                     GIDYVLNYGLSTNGWVVIPVGIVFAFIYYYLFRFAILKWNLKTPGRETDEDGQNEEKA
                     PVAKDQLAFHVLQALGGQQNIANLDACITRLRVTVHQPSQVCKDELKRLGAVGVLEVN
                     NNFQAIFGTKSDALKDDIKTIMAGGVPATAAALDTVTDKPLKPDSDETFIYPIKGETV
                     SLGDVPDQVFSEKMMGEGFAIIPSEGKVVAPADGEIVSIFPTKHAIGFMSAGGTEILI
                     HVGIDTVKLNGEGFEAHVTSGQAVKQGELLLTFDLNYIKQHAASAITPVIFTNTSEED
                     LKHIQMK*"
     gene            complement(236875..238770)
                     /gene="gamP"
                     /locus_tag="BSU_02350"
                     /old_locus_tag="BSU02350"
     downshifts      complement(236891)
                     /Source="Nicolas_upshifts"
                     /id="D90"
                     /incds=0
                     /nref=56
                     /ntot=192
                     /MaxReadThrough="1.9947"
                     /MaxDrop="6.51864"
                     /score="5.87664177"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U168"
                     /TUdmin="-8"
                     /isTUend="TRUE"
     misc_feature    238636..238655
                     /Source="Nicolas_upshift_promotors"
                     /id="U167"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.701298701298701"
                     /psig="0.975024975024975"
                     /xcortree=2747
                     /SigmaFactorBS="cggcgaaaatcagcggaaggttatcgaatacaacgccgcccg
                     cATCCTTTATAATAGGGATGTtcagtaaatccttgtctccgaaacggagcaaaagacc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        238653
                     /Source="Nicolas_upshifts"
                     /id="U167"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.701298701298701"
                     /psig="0.975024975024975"
                     /xcortree=2747
                     /SigmaFactorBS="cggcgaaaatcagcggaaggttatcgaatacaacgccgcccg
                     cATCCTTTATAATAGGGATGTtcagtaaatccttgtctccgaaacggagcaaaagacc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             complement(238791..239540)
                     /gene="gamA"
                     /locus_tag="BSU_02360"
                     /old_locus_tag="BSU02360"
                     /EC_number="3.5.99.6"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:23667565, 27002132"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23667565, 27002132;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="NP_388118.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02360"
                     /db_xref="EnsemblGenomes-Tr:CAB12030"
                     /db_xref="GOA:O31458"
                     /db_xref="InterPro:IPR004547"
                     /db_xref="InterPro:IPR006148"
                     /db_xref="InterPro:IPR018321"
                     /db_xref="SubtiList:BG12746"
                     /db_xref="UniProtKB/Swiss-Prot:O31458"
                     /translation="MKILIAEHYEELCKLSAAIIKEQIQAKKDAVLGLATGSTPVGLY
                     KQLISDYQAGEIDFSKVTTFNLDEYAGLSPSHPQSYNHFMHEHLFQHINMQPDHIHIP
                     QGDNPQLEAACKVYEDLIRQAGGIDVQILGIGANGHIGFNEPGSDFEDRTRVVKLSES
                     TIQANARFFGGDPVLVPRLAISMGIKTIMEFSKHIVLLASGEEKADAIQKMAEGPVTT
                     DVPASILQKHNHVTVIADYKAAQKLKSASFS*"
     gene            complement(238791..239540)
                     /gene="gamA"
                     /locus_tag="BSU_02360"
                     /old_locus_tag="BSU02360"
     S_feature       239513..239694
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_257545_257726"
                     /HighExp="H2O2, T1.30H, G135, dia15, G150, G180, LBGstat,
                     T2.0H, T0.30H, M9-stat"
                     /AntisenseName="nagBB"
                     /AntisenseCor="0.458837556034909"
                     /AntisenseRegPval="-14.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S90"
     S_feature       complement(239541..239611)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_257573_257643_c"
                     /HighExp="S1, Diami, MG 5, MG t5, dia5, MG 15, MG 10,
                     LPhT, Paraq, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S91"
     promotor_-10    complement(239600..239619)
                     /Source="Nicolas_upshift_promotors"
                     /id="U168"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2202
                     /SigmaFactorBS="atccttcttttataacaaattttcagaaattaaTATTGACAg
                     tttgataagggcggTGCTAAATTCGTAATGACAAgtatcataaattggtcataacaaa
                     t"
                     /listShort="S91, nagBB, nagP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(239615)
                     /Source="Nicolas_upshifts"
                     /id="U168"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2202
                     /SigmaFactorBS="atccttcttttataacaaattttcagaaattaaTATTGACAg
                     tttgataagggcggTGCTAAATTCGTAATGACAAgtatcataaattggtcataacaaa
                     t"
                     /listShort="S91, nagBB, nagP"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(239635..239642)
                     /Source="Nicolas_upshift_promotors"
                     /id="U168"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2202
                     /SigmaFactorBS="atccttcttttataacaaattttcagaaattaaTATTGACAg
                     tttgataagggcggTGCTAAATTCGTAATGACAAgtatcataaattggtcataacaaa
                     t"
                     /listShort="S91, nagBB, nagP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    239681..239688
                     /Source="Nicolas_upshift_promotors"
                     /id="U169"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=1865
                     /SigmaFactorBS="gtcaatattaatttctgaaaatttgttataaaagaaggatac
                     aaaTCTTTCATattgggagggcaAATGGTATTATGGTCTCAATgaaaaagaacggatt
                     g"
                     /listShort="ybgA, ybgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        239696
                     /Source="Nicolas_upshifts"
                     /id="U169"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=1865
                     /SigmaFactorBS="gtcaatattaatttctgaaaatttgttataaaagaaggatac
                     aaaTCTTTCATattgggagggcaAATGGTATTATGGTCTCAATgaaaaagaacggatt
                     g"
                     /listShort="ybgA, ybgB"
                     /GFF_Attribute="listLong"
     promotor_-10    239701..239720
                     /Source="Nicolas_upshift_promotors"
                     /id="U169"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=1865
                     /SigmaFactorBS="gtcaatattaatttctgaaaatttgttataaaagaaggatac
                     aaaTCTTTCATattgggagggcaAATGGTATTATGGTCTCAATgaaaaagaacggatt
                     g"
                     /listShort="ybgA, ybgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             239759..240466
                     /gene="gamR"
                     /locus_tag="BSU_02370"
                     /old_locus_tag="BSU02370"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:23667565, 24673833"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23667565, 24673833;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator-GlcN6P (GntR family)"
                     /protein_id="NP_388119.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02370"
                     /db_xref="EnsemblGenomes-Tr:CAB12031"
                     /db_xref="GOA:O31459"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR011663"
                     /db_xref="InterPro:IPR028978"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12747"
                     /db_xref="UniProtKB/Swiss-Prot:O31459"
                     /translation="MTALYSVIKFKIIELIKSGKYQANDQLPTESEFCEQYDVSRTTV
                     RLALQQLELEGYIKRIQGKGTFVSAAKIQTPIPHKITSFAEQMRGLRSESKVLELVVI
                     PADHSIAELLKMKENEPVNKLVRVRYAEGEPLQYHTSYIPWKAAPGLAQEECTGSLFE
                     LLRTKYNIEISRGTESIEPILTDETISGHLLTNVGAPAFLSESLTYDKNEEVVEYAQI
                     ITRGDRTKFTVEQSYHS*"
     gene            239759..240466
                     /gene="gamR"
                     /locus_tag="BSU_02370"
                     /old_locus_tag="BSU02370"
     promotor_-35    240432..240433
                     /Source="Nicolas_upshift_promotors"
                     /id="U170"
                     /multdbtbs="SigY"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.41958041958042"
                     /psig="0.41958041958042"
                     /xcortree=1684
                     /SigmaFactorBS="aatatgcgcaaattattacacggggagaccgaaCGaaattca
                     ccgtagaaCAGTCATATCATTCAtaaagcaatgtgttttaagaagggaatggtggttc
                     t"
                     /listShort="ybgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    240449..240463
                     /Source="Nicolas_upshift_promotors"
                     /id="U170"
                     /multdbtbs="SigY"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.41958041958042"
                     /psig="0.41958041958042"
                     /xcortree=1684
                     /SigmaFactorBS="aatatgcgcaaattattacacggggagaccgaaCGaaattca
                     ccgtagaaCAGTCATATCATTCAtaaagcaatgtgttttaagaagggaatggtggttc
                     t"
                     /listShort="ybgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        240459
                     /Source="Nicolas_upshifts"
                     /id="U170"
                     /multdbtbs="SigY"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.41958041958042"
                     /psig="0.41958041958042"
                     /xcortree=1684
                     /SigmaFactorBS="aatatgcgcaaattattacacggggagaccgaaCGaaattca
                     ccgtagaaCAGTCATATCATTCAtaaagcaatgtgttttaagaagggaatggtggttc
                     t"
                     /listShort="ybgB"
                     /GFF_Attribute="listLong"
     CDS             240500..240775
                     /gene="ybgB"
                     /locus_tag="BSU_02380"
                     /old_locus_tag="BSU02380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12897008, 23667565"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function (B.
                     subtilis-specific)"
                     /protein_id="NP_388120.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02380"
                     /db_xref="EnsemblGenomes-Tr:CAB12032"
                     /db_xref="GOA:O31460"
                     /db_xref="InterPro:IPR012867"
                     /db_xref="SubtiList:BG12748"
                     /db_xref="UniProtKB/Swiss-Prot:O31460"
                     /translation="MFLFTNGKVLWGAVIAAFILSIVFYPFLPTQMPIHYDVANSPDL
                     TVNKLAGTVMLPVLMVVFAWARKINWQFVFAVYILLICHIVVLCLAL*"
     gene            240500..240775
                     /gene="ybgB"
                     /locus_tag="BSU_02380"
                     /old_locus_tag="BSU02380"
     promotor_-10    complement(240558..240576)
                     /Source="Nicolas_upshift_promotors"
                     /id="U171"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.977022977022977"
                     /psig="0.977022977022977"
                     /xcortree=112
                     /SigmaFactorBS="ggactgttcgcaacatcataatgaatcGGCATCTgcgtcggc
                     agaaaaGGGTAAAATACAATTGAAAggatgaatgcagcaatcactgctccccacagca
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(240564)
                     /Source="Nicolas_upshifts"
                     /id="U171"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.977022977022977"
                     /psig="0.977022977022977"
                     /xcortree=112
                     /SigmaFactorBS="ggactgttcgcaacatcataatgaatcGGCATCTgcgtcggc
                     agaaaaGGGTAAAATACAATTGAAAggatgaatgcagcaatcactgctccccacagca
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(240591..240597)
                     /Source="Nicolas_upshift_promotors"
                     /id="U171"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.977022977022977"
                     /psig="0.977022977022977"
                     /xcortree=112
                     /SigmaFactorBS="ggactgttcgcaacatcataatgaatcGGCATCTgcgtcggc
                     agaaaaGGGTAAAATACAATTGAAAggatgaatgcagcaatcactgctccccacagca
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      240767
                     /Source="Nicolas_upshifts"
                     /id="D91"
                     /incds=0
                     /nref=20
                     /ntot=130
                     /MaxReadThrough="2.42422"
                     /MaxDrop="3.75723"
                     /score="4.58454735"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U169"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    240818..240822
                     /Source="Nicolas_upshift_promotors"
                     /id="U172"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig="0.998001998001998"
                     /xcortree=2879
                     /SigmaFactorBS="gccagaataaaactggctgttttctttaatttcaGCTTCatc
                     tgacaatgaatgTGGTGTATAATAGCTGATGAtcctaaagaatattctgaaatttata
                     g"
                     /listShort="S92, ilvE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    240838..240857
                     /Source="Nicolas_upshift_promotors"
                     /id="U172"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig="0.998001998001998"
                     /xcortree=2879
                     /SigmaFactorBS="gccagaataaaactggctgttttctttaatttcaGCTTCatc
                     tgacaatgaatgTGGTGTATAATAGCTGATGAtcctaaagaatattctgaaatttata
                     g"
                     /listShort="S92, ilvE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        240844
                     /Source="Nicolas_upshifts"
                     /id="U172"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig="0.998001998001998"
                     /xcortree=2879
                     /SigmaFactorBS="gccagaataaaactggctgttttctttaatttcaGCTTCatc
                     tgacaatgaatgTGGTGTATAATAGCTGATGAtcctaaagaatattctgaaatttata
                     g"
                     /listShort="S92, ilvE"
                     /GFF_Attribute="listLong"
     S_feature       240855..240983
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_258887_259015"
                     /HighExp="T2.30H, S5, T2.0H, T1.30H, M9-stat, T3.0H,
                     T3.30H, S4, T1.0H, T-0.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S92"
     CDS             240984..242054
                     /gene="ilvE"
                     /locus_tag="BSU_02390"
                     /old_locus_tag="BSU02390"
                     /EC_number="2.6.1.42"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12670965, 15060025, 15102328, 20332210, 23429746"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12670965, 15060025,
                     15102328, 20332210, 23429746; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine-valine aminotransferase / aromatic
                     amino acid aminotransferase"
                     /protein_id="NP_388121.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02390"
                     /db_xref="EnsemblGenomes-Tr:CAB12033"
                     /db_xref="GOA:O31461"
                     /db_xref="InterPro:IPR001544"
                     /db_xref="InterPro:IPR005786"
                     /db_xref="InterPro:IPR018300"
                     /db_xref="InterPro:IPR033939"
                     /db_xref="InterPro:IPR036038"
                     /db_xref="SubtiList:BG12749"
                     /db_xref="UniProtKB/Swiss-Prot:O31461"
                     /translation="MNKLIEREKTVYYKEKPDPSSLGFGQYFTDYMFVMDYEEGIGWH
                     HPRIAPYAPLTLDPSSSVFHYGQAVFEGLKAYRTDDGRVLLFRPDQNIKRLNRSCERM
                     SMPPLDEELVLEALTQLVELEKDWVPKEKGTSLYIRPFVIATEPSLGVKASRSYTFMI
                     VLSPVGSYYGDDQLKPVRIYVEDEYVRAVNGGVGFAKTAGNYAASLQAQRKANELGYD
                     QVLWLDAIEKKYVEEVGSMNIFFVINGEAVTPALSGSILSGVTRASAIELIRSWGIPV
                     REERISIDEVYAASARGELTEVFGTGTAAVVTPVGELNIHGKTVIVGDGQIGDLSKKL
                     YETITDIQLGKVKGPFNWTVEV*"
     gene            240984..242054
                     /gene="ilvE"
                     /locus_tag="BSU_02390"
                     /old_locus_tag="BSU02390"
     downshifts      242043
                     /Source="Nicolas_upshifts"
                     /id="D92"
                     /incds=0
                     /nref=124
                     /ntot=245
                     /MaxReadThrough="1.34575"
                     /MaxDrop="6.88046"
                     /score="13.1364544"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U172"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(242091..243503)
                     /gene="ybgF"
                     /locus_tag="BSU_02400"
                     /old_locus_tag="BSU02400"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7704263, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid permease"
                     /protein_id="NP_388122.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02400"
                     /db_xref="EnsemblGenomes-Tr:CAB12034"
                     /db_xref="GOA:O31462"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004840"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="SubtiList:BG12750"
                     /db_xref="UniProtKB/Swiss-Prot:O31462"
                     /translation="MNSAHNKNETTFQRSMKSRHLFMLSLGGVIGTGLFLSSGYTIQQ
                     AGPAGTILAYLVGAGIVYLVMLCLGELSVAMPVTGAFHTYAAKYIGPGTGFTVAWLYW
                     LTWTVALGSEFTAAGLLMQRWFPHTSVWMWSAVFALFIFLLNAFSVKFFAESEFWFSS
                     IKVLAIVLFILLGGSAMFGIIPIKGGEAAPMLSNFTAEGGLFPNGFVPILMTMLSVNF
                     AFSGTELIGIAAGESVDPDKTIPKAIKTTVWRLSLFFVGTIFVLSGLIPIQDAGVIKS
                     PFVAVFDRVGVPYAADIMNFVILTAILSAANSGLYASSRMLWSLSKEKTLHPTFAKLT
                     SKGTPFNALVFSMIGGILSLLSSVFAPDTVYVVLVSISGFAVVVVWMGIAASQFMFRK
                     RYIEAGNKVTDLKYRTPLYPFVPIAAFLLCLASVVGIAFDPNQRIALYCGVPFMAICY
                     AIYYVKNRKSQPAADMTHSK*"
     gene            complement(242091..243503)
                     /gene="ybgF"
                     /locus_tag="BSU_02400"
                     /old_locus_tag="BSU02400"
     downshifts      complement(242108)
                     /Source="Nicolas_upshifts"
                     /id="D93"
                     /incds=0
                     /nref=43
                     /ntot=166
                     /MaxReadThrough="0.37503"
                     /MaxDrop="5.92001"
                     /score="6.94246417"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U173"
                     /TUdmin="-11"
                     /isTUend="TRUE"
     S_feature       complement(243504..243615)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_261536_261647_c"
                     /HighExp="BMM, S1, MG 45, MG 60, UNK1, MG t5, MG 10, MG
                     90, MG-0.2, M9-exp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S93"
     promotor_-10    complement(243588..243607)
                     /Source="Nicolas_upshift_promotors"
                     /id="U173"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig=1
                     /xcortree=3071
                     /SigmaFactorBS="cgaaaatattcaagaaattgcggcttgggcccgctctttaaa
                     aacaACTTGACTtatcggaatagtttGTATATTCTAACTTAAAGCCggttcgccggag
                     t"
                     /listShort="S93, ybgF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(243615)
                     /Source="Nicolas_upshifts"
                     /id="U173"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig=1
                     /xcortree=3071
                     /SigmaFactorBS="cgaaaatattcaagaaattgcggcttgggcccgctctttaaa
                     aacaACTTGACTtatcggaatagtttGTATATTCTAACTTAAAGCCggttcgccggag
                     t"
                     /listShort="S93, ybgF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(243622..243629)
                     /Source="Nicolas_upshift_promotors"
                     /id="U173"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig=1
                     /xcortree=3071
                     /SigmaFactorBS="cgaaaatattcaagaaattgcggcttgggcccgctctttaaa
                     aacaACTTGACTtatcggaatagtttGTATATTCTAACTTAAAGCCggttcgccggag
                     t"
                     /listShort="S93, ybgF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(243624..244571)
                     /gene="ybgG"
                     /locus_tag="BSU_02410"
                     /old_locus_tag="BSU02410"
                     /EC_number="2.1.1.10"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11267663, 15995196,
                     17264075; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine methylase using (R,S)AdoMet"
                     /protein_id="NP_388123.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02410"
                     /db_xref="EnsemblGenomes-Tr:CAB12035"
                     /db_xref="GOA:O31463"
                     /db_xref="InterPro:IPR003726"
                     /db_xref="InterPro:IPR017226"
                     /db_xref="InterPro:IPR036589"
                     /db_xref="SubtiList:BG12751"
                     /db_xref="UniProtKB/Swiss-Prot:O31463"
                     /translation="MNPIQHILDTYPLIVLDGAMATELERKGCNLNDSLWSAKILMEE
                     PELIKQVHTDYFAAGADCAITASYQSTFEGFAARGLSEAEARRLIELSVSIAAEARDE
                     FWSLEENRLNRPKPIIAASIGPYGAYLADGSEYRGNYAISEDELIEFHRPRMKALIEA
                     GADVLACETIPCLTEAKAIVRLLKEFPETYAWISFSAKDGLHISDGTPAADCASWLDE
                     HRQIAALGINCTPLQHIPSLIEELKKNTSKPIIVYPNSGEQYDPETKTWNGAACAESY
                     GASARTWHEKGARLIGGCCRTKPENIQEIAAWARSLKTT*"
     gene            complement(243624..244571)
                     /gene="ybgG"
                     /locus_tag="BSU_02410"
                     /old_locus_tag="BSU02410"
     promotor_-10    complement(244609..244628)
                     /Source="Nicolas_upshift_promotors"
                     /id="U174"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=3068
                     /SigmaFactorBS="agacatatgggctgaacacctttctctttttgcgttTATTGA
                     CAaacacgtaagcctcCATTACGATTTTCATATCTTtttcaaaaaaatctgaaagaag
                     g"
                     /listShort="ybgG"
                     /listLong="S93, ybgF"
                     /label="promotor_-10"
     upshifts        complement(244626)
                     /Source="Nicolas_upshifts"
                     /id="U174"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=3068
                     /SigmaFactorBS="agacatatgggctgaacacctttctctttttgcgttTATTGA
                     CAaacacgtaagcctcCATTACGATTTTCATATCTTtttcaaaaaaatctgaaagaag
                     g"
                     /listShort="ybgG"
                     /listLong="S93, ybgF"
     promotor_-35    complement(244643..244650)
                     /Source="Nicolas_upshift_promotors"
                     /id="U174"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=3068
                     /SigmaFactorBS="agacatatgggctgaacacctttctctttttgcgttTATTGA
                     CAaacacgtaagcctcCATTACGATTTTCATATCTTtttcaaaaaaatctgaaagaag
                     g"
                     /listShort="ybgG"
                     /listLong="S93, ybgF"
                     /label="promotor_-35"
     CDS             complement(244700..246136)
                     /gene="glnT"
                     /locus_tag="BSU_02420"
                     /old_locus_tag="BSU02420"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15849754, 15995196,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine transporter"
                     /protein_id="NP_388124.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02420"
                     /db_xref="EnsemblGenomes-Tr:CAB12036"
                     /db_xref="GOA:O31464"
                     /db_xref="InterPro:IPR001463"
                     /db_xref="SubtiList:BG12752"
                     /db_xref="UniProtKB/Swiss-Prot:O31464"
                     /translation="MQQILEHIVGIANDLLWSKLLIVLLLSFGIYFTFRLKFLQVRML
                     KEMVRVLREGAASRSKNSISPFQAFCISMAARVGTGNITGIAIAIALGGPGAIFWMWI
                     IAIIGSASSFVESTLAQIYKVKDVNGFRGGPAYYMEKGLNKRWMGALFAVLITLSFGI
                     VFNSVQSNTVSLAFENAFGTNRLTLGLILIAVFGTIIFGGVKRIAKLAESIVVVLAVL
                     YIGVAFFVIFSNITQLPGVLALIVKNAFGFDQAAGGALGAALMQGVRRGIFSNEAGMG
                     SAPNAAATATTSHPVKQGLIQAFGVLTDTLVICTSTAFIILFSDAYHTPGLSGIALTQ
                     ASLSSHVGSWASGFLAILILLFGFCALIGNYYYGETNIGFLNKSKKLIFVYRIGVLAM
                     IVFGCVAKVQLVWDLADLFMGLMVIVNLIAIFLLSKVVFTALKDYTRQKKAGKDPVFY
                     KDVLKNHNGIECWPVSDTKTDTHNKQIS*"
     gene            complement(244700..246136)
                     /gene="glnT"
                     /locus_tag="BSU_02420"
                     /old_locus_tag="BSU02420"
     downshifts      complement(244715)
                     /Source="Nicolas_upshifts"
                     /id="D94"
                     /incds=0
                     /nref=3
                     /ntot=3
                     /MaxReadThrough="0.598370000000001"
                     /MaxDrop="4.3935"
                     /score="-7.90227391"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U174"
                     /TUdmin="-1078"
                     /isTUend="FALSE"
     CDS             complement(246159..247142)
                     /gene="glsA"
                     /locus_tag="BSU_02430"
                     /old_locus_tag="BSU02430"
                     /EC_number="3.5.1.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15995196, 18459799, 20050917"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15995196, 18459799,
                     20050917; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase"
                     /protein_id="NP_388125.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02430"
                     /db_xref="EnsemblGenomes-Tr:CAB12037"
                     /db_xref="GOA:O31465"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR015868"
                     /db_xref="PDB:1MKI"
                     /db_xref="PDB:2OSU"
                     /db_xref="PDB:3AGF"
                     /db_xref="PDB:3BRM"
                     /db_xref="SubtiList:BG12753"
                     /db_xref="UniProtKB/Swiss-Prot:O31465"
                     /translation="MKELIKEHQKDINPALQLHDWVEYYRPFAANGQSANYIPALGKV
                     NDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIPYVLDRVDVEPT
                     GDAFNSIIRLEINKPGKPFNPMINAGALTIASILPGESAYEKLEFLYSVMETLIGKRP
                     RIHEEVFRSEWETAHRNRALAYYLKETNFLEAEVEETLEVYLKQCAMESTTEDIALIG
                     LILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVPAKSGVSGGIM
                     ALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLLKHMAQEWELSIF*"
     gene            complement(246159..247142)
                     /gene="glsA"
                     /locus_tag="BSU_02430"
                     /old_locus_tag="BSU02430"
     promotor_-10    complement(247236..247253)
                     /Source="Nicolas_upshift_promotors"
                     /id="U175"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.97002997002997"
                     /xcortree=1548
                     /SigmaFactorBS="tgcttattttcaaaatgtttttgtcgtATTTTGTAtgattct
                     gtagtctcCATTATACAGTAATTATAccttccgctattatgaaagcgtttaacgcccc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_feature    247241..247260
                     /Source="Nicolas_upshift_promotors"
                     /id="U176"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.908091908091908"
                     /psig=1
                     /xcortree=1812
                     /SigmaFactorBS="tcaaaacgaaggctaagggggcgttaaacgctttcataatag
                     cggaaggtataaTTACTGTATAATGGAGACTAcagaatcatacaaaatacgacaaaaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(247243)
                     /Source="Nicolas_upshifts"
                     /id="U175"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.97002997002997"
                     /xcortree=1548
                     /SigmaFactorBS="tgcttattttcaaaatgtttttgtcgtATTTTGTAtgattct
                     gtagtctcCATTATACAGTAATTATAccttccgctattatgaaagcgtttaacgcccc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     upshifts        247247
                     /Source="Nicolas_upshifts"
                     /id="U176"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.908091908091908"
                     /psig=1
                     /xcortree=1812
                     /SigmaFactorBS="tcaaaacgaaggctaagggggcgttaaacgctttcataatag
                     cggaaggtataaTTACTGTATAATGGAGACTAcagaatcatacaaaatacgacaaaaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(247269..247276)
                     /Source="Nicolas_upshift_promotors"
                     /id="U175"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.97002997002997"
                     /xcortree=1548
                     /SigmaFactorBS="tgcttattttcaaaatgtttttgtcgtATTTTGTAtgattct
                     gtagtctcCATTATACAGTAATTATAccttccgctattatgaaagcgtttaacgcccc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             247444..248676
                     /gene="glnJ"
                     /locus_tag="BSU_02440"
                     /old_locus_tag="BSU02440"
                     /EC_number="2.7.13.3"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15995196, 17001076, 21435182, 23461034,
                     25691471"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15995196,
                     17001076, 21435182, 23461034, 25691471; Product type rc :
                     receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [GlnL]
                     forglutamine degradation"
                     /protein_id="NP_388126.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02440"
                     /db_xref="EnsemblGenomes-Tr:CAB12038"
                     /db_xref="GOA:P40758"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG10871"
                     /db_xref="UniProtKB/Swiss-Prot:P40758"
                     /translation="MLITVPLAGELKFYPLNEEFRVSFGAPVFFFFLSLLRHVPAVLP
                     GFLTGAAVFIFRVFLELWGGGHNGLTPILYDQASGFFFYMTYACLFSILKANRFRERP
                     IMLGFIGFMIEVVSDCVELTVQFLIFHTVVTPEKITDIAVIAISHTFIVMSFYSVLKL
                     YETQSREKQTRQQHEHMLMIVSNLYEETVHLKKTLKTTEKVTNDSYQLYREMKGKDVQ
                     LSGRILRLAGEIHEVKKDNQRIFAGLSKLISNESLRDYMRASDLLQLVIRMNEKYAEA
                     LGKQIDFYCSIEGEHDEYHVFIVLSIINNLTANAVEAMDEEGMVSLRLRKPNESMVEF
                     QVEDNGPGISEKIGDIVFDPGFTSKYDEFGTPSTGIGLSYVKEIVTELEGDITFDNQQ
                     RGVVFAIRLPVRHLIQKG*"
     gene            247444..248676
                     /gene="glnJ"
                     /locus_tag="BSU_02440"
                     /old_locus_tag="BSU02440"
     CDS             248687..249631
                     /gene="glnL"
                     /locus_tag="BSU_02450"
                     /old_locus_tag="BSU02450"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15995196"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15995196;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [GlnJ] for
                     glutamine utilisation"
                     /protein_id="NP_388127.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02450"
                     /db_xref="EnsemblGenomes-Tr:CAB12039"
                     /db_xref="GOA:P40759"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR013972"
                     /db_xref="SubtiList:BG10872"
                     /db_xref="UniProtKB/Swiss-Prot:P40759"
                     /translation="MRFFIADDDRAVRSILRQIIEDEDLGEAAGEADDGSQVEGHMLQ
                     FKQIDILLIDLLMPGRDGIETIRQIQNTYSGKIVMISQVEAKEMVGEAYSLGIEYFIH
                     KPINRIEIVTVLQKVKERIELEHSIGAIQHSLSRLVNRTERKARPQQKSDSGLKEAGT
                     FLLSELGMMGEGGAHDLMAVLQYLAEHEQSEPHEKQSPSLKQIFTQVAVRKLGTGASQ
                     TEVNREMKASEQRIRRAIIHSLHHFASLGTTDFSNPKFETYASKFFDFPVVSQKMKEL
                     QSKDAKPLAPARINMKKFIHVFFLEAKLLHETMKQRRI*"
     gene            248687..249631
                     /gene="glnL"
                     /locus_tag="BSU_02450"
                     /old_locus_tag="BSU02450"
     downshifts      249608
                     /Source="Nicolas_upshifts"
                     /id="D95"
                     /incds=0
                     /nref=45
                     /ntot=191
                     /MaxReadThrough="1.43757"
                     /MaxDrop="3.64091"
                     /score="2.73020459"
                     /energy="-6.2"
                     /TU="NA"
                     /idTUdmin="U177"
                     /TUdmin="-484"
                     /isTUend="FALSE"
     promotor_-35    249728..249735
                     /Source="Nicolas_upshift_promotors"
                     /id="U177"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.982017982017982"
                     /psig="0.999000999001"
                     /xcortree=370
                     /SigmaFactorBS="gccggacagtgatttaccgcttttttataaaatatcagaaaa
                     taaagaTATTGACTtattgtttatttgTCTTACAATTAAACAAAAGGatatatgggaa
                     g"
                     /listShort="S94, ycbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       249740..249857
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_267772_267889"
                     /HighExp="Sw, BC, M40t90, Etha, MG-0.2, HiTm, HiOs, G135,
                     UNK1, MG-0.1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S94"
     upshifts        249740
                     /Source="Nicolas_upshifts"
                     /id="U177"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.982017982017982"
                     /psig="0.999000999001"
                     /xcortree=370
                     /SigmaFactorBS="gccggacagtgatttaccgcttttttataaaatatcagaaaa
                     taaagaTATTGACTtattgtttatttgTCTTACAATTAAACAAAAGGatatatgggaa
                     g"
                     /listShort="S94, ycbC"
                     /GFF_Attribute="listLong"
     promotor_-10    249749..249768
                     /Source="Nicolas_upshift_promotors"
                     /id="U177"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.982017982017982"
                     /psig="0.999000999001"
                     /xcortree=370
                     /SigmaFactorBS="gccggacagtgatttaccgcttttttataaaatatcagaaaa
                     taaagaTATTGACTtattgtttatttgTCTTACAATTAAACAAAAGGatatatgggaa
                     g"
                     /listShort="S94, ycbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             249858..250784
                     /gene="kdgD"
                     /locus_tag="BSU_02460"
                     /old_locus_tag="BSU02460"
                     /EC_number="4.2.1.41"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12044674; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxyglucarate dehydratase"
                     /protein_id="NP_388128.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02460"
                     /db_xref="EnsemblGenomes-Tr:CAB12040"
                     /db_xref="GOA:P42235"
                     /db_xref="InterPro:IPR002220"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR017655"
                     /db_xref="SubtiList:BG11158"
                     /db_xref="UniProtKB/Swiss-Prot:P42235"
                     /translation="MSRIRKAPAGILGFPVAPFNTQGKLEEEALFQNIEFLLNEGLEA
                     IFIACGSGEFQSLSQKEYEQMVEVAVSAAGGKVPVYTGVGGNLSTALDWAQLSEKKGA
                     DGYLILPPYLVHGEQEGLYQYAKTIIESTDLNAILYQRDNAVLSVEQIKRLTECEQLV
                     GVKDGVGNMDLNINLVYTIGDRLGWLNGMPMAEVTMPAYLPIGFHSYSSAISNYIPHI
                     SRMFYDALKNGNDELVKELYRHVILPINDIRKQRKGYAVSLIKAGMEIMGLNVRNTAR
                     PPVGPVEKDHYQQLEAILKQAADRFPKKAATV*"
     gene            249858..250784
                     /gene="kdgD"
                     /locus_tag="BSU_02460"
                     /old_locus_tag="BSU02460"
     CDS             250814..252280
                     /gene="gucD"
                     /locus_tag="BSU_02470"
                     /old_locus_tag="BSU02470"
                     /EC_number="1.2.1.26"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12044674, 17202142; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-dioxovalerate dehydrogenase
                     (alpha-ketoglutaric semialdehyde dehydrogenase)"
                     /protein_id="NP_388129.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02470"
                     /db_xref="EnsemblGenomes-Tr:CAB12041"
                     /db_xref="GOA:P42236"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016160"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="InterPro:IPR029510"
                     /db_xref="SubtiList:BG11159"
                     /db_xref="UniProtKB/Swiss-Prot:P42236"
                     /translation="MSVITEQNTYLNFINGEWVKSQSGDMVKVENPADVNDIVGYVQN
                     STAEDVERAVTAANEAKTAWRKLTGAERGQYLYKTADIMEQRLEEIAACATREMGKTL
                     PEAKGETARGIAILRYYAGEGMRKTGDVIPSTDKDALMFTTRVPLGVVGVISPWNFPV
                     AIPIWKMAPALVYGNTVVIKPATETAVTCAKIIACFEEAGLPAGVINLVTGPGSVVGQ
                     GLAEHDGVNAVTFTGSNQVGKIIGQAALARGAKYQLEMGGKNPVIVADDADLEAAAEA
                     VITGAFRSTGQKCTATSRVIVQSGIYERFKEKLLQRTKDITIGDSLKEDVWMGPIASK
                     NQLDNCLSYIEKGKQEGASLLIGGEKLENGKYQNGYYVQPAIFDNVTSEMTIAQEEIF
                     GPVIALIKVDSIEEALNIANDVKFGLSASIFTENIGRMLSFIDEIDAGLVRINAESAG
                     VELQAPFGGMKQSSSHSREQGEAAKDFFTAIKTVFVKP*"
     gene            250814..252280
                     /gene="gucD"
                     /locus_tag="BSU_02470"
                     /old_locus_tag="BSU02470"
     CDS             252364..253731
                     /gene="gudP"
                     /locus_tag="BSU_02480"
                     /old_locus_tag="BSU02480"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12044674, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12044674, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate transporter"
                     /protein_id="NP_388130.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02480"
                     /db_xref="EnsemblGenomes-Tr:CAB12042"
                     /db_xref="GOA:P42237"
                     /db_xref="InterPro:IPR000849"
                     /db_xref="InterPro:IPR004744"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG11160"
                     /db_xref="UniProtKB/Swiss-Prot:P42237"
                     /translation="MKKDFASVTPAGKKTSVRWFIVFMLFLVTSINYADRATLSITGD
                     SVQHDLGLDSVAMGYVFSAFGWAYVIGQLPGGWLLDRFGSKTIIALSIFFWSFFTLLQ
                     GAIGFFSAGTAIILLFALRFLVGLSEAPSFPGNGRVVASWFPSSERGTASAFFNSAQY
                     FAIVIFSPLMGWLTHSFGWHSVFVVMGIAGILLAVIWLKTVYEPKKHPKVNEAELAYI
                     EQGGGLISMDDSKSKQETESKWPYIKQLLTNRMLIGVYIAQYCITTLTYFFLTWFPVY
                     LVQARGMSILEAGFVASLPALCGFAGGVLGGIVSDILLKKGRSLTFARKVPIIAGMLL
                     SCSMIVCNYTDSAWLVVVIMSLAFFGKGFGALGWAVVSDTSPKECAGLSGGLFNTFGN
                     IASITTPIIIGYIVNATGSFNGALVFVGANAIAAILSYLLLVGPIKRVVLKKQEQDPD
                     QSLPV*"
     gene            252364..253731
                     /gene="gudP"
                     /locus_tag="BSU_02480"
                     /old_locus_tag="BSU02480"
     CDS             253768..255135
                     /gene="gudD"
                     /locus_tag="BSU_02490"
                     /old_locus_tag="BSU02490"
                     /EC_number="4.2.1.40"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9772161, 12044674; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="NP_388131.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02490"
                     /db_xref="EnsemblGenomes-Tr:CAB12043"
                     /db_xref="GOA:P42238"
                     /db_xref="InterPro:IPR013342"
                     /db_xref="InterPro:IPR017653"
                     /db_xref="InterPro:IPR029017"
                     /db_xref="InterPro:IPR029065"
                     /db_xref="InterPro:IPR034390"
                     /db_xref="InterPro:IPR034598"
                     /db_xref="InterPro:IPR036849"
                     /db_xref="SubtiList:BG11161"
                     /db_xref="UniProtKB/Swiss-Prot:P42238"
                     /translation="MSSPIQEQVQKEKRSNIPSISEMKVIPVAGHDSMLLNLSGAHSP
                     FFTRNIVILTDSSGNQGVGEVPGGEHIRRTLELSEPLVVGKSIGAYQAILQTVRKQFG
                     DQDRGGRGNQTFDLRTTVHAVTALEAALLDLLGKFLQEPVAALLGEGKQRDEVKMLGY
                     LFYIGDRNRTTLPYQSDEQSDCAWFRLRHEEALTPEAIVRLAESAQERYGFQDFKLKG
                     GVLRGEEEIEAVTALSKRFPEARITLDPNGAWSLEEAIALCKGKQDVLAYAEDPCGDE
                     NGYSAREVMAEFRRATGLPTATNMIATDWREMGHAIQLHAVDIPLADPHFWTMQGSVR
                     VAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGRITAIDTHWIWQDGQRLTKQPF
                     EISSGCVKVPDKPGLGVDIDMEQVEKAHEIYRKMNLGARNDAIPMQFLISNWEFDRKR
                     PCLVR*"
     gene            253768..255135
                     /gene="gudD"
                     /locus_tag="BSU_02490"
                     /old_locus_tag="BSU02490"
     promotor_-35    255149..255156
                     /Source="Nicolas_upshift_promotors"
                     /id="U178"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.999000999001"
                     /xcortree=2135
                     /SigmaFactorBS="gcgcccgtgtcttgtgcgataagtttgattgtaaaTATTGTC
                     AtatccgctattttgTCTTACAATTGAACAACTgaagggagagttgttcgtgtacgaa
                     g"
                     /listShort="ycbG, garD"
                     /listLong="S95, ycbJ, NA"
                     /label="promotor_-35"
     promotor_-10    255171..255188
                     /Source="Nicolas_upshift_promotors"
                     /id="U178"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.999000999001"
                     /xcortree=2135
                     /SigmaFactorBS="gcgcccgtgtcttgtgcgataagtttgattgtaaaTATTGTC
                     AtatccgctattttgTCTTACAATTGAACAACTgaagggagagttgttcgtgtacgaa
                     g"
                     /listShort="ycbG, garD"
                     /listLong="S95, ycbJ, NA"
                     /label="promotor_-10"
     upshifts        255174
                     /Source="Nicolas_upshifts"
                     /id="U178"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig="0.999000999001"
                     /xcortree=2135
                     /SigmaFactorBS="gcgcccgtgtcttgtgcgataagtttgattgtaaaTATTGTC
                     AtatccgctattttgTCTTACAATTGAACAACTgaagggagagttgttcgtgtacgaa
                     g"
                     /listShort="ycbG, garD"
                     /listLong="S95, ycbJ, NA"
     CDS             255205..255906
                     /gene="garR"
                     /locus_tag="BSU_02500"
                     /old_locus_tag="BSU02500"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12044674"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12044674; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (GntR family)"
                     /protein_id="NP_388132.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02500"
                     /db_xref="EnsemblGenomes-Tr:CAB12044"
                     /db_xref="GOA:P42239"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR008920"
                     /db_xref="InterPro:IPR011711"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG11162"
                     /db_xref="UniProtKB/Swiss-Prot:P42239"
                     /translation="MYEGLEDLKVDTVNRKTLAKQVIERIVHLLSSGQLRAGDKLPTE
                     MELMDILHVSRPVLREALSSLETLGVITRKTRGGTYFNDKIGMQPFSVMLALATDNLP
                     AIIEARMALELGLVTIAAEKINEEELQRLQKTIDDIANSTDNHYGEADKEFHRIIALS
                     ANNPVVEGMIQSLLITHAKIDSQIPYRERDVTVEYHKKIYDALAKRDPYKAHYHMYEH
                     LKFVRDKILKGMDEK*"
     gene            255205..255906
                     /gene="garR"
                     /locus_tag="BSU_02500"
                     /old_locus_tag="BSU02500"
     downshifts      255856
                     /Source="Nicolas_upshifts"
                     /id="D96"
                     /incds=0
                     /nref=1
                     /ntot=35
                     /MaxReadThrough="3.59234"
                     /MaxDrop="2.3923"
                     /score="4.10541728"
                     /energy="-9.5"
                     /TU="U178"
                     /idTUdmin="U178"
                     /TUdmin="-1694"
                     /isTUend="FALSE"
     downshifts      255900
                     /Source="Nicolas_upshifts"
                     /id="D97"
                     /incds=0
                     /nref=1
                     /ntot=82
                     /MaxReadThrough="3.21794"
                     /MaxDrop="2.49226"
                     /score="4.10541728"
                     /energy="-9.5"
                     /TU="U178"
                     /idTUdmin="U178"
                     /TUdmin="-1650"
                     /isTUend="FALSE"
     CDS             255997..257529
                     /gene="garD"
                     /locus_tag="BSU_02510"
                     /old_locus_tag="BSU02510"
                     /EC_number="4.2.1.42"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9772162; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-galactarate dehydratase"
                     /protein_id="NP_388133.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02510"
                     /db_xref="EnsemblGenomes-Tr:CAB12045"
                     /db_xref="GOA:P42240"
                     /db_xref="InterPro:IPR007392"
                     /db_xref="InterPro:IPR013974"
                     /db_xref="InterPro:IPR017654"
                     /db_xref="SubtiList:BG11163"
                     /db_xref="UniProtKB/Swiss-Prot:P42240"
                     /translation="MAMNLRKNQAPLYIKVHEIDNTAIIVNDGGLPKGTVFSCGLVLE
                     EDVPQGHKVALTDLNQGDEIVRYGEVIGFADETIKRGSWIREALVRMPAPPALDDLPL
                     ANRVPQPRPPLEGYTFEGYRNADGSAGTKNILGITTSVQCVVGVLDYAVKRIKEELLP
                     KYPNVDDVVPLHHQYGCGVAINAPDAVIPIRTIQNLAKHPNFGGEVMVIGLGCEKLLP
                     ERIASENDDDILSLQDHRGFAAMIQSILEMAEERLIRLNSRTRVSCPVSDLVIGLQCG
                     GSDAFSGVTANPAVGYAADLLVRAGATVLFSEVTEVRDAIHLLTPRAVSEEVGQSLIK
                     EMKWYDSYLRRGDADRSANPSPGNKKGGLSNVVEKALGSVAKSGTSPISGVLGPGERA
                     KQKGLLFAATPASDFVCGTLQLAAGMNLQVFTTGRGTPYGLAAAPVLKVSTRHSLSEH
                     WADLIDINAGRIATGEASIEDVGWEIFRTILDVASGRKQTWADRWGLHNDLCLFNPAP
                     VT*"
     gene            255997..257529
                     /gene="garD"
                     /locus_tag="BSU_02510"
                     /old_locus_tag="BSU02510"
     promotor_-35    257541..257544
                     /Source="Nicolas_upshift_promotors"
                     /id="U179"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig=1
                     /xcortree=422
                     /SigmaFactorBS="tcctgctccagtgacttgattcatgtttttATAGcggaaaga
                     tggaatATGCTGTAAAATGAAAATCAgcgtataggaaacggaggggttacagcatggc
                     a"
                     /listShort="S95, ycbJ, NA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    257559..257578
                     /Source="Nicolas_upshift_promotors"
                     /id="U179"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig=1
                     /xcortree=422
                     /SigmaFactorBS="tcctgctccagtgacttgattcatgtttttATAGcggaaaga
                     tggaatATGCTGTAAAATGAAAATCAgcgtataggaaacggaggggttacagcatggc
                     a"
                     /listShort="S95, ycbJ, NA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       257571..257805
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_275603_275837"
                     /HighExp="LoTm, Sw, BC, BI, B60, B36, T3.30H, T5.0H,
                     T4.0H, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.50265400000000005"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S95"
     upshifts        257571
                     /Source="Nicolas_upshifts"
                     /id="U179"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig=1
                     /xcortree=422
                     /SigmaFactorBS="tcctgctccagtgacttgattcatgtttttATAGcggaaaga
                     tggaatATGCTGTAAAATGAAAATCAgcgtataggaaacggaggggttacagcatggc
                     a"
                     /listShort="S95, ycbJ, NA"
                     /GFF_Attribute="listLong"
     CDS             257806..258726
                     /gene="ycbJ"
                     /locus_tag="BSU_02520"
                     /old_locus_tag="BSU02520"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12044674; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphotransferase"
                     /protein_id="NP_388134.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02520"
                     /db_xref="EnsemblGenomes-Tr:CAB12046"
                     /db_xref="GOA:P42242"
                     /db_xref="InterPro:IPR002575"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="SubtiList:BG11165"
                     /db_xref="UniProtKB/Swiss-Prot:P42242"
                     /translation="MTNLNEKQLITEIVGLARSQGLTVHSENAQLNETGMDFQVVFAK
                     DDTGMPWVLRKPRRSDVVERASAEGITLAFLRANLTADVPDWRIHTPELIAYPMLKGT
                     PAAGIDLEQKQYVWNMDHQPPSDDFVRTLADILAELHGTDQISAGQSGIEVIRPEDFR
                     QMTADSMVDVKNKLGVSTTLWERWQKWVDDDAYWPGFSSLIHGDLHPPHILIDQNGRV
                     TGLLDWTEAKVADPAKDFVLYQTIFGEKETARLLEYYDQAGGRIWAKMQEHISEMQAA
                     YPVEIAKLALQTQQEEHINMALEALGVTSD*"
     gene            257806..258726
                     /gene="ycbJ"
                     /locus_tag="BSU_02520"
                     /old_locus_tag="BSU02520"
     promotor_-35    258728..258735
                     /Source="Nicolas_upshift_promotors"
                     /id="U180"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig=1
                     /xcortree=572
                     /SigmaFactorBS="gaagcacttggtgtaacatcggattaagAATTGACTtcgttt
                     catgaaccGAGTATTATAAACTCTACAAataatagaacggattaacaatcgtgaggaa
                     g"
                     /listShort="NA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    258750..258769
                     /Source="Nicolas_upshift_promotors"
                     /id="U180"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig=1
                     /xcortree=572
                     /SigmaFactorBS="gaagcacttggtgtaacatcggattaagAATTGACTtcgttt
                     catgaaccGAGTATTATAAACTCTACAAataatagaacggattaacaatcgtgaggaa
                     g"
                     /listShort="NA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        258760
                     /Source="Nicolas_upshifts"
                     /id="U180"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig=1
                     /xcortree=572
                     /SigmaFactorBS="gaagcacttggtgtaacatcggattaagAATTGACTtcgttt
                     catgaaccGAGTATTATAAACTCTACAAataatagaacggattaacaatcgtgaggaa
                     g"
                     /listShort="NA"
                     /GFF_Attribute="listLong"
     misc_RNA        258783..259030
                     /gene="tboW"
                     /locus_tag="BSU_misc_RNA_6"
                     /product="T-box riboswitch specific of tryptophan tRNA
                     ligase"
                     /experiment="publication(s) with functional evidences,
                     PMID:1317842, 9098041, 10706627, 12165569, 12547201"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1317842, 9098041,
                     10706627, 12165569, 12547201; Product type n: RNA"
     gene            258783..259030
                     /gene="tboW"
                     /locus_tag="BSU_misc_RNA_6"
     downshifts      258999
                     /Source="Nicolas_upshifts"
                     /id="D98"
                     /incds=0
                     /nref=225
                     /ntot=264
                     /MaxReadThrough="2.36361"
                     /MaxDrop="6.52913"
                     /score="36.5571172"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U179"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     CDS             259128..259289
                     /gene="rtpA"
                     /locus_tag="BSU_02530"
                     /old_locus_tag="BSU02530"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10706627, 11557884, 12855807, 15099736, 15213402,
                     15743934, 16306262"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10706627, 11557884,
                     12855807, 15099736, 15213402, 15743934, 16306262; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-TRAP regulator"
                     /protein_id="NP_388135.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02530"
                     /db_xref="EnsemblGenomes-Tr:CAB12047"
                     /db_xref="GOA:O31466"
                     /db_xref="InterPro:IPR031538"
                     /db_xref="InterPro:IPR036410"
                     /db_xref="PDB:2BX9"
                     /db_xref="PDB:2KO8"
                     /db_xref="PDB:2ZP8"
                     /db_xref="PDB:2ZP9"
                     /db_xref="SubtiList:BG12776"
                     /db_xref="UniProtKB/Swiss-Prot:O31466"
                     /translation="MVIATDDLEVACPKCERAGEIEGTPCPACSGKGVILTAQGYTLL
                     DFIQKHLNK*"
     gene            259128..259289
                     /gene="rtpA"
                     /locus_tag="BSU_02530"
                     /old_locus_tag="BSU02530"
     promotor_no_box 259206..259306
                     /Source="Nicolas_upshift_promotors"
                     /id="U181"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.544455544455544"
                     /psig="0.010989010989011"
                     /xcortree=1479
                     /SigmaFactorBS="ccggcctgcagcggaaaaggtgttattctgactgctcaagga
                     tatacgcttctcgattttatccaaaagcatttgaataagtaaaggagaaaagctgagc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        259266
                     /Source="Nicolas_upshifts"
                     /id="U181"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.544455544455544"
                     /psig="0.010989010989011"
                     /xcortree=1479
                     /SigmaFactorBS="ccggcctgcagcggaaaaggtgttattctgactgctcaagga
                     tatacgcttctcgattttatccaaaagcatttgaataagtaaaggagaaaagctgagc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             259310..260248
                     /gene="ycbK"
                     /locus_tag="BSU_02540"
                     /old_locus_tag="BSU02540"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10706627, 15063849,
                     15849754, 16850406, 16879415, 17114263; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative tryptophan or indole exporter"
                     /protein_id="NP_388136.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02540"
                     /db_xref="EnsemblGenomes-Tr:CAB12048"
                     /db_xref="GOA:P42243"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG11166"
                     /db_xref="UniProtKB/Swiss-Prot:P42243"
                     /translation="MRAEEQSKIREAAAGTIFLLIGTVCFASKSIWIKWAYQMGAEPD
                     AVLLYRQLLAVPLFWLIFLIYRPPMPDGKKKGDLWKACGAGVFCFFLSPLLDFIGLNH
                     VSAMVERILLMSYPLFVFGFTACRDRKMSSIQDLFAVLAVMFGLFLALGGWNAELFQA
                     NMIGAVFILLSSAVYAGYLVLSGHLVHQIGGIRLNAYGMTAAGAAMMLYTGIKSAAGM
                     NTPMAAYPLSMYGLFAVIAVVTTVIPFVLMLEGIKRIGAQRAAAISMAGPILTIFYGA
                     LFLGERLGLIQVIGCGGVFFVITGMEYRKLKTGKKE*"
     gene            259310..260248
                     /gene="ycbK"
                     /locus_tag="BSU_02540"
                     /old_locus_tag="BSU02540"
     downshifts      259354
                     /Source="Nicolas_upshifts"
                     /id="D99"
                     /incds=0
                     /nref=1
                     /ntot=7
                     /MaxReadThrough="3.05417"
                     /MaxDrop="3.72787"
                     /score="0.773303272"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U181"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_feature    260271..260290
                     /Source="Nicolas_upshift_promotors"
                     /id="U182"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.699300699300699"
                     /psig="0.998001998001998"
                     /xcortree=2265
                     /SigmaFactorBS="tacaggaagctgaaaacaggaaaaaaagaataatttttataa
                     aacacacacgtttTTCAATTACAATAAGTGTAAttacgtgtgtgttttttgattttgt
                     a"
                     /listShort="S96, ycbL, ycbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       260276..260344
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_278308_278376"
                     /HighExp="C90, dia5, Lbtran, Lbexp, LBGexp, SMM, dia0,
                     dia15, BMM, T-3.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S96"
     upshifts        260276
                     /Source="Nicolas_upshifts"
                     /id="U182"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.699300699300699"
                     /psig="0.998001998001998"
                     /xcortree=2265
                     /SigmaFactorBS="tacaggaagctgaaaacaggaaaaaaagaataatttttataa
                     aacacacacgtttTTCAATTACAATAAGTGTAAttacgtgtgtgttttttgattttgt
                     a"
                     /listShort="S96, ycbL, ycbM"
                     /GFF_Attribute="listLong"
     CDS             260345..261025
                     /gene="ycbL"
                     /locus_tag="BSU_02550"
                     /old_locus_tag="BSU02550"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YcbM]"
                     /protein_id="NP_388137.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02550"
                     /db_xref="EnsemblGenomes-Tr:CAB12049"
                     /db_xref="GOA:P42244"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR001867"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG11167"
                     /db_xref="UniProtKB/Swiss-Prot:P42244"
                     /translation="MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDL
                     VLLDIMLPKLNGMDFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMI
                     ELTARVKAAIRRATQYSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLL
                     CLFASNPKKVFTKEQIYRSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWG
                     IGYKLGEF*"
     gene            260345..261025
                     /gene="ycbL"
                     /locus_tag="BSU_02550"
                     /old_locus_tag="BSU02550"
     CDS             261027..261962
                     /gene="ycbM"
                     /locus_tag="BSU_02560"
                     /old_locus_tag="BSU02560"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295; Product type
                     rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YcbL]"
                     /protein_id="NP_388138.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02560"
                     /db_xref="EnsemblGenomes-Tr:CAB12050"
                     /db_xref="GOA:P42245"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG11168"
                     /db_xref="UniProtKB/Swiss-Prot:P42245"
                     /translation="MTVLWVAAVIALACLNVIQFIMKKKRDGNLAYTADQLSYMLSRD
                     SAGQILLPTDDHALKDLLVNINLIVENRQQISAQFAKTEQSMKRMLTNMSHDLKTPLT
                     VILGYIEAIQSDPNMPDEERERLLGKLRQKTNELIQMINSFFDLAKLESEDKEIPITK
                     VHMNDICKRNILHYYDAVQSKGFQAAIDIPDTPVYAQANEEALDRILQNLLSNAIQYG
                     AAGKLIGLTLSYDERNIAITVWDRGKGISETDQQRVFERLYTLEESRNKAFQGSGLGL
                     TITKRLTEKMGGIISVQSKPYERTAFTITLKRMTY*"
     gene            261027..261962
                     /gene="ycbM"
                     /locus_tag="BSU_02560"
                     /old_locus_tag="BSU02560"
     CDS             262054..262977
                     /gene="ycbN"
                     /locus_tag="BSU_02570"
                     /old_locus_tag="BSU02570"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12486040; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC efflux transporter (ATP-binding
                     protein)"
                     /protein_id="NP_388139.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02570"
                     /db_xref="EnsemblGenomes-Tr:CAB12051"
                     /db_xref="GOA:P42246"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11169"
                     /db_xref="UniProtKB/Swiss-Prot:P42246"
                     /translation="MTYIVQTNGLTKTYQGKEVVSNVSMHIKKGEIYGFLGPNGAGKT
                     TIMKMLTSLVKPTSGEIIILGNKFTHTSYEVLGNIGSMIEYPIFYENLTAEENLDLHC
                     EYMGYHNKKAIQEVLDMVNLKQIDKKPVKTFSLGMKQRLGIARAILTKPDLLILDEPV
                     NGLDPLGIKKIRQLFQVLSKEYGMTLLISSHLLGEIEQIADTIGVIRDGRLLEEVSME
                     DVRGQNTEYIELVTPNQTRACFVLEKELQLTNFKILNEKTIRIYEAEASQAAISKALI
                     LNDVDIESMNKKYTSLEDYFIKLINGNSISA*"
     gene            262054..262977
                     /gene="ycbN"
                     /locus_tag="BSU_02570"
                     /old_locus_tag="BSU02570"
     S_feature       complement(262524..263708)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_280556_281740_c"
                     /HighExp="Etha, Sw, Gly, B36, LoTm, B60, GM 150, Salt,
                     C30, ferm"
                     /AntisenseName="ycbO"
                     /AntisenseCor="-0.38911425676406203"
                     /AntisenseRegPval="-10.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S97"
     CDS             262996..263682
                     /gene="ycbO"
                     /locus_tag="BSU_02580"
                     /old_locus_tag="BSU02580"
                     /function="16.1: Circulate"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Na+-driven exporter"
                     /protein_id="NP_388140.3"
                     /db_xref="EnsemblGenomes-Gn:BSU02580"
                     /db_xref="EnsemblGenomes-Tr:CAB12052"
                     /db_xref="GOA:P42247"
                     /db_xref="InterPro:IPR032688"
                     /db_xref="SubtiList:BG11170"
                     /db_xref="UniProtKB/Swiss-Prot:P42247"
                     /translation="MNLIRIELRKMKMGWYIRGALIANVIIMGFMWLISYSEKADGGV
                     SFQSTDEAFLIIGTFVRAVFIVFGAVLIVKLVISEYKNKTILVMFTYPISRKKLLTAK
                     LMIAGGLTFITILLSNILIAAGFFWLNSICHFIPGELTSEIISQQAVKMAVFAFGAAG
                     TSLVPIFFGMRRHSVPATIISSVVIVMLISSTSPGFSISSVVYIPLSLAAFGLFFSYM
                     AIRNADKQDA*"
     gene            262996..263682
                     /gene="ycbO"
                     /locus_tag="BSU_02580"
                     /old_locus_tag="BSU02580"
     CDS             complement(263643..263777)
                     /locus_tag="BSU_02585"
                     /old_locus_tag="BSU02585"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513940.1"
                     /translation="MARSIILKQEQTHNGKAGADSIGLLYILGAFVYASCLSAFLIAM
                     *"
     gene            complement(263643..263777)
                     /locus_tag="BSU_02585"
                     /old_locus_tag="BSU02585"
     downshifts      263677
                     /Source="Nicolas_upshifts"
                     /id="D100"
                     /incds=0
                     /nref=8
                     /ntot=120
                     /MaxReadThrough="1.13131"
                     /MaxDrop="3.44039"
                     /score="18.1873505"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U184"
                     /TUdmin="-1166"
                     /isTUend="FALSE"
     CDS             complement(263737..264123)
                     /gene="ycbP"
                     /locus_tag="BSU_02590"
                     /old_locus_tag="BSU02590"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22582280; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative inner integral membrane protein"
                     /protein_id="NP_388141.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02590"
                     /db_xref="EnsemblGenomes-Tr:CAB12053"
                     /db_xref="GOA:P42248"
                     /db_xref="InterPro:IPR019649"
                     /db_xref="SubtiList:BG11171"
                     /db_xref="UniProtKB/Swiss-Prot:P42248"
                     /translation="MTHVKALAIKGIMTIIVLYLVLGLGFGFTFGDTLLMTIVLGVIS
                     YLLGDLYVLPKWNNMIATLADFGLAFLVIWLMGMPLSMGMTGGEVALAALFGAIVMAI
                     GEYCFHFYMMSKEIGKKHYLETRTDS*"
     gene            complement(263737..264123)
                     /gene="ycbP"
                     /locus_tag="BSU_02590"
                     /old_locus_tag="BSU02590"
     downshifts      complement(263753)
                     /Source="Nicolas_upshifts"
                     /id="D101"
                     /incds=0
                     /nref=148
                     /ntot=217
                     /MaxReadThrough="6.64196"
                     /MaxDrop="7.40353"
                     /score="13.8182557"
                     /energy="-15.6"
                     /TU="U183"
                     /idTUdmin="U185"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(264149..264167)
                     /Source="Nicolas_upshift_promotors"
                     /id="U183"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=164
                     /SigmaFactorBS="ctctccccagcagatttgcacccgcctccgaaaagaaataaG
                     GTTTAActttttacatttgAGGAATTATACATAACAAAtcaaatgacaaaaggaggaa
                     t"
                     /listShort="ycbP, S97"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(264168)
                     /Source="Nicolas_upshifts"
                     /id="U183"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=164
                     /SigmaFactorBS="ctctccccagcagatttgcacccgcctccgaaaagaaataaG
                     GTTTAActttttacatttgAGGAATTATACATAACAAAtcaaatgacaaaaggaggaa
                     t"
                     /listShort="ycbP, S97"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(264181..264187)
                     /Source="Nicolas_upshift_promotors"
                     /id="U183"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=164
                     /SigmaFactorBS="ctctccccagcagatttgcacccgcctccgaaaagaaataaG
                     GTTTAActttttacatttgAGGAATTATACATAACAAAtcaaatgacaaaaggaggaa
                     t"
                     /listShort="ycbP, S97"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(264201..265199)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_282233_283231_c"
                     /HighExp="GM 150, T0.30H, C30, T1.30H, T1.0H, T-0.40H,
                     T-3.40H, T2.0H, T2.30H, T-4.40H"
                     /AntisenseName="cwlJ"
                     /AntisenseCor="0.11463160303596701"
                     /AntisenseRegPval="-1.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.975"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S98"
     downshifts      complement(264244)
                     /Source="Nicolas_upshifts"
                     /id="D102"
                     /incds=0
                     /nref=3
                     /ntot=10
                     /MaxReadThrough="5.23914"
                     /MaxDrop="3.14515"
                     /score="13.8182557"
                     /energy="-15.6"
                     /TU="U185,U187"
                     /idTUdmin="U185"
                     /TUdmin="-491"
                     /isTUend="FALSE"
     promotor_-35    264380..264385
                     /Source="Nicolas_upshift_promotors"
                     /id="U184"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.986013986013986"
                     /psig="0.986013986013986"
                     /xcortree=1108
                     /SigmaFactorBS="gtttttagatgaataaatttaaaaacttctcctgtccctccG
                     TCATCacttctgaagtaatgAAATATGATGAAAAGAGATcaaggggaggtgacgtgat
                     g"
                     /listShort="cwlJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        264399
                     /Source="Nicolas_upshifts"
                     /id="U184"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.986013986013986"
                     /psig="0.986013986013986"
                     /xcortree=1108
                     /SigmaFactorBS="gtttttagatgaataaatttaaaaacttctcctgtccctccG
                     TCATCacttctgaagtaatgAAATATGATGAAAAGAGATcaaggggaggtgacgtgat
                     g"
                     /listShort="cwlJ"
                     /GFF_Attribute="listLong"
     promotor_-10    264401..264419
                     /Source="Nicolas_upshift_promotors"
                     /id="U184"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.986013986013986"
                     /psig="0.986013986013986"
                     /xcortree=1108
                     /SigmaFactorBS="gtttttagatgaataaatttaaaaacttctcctgtccctccG
                     TCATCacttctgaagtaatgAAATATGATGAAAAGAGATcaaggggaggtgacgtgat
                     g"
                     /listShort="cwlJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(264413)
                     /Source="Nicolas_upshifts"
                     /id="U185"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=680
                     /SigmaFactorBS="aatcgacatccgcactcgttgctctcacgaccGCCATcacgt
                     caCCTCCCCTTGATCTCttttcatcatatttcattacttcagaagtgatgacggaggg
                     a"
                     /listShort="ycbP"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(264415..264429)
                     /Source="Nicolas_upshift_promotors"
                     /id="U185"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=680
                     /SigmaFactorBS="aatcgacatccgcactcgttgctctcacgaccGCCATcacgt
                     caCCTCCCCTTGATCTCttttcatcatatttcattacttcagaagtgatgacggaggg
                     a"
                     /listShort="ycbP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(264435)
                     /Source="Nicolas_upshifts"
                     /id="D103"
                     /incds=0
                     /nref=2
                     /ntot=5
                     /MaxReadThrough="5.64474"
                     /MaxDrop="3.76775"
                     /score="13.8182557"
                     /energy="-15.6"
                     /TU="U187"
                     /idTUdmin="U185"
                     /TUdmin="-682"
                     /isTUend="FALSE"
     promotor_-35    complement(264437..264441)
                     /Source="Nicolas_upshift_promotors"
                     /id="U185"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=680
                     /SigmaFactorBS="aatcgacatccgcactcgttgctctcacgaccGCCATcacgt
                     caCCTCCCCTTGATCTCttttcatcatatttcattacttcagaagtgatgacggaggg
                     a"
                     /listShort="ycbP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             264437..264865
                     /gene="cwlJ"
                     /locus_tag="BSU_02600"
                     /old_locus_tag="BSU02600"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:9515903, 11466292, 11807087, 12177332, 16936016,
                     26190134, 28333204"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9515903, 11466292,
                     11807087, 12177332, 16936016, 26190134, 28333204; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="spore cortex cell wall hydrolase"
                     /protein_id="NP_388142.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02600"
                     /db_xref="EnsemblGenomes-Tr:CAB12054"
                     /db_xref="GOA:P42249"
                     /db_xref="InterPro:IPR011105"
                     /db_xref="SubtiList:BG11172"
                     /db_xref="UniProtKB/Swiss-Prot:P42249"
                     /translation="MAVVRATSADVDLMARLLRAEAEGEGKQGMLLVGNVGINRLRAN
                     CSDFKGLRTIRQMIYQPHAFEAVTHGYFYQRARDSERALARRSINGERRWPAKFSLWY
                     FRPQGDCPAQWYNQPFVARFKSHCFYQPTAETCENVYNTF*"
     gene            264437..264865
                     /gene="cwlJ"
                     /locus_tag="BSU_02600"
                     /old_locus_tag="BSU02600"
     downshifts      264844
                     /Source="Nicolas_upshifts"
                     /id="D104"
                     /incds=0
                     /nref=44
                     /ntot=63
                     /MaxReadThrough="2.30044"
                     /MaxDrop="5.89045"
                     /score="18.1873505"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U184"
                     /TUdmin=1
                     /isTUend="TRUE"
     promotor_-35    264910..264916
                     /Source="Nicolas_upshift_promotors"
                     /id="U186"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.535464535464535"
                     /psig="0.973026973026973"
                     /xcortree=1784
                     /SigmaFactorBS="ggacaccgttcaaattgaacggtgtttttctttgaaaagATG
                     CAATgcaaaatattccTGTGAGATAATCAAAGAAAAaagagctgacggagatgacaga
                     a"
                     /listShort="ycbR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    264929..264948
                     /Source="Nicolas_upshift_promotors"
                     /id="U186"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.535464535464535"
                     /psig="0.973026973026973"
                     /xcortree=1784
                     /SigmaFactorBS="ggacaccgttcaaattgaacggtgtttttctttgaaaagATG
                     CAATgcaaaatattccTGTGAGATAATCAAAGAAAAaagagctgacggagatgacaga
                     a"
                     /listShort="ycbR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        264931
                     /Source="Nicolas_upshifts"
                     /id="U186"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.535464535464535"
                     /psig="0.973026973026973"
                     /xcortree=1784
                     /SigmaFactorBS="ggacaccgttcaaattgaacggtgtttttctttgaaaagATG
                     CAATgcaaaatattccTGTGAGATAATCAAAGAAAAaagagctgacggagatgacaga
                     a"
                     /listShort="ycbR"
                     /GFF_Attribute="listLong"
     CDS             264971..265702
                     /gene="ycbR"
                     /locus_tag="BSU_02610"
                     /old_locus_tag="BSU02610"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388143.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02610"
                     /db_xref="EnsemblGenomes-Tr:CAB12055"
                     /db_xref="InterPro:IPR002035"
                     /db_xref="InterPro:IPR019303"
                     /db_xref="InterPro:IPR036465"
                     /db_xref="SubtiList:BG11173"
                     /db_xref="UniProtKB/Swiss-Prot:P42250"
                     /translation="MATIDLQKKSVKIVLEKKQLTKVTARVGLVLDITGSMRPLYKNG
                     TVQNVVERILAVADQFDDNGLLDVWVYDNEFSRLKPVSEKDFSGYVDREILNNDRLHK
                     FGRNDEPPVMKDVLRKYVTEEPSSYPAFIVFINDGGCKKSIKPIIEASSDKPVFWQFV
                     GIGNGNFDFLNKLDTLEGRVIDNTNFLHIEEIDRISDDELYDALLAEFPFWLKEAKEK
                     GIVREQEPPAEKPKKKGFFSRLFSK*"
     gene            264971..265702
                     /gene="ycbR"
                     /locus_tag="BSU_02610"
                     /old_locus_tag="BSU02610"
     promotor_-10    complement(265173..265192)
                     /Source="Nicolas_upshift_promotors"
                     /id="U187"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig="0.975024975024975"
                     /xcortree=2967
                     /SigmaFactorBS="tatttaaaatttcacgatcgacatagcccgaaaaatcctttt
                     ctgaAACTGGCTttaatcgggaaaaTTCATTATCATACACCCATAcatccagcaaacc
                     g"
                     /listShort="S98, ycbP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(265199)
                     /Source="Nicolas_upshifts"
                     /id="U187"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig="0.975024975024975"
                     /xcortree=2967
                     /SigmaFactorBS="tatttaaaatttcacgatcgacatagcccgaaaaatcctttt
                     ctgaAACTGGCTttaatcgggaaaaTTCATTATCATACACCCATAcatccagcaaacc
                     g"
                     /listShort="S98, ycbP"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(265206..265213)
                     /Source="Nicolas_upshift_promotors"
                     /id="U187"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig="0.975024975024975"
                     /xcortree=2967
                     /SigmaFactorBS="tatttaaaatttcacgatcgacatagcccgaaaaatcctttt
                     ctgaAACTGGCTttaatcgggaaaaTTCATTATCATACACCCATAcatccagcaaacc
                     g"
                     /listShort="S98, ycbP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      265620
                     /Source="Nicolas_upshifts"
                     /id="D105"
                     /incds=1
                     /nref=9
                     /ntot=148
                     /MaxReadThrough="1.70712"
                     /MaxDrop="3.61288"
                     /score="25.6672471"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U186"
                     /TUdmin=7
                     /isTUend="TRUE"
     CDS             265784..265960
                     /gene="yczK"
                     /locus_tag="BSU_02619"
                     /old_locus_tag="BSU02619"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="YP_003097673.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02619"
                     /db_xref="EnsemblGenomes-Tr:CAX52543"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3T2"
                     /translation="MGGLQTTGYAENASFSQLSACFSSRLVREDLFLMFSAYNQFTLL
                     HSRLTMISYNGDDQ*"
     gene            265784..265960
                     /gene="yczK"
                     /locus_tag="BSU_02619"
                     /old_locus_tag="BSU02619"
     promotor_-35    265912..265918
                     /Source="Nicolas_upshift_promotors"
                     /id="U188"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.942057942057942"
                     /psig="0.056943056943057"
                     /xcortree=6
                     /SigmaFactorBS="gtttttaatgttcagcgcttacaatcagttcacactTCTTCA
                     CagtcgtTTAACAATGATTTCCTATaatggagacgatcaatgaggagagaggggatct
                     t"
                     /listShort="phoD, tatAD, S99, tatCD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    265925..265942
                     /Source="Nicolas_upshift_promotors"
                     /id="U188"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.942057942057942"
                     /psig="0.056943056943057"
                     /xcortree=6
                     /SigmaFactorBS="gtttttaatgttcagcgcttacaatcagttcacactTCTTCA
                     CagtcgtTTAACAATGATTTCCTATaatggagacgatcaatgaggagagaggggatct
                     t"
                     /listShort="phoD, tatAD, S99, tatCD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        265936
                     /Source="Nicolas_upshifts"
                     /id="U188"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.942057942057942"
                     /psig="0.056943056943057"
                     /xcortree=6
                     /SigmaFactorBS="gtttttaatgttcagcgcttacaatcagttcacactTCTTCA
                     CagtcgtTTAACAATGATTTCCTATaatggagacgatcaatgaggagagaggggatct
                     t"
                     /listShort="phoD, tatAD, S99, tatCD"
                     /GFF_Attribute="listLong"
     CDS             265979..267730
                     /gene="phoD"
                     /locus_tag="BSU_02620"
                     /old_locus_tag="BSU02620"
                     /EC_number="3.1.4.46"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11719524, 12867413, 16698798, 19395490, 19616508,
                     21479178, 27780866"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11719524, 12867413,
                     16698798, 19395490, 19616508, 21479178, 27780866; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted phosphodiesterase (endo-hydrolysis at
                     non-specific sites throughout the cell wall teichoic acid
                     polymer)"
                     /protein_id="NP_388144.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02620"
                     /db_xref="EnsemblGenomes-Tr:CAB12056"
                     /db_xref="GOA:P42251"
                     /db_xref="InterPro:IPR008963"
                     /db_xref="InterPro:IPR018946"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="InterPro:IPR032093"
                     /db_xref="PDB:2YEQ"
                     /db_xref="SubtiList:BG11174"
                     /db_xref="UniProtKB/Swiss-Prot:P42251"
                     /translation="MAYDSRFDEWVQKLKEESFQNNTFDRRKFIQGAGKIAGLSLGLT
                     IAQSVGAFEVNAAPNFSSYPFTLGVASGDPLSDSVVLWTRLAPDPLNGGGMPKQAVPV
                     KWEVAKDEHFRKIVRKGTEMAKPSLAHSVHVEADGLEPNKVYYYRFKTGHELSPVGKT
                     KTLPAPGANVPQMTFAFASCQQYEHGYYTAYKHMAKEKLDLVFHLGDYIYEYGPNEYV
                     SKTGNVRTHNSAEIITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENNYANK
                     IPEKGQSVEAFVLRRAAAYQAYYEHMPLRISSLPNGPDMQLYRHFTYGNLASFNVLDT
                     RQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNNLGSSTAHWNVLAQQIFFAK
                     WNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVLTGDVHASWASNLHVDFE
                     KTSSKIFGAEFVGTSITSGGNGADKRADTDQILKENPHIQFFNDYRGYVRCTVTPHQW
                     KADYRVMPFVTEPGAAISTRASFVYQKDQTGLRKVSSTTIQGGVKQSDEVEEDRFFSH
                     NKAHEKQMIKKRAKITN*"
     gene            265979..267730
                     /gene="phoD"
                     /locus_tag="BSU_02620"
                     /old_locus_tag="BSU02620"
     promotor_-10    complement(266033..266048)
                     /Source="Nicolas_upshift_promotors"
                     /id="U189"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.875124875124875"
                     /psig="0.875124875124875"
                     /xcortree=1703
                     /SigmaFactorBS="gagaaagtcctgcaatcttccccgctcctTGAATAAATTtgc
                     ggcggtcaaACGTATTGTTTTGAAAgctttcctctttcagtttctgtacccattcatc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(266039)
                     /Source="Nicolas_upshifts"
                     /id="U189"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.875124875124875"
                     /psig="0.875124875124875"
                     /xcortree=1703
                     /SigmaFactorBS="gagaaagtcctgcaatcttccccgctcctTGAATAAATTtgc
                     ggcggtcaaACGTATTGTTTTGAAAgctttcctctttcagtttctgtacccattcatc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(266061..266070)
                     /Source="Nicolas_upshift_promotors"
                     /id="U189"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.875124875124875"
                     /psig="0.875124875124875"
                     /xcortree=1703
                     /SigmaFactorBS="gagaaagtcctgcaatcttccccgctcctTGAATAAATTtgc
                     ggcggtcaaACGTATTGTTTTGAAAgctttcctctttcagtttctgtacccattcatc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             267743..267955
                     /gene="tatAD"
                     /locus_tag="BSU_02630"
                     /old_locus_tag="BSU02630"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12867413, 15554971, 16678787, 19049517, 21479530,
                     27984091"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12867413, 15554971,
                     16678787, 19049517, 21479530, 27984091; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the twin-arginine pre-protein
                     translocation pathway"
                     /protein_id="NP_388145.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02630"
                     /db_xref="EnsemblGenomes-Tr:CAB12057"
                     /db_xref="GOA:O31467"
                     /db_xref="InterPro:IPR003369"
                     /db_xref="InterPro:IPR003998"
                     /db_xref="InterPro:IPR006312"
                     /db_xref="PDB:2L16"
                     /db_xref="SubtiList:BG12777"
                     /db_xref="UniProtKB/Swiss-Prot:O31467"
                     /translation="MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSAT
                     KSLVSGDEKEEKSAELTAVKQDKNAG*"
     gene            267743..267955
                     /gene="tatAD"
                     /locus_tag="BSU_02630"
                     /old_locus_tag="BSU02630"
     S_feature       267956..268015
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_285988_286047"
                     /HighExp="LPhT, BI, Paraq, C90, H2O2, M40t90, C30, M0t90,
                     GM 60, GM 120"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.0569"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S99"
     CDS             268016..268744
                     /gene="tatCD"
                     /locus_tag="BSU_02640"
                     /old_locus_tag="BSU02640"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:16698798, 19049517, 27984091"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16698798, 19049517,
                     27984091; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the twin-arginine pre-protein
                     translocation pathway"
                     /protein_id="NP_388146.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02640"
                     /db_xref="EnsemblGenomes-Tr:CAB12058"
                     /db_xref="GOA:P42252"
                     /db_xref="InterPro:IPR002033"
                     /db_xref="InterPro:IPR019820"
                     /db_xref="SubtiList:BG11175"
                     /db_xref="UniProtKB/Swiss-Prot:P42252"
                     /translation="MDKKETHLIGHLEELRRRIIVTLAAFFLFLITAFLFVQDIYDWL
                     IRDLDGKLAVLGPSEILWVYMMLSGICAIAASIPVAAYQLWRFVAPALTKTERKVTLM
                     YIPGLFALFLAGISFGYFVLFPIVLSFLTHLSSGHFETMFTADRYFRFMVNLSLPFGF
                     LFEMPLVVMFLTRLGILNPYRLAKARKLSYFLLIVVSILITPPDFISDFLVMIPLLVL
                     FEVSVTLSAFVYKKRMREETAAAA*"
     gene            268016..268744
                     /gene="tatCD"
                     /locus_tag="BSU_02640"
                     /old_locus_tag="BSU02640"
     downshifts      complement(268024)
                     /Source="Nicolas_upshifts"
                     /id="D106"
                     /incds=0
                     /nref=4
                     /ntot=146
                     /MaxReadThrough="1.2763"
                     /MaxDrop="3.13944"
                     /score="-9.00478071"
                     /energy="-8.5"
                     /TU="NA"
                     /idTUdmin="U190"
                     /TUdmin="-6"
                     /isTUend="TRUE"
     CDS             complement(268741..269388)
                     /gene="pcp"
                     /locus_tag="BSU_02650"
                     /old_locus_tag="BSU02650"
                     /EC_number="3.4.19.3"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1362573, 28830929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1362573, 28830929;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrrolidone-carboxylate (pyroglutamate)
                     peptidase"
                     /protein_id="NP_388147.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02650"
                     /db_xref="EnsemblGenomes-Tr:CAB12059"
                     /db_xref="GOA:P28618"
                     /db_xref="InterPro:IPR000816"
                     /db_xref="InterPro:IPR016125"
                     /db_xref="InterPro:IPR029762"
                     /db_xref="InterPro:IPR033693"
                     /db_xref="InterPro:IPR033694"
                     /db_xref="InterPro:IPR036440"
                     /db_xref="SubtiList:BG10873"
                     /db_xref="UniProtKB/Swiss-Prot:P28618"
                     /translation="MRKKVLITGFDPFDKETVNPSWEAAKRLNGFETEEAIITAEQIP
                     TVFRSALDTLRQAIQKHQPDIVICVGQAGGRMQITPERVAINLADARIPDNEGHQPID
                     EEISPDGPAAYWTRLPVKRMTAKMKEHGIPAAVSYTAGTFVCNYLFYGLMDHISRTSP
                     HIRGGFIHIPYIPQQTIDKTAPSLSLDTIVRALRIAAVTAAQYDEDVKSPGGTLH*"
     gene            complement(268741..269388)
                     /gene="pcp"
                     /locus_tag="BSU_02650"
                     /old_locus_tag="BSU02650"
     promotor_-10    complement(269403..269422)
                     /Source="Nicolas_upshift_promotors"
                     /id="U190"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.487512487512487"
                     /psig="0.957042957042957"
                     /xcortree=559
                     /SigmaFactorBS="aaatgctccattatgattcactcctttacattatttTGATGa
                     aaaacccataaatAAACAATAGAATAAAAGAAAaaggagatgggagaatgagaaaaaa
                     a"
                     /listShort="pcp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    269416..269422
                     /Source="Nicolas_upshift_promotors"
                     /id="U191"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.988011988011988"
                     /xcortree=2718
                     /SigmaFactorBS="tttttctcattctcccatctcctttttcttttattctATTGT
                     TTatttatgggtttttCATCAAAATAATGTAAAGGAgtgaatcataatggagcatttg
                     c"
                     /listShort="ycbU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(269417)
                     /Source="Nicolas_upshifts"
                     /id="U190"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.487512487512487"
                     /psig="0.957042957042957"
                     /xcortree=559
                     /SigmaFactorBS="aaatgctccattatgattcactcctttacattatttTGATGa
                     aaaacccataaatAAACAATAGAATAAAAGAAAaaggagatgggagaatgagaaaaaa
                     a"
                     /listShort="pcp"
                     /GFF_Attribute="listLong"
     promotor_-10    269437..269456
                     /Source="Nicolas_upshift_promotors"
                     /id="U191"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.988011988011988"
                     /xcortree=2718
                     /SigmaFactorBS="tttttctcattctcccatctcctttttcttttattctATTGT
                     TTatttatgggtttttCATCAAAATAATGTAAAGGAgtgaatcataatggagcatttg
                     c"
                     /listShort="ycbU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(269437..269441)
                     /Source="Nicolas_upshift_promotors"
                     /id="U190"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.487512487512487"
                     /psig="0.957042957042957"
                     /xcortree=559
                     /SigmaFactorBS="aaatgctccattatgattcactcctttacattatttTGATGa
                     aaaacccataaatAAACAATAGAATAAAAGAAAaaggagatgggagaatgagaaaaaa
                     a"
                     /listShort="pcp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        269439
                     /Source="Nicolas_upshifts"
                     /id="U191"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig="0.988011988011988"
                     /xcortree=2718
                     /SigmaFactorBS="tttttctcattctcccatctcctttttcttttattctATTGT
                     TTatttatgggtttttCATCAAAATAATGTAAAGGAgtgaatcataatggagcatttg
                     c"
                     /listShort="ycbU"
                     /GFF_Attribute="listLong"
     CDS             269467..270579
                     /gene="ycbU"
                     /locus_tag="BSU_02660"
                     /old_locus_tag="BSU02660"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lyase (PLP-dependent)"
                     /protein_id="NP_388148.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02660"
                     /db_xref="EnsemblGenomes-Tr:CAB12060"
                     /db_xref="GOA:P42253"
                     /db_xref="InterPro:IPR000192"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR020578"
                     /db_xref="SubtiList:BG11176"
                     /db_xref="UniProtKB/Swiss-Prot:P42253"
                     /translation="MEHLPEQYRQLFPTLQTHTMLASCSQSALAEPVSRAIQDYYDSL
                     LYKGTNWKEAIEKTEFARNEFAKLIGAEPDEVAIVPSVSDALVSVASSLTAFGKKHVV
                     YTDMDFPAVPHVWQAHSDYTVSVIPSIDGVLPLEQYETHISDETVLTCVPHVHYRDGY
                     VQDIKAIAEISQRKGSLLFVDAYQSAGHIPIDVKEWGVDMLAAGTRKYLLGIPGVAFL
                     YVRKELADALKPKASAWFGRESGFDGAYAKVARRFQTGTPAFISVYAAAAALSLLNHI
                     GVSHIRDHVKTICADAVQYAAEKGLQLAAAQGGIQPGMVAIRDERASETAGLLKKKKV
                     ICAPRENVIRLAPHFYNTKEEMRHAIDEIAAKTIHK*"
     gene            269467..270579
                     /gene="ycbU"
                     /locus_tag="BSU_02660"
                     /old_locus_tag="BSU02660"
     upshifts        complement(269813)
                     /Source="Nicolas_upshifts"
                     /id="U192"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.999000999001"
                     /xcortree=2851
                     /SigmaFactorBS="tcaagcggcagcacgccgTCTATtgatggaatgacggaTACG
                     GTATAATCGGAGTGTGcctgccaaacatgaggcaccgccggaaaatccatatctgtat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(269816..269835)
                     /Source="Nicolas_upshift_promotors"
                     /id="U192"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.999000999001"
                     /xcortree=2851
                     /SigmaFactorBS="tcaagcggcagcacgccgTCTATtgatggaatgacggaTACG
                     GTATAATCGGAGTGTGcctgccaaacatgaggcaccgccggaaaatccatatctgtat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(269851..269855)
                     /Source="Nicolas_upshift_promotors"
                     /id="U192"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.999000999001"
                     /xcortree=2851
                     /SigmaFactorBS="tcaagcggcagcacgccgTCTATtgatggaatgacggaTACG
                     GTATAATCGGAGTGTGcctgccaaacatgaggcaccgccggaaaatccatatctgtat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      270573
                     /Source="Nicolas_upshifts"
                     /id="D107"
                     /incds=0
                     /nref=45
                     /ntot=226
                     /MaxReadThrough="1.10091"
                     /MaxDrop="4.52742"
                     /score="6.75687898"
                     /energy="-14"
                     /TU="NA"
                     /idTUdmin="U191"
                     /TUdmin=814
                     /isTUend="FALSE"
     CDS             complement(270621..272060)
                     /gene="lmrB"
                     /locus_tag="BSU_02670"
                     /old_locus_tag="BSU02670"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15317768, 15849754, 16850406, 17483215"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15317768, 15849754,
                     16850406, 17483215; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="flavonoid efflux transporter; drug-export
                     protein"
                     /protein_id="NP_388149.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02670"
                     /db_xref="EnsemblGenomes-Tr:CAB12061"
                     /db_xref="GOA:O35018"
                     /db_xref="InterPro:IPR004638"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12613"
                     /db_xref="UniProtKB/Swiss-Prot:O35018"
                     /translation="MILETTAKASQQYKVMPIMISLLLAGFIGMFSETALNIALTDLM
                     KELNITAATVQWLTTGYLLVLGILVPVSGLLLQWFTTRQLFTVSLIFSILGTFIAALA
                     PSFSFLLAARIVQALGTGLLLPLMFNTILVIFPPHKRGAAMGTIGLVIMFAPAIGPTF
                     SGLVLEHLNWHWIFWISLPFLVLALVFGIAYMQNVSETTKPKIDVLSIILSTIGFGGI
                     VFGFSNAGEGSGGWSSPTVIVSLIVGVVGLILFSIRQLTMKQPMMNLRAFKYPMFILG
                     VIMVFICMMVILSSMLLLPMYLQGGLVLTAFASGLVLLPGGILNGFMSPVTGRLFDKY
                     GPKWLVIPGFVIVTVVLWFFSNVTTTSTAVLIIILHTCLMIGISMIMMPAQTNGLNQL
                     PREFYPDGTAIMNTLQQMAGAIGTAVAVSIMAAGQHDYMSTVKNPADPAVIPQALTAG
                     VQHAFVFAMIVAIIGLIGAFFMKRVKVDH*"
     gene            complement(270621..272060)
                     /gene="lmrB"
                     /locus_tag="BSU_02670"
                     /old_locus_tag="BSU02670"
     downshifts      complement(270628)
                     /Source="Nicolas_upshifts"
                     /id="D108"
                     /incds=0
                     /nref=162
                     /ntot=245
                     /MaxReadThrough="0.65833"
                     /MaxDrop="6.75228"
                     /score="18.3484535"
                     /energy="-14"
                     /TU="U193"
                     /idTUdmin="U193"
                     /TUdmin="-23"
                     /isTUend="FALSE"
     CDS             complement(272100..272666)
                     /gene="lmrA"
                     /locus_tag="BSU_02680"
                     /old_locus_tag="BSU02680"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12718394, 15317768, 17483215"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12718394, 15317768,
                     17483215; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor of lmrAB and yxaGH
                     operons (flavonoid and antibiotic resistance)"
                     /protein_id="NP_388150.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02680"
                     /db_xref="EnsemblGenomes-Tr:CAB12062"
                     /db_xref="GOA:O34619"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG12612"
                     /db_xref="UniProtKB/Swiss-Prot:O34619"
                     /translation="MSYGDSREKILSAATRLFQLQGYYGTGLNQIIKESGAPKGSLYY
                     HFPGGKEQLAIEAVNEMKEYIRQKIADCMEACTDPAEGIQAFLKELSCQFSCTEDIEG
                     LPVGLLAAETSLKSEPLREACHEAYKEWASVYEEKLRQTGCSESRAKEASTVVNAMIE
                     GGILLSLTAKNSTPLLHISSCIPDLLKR*"
     gene            complement(272100..272666)
                     /gene="lmrA"
                     /locus_tag="BSU_02680"
                     /old_locus_tag="BSU02680"
     promotor_-10    complement(272704..272723)
                     /Source="Nicolas_upshift_promotors"
                     /id="U193"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2398
                     /SigmaFactorBS="cttctttttttgtcttttcatacaatgaattttTCTTGACAa
                     ttgatgattgaatCAAGATAATAGACCAGTCACtatatttttgattgcaattcagtaa
                     g"
                     /listShort="lmrA, lmrB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(272718)
                     /Source="Nicolas_upshifts"
                     /id="U193"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2398
                     /SigmaFactorBS="cttctttttttgtcttttcatacaatgaattttTCTTGACAa
                     ttgatgattgaatCAAGATAATAGACCAGTCACtatatttttgattgcaattcagtaa
                     g"
                     /listShort="lmrA, lmrB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(272738..272745)
                     /Source="Nicolas_upshift_promotors"
                     /id="U193"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2398
                     /SigmaFactorBS="cttctttttttgtcttttcatacaatgaattttTCTTGACAa
                     ttgatgattgaatCAAGATAATAGACCAGTCACtatatttttgattgcaattcagtaa
                     g"
                     /listShort="lmrA, lmrB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    272820..272826
                     /Source="Nicolas_upshift_promotors"
                     /id="U194"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.368631368631369"
                     /psig="0.652347652347652"
                     /xcortree=316
                     /SigmaFactorBS="acaaaaaatactgagagaaaagctgactgatcTTTTGACtga
                     atagataaaatgTACAATGATTAATCATCAtatggatgtaaggagagaaatagatgaa
                     a"
                     /listShort="ansZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    272842..272859
                     /Source="Nicolas_upshift_promotors"
                     /id="U194"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.368631368631369"
                     /psig="0.652347652347652"
                     /xcortree=316
                     /SigmaFactorBS="acaaaaaatactgagagaaaagctgactgatcTTTTGACtga
                     atagataaaatgTACAATGATTAATCATCAtatggatgtaaggagagaaatagatgaa
                     a"
                     /listShort="ansZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        272848
                     /Source="Nicolas_upshifts"
                     /id="U194"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.368631368631369"
                     /psig="0.652347652347652"
                     /xcortree=316
                     /SigmaFactorBS="acaaaaaatactgagagaaaagctgactgatcTTTTGACtga
                     atagataaaatgTACAATGATTAATCATCAtatggatgtaaggagagaaatagatgaa
                     a"
                     /listShort="ansZ"
                     /GFF_Attribute="listLong"
     CDS             272883..274010
                     /gene="ansZ"
                     /locus_tag="BSU_02690"
                     /old_locus_tag="BSU02690"
                     /EC_number="3.5.1.1"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11914346, 17686772"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11914346, 17686772;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2 (putative lipoprotein)"
                     /protein_id="NP_388151.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02690"
                     /db_xref="EnsemblGenomes-Tr:CAB12063"
                     /db_xref="GOA:O34482"
                     /db_xref="InterPro:IPR004550"
                     /db_xref="InterPro:IPR006034"
                     /db_xref="InterPro:IPR020827"
                     /db_xref="InterPro:IPR027473"
                     /db_xref="InterPro:IPR027474"
                     /db_xref="InterPro:IPR027475"
                     /db_xref="InterPro:IPR036152"
                     /db_xref="InterPro:IPR037152"
                     /db_xref="SubtiList:BG12755"
                     /db_xref="UniProtKB/Swiss-Prot:O34482"
                     /translation="MKKQRMLVLFTALLFVFTGCSHSPETKESPKEKAQTQKVSSASA
                     SEKKDLPNIRILATGGTIAGADQSKTSTTEYKAGVVGVESLIEAVPEMKDIANVSGEQ
                     IVNVGSTNIDNKILLKLAKRINHLLASDDVDGIVVTHGTDTLEETAYFLNLTVKSDKP
                     VVIVGSMRPSTAISADGPSNLYNAVKVAGAPEAKGKGTLVVLNDRIASARYVTKTNTT
                     TTDTFKSEEMGFVGTIADDIYFNNEITRKHTKDTDFSVSNLDELPQVDIIYGYQNDGS
                     YLFDAAVKAGAKGIVFAGSGNGSLSDAAEKGADSAVKKGVTVVRSTRTGNGVVTPNQD
                     YAEKDLLASNSLNPQKARMLLMLALTKTNDPQKIQAYFNEY*"
     gene            272883..274010
                     /gene="ansZ"
                     /locus_tag="BSU_02690"
                     /old_locus_tag="BSU02690"
     downshifts      273983
                     /Source="Nicolas_upshifts"
                     /id="D109"
                     /incds=0
                     /nref=3
                     /ntot=26
                     /MaxReadThrough="1.70459"
                     /MaxDrop="4.27333"
                     /score="23.2201078"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U194"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    274107..274113
                     /Source="Nicolas_upshift_promotors"
                     /id="U195"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig=1
                     /xcortree=3077
                     /SigmaFactorBS="tctgaatcttaaaatttctttaaaaataagccaaaattacCC
                     TTTACttaattaatttggTAACGTAATATAATTGGAGAatttgttacaaaaaaaggag
                     g"
                     /listShort="estA, S100, yccF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    274127..274146
                     /Source="Nicolas_upshift_promotors"
                     /id="U195"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig=1
                     /xcortree=3077
                     /SigmaFactorBS="tctgaatcttaaaatttctttaaaaataagccaaaattacCC
                     TTTACttaattaatttggTAACGTAATATAATTGGAGAatttgttacaaaaaaaggag
                     g"
                     /listShort="estA, S100, yccF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        274127
                     /Source="Nicolas_upshifts"
                     /id="U195"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig=1
                     /xcortree=3077
                     /SigmaFactorBS="tctgaatcttaaaatttctttaaaaataagccaaaattacCC
                     TTTACttaattaatttggTAACGTAATATAATTGGAGAatttgttacaaaaaaaggag
                     g"
                     /listShort="estA, S100, yccF"
                     /GFF_Attribute="listLong"
     CDS             274173..274811
                     /gene="estA"
                     /locus_tag="BSU_02700"
                     /old_locus_tag="BSU02700"
                     /EC_number="3.1.1.3"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8396026, 15812018, 18053819, 11029590, 24827611,
                     28963005"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8396026, 15812018,
                     18053819, 11029590, 24827611, 28963005; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted alkaliphilic lipase"
                     /protein_id="NP_388152.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02700"
                     /db_xref="EnsemblGenomes-Tr:CAB12064"
                     /db_xref="GOA:P37957"
                     /db_xref="InterPro:IPR002918"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:1I6W"
                     /db_xref="PDB:1ISP"
                     /db_xref="PDB:1R4Z"
                     /db_xref="PDB:1R50"
                     /db_xref="PDB:1T2N"
                     /db_xref="PDB:1T4M"
                     /db_xref="PDB:2QXT"
                     /db_xref="PDB:2QXU"
                     /db_xref="PDB:3D2A"
                     /db_xref="PDB:3D2B"
                     /db_xref="PDB:3D2C"
                     /db_xref="PDB:3QMM"
                     /db_xref="PDB:3QZU"
                     /db_xref="PDB:5CRI"
                     /db_xref="PDB:5CT4"
                     /db_xref="PDB:5CT5"
                     /db_xref="PDB:5CT6"
                     /db_xref="PDB:5CT8"
                     /db_xref="PDB:5CT9"
                     /db_xref="PDB:5CTA"
                     /db_xref="PDB:5CUR"
                     /db_xref="SubtiList:BG10679"
                     /db_xref="UniProtKB/Swiss-Prot:P37957"
                     /translation="MKFVKRRIIALVTILMLSVTSLFALQPSAKAAEHNPVVMVHGIG
                     GASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRFVQKVLDETGAKKV
                     DIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKALPGTDPNQKILYTSIY
                     SSADMIVMNYLSRLDGARNVQIHGVGHIGLLYSSQVNSLIKEGLNGGGQNTN*"
     gene            274173..274811
                     /gene="estA"
                     /locus_tag="BSU_02700"
                     /old_locus_tag="BSU02700"
     downshifts      274797
                     /Source="Nicolas_upshifts"
                     /id="D110"
                     /incds=0
                     /nref=15
                     /ntot=117
                     /MaxReadThrough="4.54554"
                     /MaxDrop="4.10395"
                     /score="23.2201078"
                     /energy="-7.6"
                     /TU="U195"
                     /idTUdmin="U194"
                     /TUdmin=814
                     /isTUend="FALSE"
     S_feature       274842..275432
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_292874_293464"
                     /HighExp="M9-tran, GM 150, LoTm, MG 150, GM 120, aero,
                     T-1.40H, M/G, S2, GM 90"
                     /AntisenseName="yczC"
                     /AntisenseCor="3.5651747957185502E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S100"
     CDS             complement(274849..275232)
                     /gene="yczC"
                     /locus_tag="BSU_02710"
                     /old_locus_tag="BSU02710"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15849754, 16850406; Product type
                     m:membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein of unknown
                     function"
                     /protein_id="NP_388153.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02710"
                     /db_xref="EnsemblGenomes-Tr:CAB12065"
                     /db_xref="GOA:O31469"
                     /db_xref="InterPro:IPR010432"
                     /db_xref="SubtiList:BG12778"
                     /db_xref="UniProtKB/Swiss-Prot:O31469"
                     /translation="MELAGFMLRACALLLDVIIAAAVILAAGFTFGDGSAGVIIVAIL
                     MLIVYPLLMPLTNWKGTLGKKIIGLQIVRDETYKKISFPQAIVRYLIAWVHVFSRLIY
                     LTAAFTKKKQTVHDMAAKTIVLKAE*"
     gene            complement(274849..275232)
                     /gene="yczC"
                     /locus_tag="BSU_02710"
                     /old_locus_tag="BSU02710"
     downshifts      complement(274873)
                     /Source="Nicolas_upshifts"
                     /id="D111"
                     /incds=0
                     /nref=4
                     /ntot=94
                     /MaxReadThrough="0.85389"
                     /MaxDrop="2.7858"
                     /score="15.0330092"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U196"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(275262..275281)
                     /Source="Nicolas_upshift_promotors"
                     /id="U196"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.835164835164835"
                     /xcortree=3082
                     /SigmaFactorBS="aacttttgtgatttaaggcttatcaccTATTCCCActttagg
                     cccttcTTTTTTACAATCATTAGGTGtttatttaacattttaaggagtgtttctattg
                     g"
                     /listShort="yczC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(275269)
                     /Source="Nicolas_upshifts"
                     /id="U196"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.835164835164835"
                     /xcortree=3082
                     /SigmaFactorBS="aacttttgtgatttaaggcttatcaccTATTCCCActttagg
                     cccttcTTTTTTACAATCATTAGGTGtttatttaacattttaaggagtgtttctattg
                     g"
                     /listShort="yczC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(275295..275302)
                     /Source="Nicolas_upshift_promotors"
                     /id="U196"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.835164835164835"
                     /xcortree=3082
                     /SigmaFactorBS="aacttttgtgatttaaggcttatcaccTATTCCCActttagg
                     cccttcTTTTTTACAATCATTAGGTGtttatttaacattttaaggagtgtttctattg
                     g"
                     /listShort="yczC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    275404..275407
                     /Source="Nicolas_upshift_promotors"
                     /id="U197"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.916083916083916"
                     /psig="0.999000999001"
                     /xcortree=2575
                     /SigmaFactorBS="acattaccaaattcttttttagcccgaaacCAAGccctcaga
                     agttattTTTGTTAAAATAGAAAAGTTacaacagaattcggagggtttattgtgggaa
                     a"
                     /listShort="yccF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    275423..275442
                     /Source="Nicolas_upshift_promotors"
                     /id="U197"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.916083916083916"
                     /psig="0.999000999001"
                     /xcortree=2575
                     /SigmaFactorBS="acattaccaaattcttttttagcccgaaacCAAGccctcaga
                     agttattTTTGTTAAAATAGAAAAGTTacaacagaattcggagggtttattgtgggaa
                     a"
                     /listShort="yccF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        275434
                     /Source="Nicolas_upshifts"
                     /id="U197"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.916083916083916"
                     /psig="0.999000999001"
                     /xcortree=2575
                     /SigmaFactorBS="acattaccaaattcttttttagcccgaaacCAAGccctcaga
                     agttattTTTGTTAAAATAGAAAAGTTacaacagaattcggagggtttattgtgggaa
                     a"
                     /listShort="yccF"
                     /GFF_Attribute="listLong"
     CDS             275467..276543
                     /gene="yccF"
                     /locus_tag="BSU_02720"
                     /old_locus_tag="BSU02720"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388154.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02720"
                     /db_xref="EnsemblGenomes-Tr:CAB12066"
                     /db_xref="GOA:O34478"
                     /db_xref="InterPro:IPR004027"
                     /db_xref="InterPro:IPR007889"
                     /db_xref="InterPro:IPR036915"
                     /db_xref="SubtiList:BG12756"
                     /db_xref="UniProtKB/Swiss-Prot:O34478"
                     /translation="MGKVKRNAPCPCGSGKKYKKCCGSKVVDFPAELAAKEAKQIQED
                     LVEYAFTVHRESISGFINQHDFLSAMDRQTKDISVFNLGIWGIFFHPLAGEKTIFEEY
                     LQKKGDSITRPKTREIVESWQSMTPALLLLKDLKEGIIHFEDVITAKQFEVEMDASNQ
                     DLPPVGSLILGYPIHEAEKAEFFMQFTIFPVKRTEALISKVKKYADAAVKDGKTPEDF
                     MKQEFNNVLFALLAEKDEEPQAEKAEVSTVEWANDLEKETAAAIEEGMSGEEYPTELI
                     PAVIDIWKTFCEKKSPVIRKPEAFAAAVEYYVNAISLNGASVSQAKLAKKYGVSASTI
                     SSRYKEIESTLQDEADRFAQALSS*"
     gene            275467..276543
                     /gene="yccF"
                     /locus_tag="BSU_02720"
                     /old_locus_tag="BSU02720"
     downshifts      276537
                     /Source="Nicolas_upshifts"
                     /id="D112"
                     /incds=0
                     /nref=60
                     /ntot=248
                     /MaxReadThrough="1.55048"
                     /MaxDrop="5.18328"
                     /score="33.0000484"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U197"
                     /TUdmin=2
                     /isTUend="TRUE"
     CDS             complement(276583..277539)
                     /gene="natK"
                     /locus_tag="BSU_02730"
                     /old_locus_tag="BSU02730"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 17322186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 17322186;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [NatR]"
                     /protein_id="NP_388155.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02730"
                     /db_xref="EnsemblGenomes-Tr:CAB12067"
                     /db_xref="GOA:P70954"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR032834"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG11997"
                     /db_xref="UniProtKB/Swiss-Prot:P70954"
                     /translation="MITLFQCLYLILFSFICYQGAAAFSHSTAASWLAAALGAAAAGL
                     YIWNTKRVWKHCSSGLCAWIAVIQVMSVGVVLIGTDIMPVLCVIAIFAGCEGLRIGQS
                     ALQARLSDQIDKLTQAEQHANQMLIDVRSRNHDTMKHITAIKSAQPKADTQAYIQNWA
                     DQYSQYDRFLKGENAYVAGVLYDFLEKARASNVSVSLHMHTPLSSLPFSPADQVSLVG
                     NILENALDSAAEAREKAEIKLETSLRSGLYVLTCENSTPGMDPKVLDTIYQSFGRSTK
                     NGAHEGMGTYIIQKLVKGAFGRLDFTYRHPIFRLEIKIPFQK*"
     gene            complement(276583..277539)
                     /gene="natK"
                     /locus_tag="BSU_02730"
                     /old_locus_tag="BSU02730"
     downshifts      complement(276611)
                     /Source="Nicolas_upshifts"
                     /id="D113"
                     /incds=0
                     /nref=1
                     /ntot=129
                     /MaxReadThrough="0.86926"
                     /MaxDrop="2.67125"
                     /score="14.02819"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U198"
                     /TUdmin=176
                     /isTUend="FALSE"
     CDS             complement(277552..278253)
                     /gene="natR"
                     /locus_tag="BSU_02740"
                     /old_locus_tag="BSU02740"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 17322186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 17322186;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [NatK]"
                     /protein_id="NP_388156.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02740"
                     /db_xref="EnsemblGenomes-Tr:CAB12068"
                     /db_xref="GOA:P70955"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR007492"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="SubtiList:BG11998"
                     /db_xref="UniProtKB/Swiss-Prot:P70955"
                     /translation="MVKVGLVDDYRVDLEKLEAIVSRMQDVEIVFSTDSAKEAYRRVK
                     NGDIDLLLADIEMPHMSGYELADLIKSHSLDVDVIFVTGHGGYAVHAFDLNVHDYIMK
                     PYYADRLAASFDRYLKKKTETSLNGRILIKQKSEMHVLQKKDIIFAERTGRSTTIVTT
                     AEEVQTYQTLNDIKGDLPEKDFLRSHRSFIINIHYIKHFSAYTKHSFTVSFEGTSKKA
                     MITKQQLDYFQNYYF*"
     gene            complement(277552..278253)
                     /gene="natR"
                     /locus_tag="BSU_02740"
                     /old_locus_tag="BSU02740"
     promotor_-10    complement(278277..278296)
                     /Source="Nicolas_upshift_promotors"
                     /id="U198"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.992007992007992"
                     /xcortree=2173
                     /SigmaFactorBS="attagttggataaagttgtcgcgaagagTTCTttttatgtcg
                     tgaaaTGGGATAGAATAAAGATGATtctatgtaactaggggaatgataatggtaaaag
                     t"
                     /listShort="natR, natK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(278283)
                     /Source="Nicolas_upshifts"
                     /id="U198"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.992007992007992"
                     /xcortree=2173
                     /SigmaFactorBS="attagttggataaagttgtcgcgaagagTTCTttttatgtcg
                     tgaaaTGGGATAGAATAAAGATGATtctatgtaactaggggaatgataatggtaaaag
                     t"
                     /listShort="natR, natK"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(278312..278315)
                     /Source="Nicolas_upshift_promotors"
                     /id="U198"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.992007992007992"
                     /xcortree=2173
                     /SigmaFactorBS="attagttggataaagttgtcgcgaagagTTCTttttatgtcg
                     tgaaaTGGGATAGAATAAAGATGATtctatgtaactaggggaatgataatggtaaaag
                     t"
                     /listShort="natR, natK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    278333..278336
                     /Source="Nicolas_upshift_promotors"
                     /id="U199"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.844155844155844"
                     /xcortree=1785
                     /SigmaFactorBS="cgacataaaaagaactcttcgcgacaactttATCCaactaat
                     ccagctttTCGTATATAGTCATTACTAGaaataaagataagggagattgtgacatgat
                     t"
                     /listShort="natA, natB, yccK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    278352..278371
                     /Source="Nicolas_upshift_promotors"
                     /id="U199"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.844155844155844"
                     /xcortree=1785
                     /SigmaFactorBS="cgacataaaaagaactcttcgcgacaactttATCCaactaat
                     ccagctttTCGTATATAGTCATTACTAGaaataaagataagggagattgtgacatgat
                     t"
                     /listShort="natA, natB, yccK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        278362
                     /Source="Nicolas_upshifts"
                     /id="U199"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.844155844155844"
                     /xcortree=1785
                     /SigmaFactorBS="cgacataaaaagaactcttcgcgacaactttATCCaactaat
                     ccagctttTCGTATATAGTCATTACTAGaaataaagataagggagattgtgacatgat
                     t"
                     /listShort="natA, natB, yccK"
                     /GFF_Attribute="listLong"
     CDS             278397..279137
                     /gene="natA"
                     /locus_tag="BSU_02750"
                     /old_locus_tag="BSU02750"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10356997, 17322186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10356997, 17322186;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+ ABC efflux transporter (ATP-binding
                     protein)"
                     /protein_id="NP_388157.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02750"
                     /db_xref="EnsemblGenomes-Tr:CAB12069"
                     /db_xref="GOA:P46903"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11338"
                     /db_xref="UniProtKB/Swiss-Prot:P46903"
                     /translation="MITLTDCSRRFQDKKKVVKAVRDVSLTIEKGEVVGILGENGAGK
                     TTMLRMIASLLEPSQGVITVDGFDTVKQPAEVKQRIGVLFGGETGLYDRMTAKENLQY
                     FGRLYGLNRHEIKARIEDLSKRFGMRDYMNRRVGGFSKGMRQKVAIARALIHDPDIIL
                     FDEPTTGLDITSSNIFREFIQQLKREQKTILFSSHIMEEVQALCDSVIMIHSGEVIYR
                     GALESLYESERSEDLNYIFMSKLVRGIS*"
     gene            278397..279137
                     /gene="natA"
                     /locus_tag="BSU_02750"
                     /old_locus_tag="BSU02750"
     CDS             279138..280298
                     /gene="natB"
                     /locus_tag="BSU_02760"
                     /old_locus_tag="BSU02760"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10356997, 15849754, 16850406, 17322186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10356997, 15849754,
                     16850406, 17322186; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+ ABC efflux transporter (permease)"
                     /protein_id="NP_388158.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02760"
                     /db_xref="EnsemblGenomes-Tr:CAB12070"
                     /db_xref="GOA:P46904"
                     /db_xref="InterPro:IPR032688"
                     /db_xref="SubtiList:BG11339"
                     /db_xref="UniProtKB/Swiss-Prot:P46904"
                     /translation="MLSHIYKKEMIDALRDRKTILLTILVPMIMMLGLVFFYESMLSD
                     KGEQYTLAVGHSLPPALESKLNEIDEISVKTFAKPEEAVDEGKADAYLNVPKEFDSYV
                     NSMTPFKVDVYGNSIDQGSSNAMQLVQSALDQYKNEIVQQRLTNKHIDQSVIQPFTIQ
                     QKEADEEKGTSAIMLSAILPMLILTSIVSGAMPIALDIMAGEKDRKSIEALLLTPVSR
                     NKVLVGKWLAVSTFGVASGVFALVFLILSTVLFTENLKTAFQLGDHMWSVIGASALII
                     VLSALLISAMELFISIMSSSVKEAQSYMSLVVFLPVFPMFFIFSKAPNQFDLSYFLIP
                     FLNLHALFKQLLFGMVDPATILSTSGTIAVLIAIFFLLARACFLKDKWVLPK*"
     gene            279138..280298
                     /gene="natB"
                     /locus_tag="BSU_02760"
                     /old_locus_tag="BSU02760"
     promotor_-35    280349..280357
                     /Source="Nicolas_upshift_promotors"
                     /id="U200"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=430
                     /SigmaFactorBS="ggagaaatacactttctcctttttgtatatcctgaaaaaaGA
                     AGGAAAAtagaaaaaggaTATCTAATACAAAAAGTGAccctgcactatttttcatcaa
                     a"
                     /listShort="yccK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    280369..280387
                     /Source="Nicolas_upshift_promotors"
                     /id="U200"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=430
                     /SigmaFactorBS="ggagaaatacactttctcctttttgtatatcctgaaaaaaGA
                     AGGAAAAtagaaaaaggaTATCTAATACAAAAAGTGAccctgcactatttttcatcaa
                     a"
                     /listShort="yccK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        280369
                     /Source="Nicolas_upshifts"
                     /id="U200"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=430
                     /SigmaFactorBS="ggagaaatacactttctcctttttgtatatcctgaaaaaaGA
                     AGGAAAAtagaaaaaggaTATCTAATACAAAAAGTGAccctgcactatttttcatcaa
                     a"
                     /listShort="yccK"
                     /GFF_Attribute="listLong"
     CDS             280434..281366
                     /gene="yccK"
                     /locus_tag="BSU_02770"
                     /old_locus_tag="BSU02770"
                     /EC_number="1.-.-.-"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17322186, 24330391;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ion channel associated aldo-keto
                     reductase"
                     /protein_id="NP_388159.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02770"
                     /db_xref="EnsemblGenomes-Tr:CAB12071"
                     /db_xref="GOA:P46905"
                     /db_xref="InterPro:IPR020471"
                     /db_xref="InterPro:IPR023210"
                     /db_xref="InterPro:IPR036812"
                     /db_xref="SubtiList:BG11340"
                     /db_xref="UniProtKB/Swiss-Prot:P46905"
                     /translation="MDQTRTLGKTKLKVKRIGFGANAVGGHNLFPNLNDETGKDLVRT
                     ALDGGVNFIDTAFIYGLGRSEELIGEVVQERGVRNELIIATKGAHKEVDGSIELDNSR
                     EFLRSEVEKSLKRLKTDYIDLYYVHFPDGKTPLAEVAGTLKELKDEGKIKAIGASNLD
                     YQQLQDFNADGYLEVFQAEYSLIQRDAEKELLPYCEKQGISFIPYFPLASGLLTGKFT
                     QDTVFDDFRKDKPQFQGETFIHNLKKVDKLKAVAEEKQADTAHVALAWLLTRPAIDAI
                     IPGAKRPEQLQDNLKTLNIELTEDEVNFISDIFK*"
     gene            280434..281366
                     /gene="yccK"
                     /locus_tag="BSU_02770"
                     /old_locus_tag="BSU02770"
     CDS             complement(281406..282470)
                     /gene="ycdA"
                     /locus_tag="BSU_02780"
                     /old_locus_tag="BSU02780"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 22496484; Product type
                     lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein involved in swarming behaviour"
                     /protein_id="NP_388160.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02780"
                     /db_xref="EnsemblGenomes-Tr:CAB12072"
                     /db_xref="GOA:O34538"
                     /db_xref="InterPro:IPR029050"
                     /db_xref="InterPro:IPR029051"
                     /db_xref="InterPro:IPR031343"
                     /db_xref="PDB:4R4G"
                     /db_xref="SubtiList:BG12757"
                     /db_xref="UniProtKB/Swiss-Prot:O34538"
                     /translation="MFQKKTYAVFLILLLMMFTAACSGSKTSAEKKESETEKSSDIAQ
                     VKIKDVSYTLPSKYDKSTSDDQLVLKVNVAVKNTGKDPLNVDSMDFTLYQGDTKMSDT
                     DPEDYSEKLQGSTINADKSVEGNLFFVVDKGKQYELNYTPESYGDKKPKSVTFKIDGK
                     DKKILATADKLQDSAKALSAYVDVLLFGKDNADFEKITGANKNEIVNDFNESAKDGYL
                     SASGLSSTYADSKALDNIVNGIKEGLSKNSSIQAKTTSISKDEAIVEATVKPVDASSL
                     SDRIEDKVKDYYSKNSSASYEEAVKYALQVYPEEFKKLGPASSEKTVEVKMKKNDIDQ
                     WQLDMDDYRAAELVEAFIKE*"
     gene            complement(281406..282470)
                     /gene="ycdA"
                     /locus_tag="BSU_02780"
                     /old_locus_tag="BSU02780"
     downshifts      complement(281407)
                     /Source="Nicolas_upshifts"
                     /id="D114"
                     /incds=0
                     /nref=198
                     /ntot=222
                     /MaxReadThrough="0.57029"
                     /MaxDrop="8.85093"
                     /score="27.0612397"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U201"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(282471..282661)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_300503_300693_c"
                     /HighExp="S5, S4, MG 45, MG 15, MG-0.2, MG 25, MG-0.1, MG
                     10, S3, MG t5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S101"
     CDS             complement(282493..282624)
                     /locus_tag="BSU_02785"
                     /old_locus_tag="BSU02785"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513941.1"
                     /translation="MTKEGGVSRKSGENREKRTDFFGYMMLIHSKRSISQRQKTPLS*
                     "
     gene            complement(282493..282624)
                     /locus_tag="BSU_02785"
                     /old_locus_tag="BSU02785"
     promotor_-10    complement(282646..282665)
                     /Source="Nicolas_upshift_promotors"
                     /id="U201"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.997002997002997"
                     /xcortree=2915
                     /SigmaFactorBS="ttaccagaacatttttcaccaaaaataggatgatgaaccTAT
                     TCAATataaaagctaataaTCTTAAAATTAATTCCGTTGtaactttttataggtccat
                     t"
                     /listShort="S101, ycdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(282666)
                     /Source="Nicolas_upshifts"
                     /id="U201"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.997002997002997"
                     /xcortree=2915
                     /SigmaFactorBS="ttaccagaacatttttcaccaaaaataggatgatgaaccTAT
                     TCAATataaaagctaataaTCTTAAAATTAATTCCGTTGtaactttttataggtccat
                     t"
                     /listShort="S101, ycdA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(282680..282687)
                     /Source="Nicolas_upshift_promotors"
                     /id="U201"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.997002997002997"
                     /xcortree=2915
                     /SigmaFactorBS="ttaccagaacatttttcaccaaaaataggatgatgaaccTAT
                     TCAATataaaagctaataaTCTTAAAATTAATTCCGTTGtaactttttataggtccat
                     t"
                     /listShort="S101, ycdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             282798..284216
                     /gene="ycdB"
                     /locus_tag="BSU_02790"
                     /old_locus_tag="BSU02790"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388161.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02790"
                     /db_xref="EnsemblGenomes-Tr:CAB12073"
                     /db_xref="InterPro:IPR032599"
                     /db_xref="SubtiList:BG12758"
                     /db_xref="UniProtKB/Swiss-Prot:O34621"
                     /translation="MKGAAFVKKEGLKQKALEIGRVPTHLKLEIEDYGGDDKRAHFCW
                     ADPQDENTGIIVELGPDGELESLSRDIEPESGERLSEEKLEDIMRQFVETHHPGALSA
                     FVREENDRAYGDKVRFSYVQMEAGLPLPMSGFMADVSLSGEIVYFRYYGEAGSIIKPK
                     RVADVEEALAFIKKDVEFDLLFEVLHRSVYKNGDDQPHLVYEPEGRAITVPADLVQEE
                     QAVDDDDDYREPESFPLPLFEGIREKADPDSMIGIENGFVKEREADLGDGRIGIVWRN
                     PDDPVYQPADKSMDSWFKGRTHQVLKTIYNKETGKLEGVMSFMEKKGPLTVTLAECEK
                     IALRFLFALFPNADQYFRIRYDEKDEEENAVAGFTFEAHCHGVPLRFGQIRICVSRQT
                     GYITVYMGPDIDPNKLATIDPVPAISVEQAKSIFWQHFKVELGWEREYGDDEEHSYRL
                     VYKPVYPHFIDAHTGEPVFSIW*"
     gene            282798..284216
                     /gene="ycdB"
                     /locus_tag="BSU_02790"
                     /old_locus_tag="BSU02790"
     promotor_-10    complement(284259..284277)
                     /Source="Nicolas_upshift_promotors"
                     /id="U202"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.96903096903097"
                     /xcortree=2432
                     /SigmaFactorBS="agtgaagaaaggtccttttctattattgtCATTGTTTtttga
                     gattctttCTGTTACTTTCATCACATActctcttctatatctgaggcaattgcgtgac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(284267)
                     /Source="Nicolas_upshifts"
                     /id="U202"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.96903096903097"
                     /xcortree=2432
                     /SigmaFactorBS="agtgaagaaaggtccttttctattattgtCATTGTTTtttga
                     gattctttCTGTTACTTTCATCACATActctcttctatatctgaggcaattgcgtgac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(284291..284298)
                     /Source="Nicolas_upshift_promotors"
                     /id="U202"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.96903096903097"
                     /xcortree=2432
                     /SigmaFactorBS="agtgaagaaaggtccttttctattattgtCATTGTTTtttga
                     gattctttCTGTTACTTTCATCACATActctcttctatatctgaggcaattgcgtgac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       284323..284402
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_302355_302434"
                     /HighExp="ferm, M40t45, M0t45, Lbstat, S0, nit, LBGtran,
                     Lbtran, G135, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.868"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S102"
     upshifts        284323
                     /Source="Nicolas_upshifts"
                     /id="U203"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.48051948051948"
                     /psig="0.868131868131868"
                     /xcortree=1586
                     /SigmaFactorBS="tgatgaaagtaacagaaagaatctcaaaaaacaatgacaata
                     atagaaaaggacctttcttcACTTTAAatgaagaaaggtctTTTTATATAATAAACAG
                     G"
                     /listShort="S102, ycdC, S103"
                     /listLong="rapJ"
     promotor_-35    284325..284331
                     /Source="Nicolas_upshift_promotors"
                     /id="U203"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.48051948051948"
                     /psig="0.868131868131868"
                     /xcortree=1586
                     /SigmaFactorBS="tgatgaaagtaacagaaagaatctcaaaaaacaatgacaata
                     atagaaaaggacctttcttcACTTTAAatgaagaaaggtctTTTTATATAATAAACAG
                     G"
                     /listShort="S102, ycdC, S103"
                     /listLong="rapJ"
                     /label="promotor_-35"
     promotor_-10    284346..284363
                     /Source="Nicolas_upshift_promotors"
                     /id="U203"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.48051948051948"
                     /psig="0.868131868131868"
                     /xcortree=1586
                     /SigmaFactorBS="tgatgaaagtaacagaaagaatctcaaaaaacaatgacaata
                     atagaaaaggacctttcttcACTTTAAatgaagaaaggtctTTTTATATAATAAACAG
                     G"
                     /listShort="S102, ycdC, S103"
                     /listLong="rapJ"
                     /label="promotor_-10"
     CDS             284403..285764
                     /gene="ycdC"
                     /locus_tag="BSU_02800"
                     /old_locus_tag="BSU02800"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388162.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02800"
                     /db_xref="EnsemblGenomes-Tr:CAB12074"
                     /db_xref="InterPro:IPR032599"
                     /db_xref="SubtiList:BG12759"
                     /db_xref="UniProtKB/Swiss-Prot:O34772"
                     /translation="MVNKQLKKKAQEIGNVPTHYELEIEDYDQKQKKYGQAYFIWKDP
                     KDPEKHITVELRNDGALLTFSTTVHSETDKKLPDAELKLTALQFAAANHPGTFMNFHF
                     QGKEERGQHIRFVYTKMELGLPIPNSGFLIDMTRSGQIVHFLYYGEGHKAEVPTEFVA
                     KEKVVSHYLNTMSFELMYDVIDGEQEPRLVYEPILPGYSYPADVDEIVPDQHIADERI
                     ENTAPLPPLQNKEEVDIFALLGFTSDMQKVSERDFGEQIGSTWRRGAAPERKDLSIGS
                     YFETRNKNTIKMKTDKRTGKLKAALSFMDWRNNLQCSTEECQEIALQFLYALYPRAAE
                     FFRVNPVRIDERGRVRNHFSVWYKGVPLRFGAARIIVNPETGLIDAFMAPDIEPEQLE
                     AINHRPDVSAEEAKEAFLAAFDVKLEWQPDFTAGSDQHCKLVYKPVYPSYIDAHIRKK
                     KRL*"
     gene            284403..285764
                     /gene="ycdC"
                     /locus_tag="BSU_02800"
                     /old_locus_tag="BSU02800"
     S_feature       285765..286345
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_303797_304377"
                     /HighExp="ferm, M0t45, G135, G180, H2O2, M40t45, G150,
                     Paraq, S0, nit"
                     /AntisenseName="cwlK"
                     /AntisenseCor="0.27553388443794402"
                     /AntisenseRegPval="-5.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.868"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S103"
     CDS             complement(285772..286275)
                     /gene="cwlK"
                     /locus_tag="BSU_02810"
                     /old_locus_tag="BSU02810"
                     /EC_number="3.4.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:17588176"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17588176; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D:-endopeptidase"
                     /protein_id="NP_388163.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02810"
                     /db_xref="EnsemblGenomes-Tr:CAB12075"
                     /db_xref="GOA:O34360"
                     /db_xref="InterPro:IPR009045"
                     /db_xref="SubtiList:BG12760"
                     /db_xref="UniProtKB/Swiss-Prot:O34360"
                     /translation="MNLPAKTFVILCILFLLDLCFSYIRHEWHSQNALQDMPVPSDLH
                     PIVKQNADALKAAAANKGIDVVITEGFRSFKEQDELYKQGRTKKGNIVTYARGGESYH
                     NYGLAIDFALQKKDGSIIWDMEYDGNQNGKSDWLEVVEIAKTLGFEWGGDWKRFKDYP
                     HLEMIPN*"
     gene            complement(285772..286275)
                     /gene="cwlK"
                     /locus_tag="BSU_02810"
                     /old_locus_tag="BSU02810"
     S_feature       complement(286276..286357)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_304308_304389_c"
                     /HighExp="Cold, T0.30H, LBGstat, C30, T-0.40H, T1.0H,
                     T1.30H, H2O2, T0.0H, T-1.10H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.946"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S104"
     upshifts        286347
                     /Source="Nicolas_upshifts"
                     /id="U204"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2275
                     /SigmaFactorBS="tttctcaagatgtgctgaatgttaacgcttttaagtgattga
                     ctctctctaaaagcgaacagcTATGATAAAATATAACATAAatagtagcaggaggaag
                     g"
                     /listShort="rapJ"
                     /listLong="ycdF, ycdG, adcA, adcC, adcB"
     promotor_-10    complement(286349..286368)
                     /Source="Nicolas_upshift_promotors"
                     /id="U205"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig="0.946053946053946"
                     /xcortree=2433
                     /SigmaFactorBS="tgatggaatctttgctctcatcggtctgcctccttccTcctg
                     ctactattTATGTTATATTTTATCATAGctgttcgcttttagagagagtcaatcactt
                     a"
                     /listShort="S104, cwlK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_feature    286350..286369
                     /Source="Nicolas_upshift_promotors"
                     /id="U204"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2275
                     /SigmaFactorBS="tttctcaagatgtgctgaatgttaacgcttttaagtgattga
                     ctctctctaaaagcgaacagcTATGATAAAATATAACATAAatagtagcaggaggaag
                     g"
                     /listShort="rapJ"
                     /listLong="ycdF, ycdG, adcA, adcC, adcB"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(286358)
                     /Source="Nicolas_upshifts"
                     /id="U205"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig="0.946053946053946"
                     /xcortree=2433
                     /SigmaFactorBS="tgatggaatctttgctctcatcggtctgcctccttccTcctg
                     ctactattTATGTTATATTTTATCATAGctgttcgcttttagagagagtcaatcactt
                     a"
                     /listShort="S104, cwlK"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(286381)
                     /Source="Nicolas_upshift_promotors"
                     /id="U205"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig="0.946053946053946"
                     /xcortree=2433
                     /SigmaFactorBS="tgatggaatctttgctctcatcggtctgcctccttccTcctg
                     ctactattTATGTTATATTTTATCATAGctgttcgcttttagagagagtcaatcactt
                     a"
                     /listShort="S104, cwlK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             286398..287519
                     /gene="rapJ"
                     /locus_tag="BSU_02820"
                     /old_locus_tag="BSU02820"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16816200"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16816200; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator aspartate phosphatase"
                     /protein_id="NP_388164.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02820"
                     /db_xref="EnsemblGenomes-Tr:CAB12076"
                     /db_xref="GOA:O34327"
                     /db_xref="InterPro:IPR011990"
                     /db_xref="InterPro:IPR013026"
                     /db_xref="InterPro:IPR019734"
                     /db_xref="PDB:4GYO"
                     /db_xref="SubtiList:BG12663"
                     /db_xref="UniProtKB/Swiss-Prot:O34327"
                     /translation="MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDME
                     ENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFSDMLNEIESNQQKLTGLLEYYFY
                     YFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
                     YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALEHARQLEEAYM
                     IAAAYYNVGHCKYSLGDYKEAEGYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYD
                     KAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTECFDLLESRQLLADAE
                     DLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ*"
     gene            286398..287519
                     /gene="rapJ"
                     /locus_tag="BSU_02820"
                     /old_locus_tag="BSU02820"
     downshifts      287513
                     /Source="Nicolas_upshifts"
                     /id="D115"
                     /incds=0
                     /nref=88
                     /ntot=228
                     /MaxReadThrough="3.8438"
                     /MaxDrop="5.06867"
                     /score="32.2653577"
                     /energy="-13.2"
                     /TU="U204"
                     /idTUdmin="U204"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     promotor_-35    287560..287566
                     /Source="Nicolas_upshift_promotors"
                     /id="U206"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=187
                     /SigmaFactorBS="tggcagagaactacaggttctctgctttttttgtgcTGTTTT
                     CaactcggaaaaacaGGGTATTTTCCACTGCATAgtgagaaacagaggaggatatcaa
                     g"
                     /listShort="ycdF, ycdG, adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    287581..287599
                     /Source="Nicolas_upshift_promotors"
                     /id="U206"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=187
                     /SigmaFactorBS="tggcagagaactacaggttctctgctttttttgtgcTGTTTT
                     CaactcggaaaaacaGGGTATTTTCCACTGCATAgtgagaaacagaggaggatatcaa
                     g"
                     /listShort="ycdF, ycdG, adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        287584
                     /Source="Nicolas_upshifts"
                     /id="U206"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=187
                     /SigmaFactorBS="tggcagagaactacaggttctctgctttttttgtgcTGTTTT
                     CaactcggaaaaacaGGGTATTTTCCACTGCATAgtgagaaacagaggaggatatcaa
                     g"
                     /listShort="ycdF, ycdG, adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
     CDS             287626..288402
                     /gene="ycdF"
                     /locus_tag="BSU_02830"
                     /old_locus_tag="BSU02830"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10220166, 11948145,
                     15805528; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388165.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02830"
                     /db_xref="EnsemblGenomes-Tr:CAB12077"
                     /db_xref="GOA:P80869"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12761"
                     /db_xref="UniProtKB/Swiss-Prot:P80869"
                     /translation="MYKDLTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSG
                     ADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGVEAMP
                     HEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYS
                     TSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVDTKKEESRQKQLKKIPMKAF
                     GKPEEVAAAAAWLVSEEASYVTGATLFVDGGMTLYPSQLE*"
     gene            287626..288402
                     /gene="ycdF"
                     /locus_tag="BSU_02830"
                     /old_locus_tag="BSU02830"
     downshifts      complement(287633)
                     /Source="Nicolas_upshifts"
                     /id="D116"
                     /incds=0
                     /nref=10
                     /ntot=23
                     /MaxReadThrough="0.31912"
                     /MaxDrop="4.8095"
                     /score="0.506500496"
                     /energy="-5.8"
                     /TU="NA"
                     /idTUdmin="U205"
                     /TUdmin="-1914"
                     /isTUend="FALSE"
     CDS             288427..290112
                     /gene="ycdG"
                     /locus_tag="BSU_02840"
                     /old_locus_tag="BSU02840"
                     /EC_number="3.2.1.10"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11544224; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oligo-carbohydrate hydrolase"
                     /protein_id="NP_388166.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02840"
                     /db_xref="EnsemblGenomes-Tr:CAB12078"
                     /db_xref="GOA:O34364"
                     /db_xref="InterPro:IPR006047"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="SubtiList:BG12762"
                     /db_xref="UniProtKB/Swiss-Prot:O34364"
                     /translation="MKTDWWKDAVVYQIYPRSFQDSNGDGIGDLRGIISRLDYIKELG
                     ADVIWICPIYPSPNVDYGYDVTNHKAIMDSYGTMDDFHELLDQVHQRGLKLVMDFVLN
                     HTSVEHPWFKEAELDKNSKYRSYYYWRPGTKNGPPTDWLSNYGCPVWQYEEHTGEYYL
                     HMNAVKQADLNWENPEVRQAVYDMMKFWLDKGVDGLRIDQLHLISKKEYLPSYEDYIN
                     QQAEPKPFQPNGERIHDYLKEITDEVFSHYDVMSVGEVGSVTPEEGLKYTGTDKHELN
                     MIFHFQHMELDQQPGKEHWDLKPLELSDLKSVLTKWQKKLEHQGWNTLFWCNHDQPRI
                     VSRFGDDGEYRKASAKMLAAVIYFMKGTPYIYQGEEIGMTNAPFTRIEDYKDIQTINM
                     YHKRVFEKGYDPNDVMRSILAKSRDHARTPMQWNSGKNAGFTDGTPWLKVNPNFTAIN
                     VEEAQGDPDSVLNYYKKLISLRKQYADLMKGSFDLLLPDDPQLFVYMRENSKQQLLSV
                     NNFSKEQAVFQWPKNCGKAQASLLLSNYNNDDLDDEMVFRPYESRVYLLDKTN*"
     gene            288427..290112
                     /gene="ycdG"
                     /locus_tag="BSU_02840"
                     /old_locus_tag="BSU02840"
     promotor_no_box 289367..289467
                     /Source="Nicolas_upshift_promotors"
                     /id="U207"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.487512487512487"
                     /psig="0.044955044955045"
                     /xcortree=117
                     /SigmaFactorBS="agaagcttgaacatcaaggctggaatacattgttttggtgca
                     accacgaccagccccggattgtgtccagattcggagacgatggggaataccgcaaagc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        289427
                     /Source="Nicolas_upshifts"
                     /id="U207"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.487512487512487"
                     /psig="0.044955044955045"
                     /xcortree=117
                     /SigmaFactorBS="agaagcttgaacatcaaggctggaatacattgttttggtgca
                     accacgaccagccccggattgtgtccagattcggagacgatggggaataccgcaaagc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      289493
                     /Source="Nicolas_upshifts"
                     /id="D117"
                     /incds=1
                     /nref=1
                     /ntot=1
                     /MaxReadThrough="7.77365"
                     /MaxDrop="2.18547"
                     /score="23.9074448"
                     /energy="-10.2"
                     /TU="U206"
                     /idTUdmin="U204"
                     /TUdmin=1914
                     /isTUend="FALSE"
     downshifts      290109
                     /Source="Nicolas_upshifts"
                     /id="D118"
                     /incds=0
                     /nref=13
                     /ntot=56
                     /MaxReadThrough="5.8252"
                     /MaxDrop="5.18702"
                     /score="23.9074448"
                     /energy="-10.2"
                     /TU="U206"
                     /idTUdmin="U204"
                     /TUdmin=2530
                     /isTUend="FALSE"
     promotor_-35    290203..290210
                     /Source="Nicolas_upshift_promotors"
                     /id="U208"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.401598401598402"
                     /psig="0.999000999001"
                     /xcortree=669
                     /SigmaFactorBS="ggcgggaagaataaatgaaaatgaaatttatTCTTGCAAaac
                     gtaatgacttcgGTTTATTATGATATAGGATTacaaaatcgttatcattttgatttaa
                     a"
                     /listShort="adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    290226..290245
                     /Source="Nicolas_upshift_promotors"
                     /id="U208"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.401598401598402"
                     /psig="0.999000999001"
                     /xcortree=669
                     /SigmaFactorBS="ggcgggaagaataaatgaaaatgaaatttatTCTTGCAAaac
                     gtaatgacttcgGTTTATTATGATATAGGATTacaaaatcgttatcattttgatttaa
                     a"
                     /listShort="adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        290232
                     /Source="Nicolas_upshifts"
                     /id="U208"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.401598401598402"
                     /psig="0.999000999001"
                     /xcortree=669
                     /SigmaFactorBS="ggcgggaagaataaatgaaaatgaaatttatTCTTGCAAaac
                     gtaatgacttcgGTTTATTATGATATAGGATTacaaaatcgttatcattttgatttaa
                     a"
                     /listShort="adcA, adcC, adcB"
                     /GFF_Attribute="listLong"
     CDS             290300..291259
                     /gene="znuA"
                     /locus_tag="BSU_02850"
                     /old_locus_tag="BSU02850"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9379902, 12426338, 14730579,
                     21813502; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)-binding lipoprotein"
                     /protein_id="NP_388167.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02850"
                     /db_xref="EnsemblGenomes-Tr:CAB12079"
                     /db_xref="GOA:O34966"
                     /db_xref="InterPro:IPR006127"
                     /db_xref="InterPro:IPR006128"
                     /db_xref="InterPro:IPR006129"
                     /db_xref="PDB:2O1E"
                     /db_xref="SubtiList:BG12763"
                     /db_xref="UniProtKB/Swiss-Prot:O34966"
                     /translation="MFKKWSGLFVIAACFLLVAACGNSSTKGSADSKGDKLHVVTTFY
                     PMYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADLFVYNSEYMETWVPS
                     AEKSMGQGHAVFVNASKGIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVLAQKEV
                     KNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYL
                     AKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEI
                     GAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKDSLLVKS*"
     gene            290300..291259
                     /gene="znuA"
                     /locus_tag="BSU_02850"
                     /old_locus_tag="BSU02850"
     promotor_-35    290855..290861
                     /Source="Nicolas_upshift_promotors"
                     /id="U209"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.461538461538462"
                     /psig="0.998001998001998"
                     /xcortree=670
                     /SigmaFactorBS="aacaaagaatactatgagaaaaatagtaaagaatatATTGCA
                     AaactgcaggatctTGATAAACTATATCGTACAAccgcaaaaaaagcggagaaaaaag
                     a"
                     /listShort="adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    290875..290894
                     /Source="Nicolas_upshift_promotors"
                     /id="U209"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.461538461538462"
                     /psig="0.998001998001998"
                     /xcortree=670
                     /SigmaFactorBS="aacaaagaatactatgagaaaaatagtaaagaatatATTGCA
                     AaactgcaggatctTGATAAACTATATCGTACAAccgcaaaaaaagcggagaaaaaag
                     a"
                     /listShort="adcC, adcB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        290879
                     /Source="Nicolas_upshifts"
                     /id="U209"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.461538461538462"
                     /psig="0.998001998001998"
                     /xcortree=670
                     /SigmaFactorBS="aacaaagaatactatgagaaaaatagtaaagaatatATTGCA
                     AaactgcaggatctTGATAAACTATATCGTACAAccgcaaaaaaagcggagaaaaaag
                     a"
                     /listShort="adcC, adcB"
                     /GFF_Attribute="listLong"
     downshifts      291231
                     /Source="Nicolas_upshifts"
                     /id="D119"
                     /incds=0
                     /nref=140
                     /ntot=250
                     /MaxReadThrough="6.07181"
                     /MaxDrop="5.15011"
                     /score="8.99106569"
                     /energy="-15.9"
                     /TU="U206,U208,U209"
                     /idTUdmin="U206"
                     /TUdmin="-1562"
                     /isTUend="FALSE"
     CDS             291315..292010
                     /gene="znuC"
                     /locus_tag="BSU_02860"
                     /old_locus_tag="BSU02860"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:9379902, 9811636, 21813502"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9379902, 9811636,
                     21813502; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II) transporter (ATP-binding protein)"
                     /protein_id="NP_388168.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02860"
                     /db_xref="EnsemblGenomes-Tr:CAB12080"
                     /db_xref="GOA:O34946"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12764"
                     /db_xref="UniProtKB/Swiss-Prot:O34946"
                     /translation="MNLVSLKDIVFGYSHTPVLDKVSLDIESGEFVGITGPNGASKST
                     LIKVMLGMLKPWEGTVTISKRNTEGKRLTIGYVPQQISSFNAGFPSTVLELVQSGRYT
                     KGKWFKRLNEEDHLEVEKALKMVEMWDLRHRKIGDLSGGQKQKICIARMLASNPDLLM
                     LDEPTTAVDYDSRKGFYEFMHHLVKNHNRTVVMVTHEQNEVQQFLDKVIRLERGEKGG
                     WKCLTWNSCDELF*"
     gene            291315..292010
                     /gene="znuC"
                     /locus_tag="BSU_02860"
                     /old_locus_tag="BSU02860"
     CDS             291968..292810
                     /gene="znuB"
                     /locus_tag="BSU_02870"
                     /old_locus_tag="BSU02870"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 9379902, 9811636, 21813502"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     9379902, 9811636, 21813502; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="high affinity Zn(II) ABC transporter (permease)"
                     /protein_id="NP_388169.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02870"
                     /db_xref="EnsemblGenomes-Tr:CAB12081"
                     /db_xref="GOA:O34610"
                     /db_xref="InterPro:IPR001626"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12765"
                     /db_xref="UniProtKB/Swiss-Prot:O34610"
                     /translation="MEMFDLEFMRRAFLAGGMIAVMAPILGVYLVLRRQALMADTLSH
                     ISLSGVAIGFFLSTNITAASIVVVTIGAIGIEYMRRAYRTYSEVSIAILMAAGLSFAM
                     FLISLSKGTANMSIDQYLFGSLVTVNQQQVYIISIITLLILLYFIVLRRPLYLLTFDE
                     ATAKTSGINTNVLSLSFSIVTGLAISVIIPIIGVLLVSALLVLPAAFAIRIAKGFNMV
                     FITAILISLFSVFTGLTSSYQLGTPPGPSITLLLIVLLLIGFAVQGVWTFIKKEAQRK
                     KRSR*"
     gene            291968..292810
                     /gene="znuB"
                     /locus_tag="BSU_02870"
                     /old_locus_tag="BSU02870"
     downshifts      292797
                     /Source="Nicolas_upshifts"
                     /id="D120"
                     /incds=0
                     /nref=168
                     /ntot=266
                     /MaxReadThrough="2.4865"
                     /MaxDrop="6.44929"
                     /score="27.8218406"
                     /energy="-13.6"
                     /TU="NA"
                     /idTUdmin="U206"
                     /TUdmin=4
                     /isTUend="TRUE"
     CDS             complement(292848..293843)
                     /gene="yceB"
                     /locus_tag="BSU_02880"
                     /old_locus_tag="BSU02880"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16428414; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative luciferase-like monooxygenase"
                     /protein_id="NP_388170.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02880"
                     /db_xref="EnsemblGenomes-Tr:CAB12082"
                     /db_xref="GOA:O34504"
                     /db_xref="InterPro:IPR011251"
                     /db_xref="InterPro:IPR019949"
                     /db_xref="InterPro:IPR036661"
                     /db_xref="SubtiList:BG12766"
                     /db_xref="UniProtKB/Swiss-Prot:O34504"
                     /translation="MIHLSILDQAPVSKGESPVTTLQHSVELAQLSEQWGYKRYWFAE
                     HHSTKGLASTAPEIMIARIAAQTNTIRVGSGGVLLPQYSPFKVAETFRQLEALYPNRI
                     DLGVGRSPGGTTKTRLALTDGVKKSLTEFNRQLQDVSYFLTDSLPPDHPYAGIKAAPL
                     IGTAPELWVLGLGENSARRAAHQGIGYVFGHFINPERGENAFRIYRESFRPSAHFSNP
                     SALFTIFVICAKTDEEAEELALSQDLWLLRVGKGLDSRVPSIEEAKAHPYTASDKKLI
                     EENRKRMVIGSPTTVKQQLLDLTGCYETNEIMVLCNVFDFEAKKESYERLAELFL*"
     gene            complement(292848..293843)
                     /gene="yceB"
                     /locus_tag="BSU_02880"
                     /old_locus_tag="BSU02880"
     promotor_-35    293799..293806
                     /Source="Nicolas_upshift_promotors"
                     /id="U210"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.661338661338661"
                     /psig="0.997002997002997"
                     /xcortree=1949
                     /SigmaFactorBS="accgaatgctggagagttgtcacagggctttcTCCTTTAGaa
                     acaggtgcctgaTCAAGTATGCTTAAATGAATcaaaaggccgcttcctttctgtctgt
                     t"
                     /listShort="S105"
                     /listLong="S106, yceC, yceD, yceE, yceF, yceG, yceH"
                     /label="promotor_-35"
     promotor_-10    293821..293840
                     /Source="Nicolas_upshift_promotors"
                     /id="U210"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.661338661338661"
                     /psig="0.997002997002997"
                     /xcortree=1949
                     /SigmaFactorBS="accgaatgctggagagttgtcacagggctttcTCCTTTAGaa
                     acaggtgcctgaTCAAGTATGCTTAAATGAATcaaaaggccgcttcctttctgtctgt
                     t"
                     /listShort="S105"
                     /listLong="S106, yceC, yceD, yceE, yceF, yceG, yceH"
                     /label="promotor_-10"
     S_feature       293827..294029
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_311859_312061"
                     /HighExp="Diami, Etha, dia5, Salt, H2O2, dia15, Paraq,
                     T-0.40H, T0.30H, G135"
                     /AntisenseName="yceB"
                     /AntisenseCor="0.84300534435872998"
                     /AntisenseRegPval="-73.099999999999994"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S105"
     upshifts        293827
                     /Source="Nicolas_upshifts"
                     /id="U210"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.661338661338661"
                     /psig="0.997002997002997"
                     /xcortree=1949
                     /SigmaFactorBS="accgaatgctggagagttgtcacagggctttcTCCTTTAGaa
                     acaggtgcctgaTCAAGTATGCTTAAATGAATcaaaaggccgcttcctttctgtctgt
                     t"
                     /listShort="S105"
                     /listLong="S106, yceC, yceD, yceE, yceF, yceG, yceH"
     promotor_-10    complement(293875..293894)
                     /Source="Nicolas_upshift_promotors"
                     /id="U211"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig="0.992007992007992"
                     /xcortree=1952
                     /SigmaFactorBS="gctataaagtgcgcttcttaaacaaacCATTTGACgcgggca
                     agtcattTTGCCTATTCTGGTGTCACCatctaaaaacagacagaaaggaagcggcctt
                     t"
                     /listShort="yceB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(293883)
                     /Source="Nicolas_upshifts"
                     /id="U211"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig="0.992007992007992"
                     /xcortree=1952
                     /SigmaFactorBS="gctataaagtgcgcttcttaaacaaacCATTTGACgcgggca
                     agtcattTTGCCTATTCTGGTGTCACCatctaaaaacagacagaaaggaagcggcctt
                     t"
                     /listShort="yceB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(293909..293916)
                     /Source="Nicolas_upshift_promotors"
                     /id="U211"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig="0.992007992007992"
                     /xcortree=1952
                     /SigmaFactorBS="gctataaagtgcgcttcttaaacaaacCATTTGACgcgggca
                     agtcattTTGCCTATTCTGGTGTCACCatctaaaaacagacagaaaggaagcggcctt
                     t"
                     /listShort="yceB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    294013..294022
                     /Source="Nicolas_upshift_promotors"
                     /id="U212"
                     /multdbtbs="SigA,SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1676
                     /SigmaFactorBS="agttttttttcgaggtttttcgtcaattattcttaactttta
                     CGAAACTTTGatataataacaaACGTATATATTAGTAAtttacggcttattttccttg
                     t"
                     /listShort="S106, yceC, yceD, yceE, yceF, yceG, yceH,
                     yceI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       294031..294126
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_312063_312158"
                     /HighExp="T0.0H, T-0.40H, T-1.10H, T0.30H, Salt, T1.0H,
                     Etha, T-1.40H, T1.30H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.997"
                     /label="S106"
     upshifts        294031
                     /Source="Nicolas_upshifts"
                     /id="U212"
                     /multdbtbs="SigA,SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1676
                     /SigmaFactorBS="agttttttttcgaggtttttcgtcaattattcttaactttta
                     CGAAACTTTGatataataacaaACGTATATATTAGTAAtttacggcttattttccttg
                     t"
                     /listShort="S106, yceC, yceD, yceE, yceF, yceG, yceH,
                     yceI"
                     /GFF_Attribute="listLong"
     promotor_-10    294035..294050
                     /Source="Nicolas_upshift_promotors"
                     /id="U212"
                     /multdbtbs="SigA,SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1676
                     /SigmaFactorBS="agttttttttcgaggtttttcgtcaattattcttaactttta
                     CGAAACTTTGatataataacaaACGTATATATTAGTAAtttacggcttattttccttg
                     t"
                     /listShort="S106, yceC, yceD, yceE, yceF, yceG, yceH,
                     yceI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             294127..294726
                     /gene="yceC"
                     /locus_tag="BSU_02890"
                     /old_locus_tag="BSU02890"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 24366250; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress adaptation protein (tellurite
                     resistance)"
                     /protein_id="NP_388171.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02890"
                     /db_xref="EnsemblGenomes-Tr:CAB12083"
                     /db_xref="GOA:P81100"
                     /db_xref="InterPro:IPR003325"
                     /db_xref="SubtiList:BG12767"
                     /db_xref="UniProtKB/Swiss-Prot:P81100"
                     /translation="MAISLEKGQRIDLTKGKAGLSKLMVGLGWDPVSSGGGFFSKLLG
                     GGGPNIDCDASVLMLENGKFTDKKNLIYFGNLKSRCGGVQHTGDNLTGDGAGDDEQIM
                     IDLDKVPGNIDKLVFVVNIYDCVRRKQDFGMIQNAFIRVVDQSNHEEMLKYNLRDNYA
                     GRTSLITAEIYRSGSEWKFAAVGEGTNDTRLEDIISRYV*"
     gene            294127..294726
                     /gene="yceC"
                     /locus_tag="BSU_02890"
                     /old_locus_tag="BSU02890"
     CDS             294748..295329
                     /gene="yceD"
                     /locus_tag="BSU_02900"
                     /old_locus_tag="BSU02900"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735, 24366250;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress adaptation protein (tellurite
                     resistance)"
                     /protein_id="NP_388172.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02900"
                     /db_xref="EnsemblGenomes-Tr:CAB12084"
                     /db_xref="GOA:P80875"
                     /db_xref="InterPro:IPR003325"
                     /db_xref="SubtiList:BG12768"
                     /db_xref="UniProtKB/Swiss-Prot:P80875"
                     /translation="MTISLAKGQKVDLTKTNPGLSKVVVGLGWDTNKYDGGHDFDLDS
                     SVFLLDAAGKCASPNDFIFYNQLEGGNGSVVHSGDNLTGAGEGDDENVKVNLSAVPAN
                     IDKISFVITIHDAEARSQNFGQVSNAFVRIVNEETNEELIRYDLAEDFSIETAIIAGE
                     LYRHNGEWKFSAIGSGYQGGLARIATDYGLQVG*"
     gene            294748..295329
                     /gene="yceD"
                     /locus_tag="BSU_02900"
                     /old_locus_tag="BSU02900"
     CDS             295364..295942
                     /gene="yceE"
                     /locus_tag="BSU_02910"
                     /old_locus_tag="BSU02910"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735, 24366250,
                     25355936; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress adaptation protein (tellurite
                     resistance)"
                     /protein_id="NP_388173.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02910"
                     /db_xref="EnsemblGenomes-Tr:CAB12085"
                     /db_xref="GOA:O34384"
                     /db_xref="InterPro:IPR003325"
                     /db_xref="SubtiList:BG12769"
                     /db_xref="UniProtKB/Swiss-Prot:O34384"
                     /translation="MAIQLSKGQRIDLTKTNPGLTKAVIGLGWDTNKYSGGHDFDLDA
                     SAFLVDAHDNCVNDLDFVFYNNLEHPSGGVIHTGDNRTGEGDGDDEQIIVDFSKIPAH
                     IEKIGITVTIHDAEARSQNFGQVSNAFVRVVDEETQNELLRFDLGEDFSIETAVVVCE
                     LYRHGGEWKFNAIGSGFSGGLAALCRNYGLQV*"
     gene            295364..295942
                     /gene="yceE"
                     /locus_tag="BSU_02910"
                     /old_locus_tag="BSU02910"
     CDS             295993..296766
                     /gene="yceF"
                     /locus_tag="BSU_02920"
                     /old_locus_tag="BSU02920"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22720735, 24366250; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress adaptation transporter
                     (tellurite resistance)"
                     /protein_id="NP_388174.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02920"
                     /db_xref="EnsemblGenomes-Tr:CAB12086"
                     /db_xref="GOA:O34447"
                     /db_xref="InterPro:IPR005496"
                     /db_xref="InterPro:IPR022493"
                     /db_xref="SubtiList:BG12770"
                     /db_xref="UniProtKB/Swiss-Prot:O34447"
                     /translation="MDFLHHILSTYASFFDWKMWGEVLTDPVSWGLIGSLVVLEGLLS
                     ADNALVLAVMVKHLPEKQRKKALTYGLFGAYIFRFIFIGLGMLLIKFWWIKVLGALYL
                     AWLVIKHFWIGEKEEEADGMKKNSWMVRTFGIFWATVISVELMDLAFSVDSILAAFAV
                     SEKVWVLLIGGMLGILMMRTVAKVFLVLIDKIPELENTAFVLIGIIALKMAGSAFHYE
                     MPHSVFFIIIIAAFAVTLIIHYINKQKQVREQTAASKEE*"
     gene            295993..296766
                     /gene="yceF"
                     /locus_tag="BSU_02920"
                     /old_locus_tag="BSU02920"
     downshifts      296753
                     /Source="Nicolas_upshifts"
                     /id="D121"
                     /incds=0
                     /nref=46
                     /ntot=239
                     /MaxReadThrough="6.82513"
                     /MaxDrop="4.0674"
                     /score="4.0495978"
                     /energy="-8.2"
                     /TU="U212"
                     /idTUdmin="U210"
                     /TUdmin=2728
                     /isTUend="FALSE"
     CDS             296851..298464
                     /gene="yceG"
                     /locus_tag="BSU_02930"
                     /old_locus_tag="BSU02930"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 24366250; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxic compound adaptation protein
                     (tellurite resistance)"
                     /protein_id="NP_388175.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02930"
                     /db_xref="EnsemblGenomes-Tr:CAB12087"
                     /db_xref="InterPro:IPR025647"
                     /db_xref="SubtiList:BG12771"
                     /db_xref="UniProtKB/Swiss-Prot:O34809"
                     /translation="MRQEELTIHKALPADGDWKSLLFQPLPERDHYETAQGLSFSRLA
                     GQILGTPIDETDYYNELYELSVNDRITILSETLDKTIEPETFQKLQHIHSINQKEKGL
                     SVSRFVAFLDGEKLIAKHSNPLMHRHLRKALMTLLHTFADSHEKGLNHPDFRRVLLDV
                     SKFSLNHLNPWLEKTDIEREMPKVVWYGDATKSQLYFLYYLMLVGCDVLLFHPAGTDQ
                     LALVDPKQELGFTEKLPDVSELQPFPKEKPDRKSTVAYRSTKEIEHVLNHEESMLYKP
                     WQFRDHTPVSVTLKTTYDELFLITKERAFIRPNFKADKHSIEIPNVFAKIMGVSKDNK
                     EYWNRLHTLADYQETEMVRSFPFTEEIKSNYQFHYSHALDQEGNIDPDKLMASNVWQY
                     KQLPAGVQTAIAKTISRMCRYPRLKALHQEQVKDVQIYLFKQTTNLPANLLKLIQMFD
                     YAQTVPKLVLYHTEMSGGLTRSDAAALLFLNEIGIDIIIYNPPGHQDIEQFIEEDQYD
                     IHWLDDMVFQQDYKEPSLVKRLFRTITQK*"
     gene            296851..298464
                     /gene="yceG"
                     /locus_tag="BSU_02930"
                     /old_locus_tag="BSU02930"
     CDS             298480..299571
                     /gene="yceH"
                     /locus_tag="BSU_02940"
                     /old_locus_tag="BSU02940"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735, 24366250;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative reactive oxygen species resistance
                     protein"
                     /protein_id="NP_388176.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02940"
                     /db_xref="EnsemblGenomes-Tr:CAB12088"
                     /db_xref="InterPro:IPR008863"
                     /db_xref="SubtiList:BG12772"
                     /db_xref="UniProtKB/Swiss-Prot:O34833"
                     /translation="MTTENQNPLVLDKNEEISQQKADDIRLQLRQEPEVKRLAQQIDV
                     KNQMELLEYGKEPAVEISKFSDRILGMMKTTSVTDSGTMLTQLGKIMDRFDKNDFDEP
                     KGLMAKIFKRGGSMIEKIFKKYQTLGGEIEKIHVEISKYKDEMTKTNYTLDEMYENNI
                     KYYMELEKYVVAGQMKLEEMQSILPSYEEKAASGNQLAQMQLDTLRNGIQALEERVYD
                     LDMARMVALQTAPQIRLLQRGNAKLIGKINSAFIITIPIFKNGIIQAVTVKRQKLVAD
                     SMSELDRRTNEMLKRNAENISSQSVEIARMAGRPSIDIETIESSWNTIVSGMQETKQI
                     EEENKRLREDGARRIAQLQDNIKKAALQQ*"
     gene            298480..299571
                     /gene="yceH"
                     /locus_tag="BSU_02940"
                     /old_locus_tag="BSU02940"
     downshifts      299545
                     /Source="Nicolas_upshifts"
                     /id="D122"
                     /incds=0
                     /nref=85
                     /ntot=228
                     /MaxReadThrough="4.46836"
                     /MaxDrop="4.05585"
                     /score="-6.59172775"
                     /energy="-17.5"
                     /TU="U212"
                     /idTUdmin="U212"
                     /TUdmin="-1322"
                     /isTUend="FALSE"
     promotor_-35    299625..299632
                     /Source="Nicolas_upshift_promotors"
                     /id="U213"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.998001998001998"
                     /xcortree=2427
                     /SigmaFactorBS="aagcggggtatttcaattacatcatttagtTAATGACAatgt
                     gtaaagacagGTGTAAACTTAAACGGTAATcattttgcatatcagaggtgttggcaat
                     g"
                     /listShort="yceI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    299647..299666
                     /Source="Nicolas_upshift_promotors"
                     /id="U213"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.998001998001998"
                     /xcortree=2427
                     /SigmaFactorBS="aagcggggtatttcaattacatcatttagtTAATGACAatgt
                     gtaaagacagGTGTAAACTTAAACGGTAATcattttgcatatcagaggtgttggcaat
                     g"
                     /listShort="yceI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        299655
                     /Source="Nicolas_upshifts"
                     /id="U213"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.998001998001998"
                     /xcortree=2427
                     /SigmaFactorBS="aagcggggtatttcaattacatcatttagtTAATGACAatgt
                     gtaaagacagGTGTAAACTTAAACGGTAATcattttgcatatcagaggtgttggcaat
                     g"
                     /listShort="yceI"
                     /GFF_Attribute="listLong"
     CDS             299693..300895
                     /gene="niaP"
                     /locus_tag="BSU_02950"
                     /old_locus_tag="BSU02950"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 18276644, 21953179"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     18276644, 21953179; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="niacin permease"
                     /protein_id="NP_388177.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02950"
                     /db_xref="EnsemblGenomes-Tr:CAB12089"
                     /db_xref="GOA:O34691"
                     /db_xref="InterPro:IPR005829"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12773"
                     /db_xref="UniProtKB/Swiss-Prot:O34691"
                     /translation="MGKQQPISQRKLLGVAGLGWLFDAMDVGILSFIIAALHVEWNLS
                     PEEMKWIGSVNSIGMAAGAFLFGLLADRIGRKKVFIITLLCFSIGSGISAFVTSLSAF
                     LILRFVIGMGLGGELPVASTLVSEAVVPEKRGRVIVLLESFWAVGWLAAALISYFVIP
                     SFGWQAALLLTALTAFYALYLRTSLPDSPKYESLSAKKRSMWENVKSVWARQYIRPTV
                     MLSIVWFCVVFSYYGMFLWLPSVMLLKGFSMIQSFEYVLLMTLAQLPGYFSAAWLIEK
                     AGRKWILVVYLIGTAGSAYFFGTADSLSLLLTAGVLLSFFNLGAWGVLYAYTPEQYPT
                     AIRATGSGTTAAFGRIGGIFGPLLVGTLAARHISFSVIFSIFCIAILLAVACILIMGK
                     ETKQTELE*"
     gene            299693..300895
                     /gene="niaP"
                     /locus_tag="BSU_02950"
                     /old_locus_tag="BSU02950"
     downshifts      300875
                     /Source="Nicolas_upshifts"
                     /id="D123"
                     /incds=0
                     /nref=8
                     /ntot=184
                     /MaxReadThrough="4.1968"
                     /MaxDrop="3.48367"
                     /score="13.0427769"
                     /energy="-10.6"
                     /TU="U213"
                     /idTUdmin="U212"
                     /TUdmin=8
                     /isTUend="TRUE"
     CDS             complement(301148..302320)
                     /gene="yceJ"
                     /locus_tag="BSU_02960"
                     /old_locus_tag="BSU02960"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative carbohydrate transporter (possibly
                     exporter)"
                     /protein_id="NP_388178.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02960"
                     /db_xref="EnsemblGenomes-Tr:CAB12090"
                     /db_xref="GOA:O34724"
                     /db_xref="InterPro:IPR001958"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12774"
                     /db_xref="UniProtKB/Swiss-Prot:O34724"
                     /translation="MNRIWLFFSVMFVIGTDTFLLSPLLPLLQDQFHVSTDLSGWMVS
                     AYALGYALFAFIAGPISDRLNRKTVMLWGLAGFIVSTFLCGIAPSFAAMCLFRFAAGV
                     SAAFVTPQIWASIPVIVQPSQIIKGMGIATAGLAASQMLGLPIGGFLASFTWHTPFFV
                     LSACSLILLLILAAVMPGIRPSEPLARPSIVNPYRELFSLPKTSVILLAYFLFQTGNF
                     ASFSFLGTWLSADYHLTVSQIGAAMLVLGLGNMLGSLIGSRVSEKLGMFKTLISGMLL
                     MGALYFALPFFPNLFLVEAGFFLTFFTAGIIFPLMMGVFQSIAPNARGTIASLSNAAM
                     YAGTTVGTSIAGFLYQSTQHFGAVTGFTAILFILSMTLYQTISKTGKRQSTARAQL*"
     gene            complement(301148..302320)
                     /gene="yceJ"
                     /locus_tag="BSU_02960"
                     /old_locus_tag="BSU02960"
     downshifts      complement(301163)
                     /Source="Nicolas_upshifts"
                     /id="D124"
                     /incds=0
                     /nref=1
                     /ntot=7
                     /MaxReadThrough="2.6211"
                     /MaxDrop="2.7452"
                     /score="9.21991741"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U214"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(302389..302691)
                     /gene="yceK"
                     /locus_tag="BSU_02970"
                     /old_locus_tag="BSU02970"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (ArsR
                     family)"
                     /protein_id="NP_388179.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02970"
                     /db_xref="EnsemblGenomes-Tr:CAB12091"
                     /db_xref="GOA:O34464"
                     /db_xref="InterPro:IPR001845"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12775"
                     /db_xref="UniProtKB/Swiss-Prot:O34464"
                     /translation="MYYSFMTMKQSDDQIRAQIFKALSDESRLAIIRTLYVSGKELSC
                     GEVGEKCNIVKTTASYHFKTLREAGLTATRKDSRTKYVSLREDTFQTYLPGFLETL*"
     gene            complement(302389..302691)
                     /gene="yceK"
                     /locus_tag="BSU_02970"
                     /old_locus_tag="BSU02970"
     downshifts      complement(302417)
                     /Source="Nicolas_upshifts"
                     /id="D125"
                     /incds=0
                     /nref=221
                     /ntot=261
                     /MaxReadThrough="5.67096"
                     /MaxDrop="6.89889"
                     /score="2.01231069"
                     /energy="-4.8"
                     /TU="U214"
                     /idTUdmin="U214"
                     /TUdmin="-1254"
                     /isTUend="FALSE"
     promotor_-10    complement(302674..302693)
                     /Source="Nicolas_upshift_promotors"
                     /id="U214"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig="0.999000999001"
                     /xcortree=635
                     /SigmaFactorBS="ccttcctcttatgacttcctgctcctttactggaaaaataAG
                     TTGCTttttcaacacccaTTATGTATTATAGTTTCATGactatgaaacaatcagatga
                     t"
                     /listShort="yceK, yceJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(302693)
                     /Source="Nicolas_upshifts"
                     /id="U214"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig="0.999000999001"
                     /xcortree=635
                     /SigmaFactorBS="ccttcctcttatgacttcctgctcctttactggaaaaataAG
                     TTGCTttttcaacacccaTTATGTATTATAGTTTCATGactatgaaacaatcagatga
                     t"
                     /listShort="yceK, yceJ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(302707..302713)
                     /Source="Nicolas_upshift_promotors"
                     /id="U214"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.455544455544456"
                     /psig="0.999000999001"
                     /xcortree=635
                     /SigmaFactorBS="ccttcctcttatgacttcctgctcctttactggaaaaataAG
                     TTGCTttttcaacacccaTTATGTATTATAGTTTCATGactatgaaacaatcagatga
                     t"
                     /listShort="yceK, yceJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    302940..302959
                     /Source="Nicolas_upshift_promotors"
                     /id="U215"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.99100899100899"
                     /xcortree=2422
                     /SigmaFactorBS="gtttataaagaaatggtacagaataaaagagaatatgctgtt
                     tgtgtgggaagttacataAATGTTACGGTAATAAAGATtgcttaatatggagggaaaa
                     t"
                     /listShort="opuAA, opuAB, opuAC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        302940
                     /Source="Nicolas_upshifts"
                     /id="U215"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.99100899100899"
                     /xcortree=2422
                     /SigmaFactorBS="gtttataaagaaatggtacagaataaaagagaatatgctgtt
                     tgtgtgggaagttacataAATGTTACGGTAATAAAGATtgcttaatatggagggaaaa
                     t"
                     /listShort="opuAA, opuAB, opuAC"
                     /GFF_Attribute="listLong"
     CDS             302981..304237
                     /gene="opuAA"
                     /locus_tag="BSU_02980"
                     /old_locus_tag="BSU02980"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7622480, 16225868, 16645306, 25012968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7622480, 16225868,
                     16645306, 25012968; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="L-proline betaine and betonicine ABC
                     transporter(ATP-binding protein)"
                     /protein_id="NP_388180.2"
                     /db_xref="EnsemblGenomes-Gn:BSU02980"
                     /db_xref="EnsemblGenomes-Tr:CAB12092"
                     /db_xref="GOA:P46920"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR005892"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11370"
                     /db_xref="UniProtKB/Swiss-Prot:P46920"
                     /translation="MSVDEKPIKIKVEKVSKIFGKQTKKAVQMLANGKTKKEILKATG
                     STVGVNQADFEVYDGEIFVIMGLSGSGKSTLVRMLNRLIEPTAGNIYIDGDMITNMSK
                     DQLREVRRKKISMVFQKFALFPHRTILENTEYGLELQGVDKQERQQKALESLKLVGLE
                     GFEHQYPDQLSGGMQQRVGLARALTNDPDILLMDEAFSALDPLIRKDMQDELLDLHDN
                     VGKTIIFITHDLDEALRIGDRIVLMKDGNIVQIGTPEEILMNPSNEYVEKFVEDVDLS
                     KVLTAGHIMKRAETVRIDKGPRVALTLMKNLGISSIYAVDKQKKLLGVIYASDAKKAA
                     ESDLSLQDILNTEFTTVPENTYLTEIFDVVSDANIPIAVVDEKQRMKGIVVRGALIGA
                     LAGNNEYINAEGTNEQTQDPSAQEVK*"
     gene            302981..304237
                     /gene="opuAA"
                     /locus_tag="BSU_02980"
                     /old_locus_tag="BSU02980"
     downshifts      complement(302989)
                     /Source="Nicolas_upshifts"
                     /id="D126"
                     /incds=0
                     /nref=108
                     /ntot=175
                     /MaxReadThrough="2.83797"
                     /MaxDrop="5.18503"
                     /score="2.01231069"
                     /energy="-4.8"
                     /TU="NA"
                     /idTUdmin="U214"
                     /TUdmin="-1826"
                     /isTUend="FALSE"
     CDS             304239..305087
                     /gene="opuAB"
                     /locus_tag="BSU_02990"
                     /old_locus_tag="BSU02990"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8752321, 15849754, 16225868, 16645306, 16850406,
                     25012968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8752321, 15849754,
                     16225868, 16645306, 16850406, 25012968; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="L-proline betaine and betonicine ABC
                     transporter(permease)"
                     /protein_id="NP_388181.1"
                     /db_xref="EnsemblGenomes-Gn:BSU02990"
                     /db_xref="EnsemblGenomes-Tr:CAB12093"
                     /db_xref="GOA:P46921"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11371"
                     /db_xref="UniProtKB/Swiss-Prot:P46921"
                     /translation="MDRLPRIPLADIIDRFVDWITMTFGGFFDGIANGLAAFVNGIVT
                     GLGFIPSILLTIIFAALAWWISTRGIALFTLIGFLLIDYLGYWDPMLQTLALVLTSVI
                     ISIVVGVPIGIWASQKETVRRIVTPILDLMQTMPAFVYLLPAIFFFNIGVVPGVVASV
                     IFAMPPTIRMTVLGIKQVPADLIEATEAFGSTTAQRLFKVQLPLATKTILAGINQSIM
                     LALSMVVIAAMVGAPGLGSEVYSAVTQLKTGVGVEAGIAIVIVAITLDRITQNIKVKK
                     KSRGNA*"
     gene            304239..305087
                     /gene="opuAB"
                     /locus_tag="BSU_02990"
                     /old_locus_tag="BSU02990"
     CDS             305087..305968
                     /gene="opuAC"
                     /locus_tag="BSU_03000"
                     /old_locus_tag="BSU03000"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7622480, 16225868, 16645306, 25012968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7622480, 16225868,
                     16645306, 25012968; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="L-proline betaine and betonicine ABC
                     transporterABC transporter (glycine betaine-binding
                     lipoprotein)"
                     /protein_id="NP_388182.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03000"
                     /db_xref="EnsemblGenomes-Tr:CAB12094"
                     /db_xref="GOA:P46922"
                     /db_xref="InterPro:IPR007210"
                     /db_xref="PDB:2B4L"
                     /db_xref="PDB:2B4M"
                     /db_xref="PDB:3CHG"
                     /db_xref="SubtiList:BG11372"
                     /db_xref="UniProtKB/Swiss-Prot:P46922"
                     /translation="MLKKIIGIGVSAMLALSLAACGSENDENASAAEQVNKTIIGIDP
                     GSGIMSLTDKAMKDYDLNDWTLISASSAAMTATLKKSYDRKKPIIITGWTPHWMFSRY
                     KLKYLDDPKQSYGSAEEIHTITRKGFSKEQPNAAKLLSQFKWTQDEMGEIMIKVEEGE
                     KPAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINLAYVAWDSEIASTNVIGKVLEDLGY
                     EVTLTQVEAGPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDIGTSMTGVKMGL
                     VVPQYMKNVNSIEDLKK*"
     gene            305087..305968
                     /gene="opuAC"
                     /locus_tag="BSU_03000"
                     /old_locus_tag="BSU03000"
     downshifts      305949
                     /Source="Nicolas_upshifts"
                     /id="D127"
                     /incds=0
                     /nref=254
                     /ntot=269
                     /MaxReadThrough="0.74967"
                     /MaxDrop="8.21394"
                     /score="33.6263027"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U215"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(305981)
                     /Source="Nicolas_upshifts"
                     /id="D128"
                     /incds=0
                     /nref=2
                     /ntot=62
                     /MaxReadThrough="4.29566"
                     /MaxDrop="3.9514"
                     /score="29.8489328"
                     /energy="-12.2"
                     /TU="U216"
                     /idTUdmin="U216"
                     /TUdmin="-220"
                     /isTUend="FALSE"
     CDS             complement(306006..307157)
                     /gene="amhX"
                     /locus_tag="BSU_03010"
                     /old_locus_tag="BSU03010"
                     /EC_number="3.5.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8768514; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amidohydrolase"
                     /protein_id="NP_388183.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03010"
                     /db_xref="EnsemblGenomes-Tr:CAB12095"
                     /db_xref="GOA:P54983"
                     /db_xref="InterPro:IPR002933"
                     /db_xref="InterPro:IPR011650"
                     /db_xref="InterPro:IPR017439"
                     /db_xref="InterPro:IPR036264"
                     /db_xref="SubtiList:BG11789"
                     /db_xref="UniProtKB/Swiss-Prot:P54983"
                     /translation="MQKLSEEMKQTIMDIFEHLHANPEVSWKEYETTSFLKQKLEDLG
                     CRTRTFSDCTGVVGEIGSGSPVVAVRADIDALWQEVNGTFRANHSCGHDSHMTMALGT
                     LMLLKKQPELPKGTIRFIFQPAEEKGGGALKMIEEGVLDDIDYLYGVHVRPIQETQNG
                     RCAPSILHGSSQHIEGTIIGEEAHGARPHLGKNSIEIAAFLVHKLGLIHIDPQIPHTV
                     KMTKLQAGGESSNIIPGKASFSLDLRAQTNEAMEALIAETERACEAAAAAFGAKIELH
                     KEHSLPAATQNKEAEAIMAEAITEIIGAERLDDPLVTTGGEDFHFYAVKVPNLKTTML
                     GLGCGLQPGLHHPHMTFDRNAMFTGIHILANAVLKTFQKAESLAAANAS*"
     gene            complement(306006..307157)
                     /gene="amhX"
                     /locus_tag="BSU_03010"
                     /old_locus_tag="BSU03010"
     downshifts      complement(306025)
                     /Source="Nicolas_upshifts"
                     /id="D129"
                     /incds=0
                     /nref=2
                     /ntot=70
                     /MaxReadThrough="4.33606"
                     /MaxDrop="3.5225"
                     /score="29.8489328"
                     /energy="-12.2"
                     /TU="U216"
                     /idTUdmin="U216"
                     /TUdmin="-264"
                     /isTUend="FALSE"
     S_feature       complement(307158..307245)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_325190_325277_c"
                     /HighExp="Etha, T1.30H, M9-stat, T2.30H, S1, T3.30H,
                     T5.0H, T4.0H, Sw, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S107"
     promotor_-35    307213..307220
                     /Source="Nicolas_upshift_promotors"
                     /id="U217"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2902
                     /SigmaFactorBS="atttttaccttctttactttatttaTATTGAAAcaggaagat
                     aggctGTATATAATATAGCACATATtgctactattcagaataattaatattttcaaac
                     a"
                     /listShort="ycgA"
                     /listLong="ycgB, S108, amyE"
                     /label="promotor_-35"
     promotor_-10    complement(307232..307251)
                     /Source="Nicolas_upshift_promotors"
                     /id="U216"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig=1
                     /xcortree=2878
                     /SigmaFactorBS="tttcgatccatcccctctgtttgaaaatattaattATTCTGA
                     atagtagcaataTGTGCTATATTATATACAGCctatcttcctgtttcaatataaataa
                     a"
                     /listShort="S107, amhX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    307235..307254
                     /Source="Nicolas_upshift_promotors"
                     /id="U217"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2902
                     /SigmaFactorBS="atttttaccttctttactttatttaTATTGAAAcaggaagat
                     aggctGTATATAATATAGCACATATtgctactattcagaataattaatattttcaaac
                     a"
                     /listShort="ycgA"
                     /listLong="ycgB, S108, amyE"
                     /label="promotor_-10"
     upshifts        complement(307245)
                     /Source="Nicolas_upshifts"
                     /id="U216"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig=1
                     /xcortree=2878
                     /SigmaFactorBS="tttcgatccatcccctctgtttgaaaatattaattATTCTGA
                     atagtagcaataTGTGCTATATTATATACAGCctatcttcctgtttcaatataaataa
                     a"
                     /listShort="S107, amhX"
                     /GFF_Attribute="listLong"
     upshifts        307248
                     /Source="Nicolas_upshifts"
                     /id="U217"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2902
                     /SigmaFactorBS="atttttaccttctttactttatttaTATTGAAAcaggaagat
                     aggctGTATATAATATAGCACATATtgctactattcagaataattaatattttcaaac
                     a"
                     /listShort="ycgA"
                     /listLong="ycgB, S108, amyE"
     promotor_-35    complement(307264..307270)
                     /Source="Nicolas_upshift_promotors"
                     /id="U216"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig=1
                     /xcortree=2878
                     /SigmaFactorBS="tttcgatccatcccctctgtttgaaaatattaattATTCTGA
                     atagtagcaataTGTGCTATATTATATACAGCctatcttcctgtttcaatataaataa
                     a"
                     /listShort="S107, amhX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             307307..308740
                     /gene="ycgA"
                     /locus_tag="BSU_03020"
                     /old_locus_tag="BSU03020"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     21747963, 21764931; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative branched chain amino acid permease"
                     /protein_id="NP_388184.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03020"
                     /db_xref="EnsemblGenomes-Tr:CAB12096"
                     /db_xref="GOA:P55908"
                     /db_xref="InterPro:IPR018385"
                     /db_xref="SubtiList:BG11999"
                     /db_xref="UniProtKB/Swiss-Prot:P55908"
                     /translation="MSMPAAETQPKKKRMTFKMPDAYVLLFMIAFICAIASYIVPAGE
                     FDRVTKGDVTTAVPGSYHSIEQSPVRLISFFTSLQDGMVGSAPIIFLILFTGGTIAIL
                     EKTGAINGLIYNVISKFRTKQLLFICIVGALFSILGTTGIVVNSVIGFIPIGLIVARS
                     LKWDAVAGAAVIYIGCYAGFNSTILSPSPLGLSQSIAELPLFSGIGLRVVIYICFLLS
                     SIIYIYLYTRKLKKSKDASVLGTDWFPAAGMGEAGKEEDQSVPFTVRHKLILAVAGLS
                     LVGFLYGALKLGWSDSQMAATFIFISVLAGLIGGLAANDIAKTFITGCQSLVYGALIV
                     GMARSISVILENGKLLDTVVNALASLLDGFSPIAGAIGMYIASALLHFLISSGSGEAV
                     VFIPILAPLADLMGITRQVAVEAVMLGEGVVNCVNPTSGVLMAVLAASGIPYVKWLRF
                     MVPLALIWFLIGLVFIVIGVMINWGPF*"
     gene            307307..308740
                     /gene="ycgA"
                     /locus_tag="BSU_03020"
                     /old_locus_tag="BSU03020"
     promotor_-35    308045..308053
                     /Source="Nicolas_upshift_promotors"
                     /id="U218"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=498
                     /SigmaFactorBS="ggaacagattggttccctgcgGCAGGAATGggcgaagccggT
                     AAAGAAGAAGATCAGTCAgtgccgtttaccgttcgccataagctgattttggctgtgg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    308065..308083
                     /Source="Nicolas_upshift_promotors"
                     /id="U218"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=498
                     /SigmaFactorBS="ggaacagattggttccctgcgGCAGGAATGggcgaagccggT
                     AAAGAAGAAGATCAGTCAgtgccgtttaccgttcgccataagctgattttggctgtgg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        308084
                     /Source="Nicolas_upshifts"
                     /id="U218"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=498
                     /SigmaFactorBS="ggaacagattggttccctgcgGCAGGAATGggcgaagccggT
                     AAAGAAGAAGATCAGTCAgtgccgtttaccgttcgccataagctgattttggctgtgg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      308722
                     /Source="Nicolas_upshifts"
                     /id="D130"
                     /incds=0
                     /nref=1
                     /ntot=74
                     /MaxReadThrough="3.53497"
                     /MaxDrop="3.31444"
                     /score="12.0135493"
                     /energy="-15.6"
                     /TU="U217"
                     /idTUdmin="U218"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    308783..308790
                     /Source="Nicolas_upshift_promotors"
                     /id="U219"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=1929
                     /SigmaFactorBS="ccggcttgtacggcgggcttttgagttatTCATTGCAgaagc
                     gcaggctgtTATTGTAACATGTAAGCCATaagccattcgtaaaagtgcgggaggaagg
                     t"
                     /listShort="ycgB, S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    308805..308824
                     /Source="Nicolas_upshift_promotors"
                     /id="U219"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=1929
                     /SigmaFactorBS="ccggcttgtacggcgggcttttgagttatTCATTGCAgaagc
                     gcaggctgtTATTGTAACATGTAAGCCATaagccattcgtaaaagtgcgggaggaagg
                     t"
                     /listShort="ycgB, S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        308814
                     /Source="Nicolas_upshifts"
                     /id="U219"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=1929
                     /SigmaFactorBS="ccggcttgtacggcgggcttttgagttatTCATTGCAgaagc
                     gcaggctgtTATTGTAACATGTAAGCCATaagccattcgtaaaagtgcgggaggaagg
                     t"
                     /listShort="ycgB, S108, amyE"
                     /GFF_Attribute="listLong"
     CDS             308856..309437
                     /gene="ycgB"
                     /locus_tag="BSU_03030"
                     /old_locus_tag="BSU03030"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15849754, 16850406, 22720735;
                     Producttype m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein of
                     unknown function"
                     /protein_id="NP_388185.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03030"
                     /db_xref="EnsemblGenomes-Tr:CAB12097"
                     /db_xref="SubtiList:BG12000"
                     /db_xref="UniProtKB/Swiss-Prot:P55909"
                     /translation="MNNLRNRLSGVNGKNKRVKEKEQKIWSEIGMIAGAFALLDVIIR
                     GIMFEFPFKEWAASLVFLFIIILYYCIRAAASGMLMPRIDTKEELQKRVKQQRIESIA
                     VAFAVVVLTMYDRGIPHTFFAWLKMILLFIVCGGVLFLLRYVIVKLAYRRAVKEEIKK
                     KSSFLFGKRGKRSQFRAAFFIGTLICIHSAKLF*"
     gene            308856..309437
                     /gene="ycgB"
                     /locus_tag="BSU_03030"
                     /old_locus_tag="BSU03030"
     upshifts        309250
                     /Source="Nicolas_upshifts"
                     /id="U220"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.288711288711289"
                     /psig="0.241758241758242"
                     /xcortree=1550
                     /SigmaFactorBS="tgtacgacagggggattccccatacattcttcgcttggctga
                     aaatgattcttctttttatcgtCTGCGgcggcgttctgtttctgcttcggtatgtgat
                     t"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
     misc_feature    309254..309258
                     /Source="Nicolas_upshift_promotors"
                     /id="U220"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.288711288711289"
                     /psig="0.241758241758242"
                     /xcortree=1550
                     /SigmaFactorBS="tgtacgacagggggattccccatacattcttcgcttggctga
                     aaatgattcttctttttatcgtCTGCGgcggcgttctgtttctgcttcggtatgtgat
                     t"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-35    309413..309420
                     /Source="Nicolas_upshift_promotors"
                     /id="U221"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.892107892107892"
                     /psig="0.999000999001"
                     /xcortree=365
                     /SigmaFactorBS="ctttttttataggaacattgatttgTATTCACTctgccaagt
                     tgtttTGATAGAGTGATTGTGATAAttttaaatgtaagcgttaacaaaattctccagt
                     c"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    309435..309454
                     /Source="Nicolas_upshift_promotors"
                     /id="U221"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.892107892107892"
                     /psig="0.999000999001"
                     /xcortree=365
                     /SigmaFactorBS="ctttttttataggaacattgatttgTATTCACTctgccaagt
                     tgtttTGATAGAGTGATTGTGATAAttttaaatgtaagcgttaacaaaattctccagt
                     c"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       309448..309585
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_327480_327617"
                     /HighExp="BC, M0t90, M40t90, S2, M9-stat, T4.0H, Sw,
                     T3.30H, Lbtran, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, Sig-, SigA"
                     /TUshortPSig="0.999, 0.242, 0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S108"
     upshifts        309448
                     /Source="Nicolas_upshifts"
                     /id="U221"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.892107892107892"
                     /psig="0.999000999001"
                     /xcortree=365
                     /SigmaFactorBS="ctttttttataggaacattgatttgTATTCACTctgccaagt
                     tgtttTGATAGAGTGATTGTGATAAttttaaatgtaagcgttaacaaaattctccagt
                     c"
                     /listShort="S108, amyE"
                     /GFF_Attribute="listLong"
     CDS             309586..311565
                     /gene="amyE"
                     /locus_tag="BSU_03040"
                     /old_locus_tag="BSU03040"
                     /EC_number="3.2.1.1"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3117969, 9353930"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3117969, 9353930; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="NP_388186.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03040"
                     /db_xref="EnsemblGenomes-Tr:CAB12098"
                     /db_xref="GOA:P00691"
                     /db_xref="InterPro:IPR006046"
                     /db_xref="InterPro:IPR006047"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR031319"
                     /db_xref="InterPro:IPR031965"
                     /db_xref="PDB:1BAG"
                     /db_xref="PDB:1UA7"
                     /db_xref="SubtiList:BG10473"
                     /db_xref="UniProtKB/Swiss-Prot:P00691"
                     /translation="MFAKRFKTSLLPLFAGFLLLFHLVLAGPAAASAETANKSNELTA
                     PSIKSGTILHAWNWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWL
                     YQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTSDYAAISNEVKSIPN
                     WTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLDRALNDGADGFRFDA
                     AKHIELPDDGSYGSQFWPNITNTSAEFQYGEILQDSASRDAAYANYMDVTASNYGHSI
                     RSALKNRNLGVSNISHYASDVSADKLVTWVESHDTYANDDEESTWMSDDDIRLGWAVI
                     ASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFEDQAITAVNRFHNVMAGQPEE
                     LSNPNGNNQIFMNQRGSHGVVLANAGSSSVSINTATKLPDGRYDNKAGAGSFQVNDGK
                     LTGTINARSVAVLYPDDIAKAPHVFLENYKTGVTHSFNDQLTITLRADANTTKAVYQI
                     NNGPETAFKDGDQFTIGKGDPFGKTYTIMLKGTNSDGVTRTEKYSFVKRDPASAKTIG
                     YQNPNHWSQVNAYIYKHDGSRVIELTGSWPGKPMTKNADGIYTLTLPADTDTTNAKVI
                     FNNGSAQVPGQNQPGFDYVLNGLYNDSGLSGSLPH*"
     gene            309586..311565
                     /gene="amyE"
                     /locus_tag="BSU_03040"
                     /old_locus_tag="BSU03040"
     downshifts      311579
                     /Source="Nicolas_upshifts"
                     /id="D131"
                     /incds=0
                     /nref=57
                     /ntot=131
                     /MaxReadThrough="1.64783"
                     /MaxDrop="6.55823"
                     /score="-8.82332571"
                     /energy="-3.4"
                     /TU="U221"
                     /idTUdmin="U219"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    311645..311652
                     /Source="Nicolas_upshift_promotors"
                     /id="U222"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig=1
                     /xcortree=1599
                     /SigmaFactorBS="caatgatggtttcttttttgttcataaatcagacaaaacttt
                     tCTCTTGCAaaagtttgtgaagTGTTGCACAATATAAATGTGaaatacttcacaaaca
                     a"
                     /listShort="ldh, lctP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        311662
                     /Source="Nicolas_upshifts"
                     /id="U222"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig=1
                     /xcortree=1599
                     /SigmaFactorBS="caatgatggtttcttttttgttcataaatcagacaaaacttt
                     tCTCTTGCAaaagtttgtgaagTGTTGCACAATATAAATGTGaaatacttcacaaaca
                     a"
                     /listShort="ldh, lctP"
                     /GFF_Attribute="listLong"
     promotor_-10    311666..311685
                     /Source="Nicolas_upshift_promotors"
                     /id="U222"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig=1
                     /xcortree=1599
                     /SigmaFactorBS="caatgatggtttcttttttgttcataaatcagacaaaacttt
                     tCTCTTGCAaaagtttgtgaagTGTTGCACAATATAAATGTGaaatacttcacaaaca
                     a"
                     /listShort="ldh, lctP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             311742..312707
                     /gene="lctE"
                     /locus_tag="BSU_03050"
                     /old_locus_tag="BSU03050"
                     /EC_number="1.1.1.27"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10809684, 16207915, 19383131"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10809684, 16207915,
                     19383131; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="NP_388187.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03050"
                     /db_xref="EnsemblGenomes-Tr:CAB12099"
                     /db_xref="GOA:P13714"
                     /db_xref="InterPro:IPR001236"
                     /db_xref="InterPro:IPR001557"
                     /db_xref="InterPro:IPR011304"
                     /db_xref="InterPro:IPR015955"
                     /db_xref="InterPro:IPR018177"
                     /db_xref="InterPro:IPR022383"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:3PQD"
                     /db_xref="PDB:3PQE"
                     /db_xref="PDB:3PQF"
                     /db_xref="SubtiList:BG19003"
                     /db_xref="UniProtKB/Swiss-Prot:P13714"
                     /translation="MMNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKA
                     MGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKI
                     FKGIVSEVMASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFML
                     SEYFGAAPQNVHAHIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDD
                     VKNAAYHIIEKKGATYYGVAMSLARITKAILHNENSILTVSTYLDGQYGADDVYIGVP
                     AVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNILKPHFAEQKVN*"
     gene            311742..312707
                     /gene="lctE"
                     /locus_tag="BSU_03050"
                     /old_locus_tag="BSU03050"
     CDS             312739..314364
                     /gene="lctP"
                     /locus_tag="BSU_03060"
                     /old_locus_tag="BSU03060"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10809684, 15849754, 16428414, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10809684, 15849754,
                     16428414, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="NP_388188.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03060"
                     /db_xref="EnsemblGenomes-Tr:CAB12100"
                     /db_xref="GOA:P55910"
                     /db_xref="InterPro:IPR003804"
                     /db_xref="SubtiList:BG12001"
                     /db_xref="UniProtKB/Swiss-Prot:P55910"
                     /translation="MWEQLYDPFGNEYVSALVALTPILFFLLALTVLKMKGILAAFLT
                     LAVSFFVSVWAFHMPVEKAISSVLLGIGSGLWPIGYIVLMAVWLYKIAVKTGKFTIIR
                     SSIAGISPDQRLQLLLIGFCFNAFLEGAAGFGVPIAISAALLVELGFKPLKAAALCLI
                     ANAASGAFGAIGIPVITGAQIGDLSALELSRTLMWTLPMISFLIPFLLVFLLDRMKGI
                     KQTWPALLVVSGGYTAVQTLTMAVLGPELANILAALFSMGGLALFLRKWQPKEIYREE
                     GAGDAGEKKAYRAADIAKAWSPFYILTAAITIWSLPAFKALFQEGGLLYQSTLLFKMP
                     FLHQQIMKMPPIAPSAMPLDAVFKVDLLSATGTAILAAVIVTGLFSKKFSSRDAFASL
                     KETGKELWVPIMTICFVMGFANLANFAGLSSSIGLALAKTGDLFPFVSPVLGWIGVFI
                     TGSVVSNNALFGHLQVVTGAQIGAGSDLLLAANTAGGVMAKLVSPQSIAIAAAAVGQT
                     GKESKLFKRTVAYSLILLLIICIWTFILARLGV*"
     gene            312739..314364
                     /gene="lctP"
                     /locus_tag="BSU_03060"
                     /old_locus_tag="BSU03060"
     downshifts      312745
                     /Source="Nicolas_upshifts"
                     /id="D132"
                     /incds=0
                     /nref=1
                     /ntot=16
                     /MaxReadThrough="8.56142"
                     /MaxDrop="2.8862"
                     /score="-8.82332571"
                     /energy="-3.4"
                     /TU="U222"
                     /idTUdmin="U221"
                     /TUdmin=1144
                     /isTUend="FALSE"
     downshifts      314351
                     /Source="Nicolas_upshifts"
                     /id="D133"
                     /incds=0
                     /nref=51
                     /ntot=118
                     /MaxReadThrough="2.31168"
                     /MaxDrop="7.73065"
                     /score="39.575264"
                     /energy="-15.6"
                     /TU="NA"
                     /idTUdmin="U222"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(314409..315947)
                     /gene="mdr"
                     /locus_tag="BSU_03070"
                     /old_locus_tag="BSU03070"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9023234, 15489457, 15849754, 16850406, 21690368"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9023234, 15489457,
                     15849754, 16850406, 21690368; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug-efflux transporter"
                     /protein_id="NP_388189.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03070"
                     /db_xref="EnsemblGenomes-Tr:CAB12101"
                     /db_xref="GOA:P96712"
                     /db_xref="InterPro:IPR004638"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12002"
                     /db_xref="UniProtKB/Swiss-Prot:P96712"
                     /translation="MDTTTAKQASTKFVVLGLLLGILMSAMDNTIVATAMGNIVADLG
                     SFDKFAWVTASYMVAVMAGMPIYGKLSDMYGRKRFFLFGLIFFLIGSALCGIAQTMNQ
                     LIIFRAIQGIGGGALLPIAFTIIFDLFPPEKRGKMSGMFGAVFGLSSVLGPLLGAIIT
                     DSISWHWVFYINVPIGALSLFFIIRYYKESLEHRKQKIDWGGAITLVVSIVCLMFALE
                     LGGKTYDWNSIQIIGLFIVFAVFFIAFFIVERKAEEPIISFWMFKNRLFATAQILAFL
                     YGGTFIILAVFIPIFVQAVYGSSATSAGFILTPMMIGSVIGSMIGGIFQTKASFRNLM
                     LISVIAFFIGMLLLSNMTPDTARVWLTVFMMISGFGVGFNFSLLPAASMNDLEPRFRG
                     TANSTNSFLRSFGMTLGVTIFGTVQTNVFTNKLNDAFSGMKGSAGSGAAQNIGDPQEI
                     FQAGTRSQIPDAILNRIIDAMSSSITYVFLLALIPIVLAAVTILFMGKARVKTTAEMT
                     KKAN*"
     gene            complement(314409..315947)
                     /gene="mdr"
                     /locus_tag="BSU_03070"
                     /old_locus_tag="BSU03070"
     downshifts      complement(314427)
                     /Source="Nicolas_upshifts"
                     /id="D134"
                     /incds=0
                     /nref=70
                     /ntot=182
                     /MaxReadThrough="1.04964"
                     /MaxDrop="4.53635"
                     /score="30.8374042"
                     /energy="-15.6"
                     /TU="NA"
                     /idTUdmin="U225"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_no_box complement(315001..315101)
                     /Source="Nicolas_upshift_promotors"
                     /id="U223"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.495504495504495"
                     /psig="0.002997002997003"
                     /xcortree=1728
                     /SigmaFactorBS="attttagcggtatttattccgattttcgttcaggcggtctac
                     ggcagctcggcgacaagcgcgggcttcattctgacgccgatgatgattggatcagtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(315041)
                     /Source="Nicolas_upshifts"
                     /id="U223"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.495504495504495"
                     /psig="0.002997002997003"
                     /xcortree=1728
                     /SigmaFactorBS="attttagcggtatttattccgattttcgttcaggcggtctac
                     ggcagctcggcgacaagcgcgggcttcattctgacgccgatgatgattggatcagtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    315961..315965
                     /Source="Nicolas_upshift_promotors"
                     /id="U224"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.971028971028971"
                     /xcortree=2583
                     /SigmaFactorBS="ttgttgtgtccatttgttctacctccTCTTActtttctatgt
                     aagtTCTGATATCATGATAATAGTttgattgttgaatatctcgattatcaagataaac
                     t"
                     /listShort="ycgE, ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    315981..316000
                     /Source="Nicolas_upshift_promotors"
                     /id="U224"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.971028971028971"
                     /xcortree=2583
                     /SigmaFactorBS="ttgttgtgtccatttgttctacctccTCTTActtttctatgt
                     aagtTCTGATATCATGATAATAGTttgattgttgaatatctcgattatcaagataaac
                     t"
                     /listShort="ycgE, ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        315995
                     /Source="Nicolas_upshifts"
                     /id="U224"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.971028971028971"
                     /xcortree=2583
                     /SigmaFactorBS="ttgttgtgtccatttgttctacctccTCTTActtttctatgt
                     aagtTCTGATATCATGATAATAGTttgattgttgaatatctcgattatcaagataaac
                     t"
                     /listShort="ycgE, ycgF, ycgG"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(316027..316046)
                     /Source="Nicolas_upshift_promotors"
                     /id="U225"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.501498501498502"
                     /psig="0.999000999001"
                     /xcortree=2540
                     /SigmaFactorBS="ccaactcacttctggaatttcttGTTGACAactgacagtcct
                     ccCTATAAAATCGAGTTTATCTtgataatcgagatattcaacaatcaaactattatca
                     t"
                     /listShort="mdr"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(316030)
                     /Source="Nicolas_upshifts"
                     /id="U225"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.501498501498502"
                     /psig="0.999000999001"
                     /xcortree=2540
                     /SigmaFactorBS="ccaactcacttctggaatttcttGTTGACAactgacagtcct
                     ccCTATAAAATCGAGTTTATCTtgataatcgagatattcaacaatcaaactattatca
                     t"
                     /listShort="mdr"
                     /GFF_Attribute="listLong"
     CDS             316060..316524
                     /gene="ycgE"
                     /locus_tag="BSU_03080"
                     /old_locus_tag="BSU03080"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388190.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03080"
                     /db_xref="EnsemblGenomes-Tr:CAB12102"
                     /db_xref="GOA:O31472"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12003"
                     /db_xref="UniProtKB/Swiss-Prot:O31472"
                     /translation="MSTRNSRSELEKTAVQLFRKLGTRTVLFHQAAAQALGLFPTDLK
                     SADILNEAGPMTAGELGKKTGLSTGSVTALVDRLEKAGYVAREKDPNDRRRVVIVPLT
                     ASKKHIKDLFRPLSESTMDLCREYTEEELELIFSFVGKAADIMEEELERLKQ*"
     gene            316060..316524
                     /gene="ycgE"
                     /locus_tag="BSU_03080"
                     /old_locus_tag="BSU03080"
     promotor_-35    complement(316061..316067)
                     /Source="Nicolas_upshift_promotors"
                     /id="U225"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.501498501498502"
                     /psig="0.999000999001"
                     /xcortree=2540
                     /SigmaFactorBS="ccaactcacttctggaatttcttGTTGACAactgacagtcct
                     ccCTATAAAATCGAGTTTATCTtgataatcgagatattcaacaatcaaactattatca
                     t"
                     /listShort="mdr"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    316534..316539
                     /Source="Nicolas_upshift_promotors"
                     /id="U226"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=970
                     /SigmaFactorBS="ttgaacgtctgaaacagtaagtgaatttgTGCATAgcttggc
                     ccgttcccGAATAAATTGTACAAGTTAcataagagaagggagtacgggccggtgaaca
                     t"
                     /listShort="ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    316555..316573
                     /Source="Nicolas_upshift_promotors"
                     /id="U226"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=970
                     /SigmaFactorBS="ttgaacgtctgaaacagtaagtgaatttgTGCATAgcttggc
                     ccgttcccGAATAAATTGTACAAGTTAcataagagaagggagtacgggccggtgaaca
                     t"
                     /listShort="ycgF, ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        316565
                     /Source="Nicolas_upshifts"
                     /id="U226"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=970
                     /SigmaFactorBS="ttgaacgtctgaaacagtaagtgaatttgTGCATAgcttggc
                     ccgttcccGAATAAATTGTACAAGTTAcataagagaagggagtacgggccggtgaaca
                     t"
                     /listShort="ycgF, ycgG"
                     /GFF_Attribute="listLong"
     CDS             316598..317227
                     /gene="ycgF"
                     /locus_tag="BSU_03090"
                     /old_locus_tag="BSU03090"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid export permease"
                     /protein_id="NP_388191.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03090"
                     /db_xref="EnsemblGenomes-Tr:CAB12103"
                     /db_xref="GOA:P94381"
                     /db_xref="InterPro:IPR001123"
                     /db_xref="SubtiList:BG12004"
                     /db_xref="UniProtKB/Swiss-Prot:P94381"
                     /translation="MNIFLSYIVLGLSLSAPVGPVNAAQIDKGIKNGFWHAWIFGLGA
                     MTADGLYMLFIYFGLSQFLTAPFVKTFLWLFGFFVLTYTGIETLKNVREPMDVRSSRG
                     KPSYRKTFASGFLISLSNPLSILFWLGIYGSILAKTAEAYNMNQLLIYSSGIMIGILI
                     WDFCMAITASTFRNLLHEKLLRGLTGIAGVSLLVFGFYFGYQGIKQLLG*"
     gene            316598..317227
                     /gene="ycgF"
                     /locus_tag="BSU_03090"
                     /old_locus_tag="BSU03090"
     promotor_-35    317238..317247
                     /Source="Nicolas_upshift_promotors"
                     /id="U227"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1281
                     /SigmaFactorBS="caaacagttattgggctgattcatgaaggACAGTCACCTgcc
                     gcttccagttTTAATATAGTATCCAGATGAtactggaggtggatcaatggtgaatggg
                     a"
                     /listShort="ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    317261..317280
                     /Source="Nicolas_upshift_promotors"
                     /id="U227"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1281
                     /SigmaFactorBS="caaacagttattgggctgattcatgaaggACAGTCACCTgcc
                     gcttccagttTTAATATAGTATCCAGATGAtactggaggtggatcaatggtgaatggg
                     a"
                     /listShort="ycgG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        317269
                     /Source="Nicolas_upshifts"
                     /id="U227"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1281
                     /SigmaFactorBS="caaacagttattgggctgattcatgaaggACAGTCACCTgcc
                     gcttccagttTTAATATAGTATCCAGATGAtactggaggtggatcaatggtgaatggg
                     a"
                     /listShort="ycgG"
                     /GFF_Attribute="listLong"
     CDS             317297..318058
                     /gene="ycgG"
                     /locus_tag="BSU_03100"
                     /old_locus_tag="BSU03100"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function (similar
                     to phage protein)"
                     /protein_id="NP_388192.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03100"
                     /db_xref="EnsemblGenomes-Tr:CAB12104"
                     /db_xref="InterPro:IPR014988"
                     /db_xref="SubtiList:BG12005"
                     /db_xref="UniProtKB/Swiss-Prot:P94382"
                     /translation="MVNGIYTKSFLERIQEELPEWQRIAFELLAETLGDDADTFPCIP
                     GRQAFLTDQLRIAFAGDPRENRTAEELAPLLAEYGKISRDTGKYASLVVLFDTPEDLA
                     EHYSIEAYEELFWRFLNRLSHQDEKEWPEDIPADPEHYKWEFCFDGEPYFILCATPGH
                     EARRSRSFPFFMVTFQPRWVFDDLNGSTAFGRNMSRLIRSRLEAYDQAPIHPQLGWYG
                     GKDNREWKQYFLRDDEKQVSKCPFSYLKNMFNKMK*"
     gene            317297..318058
                     /gene="ycgG"
                     /locus_tag="BSU_03100"
                     /old_locus_tag="BSU03100"
     S_feature       complement(317697..318059)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_335729_336091_c"
                     /HighExp="S8, S7, S5, S6, S4, nit, ferm, BT, Pyr, G/S"
                     /AntisenseName="ycgG"
                     /AntisenseCor="0.73875580854115197"
                     /AntisenseRegPval="-46.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S109"
     downshifts      318055
                     /Source="Nicolas_upshifts"
                     /id="D135"
                     /incds=0
                     /nref=21
                     /ntot=174
                     /MaxReadThrough="1.53211"
                     /MaxDrop="4.92685"
                     /score="6.36985882"
                     /energy="-8.6"
                     /TU="NA"
                     /idTUdmin="U227"
                     /TUdmin="-6"
                     /isTUend="TRUE"
     CDS             complement(318060..319400)
                     /gene="ycgH"
                     /locus_tag="BSU_03110"
                     /old_locus_tag="BSU03110"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amino acid transporter"
                     /protein_id="NP_388193.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03110"
                     /db_xref="EnsemblGenomes-Tr:CAB12105"
                     /db_xref="GOA:P94383"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="SubtiList:BG12006"
                     /db_xref="UniProtKB/Swiss-Prot:P94383"
                     /translation="MSQTKKDQPKGNLAWWQLSLIGVGCTIGTGFFLGSSIAIVKSGF
                     SVLLSFLIAGIGTYFVFEQLAKLSAKQPEKGSFCAYARKAFGKWAGFSNGWVYWTSEM
                     LITGSQLTAISLFTKHWFPQVPLWVFASIYAVLGLLIIFTGLSVFEKTENVLAVIKTA
                     AIFMFIVIAILALCGILSGGNHGIHVPNKTSEFFPYGAMGLWTGLIYAFYAFGGIEVM
                     GLMAVHLKKPEEASKSGKLMLATLAIIYIISIGLALLLVPLHTFTEQDSPFITSLKGY
                     NLEIILDIFNGIFIIAGFSTLVASLFAVTTLLCTMADDGDAPKCFTLKEGKKICWPAL
                     GLTFAGLVLSIILSLVLPKNIYEHMTTAAGLMLLYTWLFILFSSKKLTDPEGMGKTQI
                     YLAMVLIAAAVSGTLFEKSSRPGFFVSIGFLVIIAIVTMIYQKKQGHKDRPASP*"
     gene            complement(318060..319400)
                     /gene="ycgH"
                     /locus_tag="BSU_03110"
                     /old_locus_tag="BSU03110"
     promotor_-10    complement(319427..319438)
                     /Source="Nicolas_upshift_promotors"
                     /id="U228"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=918
                     /SigmaFactorBS="ctgcttccttctccatgtaaaaagaggcaaaaatccgaTGTA
                     TATaagctttggacagaTCACAATCTAACcttagataaaaggggttgaataaataatg
                     a"
                     /listShort="ycgH, S109"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(319437)
                     /Source="Nicolas_upshifts"
                     /id="U228"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=918
                     /SigmaFactorBS="ctgcttccttctccatgtaaaaagaggcaaaaatccgaTGTA
                     TATaagctttggacagaTCACAATCTAACcttagataaaaggggttgaataaataatg
                     a"
                     /listShort="ycgH, S109"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(319453..319459)
                     /Source="Nicolas_upshift_promotors"
                     /id="U228"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=918
                     /SigmaFactorBS="ctgcttccttctccatgtaaaaagaggcaaaaatccgaTGTA
                     TATaagctttggacagaTCACAATCTAACcttagataaaaggggttgaataaataatg
                     a"
                     /listShort="ycgH, S109"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    319479..319485
                     /Source="Nicolas_upshift_promotors"
                     /id="U229"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=817
                     /SigmaFactorBS="ttgtgatctgtccaaagcttatatacatcggatttttgcctc
                     ttttTACATGGagaaggaagcagacGCTCATACTAATgaaaaaaggagcaaaccaatg
                     a"
                     /listShort="ycgI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        319493
                     /Source="Nicolas_upshifts"
                     /id="U229"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=817
                     /SigmaFactorBS="ttgtgatctgtccaaagcttatatacatcggatttttgcctc
                     ttttTACATGGagaaggaagcagacGCTCATACTAATgaaaaaaggagcaaaccaatg
                     a"
                     /listShort="ycgI"
                     /GFF_Attribute="listLong"
     promotor_-10    319500..319511
                     /Source="Nicolas_upshift_promotors"
                     /id="U229"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=817
                     /SigmaFactorBS="ttgtgatctgtccaaagcttatatacatcggatttttgcctc
                     ttttTACATGGagaaggaagcagacGCTCATACTAATgaaaaaaggagcaaaccaatg
                     a"
                     /listShort="ycgI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             319530..320126
                     /gene="ycgI"
                     /locus_tag="BSU_03120"
                     /old_locus_tag="BSU03120"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 16433904, 28898812;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="xenotiotic metabolite methyltransferase"
                     /protein_id="NP_388194.3"
                     /db_xref="EnsemblGenomes-Gn:BSU03120"
                     /db_xref="EnsemblGenomes-Tr:CAB12106"
                     /db_xref="InterPro:IPR018959"
                     /db_xref="SubtiList:BG12007"
                     /db_xref="UniProtKB/Swiss-Prot:O31473"
                     /translation="MTQQYIVEPKKGLGLKLKKGQILKVVDVEGQQVADFVAYHAKDF
                     YEHLDQGATIDANHSIHVKVNDHLYSNLYKPMLTLIEDTVGKHDLLLPACRPDMNRLL
                     YGKQKDEFQDTCYDNMNRALEQFGVPKPHMHYPFAIFMNTVLDEKGNLSVETPLSNAG
                     DYVRLRAEMDLIVAFSSCPIEKGKCNGDSVTSIRVEVS*"
     gene            319530..320126
                     /gene="ycgI"
                     /locus_tag="BSU_03120"
                     /old_locus_tag="BSU03120"
     promotor_-35    320134..320141
                     /Source="Nicolas_upshift_promotors"
                     /id="U230"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.471528471528472"
                     /psig="0.99100899100899"
                     /xcortree=104
                     /SigmaFactorBS="gtgtgacatccatacgggttgaagtcagctgatctctctTGT
                     TCACAgtgaatgaagaccTGTGCTATATTTAATAGGGAtacataacagtcatgattca
                     t"
                     /listShort="S110, nadE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       320155..320255
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_338187_338287"
                     /HighExp="dia15, LBGtran, dia5, Etha, dia0, LBGexp, M0t45,
                     Lbexp, Diami, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.991"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S110"
     promotor_-10    320155..320174
                     /Source="Nicolas_upshift_promotors"
                     /id="U230"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.471528471528472"
                     /psig="0.99100899100899"
                     /xcortree=104
                     /SigmaFactorBS="gtgtgacatccatacgggttgaagtcagctgatctctctTGT
                     TCACAgtgaatgaagaccTGTGCTATATTTAATAGGGAtacataacagtcatgattca
                     t"
                     /listShort="S110, nadE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        320155
                     /Source="Nicolas_upshifts"
                     /id="U230"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.471528471528472"
                     /psig="0.99100899100899"
                     /xcortree=104
                     /SigmaFactorBS="gtgtgacatccatacgggttgaagtcagctgatctctctTGT
                     TCACAgtgaatgaagaccTGTGCTATATTTAATAGGGAtacataacagtcatgattca
                     t"
                     /listShort="S110, nadE"
                     /GFF_Attribute="listLong"
     downshifts      complement(320251)
                     /Source="Nicolas_upshifts"
                     /id="D136"
                     /incds=0
                     /nref=3
                     /ntot=24
                     /MaxReadThrough="1.2989"
                     /MaxDrop="4.67402"
                     /score="15.0992897"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U233"
                     /TUdmin=1562
                     /isTUend="FALSE"
     CDS             320256..321074
                     /gene="nadE"
                     /locus_tag="BSU_03130"
                     /old_locus_tag="BSU03130"
                     /EC_number="6.3.1.5"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7890752, 9271869, 12682299, 19204287"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7890752, 9271869,
                     12682299, 19204287; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium-dependent NAD+ synthetase"
                     /protein_id="NP_388195.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03130"
                     /db_xref="EnsemblGenomes-Tr:CAB12107"
                     /db_xref="GOA:P08164"
                     /db_xref="InterPro:IPR003694"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR022310"
                     /db_xref="InterPro:IPR022926"
                     /db_xref="PDB:1EE1"
                     /db_xref="PDB:1FYD"
                     /db_xref="PDB:1IFX"
                     /db_xref="PDB:1IH8"
                     /db_xref="PDB:1KQP"
                     /db_xref="PDB:1NSY"
                     /db_xref="PDB:2NSY"
                     /db_xref="SubtiList:BG10694"
                     /db_xref="UniProtKB/Swiss-Prot:P08164"
                     /translation="MSMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVL
                     GISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDK
                     SWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDH
                     AAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQ
                     QSDETELGISYDEIDDYLEGKEVSAKVSEALEKRYSMTEHKRQVPASMFDDWWK*"
     gene            320256..321074
                     /gene="nadE"
                     /locus_tag="BSU_03130"
                     /old_locus_tag="BSU03130"
     downshifts      321056
                     /Source="Nicolas_upshifts"
                     /id="D137"
                     /incds=0
                     /nref=144
                     /ntot=271
                     /MaxReadThrough="2.68866"
                     /MaxDrop="6.24927"
                     /score="20.6612287"
                     /energy="-14.1"
                     /TU="U230"
                     /idTUdmin="U230"
                     /TUdmin="-65"
                     /isTUend="FALSE"
     CDS             complement(321124..321717)
                     /gene="tmrB"
                     /locus_tag="BSU_03140"
                     /old_locus_tag="BSU03140"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:1624425, 7766032, 15131133, 27315722"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1624425, 7766032,
                     15131133, 27315722; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding tunicamycin resistance protein"
                     /protein_id="NP_388196.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03140"
                     /db_xref="EnsemblGenomes-Tr:CAB12108"
                     /db_xref="GOA:P12921"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10456"
                     /db_xref="UniProtKB/Swiss-Prot:P12921"
                     /translation="MIIWINGAFGSGKTQTAFELHRRLNPSYVYDPEKMGFALRSMVP
                     QEIAKDDFQSYPLWRAFNYSLLASLTDTYRGILIVPMTIVHPEYFNEIIGRLRQEGRI
                     VHHFTLMASKETLLKRLRTRAEGKNSWAAKQIDRCVEGLSSPIFEDHIQTDNLSIQDV
                     AENIAARAELPLDPDTRGSLRRFADRLMVKLNHIRIK*"
     gene            complement(321124..321717)
                     /gene="tmrB"
                     /locus_tag="BSU_03140"
                     /old_locus_tag="BSU03140"
     downshifts      complement(321131)
                     /Source="Nicolas_upshifts"
                     /id="D138"
                     /incds=0
                     /nref=10
                     /ntot=143
                     /MaxReadThrough="0.60282"
                     /MaxDrop="3.74815"
                     /score="15.0992897"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U233"
                     /TUdmin=682
                     /isTUend="FALSE"
     promotor_-10    complement(321732..321751)
                     /Source="Nicolas_upshift_promotors"
                     /id="U231"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.999000999001"
                     /xcortree=3131
                     /SigmaFactorBS="gttaaaaccttccgcctttattgtttttccagctgactCTTC
                     gatggaagggtcttTTTCTGTATGATAAATAGGAagggagaaatggcgatgatcattt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(321747)
                     /Source="Nicolas_upshifts"
                     /id="U231"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.999000999001"
                     /xcortree=3131
                     /SigmaFactorBS="gttaaaaccttccgcctttattgtttttccagctgactCTTC
                     gatggaagggtcttTTTCTGTATGATAAATAGGAagggagaaatggcgatgatcattt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(321766..321769)
                     /Source="Nicolas_upshift_promotors"
                     /id="U231"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.999000999001"
                     /xcortree=3131
                     /SigmaFactorBS="gttaaaaccttccgcctttattgtttttccagctgactCTTC
                     gatggaagggtcttTTTCTGTATGATAAATAGGAagggagaaatggcgatgatcattt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(321775..321923)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_339807_339955_c"
                     /HighExp="S4, S3, S6, S5, S7, BT, S8, LoTm, T5.0H, B36"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.987"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S111"
     promotor_-35    321825..321832
                     /Source="Nicolas_upshift_promotors"
                     /id="U232"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.997002997002997"
                     /xcortree=3017
                     /SigmaFactorBS="aaaggcggaaggttttaacgcttttttgcgtcgaagTATTAA
                     AAtacctgcagaaaTGTTGTACAATGAATGTCATtcaggcaaaaatggctacaacaaa
                     g"
                     /listShort="S112, aroK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    321845..321864
                     /Source="Nicolas_upshift_promotors"
                     /id="U232"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.997002997002997"
                     /xcortree=3017
                     /SigmaFactorBS="aaaggcggaaggttttaacgcttttttgcgtcgaagTATTAA
                     AAtacctgcagaaaTGTTGTACAATGAATGTCATtcaggcaaaaatggctacaacaaa
                     g"
                     /listShort="S112, aroK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       321847..321955
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_339879_339987"
                     /HighExp="Diami, BMM, GM 15, GM 25, GM 120, GM 60, GM 10,
                     G180, GM 45, M9-exp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S112"
     upshifts        321849
                     /Source="Nicolas_upshifts"
                     /id="U232"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.997002997002997"
                     /xcortree=3017
                     /SigmaFactorBS="aaaggcggaaggttttaacgcttttttgcgtcgaagTATTAA
                     AAtacctgcagaaaTGTTGTACAATGAATGTCATtcaggcaaaaatggctacaacaaa
                     g"
                     /listShort="S112, aroK"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(321917..321935)
                     /Source="Nicolas_upshift_promotors"
                     /id="U233"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=1121
                     /SigmaFactorBS="tcttcggcgaaatcctcctaaggaatgaaattatataTTCAT
                     TatatgcttatttagcGAATATTTATATAGATACCggctttaccggtcaagcttatag
                     t"
                     /listShort="S111"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    321923..321930
                     /Source="Nicolas_upshift_promotors"
                     /id="U234"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig="0.988011988011988"
                     /xcortree=1750
                     /SigmaFactorBS="taagcttgaccggtaaagccggtatcTATATAAAtattcgct
                     aaataaGCATATAATGAATATATAATttcattccttaggaggatttcgccgaagatga
                     a"
                     /listShort="aroK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(321933)
                     /Source="Nicolas_upshifts"
                     /id="U233"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=1121
                     /SigmaFactorBS="tcttcggcgaaatcctcctaaggaatgaaattatataTTCAT
                     TatatgcttatttagcGAATATTTATATAGATACCggctttaccggtcaagcttatag
                     t"
                     /listShort="S111"
                     /GFF_Attribute="listLong"
     promotor_-10    321945..321964
                     /Source="Nicolas_upshift_promotors"
                     /id="U234"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig="0.988011988011988"
                     /xcortree=1750
                     /SigmaFactorBS="taagcttgaccggtaaagccggtatcTATATAAAtattcgct
                     aaataaGCATATAATGAATATATAATttcattccttaggaggatttcgccgaagatga
                     a"
                     /listShort="aroK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(321951..321956)
                     /Source="Nicolas_upshift_promotors"
                     /id="U233"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=1121
                     /SigmaFactorBS="tcttcggcgaaatcctcctaaggaatgaaattatataTTCAT
                     TatatgcttatttagcGAATATTTATATAGATACCggctttaccggtcaagcttatag
                     t"
                     /listShort="S111"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        321957
                     /Source="Nicolas_upshifts"
                     /id="U234"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.943056943056943"
                     /psig="0.988011988011988"
                     /xcortree=1750
                     /SigmaFactorBS="taagcttgaccggtaaagccggtatcTATATAAAtattcgct
                     aaataaGCATATAATGAATATATAATttcattccttaggaggatttcgccgaagatga
                     a"
                     /listShort="aroK"
                     /GFF_Attribute="listLong"
     CDS             321993..322553
                     /gene="aroK"
                     /locus_tag="BSU_03150"
                     /old_locus_tag="BSU03150"
                     /EC_number="2.7.1.71"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 170268, 7612934, 27339308;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="NP_388197.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03150"
                     /db_xref="EnsemblGenomes-Tr:CAB12109"
                     /db_xref="GOA:P37944"
                     /db_xref="InterPro:IPR000623"
                     /db_xref="InterPro:IPR023000"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR031322"
                     /db_xref="SubtiList:BG10457"
                     /db_xref="UniProtKB/Swiss-Prot:P37944"
                     /translation="MNAKRAIPVRERNIVLIGFMGVGKTTIGQLVAKKLYRDFIDIDQ
                     QIEKDFNMSIPEIFEKKGEDFFRKTEKEYILDICHHKRFKIVSLGGGSFKQEEIRNCC
                     LENCLVLHLDLSWENWKQRADLLIESRPVLHNRSMDEMEQLFNERKVIYDKHNSKVAT
                     DNLSPEEVADYIVETLKIGWDLYQPM*"
     gene            321993..322553
                     /gene="aroK"
                     /locus_tag="BSU_03150"
                     /old_locus_tag="BSU03150"
     downshifts      322530
                     /Source="Nicolas_upshifts"
                     /id="D139"
                     /incds=0
                     /nref=21
                     /ntot=239
                     /MaxReadThrough="2.07607"
                     /MaxDrop="4.67156"
                     /score="44.9099474"
                     /energy="-13.1"
                     /TU="NA"
                     /idTUdmin="U232"
                     /TUdmin=1
                     /isTUend="TRUE"
     CDS             complement(322581..323342)
                     /gene="ycgJ"
                     /locus_tag="BSU_03160"
                     /old_locus_tag="BSU03160"
                     /EC_number="2.1.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 28898812; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="xenotiotic metabolite methyltransferase"
                     /protein_id="NP_388198.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03160"
                     /db_xref="EnsemblGenomes-Tr:CAB12110"
                     /db_xref="GOA:O31474"
                     /db_xref="InterPro:IPR013216"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="PDB:1XXL"
                     /db_xref="PDB:2GLU"
                     /db_xref="SubtiList:BG12008"
                     /db_xref="UniProtKB/Swiss-Prot:O31474"
                     /translation="MTNETPFSKNAEMYRDEKVFAEGEDLGLMIKTAECRAEHRVLDI
                     GAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD
                     SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLR
                     DPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQYDSWIKRGGTPADREKQIITHLN
                     HASDEARDTFCITLNQNGQPISFCLKAILIQGIKR*"
     gene            complement(322581..323342)
                     /gene="ycgJ"
                     /locus_tag="BSU_03160"
                     /old_locus_tag="BSU03160"
     downshifts      complement(322605)
                     /Source="Nicolas_upshifts"
                     /id="D140"
                     /incds=0
                     /nref=3
                     /ntot=55
                     /MaxReadThrough="0.31391"
                     /MaxDrop="3.85249"
                     /score="18.9843263"
                     /energy="-13.1"
                     /TU="NA"
                     /idTUdmin="U235"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(323374..323393)
                     /Source="Nicolas_upshift_promotors"
                     /id="U235"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.392607392607393"
                     /psig="0.942057942057942"
                     /xcortree=1808
                     /SigmaFactorBS="acctatcattttcatcatttttatatcTTGGACgaatcataa
                     cagaaATTGCTAACATAATCCATATcatcatttacgaaaagaaggagctggttcaaat
                     g"
                     /listShort="ycgJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    323375..323382
                     /Source="Nicolas_upshift_promotors"
                     /id="U236"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig="0.983016983016983"
                     /xcortree=1867
                     /SigmaFactorBS="cagctccttcttttcgtaaatgatgaTATGGATTatgttagc
                     aatttcTGTTATGATTCGTCCAAGATataaaaatgatgaaaatgataggttcaaccta
                     t"
                     /listShort="ycgK, S113, cah, S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(323380)
                     /Source="Nicolas_upshifts"
                     /id="U235"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.392607392607393"
                     /psig="0.942057942057942"
                     /xcortree=1808
                     /SigmaFactorBS="acctatcattttcatcatttttatatcTTGGACgaatcataa
                     cagaaATTGCTAACATAATCCATATcatcatttacgaaaagaaggagctggttcaaat
                     g"
                     /listShort="ycgJ"
                     /GFF_Attribute="listLong"
     promotor_-10    323397..323416
                     /Source="Nicolas_upshift_promotors"
                     /id="U236"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig="0.983016983016983"
                     /xcortree=1867
                     /SigmaFactorBS="cagctccttcttttcgtaaatgatgaTATGGATTatgttagc
                     aatttcTGTTATGATTCGTCCAAGATataaaaatgatgaaaatgataggttcaaccta
                     t"
                     /listShort="ycgK, S113, cah, S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(323408..323413)
                     /Source="Nicolas_upshift_promotors"
                     /id="U235"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.392607392607393"
                     /psig="0.942057942057942"
                     /xcortree=1808
                     /SigmaFactorBS="acctatcattttcatcatttttatatcTTGGACgaatcataa
                     cagaaATTGCTAACATAATCCATATcatcatttacgaaaagaaggagctggttcaaat
                     g"
                     /listShort="ycgJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        323409
                     /Source="Nicolas_upshifts"
                     /id="U236"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig="0.983016983016983"
                     /xcortree=1867
                     /SigmaFactorBS="cagctccttcttttcgtaaatgatgaTATGGATTatgttagc
                     aatttcTGTTATGATTCGTCCAAGATataaaaatgatgaaaatgataggttcaaccta
                     t"
                     /listShort="ycgK, S113, cah, S114, ycgL"
                     /GFF_Attribute="listLong"
     CDS             323460..324434
                     /gene="ycgK"
                     /locus_tag="BSU_03170"
                     /old_locus_tag="BSU03170"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10939241; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (LysR
                     family)"
                     /protein_id="NP_388199.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03170"
                     /db_xref="EnsemblGenomes-Tr:CAB12111"
                     /db_xref="GOA:P94387"
                     /db_xref="InterPro:IPR000847"
                     /db_xref="InterPro:IPR005119"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12009"
                     /db_xref="UniProtKB/Swiss-Prot:P94387"
                     /translation="MDIKVMEYAAEIARRQSFTKAAEHLHIAQPSLSQQIKKLEAELG
                     LTLFHRSHGSVTLTPHGRRFIEKAEDIIRSRDDLLREMQERSQGIGHKLSIGIPAVTG
                     RYLFPPLLKQFLARYPHVEVQLVEKDPVSLEKMTAKGEVDLSVLSLPIEDERLSITPL
                     LTEPVVLAVPKEKQRWMPPELVALIEKALEEDEGRQPCVPIDMVRNVPFILLKEGFGF
                     RRTVLDLCAESGFKPNAAFKTSHIETAQSLVANGLGVTMAPNMVRRDKDPGVIYLSIQ
                     SAPSRTLVFVFLKNRYVSLTAQAFMELSRESLKQTFDEGCLGNKDENI*"
     gene            323460..324434
                     /gene="ycgK"
                     /locus_tag="BSU_03170"
                     /old_locus_tag="BSU03170"
     S_feature       324435..324505
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_342467_342537"
                     /HighExp="Diami, dia5, dia15, S1, dia0, C90, LBGexp, Heat,
                     Lbexp, GM 120"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.983"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S113"
     CDS             324506..325462
                     /gene="cah"
                     /locus_tag="BSU_03180"
                     /old_locus_tag="BSU03180"
                     /EC_number="3.1.1.41"
                     /EC_number="3.1.1.72"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12842474, 19837798, 21382014"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12842474, 19837798,
                     21382014; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous acetyl xylan esterase-cephalosporin
                     C deacetylase"
                     /protein_id="NP_388200.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03180"
                     /db_xref="EnsemblGenomes-Tr:CAB12112"
                     /db_xref="GOA:P94388"
                     /db_xref="InterPro:IPR008391"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:1L7A"
                     /db_xref="PDB:1ODS"
                     /db_xref="PDB:1ODT"
                     /db_xref="SubtiList:BG11919"
                     /db_xref="UniProtKB/Swiss-Prot:P94388"
                     /translation="MQLFDLPLDQLQTYKPEKTAPKDFSEFWKLSLEELAKVQAEPDL
                     QPVDYPADGVKVYRLTYKSFGNARITGWYAVPDKEGPHPAIVKYHGYNASYDGEIHEM
                     VNWALHGYATFGMLVRGQQSSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRA
                     LEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVAL
                     EQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPST
                     VFAAYNHLETKKELKVYRYFGHEYIPAFQTEKLAFFKQHLKG*"
     gene            324506..325462
                     /gene="cah"
                     /locus_tag="BSU_03180"
                     /old_locus_tag="BSU03180"
     promotor_-35    324921..324927
                     /Source="Nicolas_upshift_promotors"
                     /id="U237"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=806
                     /SigmaFactorBS="ttcaccgcacggtcacgctttgggctggatgaCGAAAGGaat
                     tcttgataaagATACATACTATTaccgcggtgtttatttggacgccgtccgcgcgctt
                     g"
                     /listShort="S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    324942..324953
                     /Source="Nicolas_upshift_promotors"
                     /id="U237"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=806
                     /SigmaFactorBS="ttcaccgcacggtcacgctttgggctggatgaCGAAAGGaat
                     tcttgataaagATACATACTATTaccgcggtgtttatttggacgccgtccgcgcgctt
                     g"
                     /listShort="S114, ycgL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        324949
                     /Source="Nicolas_upshifts"
                     /id="U237"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=806
                     /SigmaFactorBS="ttcaccgcacggtcacgctttgggctggatgaCGAAAGGaat
                     tcttgataaagATACATACTATTaccgcggtgtttatttggacgccgtccgcgcgctt
                     g"
                     /listShort="S114, ycgL"
                     /GFF_Attribute="listLong"
     S_feature       325463..325541
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_343495_343573"
                     /HighExp="dia5, dia15, Diami, dia0, B36, S1, MG 10, BT,
                     B60, MG t5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigA"
                     /TUshortPSig="0.998, 0.983"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S114"
     promotor_-35    325516..325521
                     /Source="Nicolas_upshift_promotors"
                     /id="U238"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1193
                     /SigmaFactorBS="atatcatcaggcggtttttttctgcaaactgccGGAATGaga
                     acagactggagacGAATAGATATGAAACAAAGaatcattgatgaattaaaacggatcg
                     a"
                     /listShort="ycgL, S115, ycgM, ycgN, S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    325538..325556
                     /Source="Nicolas_upshift_promotors"
                     /id="U238"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1193
                     /SigmaFactorBS="atatcatcaggcggtttttttctgcaaactgccGGAATGaga
                     acagactggagacGAATAGATATGAAACAAAGaatcattgatgaattaaaacggatcg
                     a"
                     /listShort="ycgL, S115, ycgM, ycgN, S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        325543
                     /Source="Nicolas_upshifts"
                     /id="U238"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1193
                     /SigmaFactorBS="atatcatcaggcggtttttttctgcaaactgccGGAATGaga
                     acagactggagacGAATAGATATGAAACAAAGaatcattgatgaattaaaacggatcg
                     a"
                     /listShort="ycgL, S115, ycgM, ycgN, S116, ycgO"
                     /GFF_Attribute="listLong"
     CDS             325546..326328
                     /gene="ycgL"
                     /locus_tag="BSU_03190"
                     /old_locus_tag="BSU03190"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388201.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03190"
                     /db_xref="EnsemblGenomes-Tr:CAB12113"
                     /db_xref="InterPro:IPR018775"
                     /db_xref="SubtiList:BG12010"
                     /db_xref="UniProtKB/Swiss-Prot:P94389"
                     /translation="MKQRIIDELKRIEQSYGVKIVYAVESGSRAWGFPSQDSDYDVRF
                     IYVPKKEWYFSIEQERDVIEEPIHDLLDISGWELRKTLRLFKKSNPPLLEWLSSDIVY
                     YEAFTTAEQLRKLRTEAFKPEASVYHYINMARRNVKDYLQGQEVKIKKYFYVLRPILA
                     CQWIEKHGTIPPMDFTVLMNELVAEPELKAEMETLLERKRRGEELDLEARIDVIHQFI
                     ETEIERIMEAAKELKAEKKDMTSELNRLLLNTVEEVWKDGGS*"
     gene            325546..326328
                     /gene="ycgL"
                     /locus_tag="BSU_03190"
                     /old_locus_tag="BSU03190"
     downshifts      326293
                     /Source="Nicolas_upshifts"
                     /id="D141"
                     /incds=0
                     /nref=11
                     /ntot=63
                     /MaxReadThrough="3.94077"
                     /MaxDrop="4.37398"
                     /score="0.421649027"
                     /energy="-5.9"
                     /TU="U238"
                     /idTUdmin="U236"
                     /TUdmin=2
                     /isTUend="TRUE"
     S_feature       326338..326465
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_344370_344497"
                     /HighExp="S5, S6, S8, S4, S7, B36, B60, BT, S3, S1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S115"
     promotor_-35    326442..326446
                     /Source="Nicolas_upshift_promotors"
                     /id="U239"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.472527472527473"
                     /psig="0.922077922077922"
                     /xcortree=391
                     /SigmaFactorBS="cacaaaaataatcagaatctttgtattttgagaatATTGTga
                     acgctggttttgTCCATTTACAATAAACTCATacaaatacttcttagattgcggggtg
                     t"
                     /listShort="ycgM, ycgN, S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    326461..326480
                     /Source="Nicolas_upshift_promotors"
                     /id="U239"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.472527472527473"
                     /psig="0.922077922077922"
                     /xcortree=391
                     /SigmaFactorBS="cacaaaaataatcagaatctttgtattttgagaatATTGTga
                     acgctggttttgTCCATTTACAATAAACTCATacaaatacttcttagattgcggggtg
                     t"
                     /listShort="ycgM, ycgN, S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        326467
                     /Source="Nicolas_upshifts"
                     /id="U239"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.472527472527473"
                     /psig="0.922077922077922"
                     /xcortree=391
                     /SigmaFactorBS="cacaaaaataatcagaatctttgtattttgagaatATTGTga
                     acgctggttttgTCCATTTACAATAAACTCATacaaatacttcttagattgcggggtg
                     t"
                     /listShort="ycgM, ycgN, S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
     CDS             326519..327430
                     /gene="putB"
                     /locus_tag="BSU_03200"
                     /old_locus_tag="BSU03200"
                     /EC_number="1.5.5.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:17536821, 2118500, 21840319, 22139509, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17536821, 2118500,
                     21840319, 22139509, 26735940; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="proline oxidase"
                     /protein_id="NP_388202.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03200"
                     /db_xref="EnsemblGenomes-Tr:CAB12114"
                     /db_xref="GOA:P94390"
                     /db_xref="InterPro:IPR002872"
                     /db_xref="InterPro:IPR008219"
                     /db_xref="InterPro:IPR015659"
                     /db_xref="InterPro:IPR029041"
                     /db_xref="SubtiList:BG12011"
                     /db_xref="UniProtKB/Swiss-Prot:P94390"
                     /translation="MITRDFFLFLSKSGFLNKMARNWGSRVAAGKIIGGNDFNSSIPT
                     IRQLNSQGLSVTVDHLGEFVNSAEVARERTEECIQTIATIADQELNSHVSLKMTSLGL
                     DIDMDLVYENMTKILQTAEKHKIMVTIDMEDEVRCQKTLDIFKDFRKKYEHVSTVLQA
                     YLYRTEKDIDDLDSLNPFLRLVKGAYKESEKVAFPEKSDVDENYKKIIRKQLLNGHYT
                     AIATHDDKMIDFTKQLAKEHGIANDKFEFQMLYGMRSQTQLSLVKEGYNMRVYLPYGE
                     DWYGYFMRRLAERPSNIAFAFKGMTKK*"
     gene            326519..327430
                     /gene="putB"
                     /locus_tag="BSU_03200"
                     /old_locus_tag="BSU03200"
     CDS             327447..328994
                     /gene="putC"
                     /locus_tag="BSU_03210"
                     /old_locus_tag="BSU03210"
                     /EC_number="1.2.1.88"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11418582, 17183215, 21840319, 22139509, 25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11418582, 17183215,
                     21840319, 22139509, 25355936; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="1-pyrroline-5-carboxylate dehydrogenase"
                     /protein_id="NP_388203.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03210"
                     /db_xref="EnsemblGenomes-Tr:CAB12115"
                     /db_xref="GOA:P94391"
                     /db_xref="InterPro:IPR005932"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016160"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="InterPro:IPR029510"
                     /db_xref="SubtiList:BG12012"
                     /db_xref="UniProtKB/Swiss-Prot:P94391"
                     /translation="MTTPYKHEPFTNFQDQNNVEAFKKALATVSEYLGKDYPLVINGE
                     RVETEAKIVSINPADKEEVVGRVSKASQEHAEQAIQAAAKAFEEWRYTSPEERAAVLF
                     RAAAKVRRRKHEFSALLVKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSR
                     EGEKNQYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASATPVIAAKFV
                     EVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPG
                     QQHLKRVIAEMGGKDTVVVDEDADIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYD
                     QVLERVIEITESKVTAKPDSADVYMGPVIDQGSYDKIMSYIEIGKQEGRLVSGGTGDD
                     SKGYFIKPTIFADLDPKARLMQEEIFGPVVAFCKVSDFDEALEVANNTEYGLTGAVIT
                     NNRKHIERAKQEFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQA
                     KTISEMF*"
     gene            327447..328994
                     /gene="putC"
                     /locus_tag="BSU_03210"
                     /old_locus_tag="BSU03210"
     promotor_-35    328418..328424
                     /Source="Nicolas_upshift_promotors"
                     /id="U240"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.411588411588412"
                     /psig="0.994005994005994"
                     /xcortree=2488
                     /SigmaFactorBS="ggctttgcgggacaaaaatgctctgcaggttcACGTGCAgta
                     gttcatgaaaAAGTGTATGATCAAGTATTAgagcgtgtcattgaaattacggaatcaa
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    328438..328457
                     /Source="Nicolas_upshift_promotors"
                     /id="U240"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.411588411588412"
                     /psig="0.994005994005994"
                     /xcortree=2488
                     /SigmaFactorBS="ggctttgcgggacaaaaatgctctgcaggttcACGTGCAgta
                     gttcatgaaaAAGTGTATGATCAAGTATTAgagcgtgtcattgaaattacggaatcaa
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        328446
                     /Source="Nicolas_upshifts"
                     /id="U240"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.411588411588412"
                     /psig="0.994005994005994"
                     /xcortree=2488
                     /SigmaFactorBS="ggctttgcgggacaaaaatgctctgcaggttcACGTGCAgta
                     gttcatgaaaAAGTGTATGATCAAGTATTAgagcgtgtcattgaaattacggaatcaa
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
     promotor_-35    328529..328535
                     /Source="Nicolas_upshift_promotors"
                     /id="U241"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.793206793206793"
                     /psig=1
                     /xcortree=2403
                     /SigmaFactorBS="aaacctgacagtgcagatgtttatatgggaccTGTCATTgac
                     caaggttctTATGATAAAATTATGAGCTAtattgagatcggaaaacaggaagggcgtt
                     t"
                     /listShort="S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    328548..328567
                     /Source="Nicolas_upshift_promotors"
                     /id="U241"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.793206793206793"
                     /psig=1
                     /xcortree=2403
                     /SigmaFactorBS="aaacctgacagtgcagatgtttatatgggaccTGTCATTgac
                     caaggttctTATGATAAAATTATGAGCTAtattgagatcggaaaacaggaagggcgtt
                     t"
                     /listShort="S116, ycgO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        328557
                     /Source="Nicolas_upshifts"
                     /id="U241"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.793206793206793"
                     /psig=1
                     /xcortree=2403
                     /SigmaFactorBS="aaacctgacagtgcagatgtttatatgggaccTGTCATTgac
                     caaggttctTATGATAAAATTATGAGCTAtattgagatcggaaaacaggaagggcgtt
                     t"
                     /listShort="S116, ycgO"
                     /GFF_Attribute="listLong"
     misc_feature    328993..328997
                     /Source="Nicolas_upshift_promotors"
                     /id="U242"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.315684315684316"
                     /psig="0.248751248751249"
                     /xcortree=3009
                     /SigmaFactorBS="cgggccggattacttggctctgcatatgcaagcaaaaacaat
                     cagtgaaatgttctAAGCGggactaaatgggcatcctccctgcgggggtgtccatttc
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       328995..329117
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_347027_347149"
                     /HighExp="S1, T2.0H, T2.30H, Lbstat, aero, HiOs, BC, Sw,
                     LPh, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.52312199999999998"
                     /TUshortSig="Sig-, SigA, SigA, SigA, SigEF"
                     /TUshortPSig="0.249, 1, 0.994, 0.922, 0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S116"
     upshifts        328997
                     /Source="Nicolas_upshifts"
                     /id="U242"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.315684315684316"
                     /psig="0.248751248751249"
                     /xcortree=3009
                     /SigmaFactorBS="cgggccggattacttggctctgcatatgcaagcaaaaacaat
                     cagtgaaatgttctAAGCGggactaaatgggcatcctccctgcgggggtgtccatttc
                     a"
                     /listShort="S116, ycgO, S118, ycgP"
                     /GFF_Attribute="listLong"
     CDS             329118..330539
                     /gene="putP"
                     /locus_tag="BSU_03220"
                     /old_locus_tag="BSU03220"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11902719, 14976255, 15849754, 16850406, 21840319,
                     22139509, 24142252"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11902719, 14976255,
                     15849754, 16850406, 21840319, 22139509, 24142252; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proline permease"
                     /protein_id="NP_388204.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03220"
                     /db_xref="EnsemblGenomes-Tr:CAB12116"
                     /db_xref="GOA:P94392"
                     /db_xref="InterPro:IPR001734"
                     /db_xref="InterPro:IPR011851"
                     /db_xref="InterPro:IPR018212"
                     /db_xref="SubtiList:BG12013"
                     /db_xref="UniProtKB/Swiss-Prot:P94392"
                     /translation="MLLIGYFAYKRTSNLTDYMLGGRSLGPAVTALSAGAADMSGWLL
                     MGLPGAMFSTGLSGAWIVIGLCLGAWANWLYVAPRLRTYTEKAGNSITIPGFLENRFG
                     DQTKLLRLFSGIVILVFFTFYVSSGMVSGGVLFNSILGMDYHTGLWIVTGVVVAYTLF
                     GGFLAVSWTDFVQGIIMFAALILVPIVTFFHTGGAGDTVAEIRSVDPDMFNIFKGTSV
                     LGIISLFAWGLGYFGQPHIIVRFMAITSVKEIKRARRIGMGWMILSAVGAVLTGLGGI
                     AYYHQRGMTLKDPETIFIQLGNILFHPIITGFLISAILAAIMSTISSQLLVTSSSLVE
                     DLYKSMFRRSASDKELVFLGRLAVLAVSIVALVLAWEKNNTILGLVSYAWAGFGASFG
                     PVVLLSLFWKRMTKWGALAGMIVGAATVIIWANAGLSDFLYEMIPGFAASLLSVFFVS
                     ILTQAPSQAVTDQFNDYQDTMSQ*"
     gene            329118..330539
                     /gene="putP"
                     /locus_tag="BSU_03220"
                     /old_locus_tag="BSU03220"
     S_feature       complement(329638..331493)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_347670_349525_c"
                     /HighExp="T1.0H, T1.30H, T0.30H, T2.0H, T2.30H, T3.0H,
                     T3.30H, C30, T4.0H, Lbstat"
                     /AntisenseName="ycgP"
                     /AntisenseCor="0.143781082577395"
                     /AntisenseRegPval="-1.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD"
                     /TUshortPSig="0.679"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S117"
     downshifts      330519
                     /Source="Nicolas_upshifts"
                     /id="D142"
                     /incds=0
                     /nref=21
                     /ntot=160
                     /MaxReadThrough="5.09597"
                     /MaxDrop="4.17771"
                     /score="5.89792272"
                     /energy="-15.9"
                     /TU="U239,U240,U242"
                     /idTUdmin="U238"
                     /TUdmin=4
                     /isTUend="TRUE"
     S_feature       330564..330660
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_348596_348692"
                     /HighExp="S1, LPh, T2.0H, HPh, aero, Lbstat, LoTm, T2.30H,
                     Cold, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigA"
                     /TUshortPSig="0.249, 0.994, 0.922"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S118"
     promotor_-35    330631..330638
                     /Source="Nicolas_upshift_promotors"
                     /id="U243"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2392
                     /SigmaFactorBS="tttttcttttggaaacaaacgtattttttTCTATACAaaaag
                     accccgtatGGATATGATTAAAGTAAAAAaagtataggagaaaaaggtatggaagagc
                     t"
                     /listShort="ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    330653..330672
                     /Source="Nicolas_upshift_promotors"
                     /id="U243"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2392
                     /SigmaFactorBS="tttttcttttggaaacaaacgtattttttTCTATACAaaaag
                     accccgtatGGATATGATTAAAGTAAAAAaagtataggagaaaaaggtatggaagagc
                     t"
                     /listShort="ycgP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        330662
                     /Source="Nicolas_upshifts"
                     /id="U243"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2392
                     /SigmaFactorBS="tttttcttttggaaacaaacgtattttttTCTATACAaaaag
                     accccgtatGGATATGATTAAAGTAAAAAaagtataggagaaaaaggtatggaagagc
                     t"
                     /listShort="ycgP"
                     /GFF_Attribute="listLong"
     CDS             330692..331927
                     /gene="putR"
                     /locus_tag="BSU_03230"
                     /old_locus_tag="BSU03230"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:21840319, 21964733, 22139509"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21840319, 21964733,
                     22139509; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator of proline
                     degradationoperon"
                     /protein_id="NP_388205.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03230"
                     /db_xref="EnsemblGenomes-Tr:CAB12117"
                     /db_xref="GOA:P94393"
                     /db_xref="InterPro:IPR025736"
                     /db_xref="InterPro:IPR029016"
                     /db_xref="SubtiList:BG12014"
                     /db_xref="UniProtKB/Swiss-Prot:P94393"
                     /translation="MEELLERVFSFSDVDKLIDFISYELQKPVILESADFFLLAYNSY
                     YINHFDSANQQTIFSKKCPVQIFERFLKDGIIEKLKTEPEPFRVNKIESIGLNQRVVV
                     SAKHKGEVMGYIWIQELDQNLTDEELDFLYETSFHVGKIIYKTNKLKQEKEEKAEDLI
                     KRAIYQQFTSEKELRREAERINTVLPSMFSVVILHAANGDGEAVEDLKENIRSYLNLR
                     DKVSHVLTIESNIVIVVASFSQKSSVSSAASEFINKLLTHFHFQKIPTPIYIGIGNEY
                     NHLLKLGKSYTEALEVIKAAEITGNQENIPYEYAKLGIYRYLESIEQKNEFLEYENKD
                     LALLKAKDEESSTELLKTLEIYLLNNCKTKPAAEQLFIHQNTLNYRIKQITEMTSIDL
                     SDFRTRCQLYLDLMLMKKK*"
     gene            330692..331927
                     /gene="putR"
                     /locus_tag="BSU_03230"
                     /old_locus_tag="BSU03230"
     promotor_-10    complement(331486..331504)
                     /Source="Nicolas_upshift_promotors"
                     /id="U244"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.679320679320679"
                     /psig="0.679320679320679"
                     /xcortree=1717
                     /SigmaFactorBS="tcaagtgcttctgtgtagctcttgccaagttttaatagGTGA
                     TTATattcgtttccgatACCGATATAAATAGGGGTAggtattttttgaaagtgaaaat
                     g"
                     /listShort="S117"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(331503)
                     /Source="Nicolas_upshifts"
                     /id="U244"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.679320679320679"
                     /psig="0.679320679320679"
                     /xcortree=1717
                     /SigmaFactorBS="tcaagtgcttctgtgtagctcttgccaagttttaatagGTGA
                     TTATattcgtttccgatACCGATATAAATAGGGGTAggtattttttgaaagtgaaaat
                     g"
                     /listShort="S117"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(331518..331525)
                     /Source="Nicolas_upshift_promotors"
                     /id="U244"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.679320679320679"
                     /psig="0.679320679320679"
                     /xcortree=1717
                     /SigmaFactorBS="tcaagtgcttctgtgtagctcttgccaagttttaatagGTGA
                     TTATattcgtttccgatACCGATATAAATAGGGGTAggtattttttgaaagtgaaaat
                     g"
                     /listShort="S117"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(331911)
                     /Source="Nicolas_upshifts"
                     /id="D143"
                     /incds=0
                     /nref=1
                     /ntot=5
                     /MaxReadThrough="0.0291099999999993"
                     /MaxDrop="3.08474"
                     /score="-9.94728494"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U245"
                     /TUdmin=66
                     /isTUend="FALSE"
     CDS             complement(331964..332821)
                     /gene="ycgQ"
                     /locus_tag="BSU_03240"
                     /old_locus_tag="BSU03240"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388206.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03240"
                     /db_xref="EnsemblGenomes-Tr:CAB12118"
                     /db_xref="GOA:P94394"
                     /db_xref="InterPro:IPR015402"
                     /db_xref="SubtiList:BG12015"
                     /db_xref="UniProtKB/Swiss-Prot:P94394"
                     /translation="MFRLLVLMGFTFFFYHLHASGNLTKYINMKYAYLSFIAIFLLAI
                     LTAVQAYLFIKSPEKSGHHHDHDCGCGHDHEHDHEQNKPFYQRYLIYVVFLFPLVSGI
                     FFPIATLDSSIVKTKGFSFKAMESGDHYSQTQYLRPDASLYYAQDSYDKQMKQLFNKY
                     SSKKEISLTDDDFLKGMETIYNYPGEFLGRTIEFHGFAYKGNAINKNQLFVLRFGIIH
                     CIADSGVYGMLVEFPKDMDIKDDEWIHIKGTLASEYYQPFKSTLPVVKVTDWNTIKKP
                     DDPYVYRGF*"
     gene            complement(331964..332821)
                     /gene="ycgQ"
                     /locus_tag="BSU_03240"
                     /old_locus_tag="BSU03240"
     downshifts      complement(331977)
                     /Source="Nicolas_upshifts"
                     /id="D144"
                     /incds=0
                     /nref=48
                     /ntot=167
                     /MaxReadThrough="1.97725"
                     /MaxDrop="4.53007"
                     /score="-9.94728494"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U245"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(332826..333710)
                     /gene="ycgR"
                     /locus_tag="BSU_03250"
                     /old_locus_tag="BSU03250"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388207.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03250"
                     /db_xref="EnsemblGenomes-Tr:CAB12119"
                     /db_xref="GOA:P94395"
                     /db_xref="InterPro:IPR005524"
                     /db_xref="SubtiList:BG12016"
                     /db_xref="UniProtKB/Swiss-Prot:P94395"
                     /translation="MTAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMI
                     ARIMPKNRFLAVLFGALAGVLFPACECGIIPITRRLLLKGVPLHAGVAFMLTAPIINP
                     IVLFSTYIAFGNRWSVVFYRGGLALAVSLIIGVILSYQFKDNQLLKPDEPGHHHHHHG
                     TLLQKLGGTLRHAIDEFFSVGKYLIIGAFIAAAMQTYVKTSTLLAIGQNDVSSSLVMM
                     GLAFVLSLCSEVDAFIASSFSSTFSLGSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFL
                     LITYIVVIVLAGSLLVKG*"
     gene            complement(332826..333710)
                     /gene="ycgR"
                     /locus_tag="BSU_03250"
                     /old_locus_tag="BSU03250"
     upshifts        complement(333762)
                     /Source="Nicolas_upshifts"
                     /id="U245"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.566433566433566"
                     /psig="0.566433566433566"
                     /xcortree=2523
                     /SigmaFactorBS="tttggaatcctaaccaaagTGAAACGATcctttcccctcctc
                     CGTCAAACAAGCAGtgcctttttttctggtatcataagaaaggcagcttaacatgagc
                     g"
                     /listShort="ycgR, ycgQ"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(333767..333780)
                     /Source="Nicolas_upshift_promotors"
                     /id="U245"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.566433566433566"
                     /psig="0.566433566433566"
                     /xcortree=2523
                     /SigmaFactorBS="tttggaatcctaaccaaagTGAAACGATcctttcccctcctc
                     CGTCAAACAAGCAGtgcctttttttctggtatcataagaaaggcagcttaacatgagc
                     g"
                     /listShort="ycgR, ycgQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(333795..333803)
                     /Source="Nicolas_upshift_promotors"
                     /id="U245"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.566433566433566"
                     /psig="0.566433566433566"
                     /xcortree=2523
                     /SigmaFactorBS="tttggaatcctaaccaaagTGAAACGATcctttcccctcctc
                     CGTCAAACAAGCAGtgcctttttttctggtatcataagaaaggcagcttaacatgagc
                     g"
                     /listShort="ycgR, ycgQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(333810..334664)
                     /gene="ycgS"
                     /locus_tag="BSU_03260"
                     /old_locus_tag="BSU03260"
                     /EC_number="3.7.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aromatic hydrocarbon hydrolase"
                     /protein_id="NP_388208.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03260"
                     /db_xref="EnsemblGenomes-Tr:CAB12120"
                     /db_xref="GOA:P94396"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12017"
                     /db_xref="UniProtKB/Swiss-Prot:P94396"
                     /translation="MKRRVETITFDGGTLEYSVTGKGTPILVMHGGHSNCYEEFGYTA
                     LIEQGYSIITPSRPGYGRTSKEIGKSLANACRFYVKLLDHLQIESVHVIAISAGGPSG
                     ICFASHYPERVNTLTLQSAVTKEWLTPKDTEYKLGEILFRPPVEKWIWKLISSLNNAF
                     PRLMFRAMSPQFSTLPFQRIKSLMNEKDIEAFRKMNSRQRSGEGFLIDLSQTAAVSLK
                     DLQAIICPVLIMQSVYDGLVDLSHAHHAKEHIRGAVLCLLHSWGHLIWLGKEAAETGS
                     ILLGFLES*"
     gene            complement(333810..334664)
                     /gene="ycgS"
                     /locus_tag="BSU_03260"
                     /old_locus_tag="BSU03260"
     promotor_-10    complement(334683..334702)
                     /Source="Nicolas_upshift_promotors"
                     /id="U246"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.715284715284715"
                     /psig=1
                     /xcortree=1859
                     /SigmaFactorBS="gtatatcatatttcaagggcctttgtttattcatttcttcta
                     cCTTGtggtcaattgctgaAAACTCTATAATAGGCAAAAaccaattgggtgaaacaga
                     t"
                     /listShort="ycgS, ycgR"
                     /listLong="ycgQ"
                     /label="promotor_-10"
     upshifts        complement(334703)
                     /Source="Nicolas_upshifts"
                     /id="U246"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.715284715284715"
                     /psig=1
                     /xcortree=1859
                     /SigmaFactorBS="gtatatcatatttcaagggcctttgtttattcatttcttcta
                     cCTTGtggtcaattgctgaAAACTCTATAATAGGCAAAAaccaattgggtgaaacaga
                     t"
                     /listShort="ycgS, ycgR"
                     /listLong="ycgQ"
     promotor_-35    complement(334717..334720)
                     /Source="Nicolas_upshift_promotors"
                     /id="U246"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.715284715284715"
                     /psig=1
                     /xcortree=1859
                     /SigmaFactorBS="gtatatcatatttcaagggcctttgtttattcatttcttcta
                     cCTTGtggtcaattgctgaAAACTCTATAATAGGCAAAAaccaattgggtgaaacaga
                     t"
                     /listShort="ycgS, ycgR"
                     /listLong="ycgQ"
                     /label="promotor_-35"
     misc_feature    334754..334773
                     /Source="Nicolas_upshift_promotors"
                     /id="U247"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.762237762237762"
                     /psig="0.993006993006993"
                     /xcortree=2116
                     /SigmaFactorBS="ttcagcaattgaccacaaggtagaagaaatgaataaacaaag
                     gcccttgaaaTATGATATACTTTGTATTGAtattcattctcaattaaaactttgatat
                     a"
                     /listShort="S119, ycgT, S120"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-10    complement(334754..334772)
                     /Source="Nicolas_upshift_promotors"
                     /id="U248"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=774
                     /SigmaFactorBS="agccatccgtcctgcctcccgttcacatctatatcaaaGTTT
                     TAattgagaatgaatatCAATACAAAGTATATCATAtttcaagggcctttgtttattc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       334761..334825
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_352793_352857"
                     /HighExp="B60, Lbexp, LBGexp, dia0, B36, HiOs, GM 15, GM
                     10, Salt, dia5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S119"
     upshifts        334762
                     /Source="Nicolas_upshifts"
                     /id="U247"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.762237762237762"
                     /psig="0.993006993006993"
                     /xcortree=2116
                     /SigmaFactorBS="ttcagcaattgaccacaaggtagaagaaatgaataaacaaag
                     gcccttgaaaTATGATATACTTTGTATTGAtattcattctcaattaaaactttgatat
                     a"
                     /listShort="S119, ycgT, S120"
                     /GFF_Attribute="listLong"
     upshifts        complement(334771)
                     /Source="Nicolas_upshifts"
                     /id="U248"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=774
                     /SigmaFactorBS="agccatccgtcctgcctcccgttcacatctatatcaaaGTTT
                     TAattgagaatgaatatCAATACAAAGTATATCATAtttcaagggcctttgtttattc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(334788..334793)
                     /Source="Nicolas_upshift_promotors"
                     /id="U248"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=774
                     /SigmaFactorBS="agccatccgtcctgcctcccgttcacatctatatcaaaGTTT
                     TAattgagaatgaatatCAATACAAAGTATATCATAtttcaagggcctttgtttattc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             334826..335836
                     /gene="ffoR"
                     /locus_tag="BSU_03270"
                     /old_locus_tag="BSU03270"
                     /EC_number="1.18.1.-"
                     /EC_number="1.8.1.-"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16672620, 25826316"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16672620, 25826316;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur-regulated NADPH:ferredoxin oxidoreductase"
                     /protein_id="NP_388209.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03270"
                     /db_xref="EnsemblGenomes-Tr:CAB12121"
                     /db_xref="GOA:O31475"
                     /db_xref="InterPro:IPR000103"
                     /db_xref="InterPro:IPR022890"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG12018"
                     /db_xref="UniProtKB/Swiss-Prot:O31475"
                     /translation="MAENQEVYDVTIIGGGPIGLFTAFYCGMRELKTKVIEFLPKLGG
                     KVSLFFPEKIIRDIGGIPGIAGKQLIEQLKEQAATFDPDIVLNQRVTGFERLDDGTIV
                     LTGSEGKKHYTRTVILACGMGTLEVNEFDSEDAARYAGKNLHYGVEKLDAFKGKRVVI
                     SGGGDTAVDWANELEPIAASVTVVHRREEFGGMESSVTKMKQSSVRVLTPYRLEQLNG
                     DEEGIKSVTVCHTESGQRKDIEIDELIINHGFKIDLGPMMEWGLEIEEGRVKADRHMR
                     TNLPGVFVAGDAAFYESKLRLIAGGFTEGPTAVNSAKAYLDPKAENMAMYSTHHKKLV
                     HK*"
     gene            334826..335836
                     /gene="ffoR"
                     /locus_tag="BSU_03270"
                     /old_locus_tag="BSU03270"
     S_feature       335837..338284
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_353869_356316"
                     /HighExp="B60, Lbexp, GM 10, GM 25, HiOs, GM 15, dia0, GM
                     45, LBGexp, H2O2"
                     /AntisenseName="nasF"
                     /AntisenseCor="-0.30348565853404702"
                     /AntisenseRegPval="-6.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S120"
     CDS             complement(335868..337319)
                     /gene="nasF"
                     /locus_tag="BSU_03280"
                     /old_locus_tag="BSU03280"
                     /EC_number="2.1.1.107"
                     /function="16.10: Respire"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9765565, 10217486, 15028686"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9765565, 10217486,
                     15028686; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrin-III C-methyltransferase"
                     /protein_id="NP_388210.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03280"
                     /db_xref="EnsemblGenomes-Tr:CAB12122"
                     /db_xref="GOA:P42437"
                     /db_xref="InterPro:IPR000878"
                     /db_xref="InterPro:IPR003043"
                     /db_xref="InterPro:IPR006366"
                     /db_xref="InterPro:IPR012409"
                     /db_xref="InterPro:IPR014776"
                     /db_xref="InterPro:IPR014777"
                     /db_xref="InterPro:IPR035996"
                     /db_xref="InterPro:IPR036108"
                     /db_xref="SubtiList:BG11098"
                     /db_xref="UniProtKB/Swiss-Prot:P42437"
                     /translation="MIMKNGIVYFVGAGPGDPGLLTIKGKQALKEADVILYDRLANPK
                     LLEFASPDCQFIYCGKLPNRHFMKQKEINALLVEKALNGLTVVRLKGGDPSVFGRVGE
                     EADALHEHGIRYEMVPGITSGIAAPLYAGIPVTHRDFASSFAMITAHDKSLKGTPNLD
                     WEGLARSVQTLVFYMGVKNLSYICQQLISYGKSPSVPVIVIQWGTWGRQRSVKGTLEN
                     IQQKVQEHQITNPAIIVIGDIVNFQTHSWFESKPLIGRHLMVVTHGEDEDPLADKLRD
                     SGADLIEWPKWRTENMPVNEEILRKIGTFEDVFFTSRRAVCEFFRALASQKIDIRQLT
                     AKLSAASEQAKTELEKRGFLVTAIQPDSEKRLVVGSRHAVENMQKHESCSFYITHENV
                     IDDRFTHMIQRTISESPLHMVICPNKLSVQQLINGGEQIGILPEPSASRPPIVCIGDD
                     SAAGIYGFTAVQEQDELLAFIHNQHAEKKLLHT*"
     gene            complement(335868..337319)
                     /gene="nasF"
                     /locus_tag="BSU_03280"
                     /old_locus_tag="BSU03280"
     downshifts      complement(335872)
                     /Source="Nicolas_upshifts"
                     /id="D145"
                     /incds=0
                     /nref=131
                     /ntot=230
                     /MaxReadThrough="1.40657"
                     /MaxDrop="6.58881"
                     /score="10.9556399"
                     /energy="-11.7"
                     /TU="NA"
                     /idTUdmin="U250"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(337380..337700)
                     /gene="nasE"
                     /locus_tag="BSU_03290"
                     /old_locus_tag="BSU03290"
                     /EC_number="1.7.1.4"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10217486, 15028686, 9765565, 22103536"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10217486, 15028686,
                     9765565, 22103536; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory nitrite reductase subunit"
                     /protein_id="NP_388211.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03290"
                     /db_xref="EnsemblGenomes-Tr:CAB12123"
                     /db_xref="GOA:P42436"
                     /db_xref="InterPro:IPR012748"
                     /db_xref="InterPro:IPR017941"
                     /db_xref="InterPro:IPR036922"
                     /db_xref="SubtiList:BG11097"
                     /db_xref="UniProtKB/Swiss-Prot:P42436"
                     /translation="MVNKDVTKVCIGKIEELPEQLGKTVYIEDKELAVFKLSDGSIRA
                     IENRCPHKGGVLAEGIVSGQYVFCPMHDWKISLEDGIVQEPDHGCVKTYETLIEGEHV
                     YLVY*"
     gene            complement(337380..337700)
                     /gene="nasE"
                     /locus_tag="BSU_03290"
                     /old_locus_tag="BSU03290"
     promotor_-35    337551..337556
                     /Source="Nicolas_upshift_promotors"
                     /id="U249"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.965034965034965"
                     /psig="0.00899100899100899"
                     /xcortree=84
                     /SigmaFactorBS="tgacgatgccttctgccaggacgccgcccttatgCGGACAgc
                     ggttttcaatgGCGCGgatgcttccgtctgaaagcttgaaaaccgcgagctccttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    337570..337574
                     /Source="Nicolas_upshift_promotors"
                     /id="U249"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.965034965034965"
                     /psig="0.00899100899100899"
                     /xcortree=84
                     /SigmaFactorBS="tgacgatgccttctgccaggacgccgcccttatgCGGACAgc
                     ggttttcaatgGCGCGgatgcttccgtctgaaagcttgaaaaccgcgagctccttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        337577
                     /Source="Nicolas_upshifts"
                     /id="U249"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.965034965034965"
                     /psig="0.00899100899100899"
                     /xcortree=84
                     /SigmaFactorBS="tgacgatgccttctgccaggacgccgcccttatgCGGACAgc
                     ggttttcaatgGCGCGgatgcttccgtctgaaagcttgaaaaccgcgagctccttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     upshifts        complement(337609)
                     /Source="Nicolas_upshifts"
                     /id="U250"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig="0.957042957042957"
                     /xcortree=1590
                     /SigmaFactorBS="tcggaaaaattgaagaatTGCCTGAAcaattaggcaaaaCAG
                     TGTATATTGAAGATAAGgagctcgcggttttcaagctttcagacggaagcatccgcgc
                     c"
                     /listShort="nasF"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(337611..337630)
                     /Source="Nicolas_upshift_promotors"
                     /id="U250"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig="0.957042957042957"
                     /xcortree=1590
                     /SigmaFactorBS="tcggaaaaattgaagaatTGCCTGAAcaattaggcaaaaCAG
                     TGTATATTGAAGATAAGgagctcgcggttttcaagctttcagacggaagcatccgcgc
                     c"
                     /listShort="nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(337644..337651)
                     /Source="Nicolas_upshift_promotors"
                     /id="U250"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.853146853146853"
                     /psig="0.957042957042957"
                     /xcortree=1590
                     /SigmaFactorBS="tcggaaaaattgaagaatTGCCTGAAcaattaggcaaaaCAG
                     TGTATATTGAAGATAAGgagctcgcggttttcaagctttcagacggaagcatccgcgc
                     c"
                     /listShort="nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(337732..340149)
                     /gene="nasD"
                     /locus_tag="BSU_03300"
                     /old_locus_tag="BSU03300"
                     /EC_number="1.7.1.4"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10972836, 15028686, 9765565, 16428414, 22103536"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10972836, 15028686,
                     9765565, 16428414, 22103536; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory nitrite reductase subunit"
                     /protein_id="NP_388212.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03300"
                     /db_xref="EnsemblGenomes-Tr:CAB12124"
                     /db_xref="GOA:P42435"
                     /db_xref="InterPro:IPR005117"
                     /db_xref="InterPro:IPR006066"
                     /db_xref="InterPro:IPR006067"
                     /db_xref="InterPro:IPR007419"
                     /db_xref="InterPro:IPR012744"
                     /db_xref="InterPro:IPR017121"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036136"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG11096"
                     /db_xref="UniProtKB/Swiss-Prot:P42435"
                     /translation="MGKKQLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYN
                     RILLSKVLQGDTDIKDITLNDWDWYEENNIQLYTNETVIKVDTENKTVITDADRIQPY
                     DELILATGSVPFILPIPGADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEA
                     ARGLLNLGMDVSVIHLAPFLMERQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDR
                     VEGLRFKDGTSIEADLVVMAVGIRPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVG
                     ECAEHRGIAYGLVAPLYEQAKVLAKHMCGIETKPYEGSVLSTQLKVSGVEVFSAGDFN
                     ESEEKKAIKVFDEQDGIYKKIVLRGNQIVGAVLFGDSSEGNRLFSMIQKEADISETSK
                     ISILQPLSQEAGTSITAAMSDDEIICGCNGVSKGAIIQAIQEKGCSSTDEIKACTGAS
                     RSCGGCKPLVEEILQHTLGSDFDASAQKEAICGCTTLSRDEVVEEIKAKGLSHTREVM
                     NVLGWKTPEGCSKCRPALNYYLGMINPTKYEDDRTSRFVNERMHANIQKDGTYSVVPR
                     MYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRIDLIGVKKEDLPKVWEDLDMPSGYA
                     YGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKKFEGLNTPHKVKMAVSACPRNCAES
                     GIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTNEEVLEYAGAYLQYYRETANY
                     LERTSAWLERVGLSHVQSVLNDPEKRQELNGRMNETLSVHKDPWKDFLEDKQTSKELF
                     ENVVTTS*"
     gene            complement(337732..340149)
                     /gene="nasD"
                     /locus_tag="BSU_03300"
                     /old_locus_tag="BSU03300"
     promotor_-10    complement(340174..340193)
                     /Source="Nicolas_upshift_promotors"
                     /id="U251"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1620
                     /SigmaFactorBS="cttttcgtatattttgttacattttataacatgtatcTTAAA
                     TAttcctttttgcTGTGCTACGCTGGAAAAAACatttgataaggagcggatcatctga
                     t"
                     /listShort="nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(340188)
                     /Source="Nicolas_upshifts"
                     /id="U251"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1620
                     /SigmaFactorBS="cttttcgtatattttgttacattttataacatgtatcTTAAA
                     TAttcctttttgcTGTGCTACGCTGGAAAAAACatttgataaggagcggatcatctga
                     t"
                     /listShort="nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(340205..340211)
                     /Source="Nicolas_upshift_promotors"
                     /id="U251"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1620
                     /SigmaFactorBS="cttttcgtatattttgttacattttataacatgtatcTTAAA
                     TAttcctttttgcTGTGCTACGCTGGAAAAAACatttgataaggagcggatcatctga
                     t"
                     /listShort="nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(340271..342403)
                     /gene="nasC"
                     /locus_tag="BSU_03310"
                     /old_locus_tag="BSU03310"
                     /EC_number="1.7.99.4"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10972836, 15028686, 9765565"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10972836, 15028686,
                     9765565; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory nitrate reductase (catalytic
                     subunit)"
                     /protein_id="NP_388213.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03310"
                     /db_xref="EnsemblGenomes-Tr:CAB12125"
                     /db_xref="GOA:P42434"
                     /db_xref="InterPro:IPR006655"
                     /db_xref="InterPro:IPR006656"
                     /db_xref="InterPro:IPR006657"
                     /db_xref="InterPro:IPR006963"
                     /db_xref="InterPro:IPR009010"
                     /db_xref="InterPro:IPR027467"
                     /db_xref="SubtiList:BG11095"
                     /db_xref="UniProtKB/Swiss-Prot:P42434"
                     /translation="MTERLLRYFRDKQQDVQSEKTYDTQCPFCSMQCKMQLVEQTIVT
                     RKKYTAIGIDNPTTQGRLCIKGMNAHQHALNSSRITRPLLKKNGEFMPVSWEEALNHI
                     KDQVTMIQTEHGHDAMAVYGSASITNEEAYLLGKFARVGLQTKYIDYNGRLCMSAAAT
                     AANQTFGADRGLTNPLSDIPHTRVIILAGTNIAECQPTIMPYFEKAKENGAYFIAIDP
                     RETATTKIADLHLKIKPGTDAALANGLVKIIIDEQLINEDFIQSRTNGFEELKQHTDS
                     LDLNDIAEQTSVSLVDIRKAAVKFAKETSGMLFTARGIEQQTDGTAAVKGFLNMVLIT
                     GKIGKPYSGYGAITGQGNGQGAREHGQKADQLPGYRSIENEEHRAHIAKVWGIHQDEL
                     PRKGVSAYEMMEKINDGDIKGLFLMCSNPAVSSPNANLVKKALRRLTFFVAIDLFISE
                     TAKYADVILPASSYLEDEGTMTNVEGRVTLREASRPCPGEAKHDWQIICDLASALGKG
                     RYFSYTSAEDIFNELREASRGGIADYSGISYGRLRREGGIHWPCPESDHPGTGRLFTE
                     SFAHPDQKAALSVIPNEPPVPKEKPTADYPLYLTTGRVMSHYLTGVQTRKSAALAARH
                     FESFMEIHPQTAATYNIEDRVLVKIESPRGSITVRSKLSEQIRKDTVFVPIHWADAQN
                     VNDLIGEALDPACKMPGFKVCAVRIIPI*"
     gene            complement(340271..342403)
                     /gene="nasC"
                     /locus_tag="BSU_03310"
                     /old_locus_tag="BSU03310"
     CDS             complement(342410..344725)
                     /gene="nasB"
                     /locus_tag="BSU_03320"
                     /old_locus_tag="BSU03320"
                     /EC_number="1.7.1.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7836289, 8799114, 9765565, 10940050, 10972836,
                     15028686, 24122235"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7836289, 8799114,
                     9765565, 10940050, 10972836, 15028686, 24122235; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory nitrate reductase (electron
                     transfer subunit NasB)"
                     /protein_id="NP_388214.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03320"
                     /db_xref="EnsemblGenomes-Tr:CAB12126"
                     /db_xref="GOA:P42433"
                     /db_xref="InterPro:IPR005117"
                     /db_xref="InterPro:IPR007419"
                     /db_xref="InterPro:IPR012744"
                     /db_xref="InterPro:IPR017121"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036136"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG11094"
                     /db_xref="UniProtKB/Swiss-Prot:P42433"
                     /translation="MKKQRLVLAGNGMAGIRCIEEVLKLNRHMFEIVIFGSEPHPNYN
                     RILLSSVLQGEASLDDITLNSKDWYDKHGITLYTGETVIQIDTDQQQVITDRKRTLSY
                     DKLIVATGSSPHILPIPGADKKGVYGFRTIEDCQALMNMAQHFQKAAVIGAGLLGLEA
                     AVGLQHLGMDVSVIHHSAGIMQKQLDQTAARLLQTELEQKGLTFLLEKDTVSISGATK
                     ADRIHFKDGSSLKADLIVMAAGVKPNIELAVSAGIKVNRGIIVNDFMQTSEPNIYAVG
                     ECAEHNGTVYGLVAPLYEQGKALASHICGVPCEEYQGSAPSAALKIAGIDVWSAGKIQ
                     EDERTTSIKIYDEQAGVYKKALFVDDKLAGVILFGDTRDKQRLLDSLLKQRDISIAKK
                     QIIEPETSGPLFESMPSSETICQCNTVTKGAIEDAVHTNSLTTVEEVKHCTKATGSCG
                     GCKPLVEDLLRYMTNSEYTKPASTPSFCSCTDFTEDDIIAELQRRPFTNPAEVMNQLD
                     WKTKNGCSTCVPAIQYYLEMLYPGFVQPEPATEETCILIPQMYGGRTNAEQLRTIANI
                     IEAYSIPDVSITHGQRLKLSGIKPADLPNMKKDLKMPVYTNEHRHALQSIKACTCGQN
                     RSIQQLAAQIERQLEMLPLPAPISISLSCETDCTEAALQDVGAIRTQAGWDIHIGGVR
                     GTHARSGALFCVTENEDSTAGMIKGLIQYYRETAHYLEGVHQWIDRLGIVHIREVLFE
                     EDLRAQLLESLQTDLSLIQNPTVETGAYKKG*"
     gene            complement(342410..344725)
                     /gene="nasB"
                     /locus_tag="BSU_03320"
                     /old_locus_tag="BSU03320"
     promotor_no_box complement(344744..344844)
                     /Source="Nicolas_upshift_promotors"
                     /id="U252"
                     /multdbtbs="SigA"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.241758241758242"
                     /psig="0.410589410589411"
                     /xcortree=313
                     /SigmaFactorBS="ttattttctggaaaagacatgtgtaagtttttgtgacacgtt
                     taatgcgttaacaatgcattgtgacataatttttaataggagaaaacttacgagcttc
                     g"
                     /listShort="nasB, nasC, nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(344784)
                     /Source="Nicolas_upshifts"
                     /id="U252"
                     /multdbtbs="SigA"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.241758241758242"
                     /psig="0.410589410589411"
                     /xcortree=313
                     /SigmaFactorBS="ttattttctggaaaagacatgtgtaagtttttgtgacacgtt
                     taatgcgttaacaatgcattgtgacataatttttaataggagaaaacttacgagcttc
                     g"
                     /listShort="nasB, nasC, nasD, nasE, nasF"
                     /GFF_Attribute="listLong"
     promotor_-35    344827..344834
                     /Source="Nicolas_upshift_promotors"
                     /id="U253"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.613386613386613"
                     /psig="0.928071928071928"
                     /xcortree=319
                     /SigmaFactorBS="ttaaacgtgtcacaaaaacttacacatGTCTTTTCcagaaaa
                     taatggTCCTATATCCTTGATTCAGAaaatgtaaaataatgagggtctagaaagggga
                     a"
                     /listShort="nasA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    344848..344867
                     /Source="Nicolas_upshift_promotors"
                     /id="U253"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.613386613386613"
                     /psig="0.928071928071928"
                     /xcortree=319
                     /SigmaFactorBS="ttaaacgtgtcacaaaaacttacacatGTCTTTTCcagaaaa
                     taatggTCCTATATCCTTGATTCAGAaaatgtaaaataatgagggtctagaaagggga
                     a"
                     /listShort="nasA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        344860
                     /Source="Nicolas_upshifts"
                     /id="U253"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.613386613386613"
                     /psig="0.928071928071928"
                     /xcortree=319
                     /SigmaFactorBS="ttaaacgtgtcacaaaaacttacacatGTCTTTTCcagaaaa
                     taatggTCCTATATCCTTGATTCAGAaaatgtaaaataatgagggtctagaaagggga
                     a"
                     /listShort="nasA"
                     /GFF_Attribute="listLong"
     CDS             344905..346110
                     /gene="nasA"
                     /locus_tag="BSU_03330"
                     /old_locus_tag="BSU03330"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7868621, 12823818,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative nitrate transporter"
                     /protein_id="NP_388215.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03330"
                     /db_xref="EnsemblGenomes-Tr:CAB12127"
                     /db_xref="GOA:P42432"
                     /db_xref="InterPro:IPR004737"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG11093"
                     /db_xref="UniProtKB/Swiss-Prot:P42432"
                     /translation="MKLSELKTSGHPLTLLCSFLYFDVSFMIWVMLGALGVYISQDFG
                     LSPFEKGLVVAVPILSGSVFRIILGILTDRIGPKKTAVIGMLVTMIPLLWGTFGGRSL
                     TELYAIGILLGVAGASFAVALPMASRWYPPHLQGLAMGIAGAGNSGTLFATLFGPRLA
                     EQFGWHIVMGIALIPLLIVFILFVSMAKDSPAQPSPQPLKSYLHVFGQKETWFFCLLY
                     SVTFGGFVGLSSFLSIFFVDQYQLSKIHAGDFVTLCVAAGSFFRPVGGLISDRVGGTK
                     VLSVLFVIVALCMAGVSSLPSLSMVIVLLFVGMMGLGMGNGAVFQLVPQRFRKEIGMV
                     TGIVGAAGGIGGFFLPNILGSLKQMTGTYAIGFITFSCIALLAFALVLAAGYYWRKSW
                     SAESSPADV*"
     gene            344905..346110
                     /gene="nasA"
                     /locus_tag="BSU_03330"
                     /old_locus_tag="BSU03330"
     downshifts      346095
                     /Source="Nicolas_upshifts"
                     /id="D146"
                     /incds=0
                     /nref=1
                     /ntot=3
                     /MaxReadThrough="2.02479"
                     /MaxDrop="3.6823"
                     /score="39.2612286"
                     /energy="-11.9"
                     /TU="NA"
                     /idTUdmin="U253"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    346154..346160
                     /Source="Nicolas_upshift_promotors"
                     /id="U254"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.362637362637363"
                     /psig="0.998001998001998"
                     /xcortree=667
                     /SigmaFactorBS="cacgcgtttgtgcgtgtcttttttattttctCTTGATTttca
                     acagtgaaccGATCAAAATAAATAGTAATTattacgatttgttagtgagaggagtttt
                     c"
                     /listShort="folEB, yciB"
                     /listLong="yczL, yciC"
                     /label="promotor_-35"
     promotor_-10    346175..346194
                     /Source="Nicolas_upshift_promotors"
                     /id="U254"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.362637362637363"
                     /psig="0.998001998001998"
                     /xcortree=667
                     /SigmaFactorBS="cacgcgtttgtgcgtgtcttttttattttctCTTGATTttca
                     acagtgaaccGATCAAAATAAATAGTAATTattacgatttgttagtgagaggagtttt
                     c"
                     /listShort="folEB, yciB"
                     /listLong="yczL, yciC"
                     /label="promotor_-10"
     upshifts        346183
                     /Source="Nicolas_upshifts"
                     /id="U254"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.362637362637363"
                     /psig="0.998001998001998"
                     /xcortree=667
                     /SigmaFactorBS="cacgcgtttgtgcgtgtcttttttattttctCTTGATTttca
                     acagtgaaccGATCAAAATAAATAGTAATTattacgatttgttagtgagaggagtttt
                     c"
                     /listShort="folEB, yciB"
                     /listLong="yczL, yciC"
     CDS             346227..347141
                     /gene="folEB"
                     /locus_tag="BSU_03340"
                     /old_locus_tag="BSU03340"
                     /EC_number="3.5.4.16"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12426338, 17032654, 19767425"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12426338, 17032654,
                     19767425; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="NP_388216.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03340"
                     /db_xref="EnsemblGenomes-Tr:CAB12128"
                     /db_xref="GOA:P94398"
                     /db_xref="InterPro:IPR003801"
                     /db_xref="InterPro:IPR022838"
                     /db_xref="SubtiList:BG12019"
                     /db_xref="UniProtKB/Swiss-Prot:P94398"
                     /translation="MNQHTLLPKKTERLQYFGSVSPIKGEKPVEKEKMKDLQNIRKDY
                     FFDIQHVGVANVSHPVTITSAMMPAEQTTAANFTMTCNLPRNQKGINMSRLTELLQVY
                     HQNGWILSFSSLQQFTKELAENMDTSSATVEVRFPWFFERKSPKLEKAGLMHADIFMS
                     VTYRKDQPFKQRAGISAKVTTLCPCSKEISEYSAHNQRGTVSIWADIHPAASLPSDVK
                     ADLLHAAESNASARLHPVLKRPDEKAVTETAYENPRFVEDLARLIAADLFELEWVSAF
                     EIECRNEESIHLHDAYAKLCFSKEVDKI*"
     gene            346227..347141
                     /gene="folEB"
                     /locus_tag="BSU_03340"
                     /old_locus_tag="BSU03340"
     CDS             347138..347722
                     /gene="yciB"
                     /locus_tag="BSU_03350"
                     /old_locus_tag="BSU03350"
                     /function="16.1: Circulate"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12426338, 20013255;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Zn(2+)-dependent division lipoprotein
                     (schizosome)"
                     /protein_id="NP_388217.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03350"
                     /db_xref="EnsemblGenomes-Tr:CAB12129"
                     /db_xref="GOA:C0SP99"
                     /db_xref="InterPro:IPR005490"
                     /db_xref="SubtiList:BG12020"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP99"
                     /translation="MKLSLFIIAVLMPVILLSACSDHAEEHASINTKKTVENITDVRK
                     TAKTSIDWTKPSGGEYPDIKQKHVWIDVNVKEQKAYIKEGSNTIYTMMISSGLDQTKD
                     DATPKGTFYVEPERGEWFFSEGYQEGAEYWVSWKNHGEFLFHSVPMTKDQKVIKTEAE
                     KLGTKASHGCIRLTIPDAKWVYENIPEHTKVVIS*"
     gene            347138..347722
                     /gene="yciB"
                     /locus_tag="BSU_03350"
                     /old_locus_tag="BSU03350"
     promotor_-35    347733..347740
                     /Source="Nicolas_upshift_promotors"
                     /id="U255"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=668
                     /SigmaFactorBS="aaaagtggtgatcagctgaattgaaaaccGTTGACAAaaagg
                     aaaaaagaCCATACAATTTAAATCGTAAcaattacgttttatgataaatggcttatca
                     t"
                     /listShort="yczL, yciC, S121"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    347754..347773
                     /Source="Nicolas_upshift_promotors"
                     /id="U255"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=668
                     /SigmaFactorBS="aaaagtggtgatcagctgaattgaaaaccGTTGACAAaaagg
                     aaaaaagaCCATACAATTTAAATCGTAAcaattacgttttatgataaatggcttatca
                     t"
                     /listShort="yczL, yciC, S121"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        347764
                     /Source="Nicolas_upshifts"
                     /id="U255"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=668
                     /SigmaFactorBS="aaaagtggtgatcagctgaattgaaaaccGTTGACAAaaagg
                     aaaaaagaCCATACAATTTAAATCGTAAcaattacgttttatgataaatggcttatca
                     t"
                     /listShort="yczL, yciC, S121"
                     /GFF_Attribute="listLong"
     CDS             347818..348003
                     /gene="yczL"
                     /locus_tag="BSU_03359"
                     /old_locus_tag="BSU03359"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097674.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03359"
                     /db_xref="EnsemblGenomes-Tr:CAX52544"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3U7"
                     /translation="MKSGKASIKDLAVGKGKDLRWGKGLNAVGVFTDLEIGRQREMSA
                     KSCSTPLYIRRSIQFKS*"
     gene            347818..348003
                     /gene="yczL"
                     /locus_tag="BSU_03359"
                     /old_locus_tag="BSU03359"
     CDS             348031..349224
                     /gene="zinU"
                     /locus_tag="BSU_03360"
                     /old_locus_tag="BSU03360"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:2013568, 9811636, 12426338, 18344368, 19648245,
                     27060116, 27561249"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2013568, 9811636,
                     12426338, 18344368, 19648245, 27060116, 27561249; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metallochaperone with NTPase activity"
                     /protein_id="NP_388218.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03360"
                     /db_xref="EnsemblGenomes-Tr:CAB12130"
                     /db_xref="GOA:P94400"
                     /db_xref="InterPro:IPR003495"
                     /db_xref="InterPro:IPR011629"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036627"
                     /db_xref="SubtiList:BG12021"
                     /db_xref="UniProtKB/Swiss-Prot:P94400"
                     /translation="MKKIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVN
                     IDAGLVKQEGGLSRTDEKLVEMSNGCICCTLREDLLIEVEKLAKDGRFDYIVIESTGI
                     SEPIPVAQTFSYIDEEMGIDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGE
                     KDEREIADLLIDQIEFCDVLILNKCDLVSEQELEQLENVLRKLQPRARFIRSVKGNVK
                     PQEILHTGLFNFEEASGSAGWIQELTAGHAEHTPETEEYGISSFVYKRRLPFHSTRFY
                     RWLDQMPKNVVRAKGIVWCASHNNLALLMSQAGPSVTIEPVSYWVAALPKLEQEQVKQ
                     QEPEILEEWDPEFGDRLTQLVFIGTDLDEETITKELDQCLLTEYEFDSDWSLFEDPFK
                     WKLNQ*"
     gene            348031..349224
                     /gene="zinU"
                     /locus_tag="BSU_03360"
                     /old_locus_tag="BSU03360"
     downshifts      349216
                     /Source="Nicolas_upshifts"
                     /id="D147"
                     /incds=0
                     /nref=26
                     /ntot=45
                     /MaxReadThrough="5.12378"
                     /MaxDrop="5.8275"
                     /score="15.6427627"
                     /energy="-9.2"
                     /TU="U255"
                     /idTUdmin="U255"
                     /TUdmin="-792"
                     /isTUend="FALSE"
     S_feature       349261..350930
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_367293_368962"
                     /HighExp="Etha, B60, Cold, Heat, B36, C30, BMM, S6, C90,
                     S2"
                     /AntisenseName="yckB"
                     /AntisenseCor="-0.170121935628575"
                     /AntisenseRegPval="-2.2999999999999998"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S121"
     CDS             complement(349273..349953)
                     /gene="yckA"
                     /locus_tag="BSU_03370"
                     /old_locus_tag="BSU03370"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15849754, 16850406,
                     23038252; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacid ABC transporter (permease subunit)"
                     /protein_id="NP_388219.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03370"
                     /db_xref="EnsemblGenomes-Tr:CAB12131"
                     /db_xref="GOA:P42399"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR010065"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11177"
                     /db_xref="UniProtKB/Swiss-Prot:P42399"
                     /translation="MINSIQWEYIFNTKLAIESFPYVIKGIGYTLLISFVSMFAGTVI
                     GLFISLARMSKLALLRWPAKLYISFMRGVPILVILFILYFGFPYIGIEFSAVTAALIG
                     FSLNSAAYIAEINRSAISSVEKGQWEAASSLGLSYWQTMRGIILPQSIRIALPPLANV
                     LLDLIKASSLAAMITVPELLQHAKIIGGREFDYMTMYILTALIYWAICSIAAVFQNIL
                     EKKYAHYV*"
     gene            complement(349273..349953)
                     /gene="yckA"
                     /locus_tag="BSU_03370"
                     /old_locus_tag="BSU03370"
     downshifts      complement(349279)
                     /Source="Nicolas_upshifts"
                     /id="D148"
                     /incds=0
                     /nref=101
                     /ntot=231
                     /MaxReadThrough="0.41655"
                     /MaxDrop="6.18136"
                     /score="40.1548023"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U256"
                     /TUdmin="-9"
                     /isTUend="TRUE"
     CDS             complement(349963..350826)
                     /gene="yckB"
                     /locus_tag="BSU_03380"
                     /old_locus_tag="BSU03380"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:23038252"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23038252; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter (binding lipoprotein
                     subunit)"
                     /protein_id="NP_388220.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03380"
                     /db_xref="EnsemblGenomes-Tr:CAB12132"
                     /db_xref="GOA:P42400"
                     /db_xref="InterPro:IPR001638"
                     /db_xref="InterPro:IPR018313"
                     /db_xref="PDB:2IEE"
                     /db_xref="SubtiList:BG11178"
                     /db_xref="UniProtKB/Swiss-Prot:P42400"
                     /translation="MKSFMHSKAVIFSFTMAFFLILAACSGKNEADSKDTGWEQIKDK
                     GKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTA
                     VNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAA
                     GAATTVYMEVARKYGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDL
                     NITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSK
                     KIDADVQDVDL*"
     gene            complement(349963..350826)
                     /gene="yckB"
                     /locus_tag="BSU_03380"
                     /old_locus_tag="BSU03380"
     promotor_-10    complement(350848..350867)
                     /Source="Nicolas_upshift_promotors"
                     /id="U256"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.983016983016983"
                     /xcortree=1804
                     /SigmaFactorBS="caattcgaactttttgaaaacgcgatcaacaTATTGCAAccc
                     cttatgttcaaTGCTATCTTTTTAGTTGATTaacagattgggggaactataggtgaaa
                     t"
                     /listShort="yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(350860)
                     /Source="Nicolas_upshifts"
                     /id="U256"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.983016983016983"
                     /xcortree=1804
                     /SigmaFactorBS="caattcgaactttttgaaaacgcgatcaacaTATTGCAAccc
                     cttatgttcaaTGCTATCTTTTTAGTTGATTaacagattgggggaactataggtgaaa
                     t"
                     /listShort="yckB, yckA"
                     /GFF_Attribute="listLong"
     S_feature       complement(350862..353696)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_368894_371728_c"
                     /HighExp="GM 150, T-4.40H, G/S, Pyr, S2, C30, T-5.40H,
                     C90, T-3.40H, T0.30H"
                     /AntisenseName="bglC"
                     /AntisenseCor="-0.37749573319969598"
                     /AntisenseRegPval="-9.8000000000000007"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, Sig-"
                     /TUshortPSig="0.248, 0.994, 0.0879"
                     /TUlongSig="SigD"
                     /TUlongPSig=1
                     /label="S122"
     promotor_-35    complement(350882..350889)
                     /Source="Nicolas_upshift_promotors"
                     /id="U256"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.983016983016983"
                     /xcortree=1804
                     /SigmaFactorBS="caattcgaactttttgaaaacgcgatcaacaTATTGCAAccc
                     cttatgttcaaTGCTATCTTTTTAGTTGATTaacagattgggggaactataggtgaaa
                     t"
                     /listShort="yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    350899..350905
                     /Source="Nicolas_upshift_promotors"
                     /id="U257"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=154
                     /SigmaFactorBS="acataaggggttgcaatatgttgatcgCGTTTTCaaaaagtt
                     cgaattGTGTATACAAAAAGCATGGgtgggtgtttaaaagcgtctatgaagggaagag
                     g"
                     /listShort="S123, yckC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    350920..350938
                     /Source="Nicolas_upshift_promotors"
                     /id="U257"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=154
                     /SigmaFactorBS="acataaggggttgcaatatgttgatcgCGTTTTCaaaaagtt
                     cgaattGTGTATACAAAAAGCATGGgtgggtgtttaaaagcgtctatgaagggaagag
                     g"
                     /listShort="S123, yckC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       350932..351154
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_368964_369186"
                     /HighExp="Etha, Salt, B60, Sw, B36, Gly, Heat, S6, Cold,
                     S7"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99896700000000005"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S123"
     upshifts        350932
                     /Source="Nicolas_upshifts"
                     /id="U257"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=154
                     /SigmaFactorBS="acataaggggttgcaatatgttgatcgCGTTTTCaaaaagtt
                     cgaattGTGTATACAAAAAGCATGGgtgggtgtttaaaagcgtctatgaagggaagag
                     g"
                     /listShort="S123, yckC"
                     /GFF_Attribute="listLong"
     CDS             350988..351185
                     /locus_tag="BSU_03385"
                     /old_locus_tag="BSU03385"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513942.1"
                     /translation="MSKDECQTYQGNACESEGCSRPVTHLCQYRKKWSRGMKPIFRIN
                     LSLADAPKAYDIFDEKENGNI*"
     gene            350988..351185
                     /locus_tag="BSU_03385"
                     /old_locus_tag="BSU03385"
     promotor_-35    351123..351128
                     /Source="Nicolas_upshift_promotors"
                     /id="U258"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=779
                     /SigmaFactorBS="atgaaaccgatcttcagaataaatttaAGTCTTgctgatgcc
                     cctaagGCATATGATATATTCGATGagaaagaaaatggaaacatttaaaccataatgg
                     g"
                     /listShort="yckC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    351144..351162
                     /Source="Nicolas_upshift_promotors"
                     /id="U258"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=779
                     /SigmaFactorBS="atgaaaccgatcttcagaataaatttaAGTCTTgctgatgcc
                     cctaagGCATATGATATATTCGATGagaaagaaaatggaaacatttaaaccataatgg
                     g"
                     /listShort="yckC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        351156
                     /Source="Nicolas_upshifts"
                     /id="U258"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=779
                     /SigmaFactorBS="atgaaaccgatcttcagaataaatttaAGTCTTgctgatgcc
                     cctaagGCATATGATATATTCGATGagaaagaaaatggaaacatttaaaccataatgg
                     g"
                     /listShort="yckC"
                     /GFF_Attribute="listLong"
     CDS             351204..351659
                     /gene="yckC"
                     /locus_tag="BSU_03390"
                     /old_locus_tag="BSU03390"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15849754, 16850406; Product type
                     m:membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved integral membrane protein of unknown
                     function"
                     /protein_id="NP_388221.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03390"
                     /db_xref="EnsemblGenomes-Tr:CAB12133"
                     /db_xref="GOA:P42401"
                     /db_xref="InterPro:IPR010432"
                     /db_xref="SubtiList:BG11179"
                     /db_xref="UniProtKB/Swiss-Prot:P42401"
                     /translation="MNIYKPAGFWIRLGAALLDYIIVSVPLLLIYWLITGKDPNDSMF
                     ISLVVLLYSILLPMFWRGYLIGKRICGIRIVKKDGSQVSLLTMFLRVIVAGLVYCITF
                     GLGLIASLILIAVREDKRTLHDLIAGTYVTYATPGEEELNADEEIRKSE*"
     gene            351204..351659
                     /gene="yckC"
                     /locus_tag="BSU_03390"
                     /old_locus_tag="BSU03390"
     downshifts      351634
                     /Source="Nicolas_upshifts"
                     /id="D149"
                     /incds=0
                     /nref=40
                     /ntot=193
                     /MaxReadThrough="1.14817"
                     /MaxDrop="5.48303"
                     /score="23.1539807"
                     /energy="-9.8"
                     /TU="NA"
                     /idTUdmin="U257"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     promotor_-35    351682..351688
                     /Source="Nicolas_upshift_promotors"
                     /id="U259"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=899
                     /SigmaFactorBS="cgaagagattagaaagagcgaataatggttcgctctttttat
                     ttttaTGCATAAaaaatacaaggcaGCAAAACATATGaaaaataggattggaggaata
                     a"
                     /listShort="yckD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        351695
                     /Source="Nicolas_upshifts"
                     /id="U259"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=899
                     /SigmaFactorBS="cgaagagattagaaagagcgaataatggttcgctctttttat
                     ttttaTGCATAAaaaatacaaggcaGCAAAACATATGaaaaataggattggaggaata
                     a"
                     /listShort="yckD"
                     /GFF_Attribute="listLong"
     promotor_-10    351702..351713
                     /Source="Nicolas_upshift_promotors"
                     /id="U259"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=899
                     /SigmaFactorBS="cgaagagattagaaagagcgaataatggttcgctctttttat
                     ttttaTGCATAAaaaatacaaggcaGCAAAACATATGaaaaataggattggaggaata
                     a"
                     /listShort="yckD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             351741..352073
                     /gene="yckD"
                     /locus_tag="BSU_03400"
                     /old_locus_tag="BSU03400"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_388222.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03400"
                     /db_xref="EnsemblGenomes-Tr:CAB12134"
                     /db_xref="InterPro:IPR024485"
                     /db_xref="SubtiList:BG11180"
                     /db_xref="UniProtKB/Swiss-Prot:P42402"
                     /translation="MKRITINIITMFIAAAVISLTGTAEAAEKQQQSPANVTLTDQQK
                     KEIEQLEAEILKKRKDVISKYVQYGILPKERGEHIKNHLDKHFEMMKQNGFVPKHHPH
                     PHKFEKRH*"
     gene            351741..352073
                     /gene="yckD"
                     /locus_tag="BSU_03400"
                     /old_locus_tag="BSU03400"
     downshifts      352054
                     /Source="Nicolas_upshifts"
                     /id="D150"
                     /incds=0
                     /nref=20
                     /ntot=44
                     /MaxReadThrough="2.48743"
                     /MaxDrop="4.3022"
                     /score="-1.40416926"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U259"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    352159..352166
                     /Source="Nicolas_upshift_promotors"
                     /id="U260"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.953046953046953"
                     /xcortree=1581
                     /SigmaFactorBS="caatattagctgagctgttccgcgactaacatcGAGTTGATa
                     tgaaacgcgtttcaTAGCCTATGATAGGTTTATCaaataattcaggagtgataaacac
                     t"
                     /listShort="bglC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    352182..352201
                     /Source="Nicolas_upshift_promotors"
                     /id="U260"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.953046953046953"
                     /xcortree=1581
                     /SigmaFactorBS="caatattagctgagctgttccgcgactaacatcGAGTTGATa
                     tgaaacgcgtttcaTAGCCTATGATAGGTTTATCaaataattcaggagtgataaacac
                     t"
                     /listShort="bglC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        352186
                     /Source="Nicolas_upshifts"
                     /id="U260"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.953046953046953"
                     /xcortree=1581
                     /SigmaFactorBS="caatattagctgagctgttccgcgactaacatcGAGTTGATa
                     tgaaacgcgtttcaTAGCCTATGATAGGTTTATCaaataattcaggagtgataaacac
                     t"
                     /listShort="bglC"
                     /GFF_Attribute="listLong"
     CDS             352227..353660
                     /gene="bglC"
                     /locus_tag="BSU_03410"
                     /old_locus_tag="BSU03410"
                     /EC_number="3.2.1.86"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14652714, 15139916, 18069788"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14652714, 15139916,
                     18069788; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-phospho-beta-d-glucosidase"
                     /protein_id="NP_388223.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03410"
                     /db_xref="EnsemblGenomes-Tr:CAB12135"
                     /db_xref="GOA:P42403"
                     /db_xref="InterPro:IPR001360"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR018120"
                     /db_xref="InterPro:IPR033132"
                     /db_xref="SubtiList:BG11181"
                     /db_xref="UniProtKB/Swiss-Prot:P42403"
                     /translation="MIHQHPESFPKHFLWGSASAAYQIEGAWNEDGKGPSVWDVFTKI
                     PGKTFKGTNGEIAVDHYHRFKEDVALMAEMGLKAYRFSVSWPRVFPKGKGEINEAGLA
                     FYDSLIDELLSHHIEPVLTLYHWDLPQALMDEYGGFESRNIIEDFNHYCITLYKRFGD
                     RVKYWVTLNEQNYNFNHGFITAMHPPGVKDRKRFYEANHIAFLANAKAIESFREYVPE
                     GKIGPSFAYSPAYPLSSHPEDILAFENAEEFTNNWWLDMYCWGTYPQIPFRCLEKQGW
                     APTIEAGDMDLLAKGKPDFVGVNYYQTITYERNPLDGVSEGKMNTTGQKGTNQETGIP
                     GVFKTKKNPHLTTSNWDWTIDPIGLRIGLRRITSRYQLPVFITENGLGEFDKVEDGTV
                     QDDYRIDYLRSHLEQCRQAISDGVDLIGYCSWSFTDLLSWLNGYQKRYGFVYVNRDEE
                     STSDLKRLKKKSFYWYQDVIKTNGESL*"
     gene            352227..353660
                     /gene="bglC"
                     /locus_tag="BSU_03410"
                     /old_locus_tag="BSU03410"
     downshifts      353638
                     /Source="Nicolas_upshifts"
                     /id="D151"
                     /incds=0
                     /nref=12
                     /ntot=61
                     /MaxReadThrough="1.51167"
                     /MaxDrop="4.6748"
                     /score="18.0928088"
                     /energy="-15.9"
                     /TU="NA"
                     /idTUdmin="U260"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(353697..354095)
                     /gene="nin"
                     /locus_tag="BSU_03420"
                     /old_locus_tag="BSU03420"
                     /function="16.3: Control"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11359569, 11814663, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11359569, 11814663,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="inhibitor of the DNA degrading activity of NucA
                     (competence)"
                     /protein_id="NP_388224.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03420"
                     /db_xref="EnsemblGenomes-Tr:CAB12136"
                     /db_xref="GOA:P12669"
                     /db_xref="InterPro:IPR020354"
                     /db_xref="PDB:4MQD"
                     /db_xref="SubtiList:BG10839"
                     /db_xref="UniProtKB/Swiss-Prot:P12669"
                     /translation="MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAAD
                     GAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESIMSKRLSFDLP
                     KGDYQLTCWTVPAEMSDLHADTYIIDAVSV*"
     gene            complement(353697..354095)
                     /gene="nin"
                     /locus_tag="BSU_03420"
                     /old_locus_tag="BSU03420"
     promotor_no_box complement(354092..354192)
                     /Source="Nicolas_upshift_promotors"
                     /id="U261"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.234765234765235"
                     /psig="0.247752247752248"
                     /xcortree=1715
                     /SigmaFactorBS="caggctcttgggtcgggcatcggcttaccgattacccagacg
                     gcacaaaggttttattcacaattcagtaaacagtacatagaggaggaacagcacattg
                     a"
                     /listShort="nin, S122"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     CDS             complement(354122..354571)
                     /gene="nucA"
                     /locus_tag="BSU_03430"
                     /old_locus_tag="BSU03430"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:2841296, 7746143, 11359569, 11814663"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2841296, 7746143,
                     11359569, 11814663; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="NP_388225.3"
                     /db_xref="EnsemblGenomes-Gn:BSU03430"
                     /db_xref="EnsemblGenomes-Tr:CAB12137"
                     /db_xref="GOA:P12667"
                     /db_xref="InterPro:IPR029476"
                     /db_xref="SubtiList:BG10838"
                     /db_xref="UniProtKB/Swiss-Prot:P12667"
                     /translation="MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYD
                     ETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGAEERREQSLKDVPSKKGYDRDEW
                     PMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ*"
     gene            complement(354122..354571)
                     /gene="nucA"
                     /locus_tag="BSU_03430"
                     /old_locus_tag="BSU03430"
     upshifts        complement(354132)
                     /Source="Nicolas_upshifts"
                     /id="U261"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.234765234765235"
                     /psig="0.247752247752248"
                     /xcortree=1715
                     /SigmaFactorBS="caggctcttgggtcgggcatcggcttaccgattacccagacg
                     gcacaaaggttttattcacaattcagtaaacagtacatagaggaggaacagcacattg
                     a"
                     /listShort="nin, S122"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(354586..354605)
                     /Source="Nicolas_upshift_promotors"
                     /id="U262"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.994005994005994"
                     /xcortree=2957
                     /SigmaFactorBS="taaactgatcgtaaaacataaaatttaaACCTTTACaccaaa
                     tgctttcTGGATTACTCTTGTGTCAGTtttaaaagcgggaggtgaacatcacgacgga
                     c"
                     /listShort="nucA, nin, S122, yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(354594)
                     /Source="Nicolas_upshifts"
                     /id="U262"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.994005994005994"
                     /xcortree=2957
                     /SigmaFactorBS="taaactgatcgtaaaacataaaatttaaACCTTTACaccaaa
                     tgctttcTGGATTACTCTTGTGTCAGTtttaaaagcgggaggtgaacatcacgacgga
                     c"
                     /listShort="nucA, nin, S122, yckB, yckA"
                     /GFF_Attribute="listLong"
     S_feature       complement(354596..354738)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_372628_372770_c"
                     /HighExp="C30, Diami, M40t45, Cold, Lbstat, T0.30H, M0t90,
                     dia15, C90, Lbtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigD"
                     /TUshortPSig="0.0879, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S124"
     promotor_-35    complement(354619..354626)
                     /Source="Nicolas_upshift_promotors"
                     /id="U262"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.532467532467532"
                     /psig="0.994005994005994"
                     /xcortree=2957
                     /SigmaFactorBS="taaactgatcgtaaaacataaaatttaaACCTTTACaccaaa
                     tgctttcTGGATTACTCTTGTGTCAGTtttaaaagcgggaggtgaacatcacgacgga
                     c"
                     /listShort="nucA, nin, S122, yckB, yckA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(354739..356460)
                     /gene="tlpC"
                     /locus_tag="BSU_03440"
                     /old_locus_tag="BSU03440"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:7704255, 7921238, 15187186, 27899502"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7704255, 7921238,
                     15187186, 27899502; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein (plant
                     colonization)"
                     /protein_id="NP_388226.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03440"
                     /db_xref="EnsemblGenomes-Tr:CAB12138"
                     /db_xref="GOA:P39209"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR004089"
                     /db_xref="InterPro:IPR004090"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="InterPro:IPR033463"
                     /db_xref="SubtiList:BG10790"
                     /db_xref="UniProtKB/Swiss-Prot:P39209"
                     /translation="MLIKRFKMKLGTKILCLVFVVILLFSASVGTVMLKEITESMKQM
                     ATEKAKGDLALSSTYIDDVMSGDWQVKNNKLYKGQTQINGNEDIVDLLGEKTGDTITI
                     FQGDTRVATNVMKNGERAVGTQASSEVIAAVLKKGKRFYGQADVAGSSYQTAYMPLKD
                     QNGNIIGMLYTGANQSILASLTQSLFTQFAIVLVIVIMVSVILVLVFTRKINKRLNAL
                     KSAFESAGNGDMTIEVSDKTGDELSELSVYYNKMRMKLNDTIQTVQQSALQLASASQQ
                     LSAGAEETNQASEKITEAVQQIANGAQDQITRIENSESSLKQASADIRDISANTAAIA
                     DKGQLAQSKADIGQKEIANVQAQMDAIHQSIQKSGEIIHQLDGRSKQIEQILSVITQI
                     ADQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLAEESQQSAGQISKLIIEIQKDMN
                     RSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLSASVTNISASAHQI
                     NDSFAANTADIKESTKNTRQAAALTEEQFAAMEEITAASETLSQLAEELTGIISQFKM
                     INQAENG*"
     gene            complement(354739..356460)
                     /gene="tlpC"
                     /locus_tag="BSU_03440"
                     /old_locus_tag="BSU03440"
     promotor_-35    354751..354758
                     /Source="Nicolas_upshift_promotors"
                     /id="U263"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.955044955044955"
                     /psig="0.996003996003996"
                     /xcortree=2959
                     /SigmaFactorBS="ttgccaatttacaataatgatagtaagtcatcagccgttttc
                     GGCTTGATtaatcattttaaatTGGCTTATGATACCGGTAAGctcctcagctaattga
                     g"
                     /listShort="S125, hxlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       354769..357912
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_372801_375944"
                     /HighExp="T1.0H, T1.30H, T0.30H, T2.0H, T2.30H, T3.0H,
                     T3.30H, T4.0H, T0.0H, T-0.40H"
                     /AntisenseName="tlpC"
                     /AntisenseCor="-0.40398083053643302"
                     /AntisenseRegPval="-11.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S125"
     upshifts        354769
                     /Source="Nicolas_upshifts"
                     /id="U263"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.955044955044955"
                     /psig="0.996003996003996"
                     /xcortree=2959
                     /SigmaFactorBS="ttgccaatttacaataatgatagtaagtcatcagccgttttc
                     GGCTTGATtaatcattttaaatTGGCTTATGATACCGGTAAGctcctcagctaattga
                     g"
                     /listShort="S125, hxlR"
                     /GFF_Attribute="listLong"
     promotor_-10    354773..354792
                     /Source="Nicolas_upshift_promotors"
                     /id="U263"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.955044955044955"
                     /psig="0.996003996003996"
                     /xcortree=2959
                     /SigmaFactorBS="ttgccaatttacaataatgatagtaagtcatcagccgttttc
                     GGCTTGATtaatcattttaaatTGGCTTATGATACCGGTAAGctcctcagctaattga
                     g"
                     /listShort="S125, hxlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_no_box complement(354774..354874)
                     /Source="Nicolas_upshift_promotors"
                     /id="U264"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.452547452547453"
                     /psig="0.0879120879120879"
                     /xcortree=2190
                     /SigmaFactorBS="ggctgcattaacagaggagcaatttgctgcaatggaggagat
                     taccgcagcttctgaaacactttctcaattagctgaggagcttaccggtatcataagc
                     c"
                     /listShort="S124, nucA, nin, S122"
                     /listLong="yckB, yckA"
                     /label="promotor_no_box"
     upshifts        complement(354814)
                     /Source="Nicolas_upshifts"
                     /id="U264"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.452547452547453"
                     /psig="0.0879120879120879"
                     /xcortree=2190
                     /SigmaFactorBS="ggctgcattaacagaggagcaatttgctgcaatggaggagat
                     taccgcagcttctgaaacactttctcaattagctgaggagcttaccggtatcataagc
                     c"
                     /listShort="S124, nucA, nin, S122"
                     /listLong="yckB, yckA"
     promotor_-10    complement(356484..356502)
                     /Source="Nicolas_upshift_promotors"
                     /id="U265"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2796
                     /SigmaFactorBS="cggcctgaagatcaggccggttttattttttctaaaATAAAA
                     CTttaaacccaaaaaCCCGATAAGTAATATGACCtgcaaatcgtaaagggaggaatta
                     t"
                     /listShort="tlpC, S124, nucA, nin"
                     /listLong="S122"
                     /label="promotor_-10"
     upshifts        complement(356499)
                     /Source="Nicolas_upshifts"
                     /id="U265"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2796
                     /SigmaFactorBS="cggcctgaagatcaggccggttttattttttctaaaATAAAA
                     CTttaaacccaaaaaCCCGATAAGTAATATGACCtgcaaatcgtaaagggaggaatta
                     t"
                     /listShort="tlpC, S124, nucA, nin"
                     /listLong="S122"
     promotor_-35    complement(356516..356523)
                     /Source="Nicolas_upshift_promotors"
                     /id="U265"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2796
                     /SigmaFactorBS="cggcctgaagatcaggccggttttattttttctaaaATAAAA
                     CTttaaacccaaaaaCCCGATAAGTAATATGACCtgcaaatcgtaaagggaggaatta
                     t"
                     /listShort="tlpC, S124, nucA, nin"
                     /listLong="S122"
                     /label="promotor_-35"
     CDS             complement(356571..357128)
                     /gene="hxlB"
                     /locus_tag="BSU_03450"
                     /old_locus_tag="BSU03450"
                     /EC_number="5.3.1.27"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10572115, 15978081"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10572115, 15978081;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-3-hexuloisomerase (PHI)"
                     /protein_id="NP_388227.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03450"
                     /db_xref="EnsemblGenomes-Tr:CAB12139"
                     /db_xref="GOA:P42404"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR017552"
                     /db_xref="PDB:1M3S"
                     /db_xref="PDB:1VIV"
                     /db_xref="SubtiList:BG11182"
                     /db_xref="UniProtKB/Swiss-Prot:P42404"
                     /translation="MKTTEYVAEILNELHNSAAYISNEEADQLADHILSSHQIFTAGA
                     GRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAK
                     SLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYD
                     AVILKLMEKKGLDSETMFTHHANLE*"
     gene            complement(356571..357128)
                     /gene="hxlB"
                     /locus_tag="BSU_03450"
                     /old_locus_tag="BSU03450"
     downshifts      complement(356574)
                     /Source="Nicolas_upshifts"
                     /id="D152"
                     /incds=0
                     /nref=51
                     /ntot=130
                     /MaxReadThrough="1.98332"
                     /MaxDrop="6.56052"
                     /score="42.3682356"
                     /energy="-15.4"
                     /TU="NA"
                     /idTUdmin="U266"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(357134..357766)
                     /gene="hxlA"
                     /locus_tag="BSU_03460"
                     /old_locus_tag="BSU03460"
                     /EC_number="4.1.2.43"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10572115, 15978081"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10572115, 15978081;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hexulose-6-phosphate synthase (HPS)"
                     /protein_id="NP_388228.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03460"
                     /db_xref="EnsemblGenomes-Tr:CAB12140"
                     /db_xref="GOA:P42405"
                     /db_xref="InterPro:IPR001754"
                     /db_xref="InterPro:IPR011060"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR017553"
                     /db_xref="SubtiList:BG11183"
                     /db_xref="UniProtKB/Swiss-Prot:P42405"
                     /translation="MELQLALDLVNIPEAIELVKEVEQYIDVVEIGTPVVINEGLRAV
                     KEIKEAFPQLKVLADLKIMDAGGYEIMKASEAGADIITVLGATDDATIKGAVEEAKKQ
                     KKKILVDMINVKDIESRAKEIDALGVDYICVHTGYDLQAEGKNSFEELTTIKNTVKNA
                     KTAIAGGIKLDTLPEVIQQKPDLVIVGGGITSAADKAETASKMKQLIVQG*"
     gene            complement(357134..357766)
                     /gene="hxlA"
                     /locus_tag="BSU_03460"
                     /old_locus_tag="BSU03460"
     promotor_-10    complement(357792..357811)
                     /Source="Nicolas_upshift_promotors"
                     /id="U266"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.987012987012987"
                     /xcortree=1517
                     /SigmaFactorBS="agtatcctccaagtaacttgttgacttcaaagtgcctaCTTC
                     tcaacaaaagaaggAACCTATAGAATGAACAATAattcgaaaaagggagtggatcaac
                     a"
                     /listShort="hxlA, hxlB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(357807)
                     /Source="Nicolas_upshifts"
                     /id="U266"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.987012987012987"
                     /xcortree=1517
                     /SigmaFactorBS="agtatcctccaagtaacttgttgacttcaaagtgcctaCTTC
                     tcaacaaaagaaggAACCTATAGAATGAACAATAattcgaaaaagggagtggatcaac
                     a"
                     /listShort="hxlA, hxlB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(357826..357829)
                     /Source="Nicolas_upshift_promotors"
                     /id="U266"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.987012987012987"
                     /xcortree=1517
                     /SigmaFactorBS="agtatcctccaagtaacttgttgacttcaaagtgcctaCTTC
                     tcaacaaaagaaggAACCTATAGAATGAACAATAattcgaaaaagggagtggatcaac
                     a"
                     /listShort="hxlA, hxlB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    357890..357893
                     /Source="Nicolas_upshift_promotors"
                     /id="U267"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.536463536463537"
                     /psig=1
                     /xcortree=1957
                     /SigmaFactorBS="acttggaggatactgtgaggagagacaatcagatttCTTTcg
                     cttgattttatgAGTGAGTATAATGAAAAAAGagtctgcaaaaaagtaagtaagtgat
                     g"
                     /listShort="hxlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    357908..357927
                     /Source="Nicolas_upshift_promotors"
                     /id="U267"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.536463536463537"
                     /psig=1
                     /xcortree=1957
                     /SigmaFactorBS="acttggaggatactgtgaggagagacaatcagatttCTTTcg
                     cttgattttatgAGTGAGTATAATGAAAAAAGagtctgcaaaaaagtaagtaagtgat
                     g"
                     /listShort="hxlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        357914
                     /Source="Nicolas_upshifts"
                     /id="U267"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.536463536463537"
                     /psig=1
                     /xcortree=1957
                     /SigmaFactorBS="acttggaggatactgtgaggagagacaatcagatttCTTTcg
                     cttgattttatgAGTGAGTATAATGAAAAAAGagtctgcaaaaaagtaagtaagtgat
                     g"
                     /listShort="hxlR"
                     /GFF_Attribute="listLong"
     CDS             358000..358362
                     /gene="hxlR"
                     /locus_tag="BSU_03470"
                     /old_locus_tag="BSU03470"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15978081, 26973631"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15978081, 26973631;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="positive regulator of hxlAB expression
                     (formaldehyde sensing)"
                     /protein_id="NP_388229.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03470"
                     /db_xref="EnsemblGenomes-Tr:CAB12141"
                     /db_xref="GOA:P42406"
                     /db_xref="InterPro:IPR002577"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG11184"
                     /db_xref="UniProtKB/Swiss-Prot:P42406"
                     /translation="MSRMDDKRFNCEKELTLAVIGGKWKMLILWHLGKEGTKRFNELK
                     TLIPDITQKILVNQLRELEQDMIVHREVYPVVPPKVEYSLTPHGESLMPILEAMYEWG
                     KGYMELIDIDKNVMKESL*"
     gene            358000..358362
                     /gene="hxlR"
                     /locus_tag="BSU_03470"
                     /old_locus_tag="BSU03470"
     downshifts      358346
                     /Source="Nicolas_upshifts"
                     /id="D153"
                     /incds=0
                     /nref=14
                     /ntot=154
                     /MaxReadThrough="3.13609"
                     /MaxDrop="3.66949"
                     /score="20.4643411"
                     /energy="-9.6"
                     /TU="U267"
                     /idTUdmin="U263"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     promotor_-35    358609..358612
                     /Source="Nicolas_upshift_promotors"
                     /id="U268"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.994005994005994"
                     /xcortree=3241
                     /SigmaFactorBS="cggcatcccgcatgaaacttttcacccatttttcGGTGataa
                     aaacatttttTTCATTTAAACTGAACGGTAgaaagataaaaaatattgaaaacaatga
                     a"
                     /listShort="S126, srfAA, srfAB, comS, srfAC, srfAD, ycxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    358627..358646
                     /Source="Nicolas_upshift_promotors"
                     /id="U268"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.994005994005994"
                     /xcortree=3241
                     /SigmaFactorBS="cggcatcccgcatgaaacttttcacccatttttcGGTGataa
                     aaacatttttTTCATTTAAACTGAACGGTAgaaagataaaaaatattgaaaacaatga
                     a"
                     /listShort="S126, srfAA, srfAB, comS, srfAC, srfAD, ycxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       358635..358935
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_376667_376967"
                     /HighExp="HiOs, T-1.10H, T5.0H, T4.0H, T-1.40H, S2,
                     M9-stat, T3.30H, T0.0H, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.20585600000000001"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S126"
     upshifts        358635
                     /Source="Nicolas_upshifts"
                     /id="U268"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.658341658341658"
                     /psig="0.994005994005994"
                     /xcortree=3241
                     /SigmaFactorBS="cggcatcccgcatgaaacttttcacccatttttcGGTGataa
                     aaacatttttTTCATTTAAACTGAACGGTAgaaagataaaaaatattgaaaacaatga
                     a"
                     /listShort="S126, srfAA, srfAB, comS, srfAC, srfAD, ycxA"
                     /GFF_Attribute="listLong"
     CDS             358936..369699
                     /gene="srfAA"
                     /locus_tag="BSU_03480"
                     /old_locus_tag="BSU03480"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15066026, 16166527, 8288534, 8441623, 14762003,
                     16707694, 26284661, 26268540, 14762003"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15066026, 16166527,
                     8288534, 8441623, 14762003, 16707694, 26284661, 26268540,
                     14762003; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin synthetase"
                     /protein_id="NP_388230.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03480"
                     /db_xref="EnsemblGenomes-Tr:CAB12142"
                     /db_xref="GOA:P27206"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR001242"
                     /db_xref="InterPro:IPR006162"
                     /db_xref="InterPro:IPR009081"
                     /db_xref="InterPro:IPR010060"
                     /db_xref="InterPro:IPR010071"
                     /db_xref="InterPro:IPR013321"
                     /db_xref="InterPro:IPR020806"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="InterPro:IPR036736"
                     /db_xref="SubtiList:BG10168"
                     /db_xref="UniProtKB/Swiss-Prot:P27206"
                     /translation="MEITFYPLTDAQKRIWYTEKFYPHTSISNLAGIGKLVSADAIDY
                     VLVEQAIQEFIRRNDAMRLRLRLDENGEPVQYISEYRPVDIKHTDTTEDPNAIEFISQ
                     WSREETKKPLPLYDCDLFRFSLFTIKENEVWFYANVHHVISDGISMNILGNAIMHIYL
                     ELASGSETKEGISHSFIDHVLSEQEYAQSKRFEKDKAFWNKQFESVPELVSLKRNASA
                     GGSLDAERFSKDVPEALHQQILSFCEANKVSVLSVFQSLLAAYLYRVSGQNDVVTGTF
                     MGNRTNAKEKQMLGMFVSTVPLRTNIDGGQAFSEFVKDRMKDLMKTLRHQKYPYNLLI
                     NDLRETKSSLTKLFTVSLEYQVMQWQKEEDLAFLTEPIFSGSGLNDVSIHVKDRWDTG
                     KLTIDFDYRTDLFSREEINMICERMITMLENALTHPEHTIDELTLISDAEKEKLLARA
                     GGKSVSYRKDMTIPELFQEKAELLSDHPAVVFEDRTLSYRTLHEQSARIANVLKQKGV
                     GPDSPVAVLIERSERMITAIMGILKAGGAYVPIDPGFPAERIQYILEDCGADFILTES
                     KVAAPEADAELIDLDQAIEEGAEESLNADVNARNLAYIIYTSGTTGRPKGVMIEHRQV
                     HHLVESLQQTIYQSGSQTLRMALLAPFHFDASVKQIFASLLLGQTLYIVPKKTVTNGA
                     ALTAYYRKNSIEATDGTPAHLQMLAAAGDFEGLKLKHMLIGGEGLSSVVADKLLKLFK
                     EAGTAPRLTNVYGPTETCVDASVHPVIPENAVQSAYVPIGKALGNNRLYILDQKGRLQ
                     PEGVAGELYIAGDGVGRGYLHLPELTEEKFLQDPFVPGDRMYRTGDVVRWLPDGTIEY
                     LGREDDQVKVRGYRIELGEIEAVIQQAPDVAKAVVLARPDEQGNLEVCAYVVQKPGSE
                     FAPAGLREHAARQLPDYMVPAYFTEVTEIPLTPSGKVDRRKLFALEVKAVSGTAYTAP
                     RNETEKAIAAIWQDVLNVEKAGIFDNFFETGGHSLKAMTLLTKIHKETGIEIPLQFLF
                     EHPTITALAEEADHRESKAFAVIEPAEKQEHYPLSLAQQRTYIVSQFEDAGVGYNMPA
                     AAILEGPLDIQKLERAFQGLIRRHESLRTSFVLENSTPRQKIHDSVDFNIEMIERGGR
                     SDEAIMASFVRTFDLAKAPLFRIGLLGLEENRHMLLFDMHHLISDGVSIGIMLEELAR
                     IYKGEQLPDLRLQYKDYAVWQSRQAAEGYKKDQAYWKEVFAGELPVLQLLSDYPRPPV
                     QSFEGDRVSIKLDAGVKDRLNRLAEQNGATLYMVMLSAYYTLLSKYTGQDDIIVGTPS
                     AGRNHSDTEGIIGMFVNTLAIRSEVKQNETFTQLISRVRKRVLDAFSHQDYPFEWLVE
                     DLNIPRDVSRHPLFDTMFSLQNATEGIPAVGDLSLSVQETNFKIAKFDLTVQARETDE
                     GIEIDVDYSTKLFKQSTADRLLTHFARLLEDAAADPEKPISEYKLLSEEEAASQIQQF
                     NPGRTPYPKDKTIVQLFEEQAANTPDHTALQYEGESLTYRELNERANRLARGILSLGA
                     GEGRTAAVLCERSMDMIVSILAVLKSGSAYVPIDPEHPIQRMQHFFRDSGAKVLLTQR
                     KLKALAEEAEFKGVIVLADEEESYHADARNLALPLDSAAMANLTYTSGTTGTPKGNIV
                     THANILRTVKETNYLSITEQDTILGLSNYVFDAFMFDMFGSLLNGAKLVLIPKETVLD
                     MARLSRVIERENISILMITTALFHLLVDLNPACLSTLRKIMFGGERASVEHVRKALQT
                     VGKGKLLHMYGPSESTVFATYHPVDELEEHTLSVPIGKPVSNTEVYILDRTGHVQPAG
                     IAGELCVSGEGLVKGYYNRPELTEEKFVPHPFTSGERMYKTGDLARWLPNGDIEFIGR
                     IDHQVKIRGQRIELGEIEHQLQTHDRVQESVVLAVDQGAGDKLLCAYYVGEGDISSQE
                     MREHAAKDLPAYMVPAVFIQMDELPLTGNGKIDRRALPIPDANVSRGVSYVAPRNGTE
                     QKVADIWAQVLQAEQVGAYDHFFDIGGHSLAGMKMLALVHQELGVELSLKDLFQSPTV
                     EGLAQVIASAEKGTAASISPAEKQDTYPVSSPQKRMYVLQQLEDAQTSYNMPAVLRLT
                     GELDVERLNSVMQQLMQRHEALRTTFEIKDGETVQRIWEEAECEIAYFEAPEEETERI
                     VSEFIKPFKIDQLPLFRIGLIKHSDTEHVLLFDMHHIISDGASVGVLIEELSKLYDGE
                     TLEPLRIQYKDYAVWQQQFIQSELYKKQEEHWLKELDGELPVLTLPTDYSRPAVQTFE
                     GDRIAFSLEAGKADALRRLAKETDSTLYMVLLASYSAFLSKISGQDDIIVGSPVAGRS
                     QADVSRVIGMFVNTLALRTYPKGEKTFADYLNEVKETALSAFDAQDYPLEDLIGNVQV
                     QRDTSRNPLFDAVFSMQNANIKDLTMKGIQLEPHPFERKTAKFDLTLTADETDGGLTF
                     VLEYNTALFKQETIERWKQYWMELLDAVTGNPNQPLSSLSLVTETEKQALLEAWKGKA
                     LPVPTDKTVHQLFEETAQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDD
                     RVGVLTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISV
                     PDSYTGDVILLDGSRTILSLPLDENDEENPETAVTAENLAYMIYTSGTTGQPKGVMVE
                     HHALVNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIEEAIRLD
                     IVRLNDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNY
                     GPTENTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLA
                     RGYLNREDETAKRFVADPFVPGERMYRTGDLVKWTGGGIEYIGRIDQQVKVRGYRIEL
                     SEIEVQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPESADIEALKSALKETLPDYMIP
                     AFWVTLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEV
                     GVTDNFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQ
                     GPVEGEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDAL
                     RMVYREGQEDVIQYNRGLEAASAQLEVIQIEGQAADYEDRIEREAERLQSSIDLQEGG
                     LLKAGLFQAEDGDHLLLAIHHLVVDGVSWRILLEDFAAVYTQLEQGNEPVLPQKTHSF
                     AEYAERLQDFANSKAFLKEKEYWRQLEEQAVAAKLPKDRESGDQRMKHTKTIEFSLTA
                     EETEQLTTKVHEAYHTEMNDILLTAFGLAMKEWTGQDRVSVHLEGHGREEIIEDLTIS
                     RTVGWFTSMYPMVLDMKHADDLGYQLKQMKEDIRHVPNKGVGYGILRYLTAPEHKEDV
                     AFSIQPDVSFNYLGQFDEMSDAGLFTRSELPSGQSLSPETEKPNALDVVGYIENGKLT
                     MSLAYHSLEFHEKTVQTFSDSFKAHLLRIIEHCLSQDGTELTPSDLGDDDLTLDELDK
                     LMEIF*"
     gene            358936..369699
                     /gene="srfAA"
                     /locus_tag="BSU_03480"
                     /old_locus_tag="BSU03480"
     CDS             369712..380463
                     /gene="srfAB"
                     /locus_tag="BSU_03490"
                     /old_locus_tag="BSU03490"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15066026, 16166527, 16553878, 17227471, 14762003,
                     26284661"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15066026, 16166527,
                     16553878, 17227471, 14762003, 26284661; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin synthetase"
                     /protein_id="NP_388231.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03490"
                     /db_xref="EnsemblGenomes-Tr:CAB12143"
                     /db_xref="GOA:Q04747"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR001242"
                     /db_xref="InterPro:IPR006162"
                     /db_xref="InterPro:IPR009081"
                     /db_xref="InterPro:IPR010060"
                     /db_xref="InterPro:IPR010071"
                     /db_xref="InterPro:IPR020806"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="InterPro:IPR036736"
                     /db_xref="SubtiList:BG10169"
                     /db_xref="UniProtKB/Swiss-Prot:Q04747"
                     /translation="MSKKSIQKVYALTPMQEGMLYHAMLDPHSSSYFTQLELGIHGAF
                     DLEIFEKSVNELIRSYDILRTVFVHQQLQKPRQVVLAERKTKVHYEDISHADENRQKE
                     HIERYKQDVQRQGFNLAKDILFKVAVFRLAADQLYLVWSNHHIMMDGWSMGVLMKSLF
                     QNYEALRAGRTPANGQGKPYSDYIKWLGKQDNEEAESYWSERLAGFEQPSVLPGRLPV
                     KKDEYVNKEYSFTWDETLVARIQQTANLHQVTGPNLFQAVWGIVLSKYNFTDDVIFGT
                     VVSGRPSEINGIETMAGLFINTIPVRVKVERDAAFADIFTAVQQHAVEAERYDYVPLY
                     EIQKRSALDGNLLNHLVAFENYPLDQELENGSMEDRLGFSIKVESAFEQTSFDFNLIV
                     YPGKTWTVKIKYNGAAFDSAFIERTAEHLTRMMEAAVDQPAAFVREYGLVGDEEQRQI
                     VEVFNSTKAELPEGMAVHQVFEEQAKRTPASTAVVYEGTKLTYRELNAAANRLARKLV
                     EHGLQKGETAAIMNDRSVETVVGMLAVLKAGAAYVPLDPALPGDRLRFMAEDSSVRMV
                     LIGNSYTGQAHQLQVPVLTLDIGFEESEAADNLNLPSAPSDLAYIMYTSGSTGKPKGV
                     MIEHKSILRLVKNAGYVPVTEEDRMAQTGAVSFDAGTFEVFGALLNGAALYPVKKETL
                     LDAKQFAAFLREQSITTMWLTSPLFNQLAAKDAGMFGTLRHLIIGGDALVPHIVSKVK
                     QASPSLSLWNGYGPTENTTFSTSFLIDREYGGSIPIGKPIGNSTAYIMDEQQCLQPIG
                     APGELCVGGIGVARGYVNLPELTEKQFLEDPFRPGERIYRTGDLARWLPDGNIEFLGR
                     IDNQVKVRGFRIELGEIETKLNMAEHVTEAAVIIRKNKADENEICAYFTADREVAVSE
                     LRKTLSQSLPDYMVPAHLIQMDSLPLTPNGKINKKELPAPQSEAVQPEYAAPKTESEK
                     KLAEIWEGILGVKAGVTDNFFMIGGHSLKAMMMTAKIQEHFHKEVPIKVLFEKPTIQE
                     LALYLEENESKEEQTFEPIRQASYQQHYPVSPAQRRMYILNQLGQANTSYNVPAVLLL
                     EGEVDKDRLENAIQQLINRHEILRTSFDMIDGEVVQTVHKNISFQLEAAKGREEDAEE
                     IIKAFVQPFELNRAPLVRSKLVQLEEKRHLLLIDMHHIITDGSSTGILIGDLAKIYQG
                     ADLELPQIHYKDYAVWHKEQTNYQKDEEYWLDVFKGELPILDLPADFERPAERSFAGE
                     RVMFGLDKQITAQIKSLMAETDTTMYMFLLAAFNVLLSKYASQDDIIVGSPTAGRTHP
                     DLQGVPGMFVNTVALRTAPAGDKTFAQFLEEVKTASLQAFEHQSYPLEELIEKLPLTR
                     DTSRSPLFSVMFNMQNMEIPSLRLGDLKISSYSMLHHVAKFDLSLEAVEREEDIGLSF
                     DYATALFKDETIRRWSRHFVNIIKAAAANPNVRLSDVDLLSSAETAALLEERHMTQIT
                     EATFAALFEKQAQQTPDHSAVKAGGNLLTYRELDEQANQLAHHLRAQGAGNEDIVAIV
                     MDRSAEVMVSILGVMKAGAAFLPIDPDTPEERIRYSLEDSGAKFAVVNERNMTAIGQY
                     EGIIVSLDDGKWRNESKERPSSISGSRNLAYVIYTSGTTGKPKGVQIEHRNLTNYVSW
                     FSEEAGLTENDKTVLLSSYAFDLGYTSMFPVLLGGGELHIVQKETYTAPDEIAHYIKE
                     HGITYIKLTPSLFHTIVNTASFAKDANFESLRLIVLGGEKIIPTDVIAFRKMYGHTEF
                     INHYGPTEATIGAIAGRVDLYEPDAFAKRPTIGRPIANAGALVLNEALKLVPPGASGQ
                     LYITGQGLARGYLNRPQLTAERFVENPYSPGSLMYKTGDVVRRLSDGTLAFIGRADDQ
                     VKIRGYRIEPKEIETVMLSLSGIQEAVVLAVSEGGLQELCAYYTSDQDIEKAELRYQL
                     SLTLPSHMIPAFFVQVDAIPLTANGKTDRNALPKPNAAQSGGKALAAPETALEESLCR
                     IWQKTLGIEAIGIDDNFFDLGGHSLKGMMLIANIQAELEKSVPLKALFEQPTVRQLAA
                     YMEASAVSGGHQVLKPADKQDMYPLSSAQKRMYVLNQLDRQTISYNMPSVLLMEGELD
                     ISRLRDSLNQLVNRHESLRTSFMEANGEPVQRIIEKAEVDLHVFEAKEDEADQKIKEF
                     IRPFDLNDAPLIRAALLRIEAKKHLLLLDMHHIIADGVSRGIFVKELALLYKGEQLPE
                     PTLHYKDFAVWQNEAEQKERMKEHEAYWMSVLSGELPELDLPLDYARPPVQSFKGDTI
                     RFRTGSETAKAVEKLLAETGTTLHMVLHAVFHVFLSKISGQRDIVIGSVTAGRTNADV
                     QDMPGMFVNTLALRMEAKEQQTFAELLELAKQTNLSALEHQEYPFEDLVNQLDLPRDM
                     SRNPLFNVMVTTENPDKEQLTLQNLSISPYEAHQGTSKFDLTLGGFTDENGIGLQLEY
                     ATDLFAKETAEKWSEYVLRLLKAVADNPNQPLSSLLLVTETEKQALLEAWKGKALPVP
                     TDKTVHQLFEETVQRHKDRPAVTYNGQSWTYGELNAKANRLARILMDCGISPDDRVGV
                     LTKPSLEMSAAVLGVLKAGAAFVPIDPDYPDQRIEYILQDSGAKLLLKQEGISVPDSY
                     TGDVILLDGSRTILSLPLDENDEGNPETAVTAENLAYMIYTSGTTGQPKGVMVEHHAL
                     VNLCFWHHDAFSMTAEDRSAKYAGFGFDASIWEMFPTWTIGAELHVIDEAIRLDIVRL
                     NDYFETNGVTITFLPTQLAEQFMELENTSLRVLLTGGDKLKRAVKKPYTLVNNYGPTE
                     NTVVATSAEIHPEEGSLSIGRAIANTRVYILGEGNQVQPEGVAGELCVAGRGLARGYL
                     NREDETAKRFVADPFVPGERMYRTGDLVKWVNGGIEYIGRIDQQVKVRGYRIELSEIE
                     VQLAQLSEVQDAAVTAVKDKGGNTAIAAYVTPETADIEALKSTLKETLPDYMIPAFWV
                     TLNELPVTANGKVDRKALPEPDIEAGSGEYKAPTTDMEELLAGIWQDVLGMSEVGVTD
                     NFFSLGGDSIKGIQMASRLNQHGWKLEMKDLFQHPTIEELTQYVERAEGKQADQGPVE
                     GEVILTPIQRWFFEKNFTNKHHWNQSVMLHAKKGFDPERVEKTLQALIEHHDALRMVY
                     REENGDIVQVYKPIGESKVSFEIVDLYGSDEEMLRSQIKLLANKLQSSLDLRNGPLLK
                     AEQYRTEAGDHLLIAVHHLVVDGVSWRILLEDFASGYMQAEKEESLVFPQKTNSFKDW
                     AEELAAFSQSAHLLQQAEYWSQIAAEQVSPLPKDCETEQRIVKDTSSVLCELTAEDTK
                     HLLTDVHQPYGTEINDILLSALGLTMKEWTKGAKIGINLEGHGREDIIPNVNISRTVG
                     WFTAQYPVVLDISDADASAVIKTVKENLRRIPDKGVGYGILRYFTETAETKGFTPEIS
                     FNYLGQFDSEVKTDFFEPSAFDMGRQVSGESEALYALSFSGMIRNGRFVLSCSYNEKE
                     FERATVEEQMERFKENLLMLIRHCTEKEDKEFTPSDFSAEDLEMDEMGDIFDMLEENL
                     K*"
     gene            369712..380463
                     /gene="srfAB"
                     /locus_tag="BSU_03490"
                     /old_locus_tag="BSU03490"
     CDS             372848..372988
                     /gene="comS"
                     /locus_tag="BSU_03500"
                     /old_locus_tag="BSU03500"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10361283, 16554821, 8752331, 9696775, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10361283, 16554821,
                     8752331, 9696775, 22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of genetic competence"
                     /protein_id="NP_388232.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03500"
                     /db_xref="EnsemblGenomes-Tr:CAB12144"
                     /db_xref="GOA:P80355"
                     /db_xref="InterPro:IPR035139"
                     /db_xref="SubtiList:BG11045"
                     /db_xref="UniProtKB/Swiss-Prot:P80355"
                     /translation="MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWR
                     EK*"
     gene            372848..372988
                     /gene="comS"
                     /locus_tag="BSU_03500"
                     /old_locus_tag="BSU03500"
     CDS             380500..384327
                     /gene="srfAC"
                     /locus_tag="BSU_03510"
                     /old_locus_tag="BSU03510"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:15066026, 16166527, 16553878, 17227471, 14762003,
                     22720735, 26284661"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15066026, 16166527,
                     16553878, 17227471, 14762003, 22720735, 26284661; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin synthetase"
                     /protein_id="NP_388233.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03510"
                     /db_xref="EnsemblGenomes-Tr:CAB12145"
                     /db_xref="GOA:Q08787"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR001031"
                     /db_xref="InterPro:IPR001242"
                     /db_xref="InterPro:IPR006162"
                     /db_xref="InterPro:IPR009081"
                     /db_xref="InterPro:IPR010071"
                     /db_xref="InterPro:IPR020806"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="InterPro:IPR036736"
                     /db_xref="PDB:1JMK"
                     /db_xref="PDB:2VSQ"
                     /db_xref="SubtiList:BG10170"
                     /db_xref="UniProtKB/Swiss-Prot:Q08787"
                     /translation="MSQFSKDQVQDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVK
                     GSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEIDLTHLTGSE
                     QTAKINEYKEQDKIRGFDLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQ
                     DLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQDKQASLRYWREYLEGFEGQTTFAEQ
                     RKKQKDGYEPKELLFSLSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQSGDLA
                     FGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYV
                     PLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMA
                     SPGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFL
                     LTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQK
                     HGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLL
                     THQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKG
                     NITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHT
                     LLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKA
                     LRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQ
                     PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEY
                     AGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS
                     AEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNE
                     MEETIAQIWSEVLGRKQIGIHDDFFALGGHSLKAMTAASRIKKELGIDLPVKLLFEAP
                     TIAGISAYLKNGGSDGLQDVTIMNQDQEQIIFAFPPVLGYGLMYQNLSSRLPSYKLCA
                     FDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFEAAKKLEEQGRIVQRIIMV
                     DSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKTHAFYSYYVNLIS
                     TGQVKADIDLLTSGADFDMPEWLASWEEATTGVYRVKRGFGTHAEMLQGETLDRNAEI
                     LLEFLNTQTVTVS*"
     gene            380500..384327
                     /gene="srfAC"
                     /locus_tag="BSU_03510"
                     /old_locus_tag="BSU03510"
     CDS             384356..385084
                     /gene="srfAD"
                     /locus_tag="BSU_03520"
                     /old_locus_tag="BSU03520"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:16166527, 16553878, 17227471, 14762003, 22720735,
                     26284661"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16166527, 16553878,
                     17227471, 14762003, 22720735, 26284661; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin synthetase"
                     /protein_id="NP_388234.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03520"
                     /db_xref="EnsemblGenomes-Tr:CAB12146"
                     /db_xref="GOA:Q08788"
                     /db_xref="InterPro:IPR001031"
                     /db_xref="InterPro:IPR012223"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:2K2Q"
                     /db_xref="PDB:2RON"
                     /db_xref="SubtiList:BG10171"
                     /db_xref="UniProtKB/Swiss-Prot:Q08788"
                     /translation="MSQLFKSFDASEKTQLICFPFAGGYSASFRPLHAFLQGECEMLA
                     AEPPGHGTNQTSAIEDLEELTDLYKQELNLRPDRPFVLFGHSMGGMITFRLAQKLERE
                     GIFPQAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKEVMSFFLPSF
                     RSDYRALEQFELYDLAQIQSPVHVFNGLDDKKCIRDAEGWKKWAKDITFHQFDGGHMF
                     LLSQTEEVAERIFAILNQHPIIQP*"
     gene            384356..385084
                     /gene="srfAD"
                     /locus_tag="BSU_03520"
                     /old_locus_tag="BSU03520"
     downshifts      385066
                     /Source="Nicolas_upshifts"
                     /id="D154"
                     /incds=0
                     /nref=196
                     /ntot=261
                     /MaxReadThrough="4.65721"
                     /MaxDrop="6.48992"
                     /score="24.9581454"
                     /energy="-11.1"
                     /TU="U268"
                     /idTUdmin="U268"
                     /TUdmin="-1339"
                     /isTUend="FALSE"
     promotor_-35    385122..385129
                     /Source="Nicolas_upshift_promotors"
                     /id="U269"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig=1
                     /xcortree=2955
                     /SigmaFactorBS="cattcaaccgtgatcaaaagcggacagcttcggctgttccgc
                     tttttttgTGTTGAATgccaatttctgCATGGTATAATAGTCGAAATactcaaataaa
                     g"
                     /listShort="ycxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        385132
                     /Source="Nicolas_upshifts"
                     /id="U269"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig=1
                     /xcortree=2955
                     /SigmaFactorBS="cattcaaccgtgatcaaaagcggacagcttcggctgttccgc
                     tttttttgTGTTGAATgccaatttctgCATGGTATAATAGTCGAAATactcaaataaa
                     g"
                     /listShort="ycxA"
                     /GFF_Attribute="listLong"
     promotor_-10    385141..385160
                     /Source="Nicolas_upshift_promotors"
                     /id="U269"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig=1
                     /xcortree=2955
                     /SigmaFactorBS="cattcaaccgtgatcaaaagcggacagcttcggctgttccgc
                     tttttttgTGTTGAATgccaatttctgCATGGTATAATAGTCGAAATactcaaataaa
                     g"
                     /listShort="ycxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             385185..386411
                     /gene="srfT"
                     /locus_tag="BSU_03530"
                     /old_locus_tag="BSU03530"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 15849754, 16850406,
                     25366377; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin exporter"
                     /protein_id="NP_388235.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03530"
                     /db_xref="EnsemblGenomes-Tr:CAB12147"
                     /db_xref="GOA:Q08791"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG10172"
                     /db_xref="UniProtKB/Swiss-Prot:Q08791"
                     /translation="MRTSPRMKWFVLLFTFVFAIGMNSFRNSFQFFMLPMADAFHADR
                     SLISVSVSIFMITTGIVQFFVGFFIDRFSVRKIMALGAVCISASFLVLPYSPNVHVFS
                     AIYGVLGGIGYSCAVGVTTQYFISCWFDTHKGLALAILTNANSAGLLLLSPIWAAAPY
                     HAGWQSTYTILGIVMAAVLLPLLVFGMKHPPHAQAETVKKSYDWRGFWNVMKQSRLIH
                     ILYFGVFTCGFTMGIIDAHLVPILKDAHVSHVNGMMAAFGAFIIIGGLLAGWLSDLLG
                     SRSVMLSILFFIRLLSLICLLIPILGIHHSDLWYFGFILLFGLSYTGVIPLTAASISE
                     SYQTGLIGSLLGINFFIHQVAGALSVYAGGLFFDMTHGYLLIVAVCIVFVGLSAVIEL
                     VPFLDKQKAKETHHSI*"
     gene            385185..386411
                     /gene="srfT"
                     /locus_tag="BSU_03530"
                     /old_locus_tag="BSU03530"
     downshifts      386405
                     /Source="Nicolas_upshifts"
                     /id="D155"
                     /incds=0
                     /nref=15
                     /ntot=198
                     /MaxReadThrough="2.67601"
                     /MaxDrop="4.06773"
                     /score="7.33278866"
                     /energy="-13.2"
                     /TU="NA"
                     /idTUdmin="U268"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(386426..386983)
                     /gene="ycxB"
                     /locus_tag="BSU_03540"
                     /old_locus_tag="BSU03540"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 21965396"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388236.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03540"
                     /db_xref="EnsemblGenomes-Tr:CAB12148"
                     /db_xref="GOA:Q08793"
                     /db_xref="InterPro:IPR025588"
                     /db_xref="SubtiList:BG10173"
                     /db_xref="UniProtKB/Swiss-Prot:Q08793"
                     /translation="MIQYASESINLPGEITFKDVREIFFYQIAKISCFYFLLFCAIFA
                     AVNFINGWPRIVYGSDALNLFMNSMLIIVMSVLFTLLLLLLLYVKFSRAYKKNERMKS
                     KRTYTLNQEGIRICSKKYDLIFNWDEITAVFEYKNIFRVNTSSGQYIAIPKHFFHSEE
                     EMNRFKEIILKNTETKKLKFKKDQH*"
     gene            complement(386426..386983)
                     /gene="ycxB"
                     /locus_tag="BSU_03540"
                     /old_locus_tag="BSU03540"
     promotor_no_box complement(386441..386541)
                     /Source="Nicolas_upshift_promotors"
                     /id="U270"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.725274725274725"
                     /psig="0.024975024975025"
                     /xcortree=283
                     /SigmaFactorBS="atattgcgatccccaaacatttttttcactccgaagaggaga
                     tgaacagattcaaggagattatccttaaaaataccgaaacaaaaaaactcaaatttaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     downshifts      complement(386463)
                     /Source="Nicolas_upshifts"
                     /id="D156"
                     /incds=0
                     /nref=46
                     /ntot=241
                     /MaxReadThrough="0.9216"
                     /MaxDrop="4.25654"
                     /score="8.42655219"
                     /energy="-14.3"
                     /TU="U270"
                     /idTUdmin="U271"
                     /TUdmin=18
                     /isTUend="TRUE"
     upshifts        complement(386481)
                     /Source="Nicolas_upshifts"
                     /id="U270"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.725274725274725"
                     /psig="0.024975024975025"
                     /xcortree=283
                     /SigmaFactorBS="atattgcgatccccaaacatttttttcactccgaagaggaga
                     tgaacagattcaaggagattatccttaaaaataccgaaacaaaaaaactcaaatttaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    complement(387012..387031)
                     /Source="Nicolas_upshift_promotors"
                     /id="U271"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=3105
                     /SigmaFactorBS="aaaaaacaaagcgccctggtatgcctgcaaaaaaatgagaaa
                     tTATGCTAGACTAAAAGGAAAaacatggttagaggtgtaggtttaccgtatgattcaa
                     t"
                     /listShort="ycxB"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(387014)
                     /Source="Nicolas_upshifts"
                     /id="U271"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=3105
                     /SigmaFactorBS="aaaaaacaaagcgccctggtatgcctgcaaaaaaatgagaaa
                     tTATGCTAGACTAAAAGGAAAaacatggttagaggtgtaggtttaccgtatgattcaa
                     t"
                     /listShort="ycxB"
                     /GFF_Attribute="listLong"
     CDS             complement(387037..387975)
                     /gene="ycxC"
                     /locus_tag="BSU_03550"
                     /old_locus_tag="BSU03550"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388237.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03550"
                     /db_xref="EnsemblGenomes-Tr:CAB12149"
                     /db_xref="GOA:Q08794"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG10174"
                     /db_xref="UniProtKB/Swiss-Prot:Q08794"
                     /translation="MVKHQQTPAYIAAILYSFIIGLSFLFVKIALQTAEPFDILAHRF
                     TIAFAAATVPILFGWVKLSIRVKDVIDILPLALLYPALFFSFQAFGLVYSSSSEAGII
                     QAAIPIFTMVFAAYVLKERPTWTQKGFTVLSVAGVMFIFVMKGVDVESASLKGSLLIL
                     LSALSSAMYNTAARKMTQRFKLTELTYIMSAIGFVVFNAIALVRHGAAGTVGTYFLPF
                     REPGFVLAIVYLGVLSSLVTSFLSNYTLSRIEAFKMSAFNHVSTIVTMIAGFVILNES
                     LAWYHLAGAVCIMIGVVGSNINLEKKTKRPGMPAKK*"
     gene            complement(387037..387975)
                     /gene="ycxC"
                     /locus_tag="BSU_03550"
                     /old_locus_tag="BSU03550"
     promotor_-10    complement(388014..388032)
                     /Source="Nicolas_upshift_promotors"
                     /id="U272"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.536463536463537"
                     /psig="0.536463536463537"
                     /xcortree=793
                     /SigmaFactorBS="tgtaccggtacagttcattgtttttctcATTGTAccgttctg
                     accgcggCCATACAATAAAGGGAGCGaccggcgctgcaattcaggtaaaggagccctt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(388021)
                     /Source="Nicolas_upshifts"
                     /id="U272"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.536463536463537"
                     /psig="0.536463536463537"
                     /xcortree=793
                     /SigmaFactorBS="tgtaccggtacagttcattgtttttctcATTGTAccgttctg
                     accgcggCCATACAATAAAGGGAGCGaccggcgctgcaattcaggtaaaggagccctt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(388048..388053)
                     /Source="Nicolas_upshift_promotors"
                     /id="U272"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.536463536463537"
                     /psig="0.536463536463537"
                     /xcortree=793
                     /SigmaFactorBS="tgtaccggtacagttcattgtttttctcATTGTAccgttctg
                     accgcggCCATACAATAAAGGGAGCGaccggcgctgcaattcaggtaaaggagccctt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             388099..389433
                     /gene="ycxD"
                     /locus_tag="BSU_03560"
                     /old_locus_tag="BSU03560"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 26585522;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388238.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03560"
                     /db_xref="EnsemblGenomes-Tr:CAB12150"
                     /db_xref="GOA:Q08792"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG10175"
                     /db_xref="UniProtKB/Swiss-Prot:Q08792"
                     /translation="MEKYMSLLTRIEEMMQSTSYQEGDRLPSIRQLSARYQVSKSTVI
                     RALQELEKRHLIYSVPKSGYYIVKKSGKSKSGQPGPIDFATSAPDPDVFPYLDFQHCI
                     NKAIDTYKNDLFIYGTPKGLPSLIRVLRKLLATQQVFADERHIFITSGVQQALSLLCA
                     MPFPNGKEKIAIEQPGYHLMVEQLETLGIPAIGVKRTEEGLDIAKVERLFQTESIKFF
                     YTMPRFHNPLGCSLSERDKQELVRLAEAYDVYLVEDDYLGDLEENKKADPLYAYDLSS
                     HVIYLKSFSKMMFPGLRVGAAVLPEALTDTFYAYKKLNDIDCSMISQAALEIYLKSGM
                     YGRHKEKIRDSYKERSLRLHQAIRTHRQLGSGRFTFSSGQAPCMHTHLVLPQDLPASR
                     VIHRLEKQGVLLEAIDRHYLSDYPKENLLKINISNVKTEDIERGVKLLMSHL*"
     gene            388099..389433
                     /gene="ycxD"
                     /locus_tag="BSU_03560"
                     /old_locus_tag="BSU03560"
     CDS             complement(389428..389595)
                     /gene="sfpAc"
                     /locus_tag="BSU_03569"
                     /old_locus_tag="BSU03569"
                     /EC_number="2.7.8.-"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 10568751, 17376553,
                     2848009, 9384377, 14762003, 16707694, 19061923, 20971906,
                     25288929, 26268540; Product type e: enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C-terminal part of 4'-phosphopantetheinyl
                     transferase (Surfactin synthetase-activating enzyme)"
                     /db_xref="PSEUDO:CAX52545.1"
                     /translation="MRLHQDGQVSIELPDSHSPCYIKTYEVDPGYKMAVCAVHPDFPE
                     DITMVSYEELL*"
     gene            complement(389428..389595)
                     /gene="sfpAc"
                     /locus_tag="BSU_03569"
                     /old_locus_tag="BSU03569"
                     /pseudo
     CDS             complement(389606..390103)
                     /gene="sfpAn"
                     /locus_tag="BSU_03570"
                     /old_locus_tag="BSU03570"
                     /EC_number="2.7.8.-"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 10568751, 17376553,
                     2848009, 9384377, 14762003, 16707694, 19061923, 20971906,
                     25288929, 26268540; Product type e: enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-terminal part of 4'-phosphopantetheinyl
                     transferase (surfactin synthetase-activating enzyme)"
                     /db_xref="GOA:P39135"
                     /db_xref="InterPro:IPR004568"
                     /db_xref="InterPro:IPR008278"
                     /db_xref="InterPro:IPR037143"
                     /db_xref="PDB:1QR0"
                     /db_xref="PDB:2GE0"
                     /db_xref="PDB:2GE1"
                     /db_xref="PDB:4MRT"
                     /db_xref="PSEUDO:CAB12151.2"
                     /db_xref="SubtiList:BG10176"
                     /db_xref="UniProtKB/Swiss-Prot:P39135"
                     /translation="MKIYGIYMDRPLSQEENERFMSFISPEKREKCRRFYHKEDAHRT
                     LLGDVLVRSVISRQYQLDKSDIRFSTQEYGKPCIPDLPDAHFNISHSGRWVICAFDSQ
                     PIGIDIEKTKPISLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWSMKESFIKQGRQR
                     LIASA*"
     gene            complement(389606..390103)
                     /gene="sfpAn"
                     /locus_tag="BSU_03570"
                     /old_locus_tag="BSU03570"
                     /pseudo
     misc_feature    complement(390130..390149)
                     /Source="Nicolas_upshift_promotors"
                     /id="U273"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2243
                     /SigmaFactorBS="agccgccttggctttgtttttttattttctcctctatatgag
                     tcttgtggaagTATGATAGGATGGTTTTGACaatcttttgcagacggaggatctagaa
                     t"
                     /listShort="sfp, sfp"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(390142)
                     /Source="Nicolas_upshifts"
                     /id="U273"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2243
                     /SigmaFactorBS="agccgccttggctttgtttttttattttctcctctatatgag
                     tcttgtggaagTATGATAGGATGGTTTTGACaatcttttgcagacggaggatctagaa
                     t"
                     /listShort="sfp, sfp"
                     /GFF_Attribute="listLong"
     CDS             complement(390208..390855)
                     /gene="yczE"
                     /locus_tag="BSU_03580"
                     /old_locus_tag="BSU03580"
                     /function="15.11: Biosynthesis of natural products"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16850406,
                     17827323, 14762003, 16707694, 17827323, 25288929; Product
                     type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="integral inner membrane protein regulating
                     antibiotic production"
                     /protein_id="NP_388240.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03580"
                     /db_xref="EnsemblGenomes-Tr:CAB12152"
                     /db_xref="GOA:O34927"
                     /db_xref="SubtiList:BG12779"
                     /db_xref="UniProtKB/Swiss-Prot:O34927"
                     /translation="MKQELVLRWTFYFAGLIILAFGVSLTIEGKALGISPWDAFHYSL
                     FQHFGLTVGQWSIIIGALIVGFTSLFTRAWPKIGALLNMVLIGVFIDFFNFILPALST
                     YTGSIIVFSLGVVLIGYGVGVYVSAGLGAGPRDSLMMLITEKTGWNVQWVRNGMELTI
                     LFAAWGMGGPIGFGTILTAILTGLILRFSLPQSIQLLNYAVARRTAAVKASPPVH*"
     gene            complement(390208..390855)
                     /gene="yczE"
                     /locus_tag="BSU_03580"
                     /old_locus_tag="BSU03580"
     promotor_-10    complement(390884..390903)
                     /Source="Nicolas_upshift_promotors"
                     /id="U274"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2616
                     /SigmaFactorBS="tttttttgttgagcccctttcgccTATTCcgcccttctgtca
                     gaTGTGCTACAATGACAATCGActgatttttacgaaagaagggacctcacgtgaagca
                     a"
                     /listShort="yczE, sfp, sfp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(390887)
                     /Source="Nicolas_upshifts"
                     /id="U274"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2616
                     /SigmaFactorBS="tttttttgttgagcccctttcgccTATTCcgcccttctgtca
                     gaTGTGCTACAATGACAATCGActgatttttacgaaagaagggacctcacgtgaagca
                     a"
                     /listShort="yczE, sfp, sfp"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(390919..390923)
                     /Source="Nicolas_upshift_promotors"
                     /id="U274"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2616
                     /SigmaFactorBS="tttttttgttgagcccctttcgccTATTCcgcccttctgtca
                     gaTGTGCTACAATGACAATCGActgatttttacgaaagaagggacctcacgtgaagca
                     a"
                     /listShort="yczE, sfp, sfp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(391024..391175)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_409056_409207_c"
                     /HighExp="G180, G135, dia15, H2O2, Diami, S8, Oxctl, G150,
                     LPhT, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S127"
     CDS             complement(391176..391919)
                     /gene="tcyC"
                     /locus_tag="BSU_03590"
                     /old_locus_tag="BSU03590"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15262924, 16513748, 22212096"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15262924, 16513748,
                     22212096; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388241.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03590"
                     /db_xref="EnsemblGenomes-Tr:CAB12153"
                     /db_xref="GOA:P39456"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR030679"
                     /db_xref="SubtiList:BG11185"
                     /db_xref="UniProtKB/Swiss-Prot:P39456"
                     /translation="MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLL
                     RCLNALEIPNRGELAFDDFSIDFSKKVKQADILKLRRKSGMVFQAYHLFPHRTALENV
                     MEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPE
                     LMLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVI
                     VEQGPPEQIFSAPKEERTQRFLNRILNPL*"
     gene            complement(391176..391919)
                     /gene="tcyC"
                     /locus_tag="BSU_03590"
                     /old_locus_tag="BSU03590"
     downshifts      complement(391232)
                     /Source="Nicolas_upshifts"
                     /id="D157"
                     /incds=0
                     /nref=72
                     /ntot=232
                     /MaxReadThrough="4.60958"
                     /MaxDrop="4.44283"
                     /score="1.62131565"
                     /energy="-12.6"
                     /TU="U275"
                     /idTUdmin="U276"
                     /TUdmin=4
                     /isTUend="TRUE"
     CDS             complement(391933..392637)
                     /gene="tcyB"
                     /locus_tag="BSU_03600"
                     /old_locus_tag="BSU03600"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15262924, 15849754, 16850406, 22212096"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15262924, 15849754,
                     16850406, 22212096; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter (permease)"
                     /protein_id="NP_388242.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03600"
                     /db_xref="EnsemblGenomes-Tr:CAB12154"
                     /db_xref="GOA:P42200"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR010065"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11186"
                     /db_xref="UniProtKB/Swiss-Prot:P42200"
                     /translation="MFLNNLPALTLGTAIPWDLVQQSFWPILSGGIYYTIPLTILSFI
                     FGMILALITALARMSKVRPLRWVFSVYVSAIRGTPLLVQLFIIFYLFPAFNVTLDPFP
                     SAVIAFSLNVGAYASEIIRASILSVPKGQWEAGYTIGMTHQKTLFRVILPQAFRVSIP
                     PLSNTFISLIKDTSLASQILVAELFRKAQEIGARNLDQILVIYIEAAFIYWIICFLLS
                     LVQHVIERRLDRYVAK*"
     gene            complement(391933..392637)
                     /gene="tcyB"
                     /locus_tag="BSU_03600"
                     /old_locus_tag="BSU03600"
     CDS             complement(392624..393430)
                     /gene="tcyA"
                     /locus_tag="BSU_03610"
                     /old_locus_tag="BSU03610"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15262924, 22212096"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15262924, 22212096;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter (substrate-binding
                     lipoprotein)"
                     /protein_id="NP_388243.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03610"
                     /db_xref="EnsemblGenomes-Tr:CAB12155"
                     /db_xref="GOA:P42199"
                     /db_xref="InterPro:IPR001638"
                     /db_xref="InterPro:IPR018313"
                     /db_xref="SubtiList:BG11187"
                     /db_xref="UniProtKB/Swiss-Prot:P42199"
                     /translation="MKKALLALFMVVSIAALAACGAGNDNQSKDNAKDGDLWASIKKK
                     GVLTVGTEGTYEPFTYHDKDTDKLTGYDVEVITEVAKRLGLKVDFKETQWDSMFAGLN
                     SKRFDVVANQVGKTDREDKYDFSDKYTTSRAVVVTKKDNNDIKSEADVKGKTSAQSLT
                     SNYNKLATNAGAKVEGVEGMAQALQMIQQGRVDMTYNDKLAVLNYLKTSGNKNVKIAF
                     ETGEPQSTYFTFRKGSGEVVDQVNKALKEMKEDGTLSKISKKWFGEDVSK*"
     gene            complement(392624..393430)
                     /gene="tcyA"
                     /locus_tag="BSU_03610"
                     /old_locus_tag="BSU03610"
     promotor_-10    complement(393479..393498)
                     /Source="Nicolas_upshift_promotors"
                     /id="U275"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.987012987012987"
                     /xcortree=1798
                     /SigmaFactorBS="ttttaaaagattttgtcttatgaaaaccaaatACTTGACTca
                     tactaaaaaaaAGTTATCCTTTAGATTTGTAagctaattttttatttcaataaaatca
                     a"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(393491)
                     /Source="Nicolas_upshifts"
                     /id="U275"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.987012987012987"
                     /xcortree=1798
                     /SigmaFactorBS="ttttaaaagattttgtcttatgaaaaccaaatACTTGACTca
                     tactaaaaaaaAGTTATCCTTTAGATTTGTAagctaattttttatttcaataaaatca
                     a"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(393512..393519)
                     /Source="Nicolas_upshift_promotors"
                     /id="U275"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.987012987012987"
                     /xcortree=1798
                     /SigmaFactorBS="ttttaaaagattttgtcttatgaaaaccaaatACTTGACTca
                     tactaaaaaaaAGTTATCCTTTAGATTTGTAagctaattttttatttcaataaaatca
                     a"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(393546..394418)
                     /gene="bsdA"
                     /locus_tag="BSU_03620"
                     /old_locus_tag="BSU03620"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17295427"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17295427; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator BsdA (LysR
                     family)"
                     /protein_id="NP_388244.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03620"
                     /db_xref="EnsemblGenomes-Tr:CAB12156"
                     /db_xref="GOA:P94403"
                     /db_xref="InterPro:IPR000847"
                     /db_xref="InterPro:IPR005119"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12022"
                     /db_xref="UniProtKB/Swiss-Prot:P94403"
                     /translation="MDIRQLRYFITIAQEQKITSAAKKLHMAQPPLSRQLKQLEDELG
                     VVLFDRNKKKQMTLTYEGAVFLKRAKEILHRFEDAVIEVQELKEEVAGTLAVGSTIYC
                     AALMLEKVTQIKERYPHLTFNIWENEPATLLELLESRQIDAAVTTTLIKSDTVQFKQL
                     DDIPCVLVLSDEAGYPCGDTIKMVDIPSFPLILLRPVNGKGVYNQVMNEFHRLNLEPR
                     IVCECHDSATLLSLVSSGFGASILPVTMIPVHMRNHVHTVHIENNPFIMTPAVMWRTD
                     SYLPKPAQQFLDLF*"
     gene            complement(393546..394418)
                     /gene="bsdA"
                     /locus_tag="BSU_03620"
                     /old_locus_tag="BSU03620"
     promotor_-10    complement(394156..394174)
                     /Source="Nicolas_upshift_promotors"
                     /id="U276"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=148
                     /SigmaFactorBS="ctaaaaagagcaaaagagattctgcataGGTTTGAagatgca
                     gtcattgAGGTACAGGAGCTGAAGGAggaagtagccggtacacttgccgtgggatcaa
                     c"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(394163)
                     /Source="Nicolas_upshifts"
                     /id="U276"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=148
                     /SigmaFactorBS="ctaaaaagagcaaaagagattctgcataGGTTTGAagatgca
                     gtcattgAGGTACAGGAGCTGAAGGAggaagtagccggtacacttgccgtgggatcaa
                     c"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(394189..394195)
                     /Source="Nicolas_upshift_promotors"
                     /id="U276"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=148
                     /SigmaFactorBS="ctaaaaagagcaaaagagattctgcataGGTTTGAagatgca
                     gtcattgAGGTACAGGAGCTGAAGGAggaagtagccggtacacttgccgtgggatcaa
                     c"
                     /listShort="tcyA, tcyB, tcyC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    394472..394479
                     /Source="Nicolas_upshift_promotors"
                     /id="U278"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig="0.97902097902098"
                     /xcortree=1580
                     /SigmaFactorBS="ccttttaggtattaattatagatttaatagaTATTTTTCata
                     tggatatatcAGGAGTATGATTGAAATGAAagcagaattcaagcgtaaaggagggggc
                     a"
                     /listShort="ubiX, ubiD, bsdD, yclD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(394487..394506)
                     /Source="Nicolas_upshift_promotors"
                     /id="U277"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.978021978021978"
                     /psig="0.985014985014985"
                     /xcortree=1966
                     /SigmaFactorBS="cgagtttcactttgccccctcctttaCGCTTGAAttctgctt
                     tcattTCAATCATACTCCTGATATAtccatatgaaaaatatctattaaatctataatt
                     a"
                     /listShort="yclA"
                     /listLong="tcyA, tcyB, tcyC"
                     /label="promotor_-10"
     promotor_-10    394493..394512
                     /Source="Nicolas_upshift_promotors"
                     /id="U278"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig="0.97902097902098"
                     /xcortree=1580
                     /SigmaFactorBS="ccttttaggtattaattatagatttaatagaTATTTTTCata
                     tggatatatcAGGAGTATGATTGAAATGAAagcagaattcaagcgtaaaggagggggc
                     a"
                     /listShort="ubiX, ubiD, bsdD, yclD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(394493)
                     /Source="Nicolas_upshifts"
                     /id="U277"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.978021978021978"
                     /psig="0.985014985014985"
                     /xcortree=1966
                     /SigmaFactorBS="cgagtttcactttgccccctcctttaCGCTTGAAttctgctt
                     tcattTCAATCATACTCCTGATATAtccatatgaaaaatatctattaaatctataatt
                     a"
                     /listShort="yclA"
                     /listLong="tcyA, tcyB, tcyC"
     upshifts        394501
                     /Source="Nicolas_upshifts"
                     /id="U278"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig="0.97902097902098"
                     /xcortree=1580
                     /SigmaFactorBS="ccttttaggtattaattatagatttaatagaTATTTTTCata
                     tggatatatcAGGAGTATGATTGAAATGAAagcagaattcaagcgtaaaggagggggc
                     a"
                     /listShort="ubiX, ubiD, bsdD, yclD"
                     /GFF_Attribute="listLong"
     CDS             394508..395122
                     /gene="ubiX"
                     /locus_tag="BSU_03630"
                     /old_locus_tag="BSU03630"
                     /EC_number="4.1.1.-"
                     /EC_number="4.1.1.61"
                     /function="3.2: Degradation"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 10919793, 15979273,
                     17295427, 18388975, 26083743, 26658822, 26337367; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phenolic acid decarboxylase-flavin
                     prenyltransferase subunit"
                     /protein_id="NP_388245.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03630"
                     /db_xref="EnsemblGenomes-Tr:CAB12157"
                     /db_xref="GOA:P94404"
                     /db_xref="InterPro:IPR003382"
                     /db_xref="InterPro:IPR004507"
                     /db_xref="InterPro:IPR032901"
                     /db_xref="InterPro:IPR036551"
                     /db_xref="SubtiList:BG12023"
                     /db_xref="UniProtKB/Swiss-Prot:P94404"
                     /translation="MKAEFKRKGGGKVKLVVGMTGATGAIFGVRLLQWLKAAGVETHL
                     VVSPWANVTIKHETGYTLQEVEQLATYTYSHKDQAAAISSGSFDTDGMIVAPCSMKSL
                     ASIRTGMADNLLTRAADVMLKERKKLVLLTRETPLNQIHLENMLALTKMGTIILPPMP
                     AFYNRPRSLEEMVDHIVFRTLDQFGIRLPEAKRWNGIEKQKGGA*"
     gene            394508..395122
                     /gene="ubiX"
                     /locus_tag="BSU_03630"
                     /old_locus_tag="BSU03630"
     promotor_-35    complement(394520..394527)
                     /Source="Nicolas_upshift_promotors"
                     /id="U277"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.978021978021978"
                     /psig="0.985014985014985"
                     /xcortree=1966
                     /SigmaFactorBS="cgagtttcactttgccccctcctttaCGCTTGAAttctgctt
                     tcattTCAATCATACTCCTGATATAtccatatgaaaaatatctattaaatctataatt
                     a"
                     /listShort="yclA"
                     /listLong="tcyA, tcyB, tcyC"
                     /label="promotor_-35"
     CDS             395125..396546
                     /gene="bsdC"
                     /locus_tag="BSU_03640"
                     /old_locus_tag="BSU03640"
                     /EC_number="4.1.1.61"
                     /EC_number="4.1.1.-"
                     /function="3.2: Degradation"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 11029449, 15979273,
                     17295427, 18388975, 26658822, 26337367; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous phenolic acid decarboxylase
                     subunit;1,4-dihydroxy-2-naphtoate-heptaprenyl
                     diphosphatedecarboxylase"
                     /protein_id="NP_388246.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03640"
                     /db_xref="EnsemblGenomes-Tr:CAB12158"
                     /db_xref="GOA:P94405"
                     /db_xref="InterPro:IPR002830"
                     /db_xref="InterPro:IPR012349"
                     /db_xref="InterPro:IPR032902"
                     /db_xref="SubtiList:BG12024"
                     /db_xref="UniProtKB/Swiss-Prot:P94405"
                     /translation="MAYQDFREFLAALEKEGQLLTVNEEVKPEPDLGASARAASNLGD
                     KSPALLFNNIYGYHNARIAMNVIGSWPNHAMMLGMPKDTPVKEQFFEFAKRYDQFPMP
                     VKREETAPFHENEITEDINLFDILPLFRINQGDGGYYLDKACVISRDLEDPDNFGKQN
                     VGIYRMQVKGKDRLGIQPVPQHDIAIHLRQAEERGINLPVTIALGCEPVITTAASTPL
                     LYDQSEYEMAGAIQGEPYRIVKSKLSDLDVPWGAEVVLEGEIIAGEREYEGPFGEFTG
                     HYSGGRSMPIIKIKRVYHRNNPIFEHLYLGMPWTECDYMIGINTCVPLYQQLKEAYPN
                     EIVAVNAMYTHGLIAIVSTKTRYGGFAKAVGMRALTTPHGLGYCKMVIVVDEDVDPFN
                     LPQVMWALSTKMHPKHDAVIIPDLSVLPLDPGSNPSGITHKMILDATTPVAPETRGHY
                     SQPLDSPLTTKEWEQKLMDLMNK*"
     gene            395125..396546
                     /gene="bsdC"
                     /locus_tag="BSU_03640"
                     /old_locus_tag="BSU03640"
     CDS             396563..396790
                     /gene="bsdD"
                     /locus_tag="BSU_03651"
                     /old_locus_tag="BSU03651"
                     /EC_number="4.1.1.91"
                     /EC_number="4.1.1.-"
                     /EC_number="4.1.1.61"
                     /function="3.2: Degradation"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 15979273, 17295427,
                     18388975, 26658822; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phenolic acid decarboxylase subunit"
                     /protein_id="YP_003097675.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03651"
                     /db_xref="EnsemblGenomes-Tr:CAX52546"
                     /db_xref="GOA:C0H3U9"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3U9"
                     /translation="MHTCPRCDSKKGEVMSKSPVEGAWEVYQCQTCFFTWRSCEPESI
                     TNPEKYNPAFKIDPKETETAIEVPAVPERKA*"
     gene            396563..396790
                     /gene="bsdD"
                     /locus_tag="BSU_03651"
                     /old_locus_tag="BSU03651"
     CDS             396787..397251
                     /gene="yclD"
                     /locus_tag="BSU_03652"
                     /old_locus_tag="BSU03652"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15979273, 18388975;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative FMN-binding enzyme subunit"
                     /protein_id="NP_388247.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03652"
                     /db_xref="EnsemblGenomes-Tr:CAB12159"
                     /db_xref="GOA:C0SPB5"
                     /db_xref="InterPro:IPR012349"
                     /db_xref="SubtiList:BG12025"
                     /db_xref="UniProtKB/Swiss-Prot:C0SPB5"
                     /translation="MIRVNCMSDRLFELLDGSCLNEKQHEAFVLQTVSEDGWPHAAMI
                     SAGEIIALSRTDIRIALWKNTMTSANILRTGKAQFTAWWKGAAYYVKLECAPLPPLKD
                     AEYERDRFSCRIVSVKEDVAKYADLTSGVRIQLHSPEEVLSRWKKTLEDLKR*"
     gene            396787..397251
                     /gene="yclD"
                     /locus_tag="BSU_03652"
                     /old_locus_tag="BSU03652"
     downshifts      397232
                     /Source="Nicolas_upshifts"
                     /id="D158"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="3.32586"
                     /MaxDrop="3.88166"
                     /score="45.8937489"
                     /energy="-15.1"
                     /TU="NA"
                     /idTUdmin="U278"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_feature    397258..397259
                     /Source="Nicolas_upshift_promotors"
                     /id="U279"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.357642357642358"
                     /psig="0.557442557442557"
                     /xcortree=3132
                     /SigmaFactorBS="ctgaagaggtgctgagcagatggaaaaagaccctggaagatt
                     taaaacggtaatatcgaTAgcctgacgccatgcgtcaggctttttttatataatgaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        397259
                     /Source="Nicolas_upshifts"
                     /id="U279"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.357642357642358"
                     /psig="0.557442557442557"
                     /xcortree=3132
                     /SigmaFactorBS="ctgaagaggtgctgagcagatggaaaaagaccctggaagatt
                     taaaacggtaatatcgaTAgcctgacgccatgcgtcaggctttttttatataatgaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             397318..398163
                     /gene="yclE"
                     /locus_tag="BSU_03660"
                     /old_locus_tag="BSU03660"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388248.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03660"
                     /db_xref="EnsemblGenomes-Tr:CAB12160"
                     /db_xref="GOA:P94407"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12026"
                     /db_xref="UniProtKB/Swiss-Prot:P94407"
                     /translation="MERAGICHSDGFDLAYRIEGEGAPILVIGSAVYYPRLFSSDIKQ
                     KYQWVFVDHRGFAKPKRELRAEDSRLDAVLADIERMRTFLQLEDVTILGHSGHAFMAL
                     EYARTYPKQVRKVALFNTAPDNSEERQRKSESFFMETASLERKKRFEKDIENLPQDID
                     KDPERRFVHMCIRAEAKSFYQERPHAAALWDGVFTNMPIIDELWGNTFARIDLLQRLA
                     DVRMPVYIGLGRYDYLVAPVSLWDAVDGLYPHVDKVIFEKSGHQPMLEEPEAFDQSFR
                     KWLDQ*"
     gene            397318..398163
                     /gene="yclE"
                     /locus_tag="BSU_03660"
                     /old_locus_tag="BSU03660"
     CDS             complement(398203..399681)
                     /gene="dtpT"
                     /locus_tag="BSU_03670"
                     /old_locus_tag="BSU03670"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8458848, 11717292, 15849754,
                     16204487, 16850406, 17496096, 23144141, 25966844; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="di-tripeptide-proton ABC symporter"
                     /protein_id="NP_388249.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03670"
                     /db_xref="EnsemblGenomes-Tr:CAB12175"
                     /db_xref="GOA:P94408"
                     /db_xref="InterPro:IPR000109"
                     /db_xref="InterPro:IPR005279"
                     /db_xref="InterPro:IPR018456"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12027"
                     /db_xref="UniProtKB/Swiss-Prot:P94408"
                     /translation="MASIDNESIIKSVPQKGFFGHPRGLFTLFFTEFWERFSYYGMRA
                     ILLYYLYTETVNGGLGFDKGTAVAIMSIYGSLVYMSTIIGGWLADRVFGTANTVFYGG
                     IFIMFGHIALAYPGSSIAFYISMVLIIVGTGLLKPNVSSVVGDLYTKEDPRRDSGFSI
                     FYMGINLGGLLAPLIVGTLGQKYNYHLGFGAAAVGMLLGLIVFALTRKKNLGLAGSNV
                     PNPLSKKSAIGTGIGVIIVAIAVIISVQTGVLTIKRFIDLVSILGILIPVIYFIIMFT
                     SKKADKTEKSRLAAYVPLFIGAVMFWAIQEQGATILAVYADERIRLSLGGFELQSSWF
                     QSLNPLFVVIFAPIFAWLWMKLGKRQPSTPVKFSIGIILAGLSFIIMVFPAMQGKEAL
                     VSPLWLVLSFLLVVLGELCLSPVGLSVTTKLAPAAFSAQTMSMWFLTNAAAQAINAQV
                     AGLFDKIPETMYFGTIGLISIVLGGILLLLSPVIKRAMKGVL*"
     gene            complement(398203..399681)
                     /gene="dtpT"
                     /locus_tag="BSU_03670"
                     /old_locus_tag="BSU03670"
     downshifts      complement(398211)
                     /Source="Nicolas_upshifts"
                     /id="D159"
                     /incds=0
                     /nref=17
                     /ntot=90
                     /MaxReadThrough="1.40624"
                     /MaxDrop="3.91827"
                     /score="43.5753464"
                     /energy="-21"
                     /TU="NA"
                     /idTUdmin="U281"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    399708..399710
                     /Source="Nicolas_upshift_promotors"
                     /id="U280"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.257742257742258"
                     /psig="0.581418581418581"
                     /xcortree=1444
                     /SigmaFactorBS="ctttcgttatcaatcgaagccatgtcagccaaaccctttcta
                     aaaaaagTGTattataaaaatcatatTCTTATATAATACTTGTGTcaatataatttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(399709..399728)
                     /Source="Nicolas_upshift_promotors"
                     /id="U281"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.97002997002997"
                     /xcortree=1442
                     /SigmaFactorBS="tttttccaatatggaactatttgaaatgagtataaattaTAT
                     TGACAcaagtattatataaGAATATGATTTTTATAATACactttttttagaaagggtt
                     t"
                     /listShort="dtpT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        399719
                     /Source="Nicolas_upshifts"
                     /id="U280"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.257742257742258"
                     /psig="0.581418581418581"
                     /xcortree=1444
                     /SigmaFactorBS="ctttcgttatcaatcgaagccatgtcagccaaaccctttcta
                     aaaaaagTGTattataaaaatcatatTCTTATATAATACTTGTGTcaatataatttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    399727..399745
                     /Source="Nicolas_upshift_promotors"
                     /id="U280"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.257742257742258"
                     /psig="0.581418581418581"
                     /xcortree=1444
                     /SigmaFactorBS="ctttcgttatcaatcgaagccatgtcagccaaaccctttcta
                     aaaaaagTGTattataaaaatcatatTCTTATATAATACTTGTGTcaatataatttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(399729)
                     /Source="Nicolas_upshifts"
                     /id="U281"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.97002997002997"
                     /xcortree=1442
                     /SigmaFactorBS="tttttccaatatggaactatttgaaatgagtataaattaTAT
                     TGACAcaagtattatataaGAATATGATTTTTATAATACactttttttagaaagggtt
                     t"
                     /listShort="dtpT"
                     /GFF_Attribute="listLong"
     S_feature       complement(399731..400235)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_417763_418267_c"
                     /HighExp="S3, S4, LoTm, S5, S6, T5.0H, T4.0H, M9-stat, S8,
                     T3.30H"
                     /AntisenseName="yclG"
                     /AntisenseCor="0.33937447534762299"
                     /AntisenseRegPval="-7.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S128"
     promotor_-35    complement(399743..399750)
                     /Source="Nicolas_upshift_promotors"
                     /id="U281"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig="0.97002997002997"
                     /xcortree=1442
                     /SigmaFactorBS="tttttccaatatggaactatttgaaatgagtataaattaTAT
                     TGACAcaagtattatataaGAATATGATTTTTATAATACactttttttagaaagggtt
                     t"
                     /listShort="dtpT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    399899..399908
                     /Source="Nicolas_upshift_promotors"
                     /id="U282"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1425
                     /SigmaFactorBS="attcctttatatttttttaataaaattttagagaaatGTACA
                     AGCAGatcgggcctttgTGAGTAACATGATAGTAATCatagagaaggaggctcgcaat
                     t"
                     /listShort="yclG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    399921..399940
                     /Source="Nicolas_upshift_promotors"
                     /id="U282"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1425
                     /SigmaFactorBS="attcctttatatttttttaataaaattttagagaaatGTACA
                     AGCAGatcgggcctttgTGAGTAACATGATAGTAATCatagagaaggaggctcgcaat
                     t"
                     /listShort="yclG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        399922
                     /Source="Nicolas_upshifts"
                     /id="U282"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1425
                     /SigmaFactorBS="attcctttatatttttttaataaaattttagagaaatGTACA
                     AGCAGatcgggcctttgTGAGTAACATGATAGTAATCatagagaaggaggctcgcaat
                     t"
                     /listShort="yclG"
                     /GFF_Attribute="listLong"
     CDS             399961..401715
                     /gene="yclG"
                     /locus_tag="BSU_03680"
                     /old_locus_tag="BSU03680"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative uronase"
                     /protein_id="NP_388250.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03680"
                     /db_xref="EnsemblGenomes-Tr:CAB12176"
                     /db_xref="InterPro:IPR006626"
                     /db_xref="InterPro:IPR006633"
                     /db_xref="InterPro:IPR011050"
                     /db_xref="InterPro:IPR012334"
                     /db_xref="InterPro:IPR024535"
                     /db_xref="SubtiList:BG12028"
                     /db_xref="UniProtKB/Swiss-Prot:P94409"
                     /translation="MAEFILNAADFGVPRDGKTDSTERINQCLSTAVSKGYHTVWFPK
                     GTYLIDATLGGDLNQRFRNAGIIVPGNLEIMMDPECIMKVIPNSSWGYSAFYVGKQEN
                     ITISGGQIIGERDEHTYASAGIRSTHEWGFGICIEGCSNVVIDDVKISDFTGDGIIVS
                     PRGLKTNQDYRTSEQIIIRRCEVRRSRRNNISITGCDMVTVEECLIEDAGTGNGTAPK
                     FGIDIEGYGEGDVDYEEPINVSIRNNHFVGNVSSSVTNFNGYGILIEGNHSDNTISYG
                     YGTQTVIKGNILRRPEDAAAAPRVGITGLGVSQGKETSDAVIAGNLITGFSTGIDVRG
                     KSVLVTNNKISNFENTGILVYQSSDVKVDGNQIQNGLSETRRSIGLRAVLSDDIAFLN
                     NCLIQVVDGVNVSGGNMIIKDNLLRKFSRGIWIAQGNAVIEGNTLNPDAFEAVPESYS
                     VSVTNNAGAIIKNNTFKEFKNYPIYCSTSAKTSIIGNHLERSPLLVTIYISAGVHEIF
                     DNTISVNRTAGNPIVIYLNGSAGSIISGNTINNLSAGTATAIQTNTSTNSKIIGNRIF
                     KGTINKHSSDTIDGNMIV*"
     gene            399961..401715
                     /gene="yclG"
                     /locus_tag="BSU_03680"
                     /old_locus_tag="BSU03680"
     promotor_-10    complement(400232..400250)
                     /Source="Nicolas_upshift_promotors"
                     /id="U283"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1003
                     /SigmaFactorBS="atcccgttcgccgataatttgtcctccggaaataGTTATAtt
                     ctcttgcttgcctACATAAAATGCGGAATAACcccacgaactattcggtatcactttc
                     a"
                     /listShort="S128, dtpT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(400245)
                     /Source="Nicolas_upshifts"
                     /id="U283"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1003
                     /SigmaFactorBS="atcccgttcgccgataatttgtcctccggaaataGTTATAtt
                     ctcttgcttgcctACATAAAATGCGGAATAACcccacgaactattcggtatcactttc
                     a"
                     /listShort="S128, dtpT"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(400266..400271)
                     /Source="Nicolas_upshift_promotors"
                     /id="U283"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1003
                     /SigmaFactorBS="atcccgttcgccgataatttgtcctccggaaataGTTATAtt
                     ctcttgcttgcctACATAAAATGCGGAATAACcccacgaactattcggtatcactttc
                     a"
                     /listShort="S128, dtpT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      401706
                     /Source="Nicolas_upshifts"
                     /id="D160"
                     /incds=0
                     /nref=6
                     /ntot=21
                     /MaxReadThrough="0.325519999999999"
                     /MaxDrop="4.9689"
                     /score="4.29139266"
                     /energy="-5.4"
                     /TU="NA"
                     /idTUdmin="U282"
                     /TUdmin=7
                     /isTUend="TRUE"
     CDS             complement(401731..401952)
                     /gene="yczF"
                     /locus_tag="BSU_03690"
                     /old_locus_tag="BSU03690"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388251.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03690"
                     /db_xref="EnsemblGenomes-Tr:CAB12177"
                     /db_xref="GOA:O31479"
                     /db_xref="SubtiList:BG12780"
                     /db_xref="UniProtKB/Swiss-Prot:O31479"
                     /translation="MKILGVTGFILICLLAISVLMDMLQGFSLTKAVYNNMSSFKMTT
                     FAEWVVLLFFVLVLVREMYVIYKSKKKNP*"
     gene            complement(401731..401952)
                     /gene="yczF"
                     /locus_tag="BSU_03690"
                     /old_locus_tag="BSU03690"
     promotor_-10    complement(401971..401982)
                     /Source="Nicolas_upshift_promotors"
                     /id="U284"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=857
                     /SigmaFactorBS="aaattgagattatgcattagggttagatgcGGTATAActtct
                     ccgccaaagATAGACACTAAAagcggaggatgatgaagcatgaagatattgggcgtga
                     c"
                     /listShort="yczF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(401973)
                     /Source="Nicolas_upshifts"
                     /id="U284"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=857
                     /SigmaFactorBS="aaattgagattatgcattagggttagatgcGGTATAActtct
                     ccgccaaagATAGACACTAAAagcggaggatgatgaagcatgaagatattgggcgtga
                     c"
                     /listShort="yczF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(401997..402003)
                     /Source="Nicolas_upshift_promotors"
                     /id="U284"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=857
                     /SigmaFactorBS="aaattgagattatgcattagggttagatgcGGTATAActtct
                     ccgccaaagATAGACACTAAAagcggaggatgatgaagcatgaagatattgggcgtga
                     c"
                     /listShort="yczF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    402018..402024
                     /Source="Nicolas_upshift_promotors"
                     /id="U285"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=903
                     /SigmaFactorBS="gagaagttataccgcatctaaccctaaTGCATAAtctcaatt
                     ttaaaAGGAAGAATATGagaaaacgacaaggaaaggtatttgtgtatgcctttatttt
                     c"
                     /listShort="gerKA, gerKC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    402038..402049
                     /Source="Nicolas_upshift_promotors"
                     /id="U285"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=903
                     /SigmaFactorBS="gagaagttataccgcatctaaccctaaTGCATAAtctcaatt
                     ttaaaAGGAAGAATATGagaaaacgacaaggaaaggtatttgtgtatgcctttatttt
                     c"
                     /listShort="gerKA, gerKC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        402051
                     /Source="Nicolas_upshifts"
                     /id="U285"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=903
                     /SigmaFactorBS="gagaagttataccgcatctaaccctaaTGCATAAtctcaatt
                     ttaaaAGGAAGAATATGagaaaacgacaaggaaaggtatttgtgtatgcctttatttt
                     c"
                     /listShort="gerKA, gerKC"
                     /GFF_Attribute="listLong"
     CDS             402078..403712
                     /gene="gerKA"
                     /locus_tag="BSU_03700"
                     /old_locus_tag="BSU03700"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10762253, 16707705, 16740944"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10762253, 16707705,
                     16740944; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination receptor subunit"
                     /protein_id="NP_388252.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03700"
                     /db_xref="EnsemblGenomes-Tr:CAB12178"
                     /db_xref="GOA:P49939"
                     /db_xref="InterPro:IPR004995"
                     /db_xref="SubtiList:BG11392"
                     /db_xref="UniProtKB/Swiss-Prot:P49939"
                     /translation="MPLFSKRKNNTDSKDKQNTDERNQEQQQEKERPVLISPSLAKNI
                     AETKKEVGSSSDVIIREIKIGEQDHVHLAVIYISGLVDNNTIHESLIDPLVQDESIQN
                     THAIQQILEKTLPLGGVKAEKSWDKLFSELMLGNALIFADGHDEALICSTQGGEQRSI
                     QEPSTQVSFRGPRQGFTESLQTNISMIRRYIKNPNLWVEKMKKGSVTNTDIALMYIQG
                     ICDEKVLKEVKQRLEKIDIDSILESGYIEQLIEDETFTTFPTMYHTERPDVVAGNLLE
                     GRFAIIVDGTPFVLIAPALFVQFFQSVEDYYSRFDIATSIRILRVLVFFISLVAPAVY
                     VAATTFHQEMIPTQLLVVIAAQREIVPFPAVVEALTMEVAFEILREAGVRLPRVVGSA
                     VSIVGALVIGQAAVQAGIVSPAMVIIVALTAIASFATPAFAMAISARLIRFIFIIASA
                     VMGFYGLILGIIMMFVHLCSLRSFGVPYMSPLAPFSSQGVKDALFRVPWWADEKRPES
                     VSKEDKVRQGKDQRPEPAASRGMVNKDLEEGDQNGT*"
     gene            402078..403712
                     /gene="gerKA"
                     /locus_tag="BSU_03700"
                     /old_locus_tag="BSU03700"
     CDS             403702..404925
                     /gene="gerKC"
                     /locus_tag="BSU_03710"
                     /old_locus_tag="BSU03710"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10762253, 16707705, 16740944, 19363077"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10762253, 16707705,
                     16740944, 19363077; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination receptor subunit"
                     /protein_id="NP_388253.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03710"
                     /db_xref="EnsemblGenomes-Tr:CAB12179"
                     /db_xref="GOA:P49941"
                     /db_xref="InterPro:IPR008844"
                     /db_xref="SubtiList:BG11394"
                     /db_xref="UniProtKB/Swiss-Prot:P49941"
                     /translation="MVRKCLLAVLMLLSVIVLPGCWDKRELTDLAIISAIGIDRTNDS
                     NYVLHLQIINPGNVAGGLQGGGAGDRPPVSVYSIEGNNITEALRKASMKVSRRLYFAH
                     TNLVVINEKLAKEEGLDFVLDNLDRDTEFRTTATFVVAHKTKAENIVKILTPIDKIPS
                     NKVNKTLDFTEAQYGRVVKINIQDVLKTLAANTMAPVIPGYMMIGDDKKGVSMENTQA
                     TDPKAILQADGLAVFDKAGYLKYWLEDDESVGAVWLMNKIQHTFINADWGKTKDAVSL
                     QVTHQDTKLVPKMRNGRPYIHVKVSVEGIIDAVKYPFQLSDPKVLAAIEKALNKELEK
                     EISHTVKKIKKNKIDFIGFGDTIYRKYPEQWEKMKDTWDKEYLPELPIDVKAETYIRR
                     TGLRNNPIKHQFKDD*"
     gene            403702..404925
                     /gene="gerKC"
                     /locus_tag="BSU_03710"
                     /old_locus_tag="BSU03710"
     CDS             404950..406071
                     /gene="gerKB"
                     /locus_tag="BSU_03720"
                     /old_locus_tag="BSU03720"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10762253, 15849754, 16707705, 16740944, 16850406,
                     19363077"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10762253, 15849754,
                     16707705, 16740944, 16850406, 19363077; Product type cp :
                     cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination receptor subunit"
                     /protein_id="NP_388254.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03720"
                     /db_xref="EnsemblGenomes-Tr:CAB12180"
                     /db_xref="GOA:P49940"
                     /db_xref="InterPro:IPR004761"
                     /db_xref="SubtiList:BG11393"
                     /db_xref="UniProtKB/Swiss-Prot:P49940"
                     /translation="MEKARISIRQLFVMIIIFELGSSLLITPGSMAGRDAWIAVLLGC
                     AIGLFLFYLYQGIYQCYPNSSPKEYMDDMLGTKLSWLFSFLYILYFAYIAARVLRDFG
                     EMLLTFAYHDTPIIIVNALLMVVSIYAVRKGIEVLARAAELLFGAMYLLGAIGLVLII
                     VSGTIDPHNLKPVLANGISPVLHSVFTQTMYVPFGEVVLFVMIFPNLNDRKDVKKMGM
                     IAMAISGLIVALTVAINISVLDVDLTLRSQFPLLSTIQTIKVEEFLDRLDVFFMLALI
                     IGGFFKVSLYLYATVVGTSTLFKEKNPSQLAYPMGLGILILSITIATNFSEHLNEGLN
                     VVPLYIHLPFQLLFPLFLFIVAVWKKKRREKSKGEEAKK*"
     gene            404950..406071
                     /gene="gerKB"
                     /locus_tag="BSU_03720"
                     /old_locus_tag="BSU03720"
     downshifts      406055
                     /Source="Nicolas_upshifts"
                     /id="D161"
                     /incds=0
                     /nref=6
                     /ntot=58
                     /MaxReadThrough="2.55658"
                     /MaxDrop="3.73002"
                     /score="3.39927899"
                     /energy="-10.5"
                     /TU="NA"
                     /idTUdmin="U285"
                     /TUdmin=2200
                     /isTUend="FALSE"
     CDS             complement(406176..406856)
                     /gene="yclH"
                     /locus_tag="BSU_03730"
                     /old_locus_tag="BSU03730"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATPase component)"
                     /protein_id="NP_388255.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03730"
                     /db_xref="EnsemblGenomes-Tr:CAB12181"
                     /db_xref="GOA:P94411"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12029"
                     /db_xref="UniProtKB/Swiss-Prot:P94411"
                     /translation="MSLLQFQQVGYWYKNKSQPLFQDINISFQKGKFYTIVGTSGTGK
                     TTFLSLAGGLDAPKEGNILYDGKAVSKIGLTNFRNQYVSIVFQAYNLLPYMTALQNVT
                     TAMEITGSKEKNKESYALDMLQKVGINEKQARQKVLTLSGGQQQRVSITRAFCCDTDL
                     IVADEPTGNLDEDTSKEIVRLFQDLAHKEDKCVIMVTHDEQIAKVSDINIRLSRGSFT
                     VKENVAVV*"
     gene            complement(406176..406856)
                     /gene="yclH"
                     /locus_tag="BSU_03730"
                     /old_locus_tag="BSU03730"
     CDS             complement(406872..408332)
                     /gene="yclI"
                     /locus_tag="BSU_03740"
                     /old_locus_tag="BSU03740"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="NP_388256.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03740"
                     /db_xref="EnsemblGenomes-Tr:CAB12182"
                     /db_xref="GOA:P94412"
                     /db_xref="InterPro:IPR003838"
                     /db_xref="InterPro:IPR025857"
                     /db_xref="SubtiList:BG12030"
                     /db_xref="UniProtKB/Swiss-Prot:P94412"
                     /translation="MNFIKRAFWNMKAKKGKTLLQLFVFTVICVFVLSGLAIQSAAQK
                     SSELARQELGGSVTLQVDRQKQMEKQQDSGEKRSFESTPIKVSDANKLAALDHVKSYN
                     YTTSASANAGNFDAIESSSSSDSSSSSSSSNAKNSQGGGQGGPQMVQADLSIEGVIST
                     ALVDDFSDGDSKITDGRAITKSDVGKKVTVINETLAEENDLSVGDSITIESATDEDTT
                     VKLKIVGIYKTTSSGDDQAQNFSFLNPYNKLYTPYTATAALKGDDYKNTIDSAVYYMD
                     DAKNMDTFVKAAKKTSIDFDTYTLNTNDQLYQQMVGPIENVASFSKNVVYLVSVAGAV
                     ILGLIVMMSIRERKYEMGVLMAIGEKRWKLIGQFLTEILIVAVIAIGLASVTGNLVAN
                     QLGNQLLSQQISSSTDSTQTASGQMPGGGGGMGGKMFGHSSSNVDVIDSLNVAVSMND
                     MLILGGIGILIAIIATLLPSISVLRLHPKTILTKQE*"
     gene            complement(406872..408332)
                     /gene="yclI"
                     /locus_tag="BSU_03740"
                     /old_locus_tag="BSU03740"
     misc_feature    408502..408521
                     /Source="Nicolas_upshift_promotors"
                     /id="U286"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.962037962037962"
                     /xcortree=1584
                     /SigmaFactorBS="tctagttgatgaaataaaaactaacaattgtgaaacgcaaaa
                     ccttctgtttaaaatGGTGCTATTATATAAAAAAGcatcaaaacaaccggaggatata
                     a"
                     /listShort="yclJ, yclK, S129, rapC, phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        408505
                     /Source="Nicolas_upshifts"
                     /id="U286"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.962037962037962"
                     /xcortree=1584
                     /SigmaFactorBS="tctagttgatgaaataaaaactaacaattgtgaaacgcaaaa
                     ccttctgtttaaaatGGTGCTATTATATAAAAAAGcatcaaaacaaccggaggatata
                     a"
                     /listShort="yclJ, yclK, S129, rapC, phrC"
                     /GFF_Attribute="listLong"
     CDS             408545..409228
                     /gene="yclJ"
                     /locus_tag="BSU_03750"
                     /old_locus_tag="BSU03750"
                     /function="16.10: Respire"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15375128, 20512483"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15375128,
                     20512483; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YclK]
                     (possibly involved in arabinogalactan metabolism)"
                     /protein_id="NP_388257.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03750"
                     /db_xref="EnsemblGenomes-Tr:CAB12183"
                     /db_xref="GOA:P94413"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR001867"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12031"
                     /db_xref="UniProtKB/Swiss-Prot:P94413"
                     /translation="MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEEN
                     WDLIILDIMLPSMDGVTICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPF
                     SPLTLVARIKAVIRRYKATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEF
                     DLLYYLVQNPRQVFSREQLLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKPFLYTVW
                     GVGYKFDED*"
     gene            408545..409228
                     /gene="yclJ"
                     /locus_tag="BSU_03750"
                     /old_locus_tag="BSU03750"
     CDS             409215..410636
                     /gene="yclK"
                     /locus_tag="BSU_03760"
                     /old_locus_tag="BSU03760"
                     /function="16.3: Control"
                     /function="16.10: Respire"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15375128, 20512483"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15375128,
                     20512483; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YclJ]"
                     /protein_id="NP_388258.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03760"
                     /db_xref="EnsemblGenomes-Tr:CAB12184"
                     /db_xref="GOA:P94414"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12032"
                     /db_xref="UniProtKB/Swiss-Prot:P94414"
                     /translation="MMKIKYLYQLLLSHISILILAFVIIISLFSHFVKEFAYQNKVEE
                     LTSYAVQIANEFQSGQVDMRRLYPYQDILSTRKTQFIIFNEEQQPYFLPEGFHHPPRE
                     QLKKSEWNKLKKGQTVTIRADGRFDDEVSLVAQPIFVQNEFKGAVLLISPISGVEQMV
                     NQVNLYMFYAVISTLVITILVSWLLSKFHVKRIQKLREATDKVASGDYDIHLENSYGD
                     EIGVLASDFNIMAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSH
                     TIPEDKKDKCFSLISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEH
                     LQQQAEEKQNKLMIQVEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYK
                     ETIIEIEDTGIGIPKEDIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTV
                     EIKSEEGKGTKFIIRLPLTAKQQ*"
     gene            409215..410636
                     /gene="yclK"
                     /locus_tag="BSU_03760"
                     /old_locus_tag="BSU03760"
     downshifts      410612
                     /Source="Nicolas_upshifts"
                     /id="D162"
                     /incds=0
                     /nref=20
                     /ntot=169
                     /MaxReadThrough="3.43905"
                     /MaxDrop="4.91565"
                     /score="13.4599201"
                     /energy="-15"
                     /TU="U286"
                     /idTUdmin="U286"
                     /TUdmin="-1427"
                     /isTUend="FALSE"
     S_feature       410657..410761
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_428689_428793"
                     /HighExp="Lbstat, nit, ferm, BI, M0t45, M40t45, M0t90, S0,
                     S2, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.962"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S129"
     misc_feature    410751..410770
                     /Source="Nicolas_upshift_promotors"
                     /id="U287"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig="0.986013986013986"
                     /xcortree=678
                     /SigmaFactorBS="tcccgaaaacaaagattgcgtgtttttcgggttgggacggcc
                     tataaaCATGATAAAATATGACATAAacagtttttgatgggagagggtgaaggaatga
                     a"
                     /listShort="rapC, phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        410763
                     /Source="Nicolas_upshifts"
                     /id="U287"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig="0.986013986013986"
                     /xcortree=678
                     /SigmaFactorBS="tcccgaaaacaaagattgcgtgtttttcgggttgggacggcc
                     tataaaCATGATAAAATATGACATAAacagtttttgatgggagagggtgaaggaatga
                     a"
                     /listShort="rapC, phrC"
                     /GFF_Attribute="listLong"
     downshifts      complement(410795)
                     /Source="Nicolas_upshifts"
                     /id="D163"
                     /incds=0
                     /nref=2
                     /ntot=81
                     /MaxReadThrough="1.74985"
                     /MaxDrop="4.10695"
                     /score="1.47729412"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U290"
                     /TUdmin=1320
                     /isTUend="FALSE"
     CDS             410799..411947
                     /gene="rapC"
                     /locus_tag="BSU_03770"
                     /old_locus_tag="BSU03770"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10464187, 12456319, 12897006, 12950917, 15968044,
                     19202088"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10464187, 12456319,
                     12897006, 12950917, 15968044, 19202088; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator aspartate phosphatase"
                     /protein_id="NP_388259.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03770"
                     /db_xref="EnsemblGenomes-Tr:CAB12185"
                     /db_xref="GOA:P94415"
                     /db_xref="InterPro:IPR011990"
                     /db_xref="InterPro:IPR013026"
                     /db_xref="InterPro:IPR019734"
                     /db_xref="SubtiList:BG11966"
                     /db_xref="UniProtKB/Swiss-Prot:P94415"
                     /translation="MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHM
                     QHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQPSLSELSRNIDSNQADLKGLLDY
                     YVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
                     SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQK
                     AQLVGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQ
                     GKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYLDQPNEEGIERCFQYLKNKNMY
                     ADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI*"
     gene            410799..411947
                     /gene="rapC"
                     /locus_tag="BSU_03770"
                     /old_locus_tag="BSU03770"
     promotor_-35    411647..411652
                     /Source="Nicolas_upshift_promotors"
                     /id="U288"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.776223776223776"
                     /psig="0.776223776223776"
                     /xcortree=1063
                     /SigmaFactorBS="caccctgatttattataaacagggaaaacatgataaagcttc
                     GGAATAtcacaagcggggctatGAATATGCTAAAGAAACAGacgatgcagactatgcc
                     g"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        411665
                     /Source="Nicolas_upshifts"
                     /id="U288"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.776223776223776"
                     /psig="0.776223776223776"
                     /xcortree=1063
                     /SigmaFactorBS="caccctgatttattataaacagggaaaacatgataaagcttc
                     GGAATAtcacaagcggggctatGAATATGCTAAAGAAACAGacgatgcagactatgcc
                     g"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
     promotor_-10    411669..411687
                     /Source="Nicolas_upshift_promotors"
                     /id="U288"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.776223776223776"
                     /psig="0.776223776223776"
                     /xcortree=1063
                     /SigmaFactorBS="caccctgatttattataaacagggaaaacatgataaagcttc
                     GGAATAtcacaagcggggctatGAATATGCTAAAGAAACAGacgatgcagactatgcc
                     g"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    411809..411817
                     /Source="Nicolas_upshift_promotors"
                     /id="U289"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.753246753246753"
                     /psig="0.753246753246753"
                     /xcortree=788
                     /SigmaFactorBS="taaaaaataaaaatatgtacgctgatatAGAGGATTTagccc
                     tagaagTAGCAAAATATTACTATGAacagaaatggtttaaactgtctgcttcctactt
                     t"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    411829..411847
                     /Source="Nicolas_upshift_promotors"
                     /id="U289"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.753246753246753"
                     /psig="0.753246753246753"
                     /xcortree=788
                     /SigmaFactorBS="taaaaaataaaaatatgtacgctgatatAGAGGATTTagccc
                     tagaagTAGCAAAATATTACTATGAacagaaatggtttaaactgtctgcttcctactt
                     t"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        411841
                     /Source="Nicolas_upshifts"
                     /id="U289"
                     /multdbtbs="SigH"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.753246753246753"
                     /psig="0.753246753246753"
                     /xcortree=788
                     /SigmaFactorBS="taaaaaataaaaatatgtacgctgatatAGAGGATTTagccc
                     tagaagTAGCAAAATATTACTATGAacagaaatggtttaaactgtctgcttcctactt
                     t"
                     /listShort="phrC"
                     /GFF_Attribute="listLong"
     CDS             411931..412053
                     /gene="phrC"
                     /locus_tag="BSU_03780"
                     /old_locus_tag="BSU03780"
                     /function="16.3: Control"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10464187, 12456319, 12897006, 12950917, 16816200,
                     19202088"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10464187, 12456319,
                     12897006, 12950917, 16816200, 19202088; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted regulator of the activity of
                     phosphatase RapC and competence and sporulation
                     stimulating factor (CSF)"
                     /protein_id="NP_388260.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03780"
                     /db_xref="EnsemblGenomes-Tr:CAB12186"
                     /db_xref="GOA:P94416"
                     /db_xref="InterPro:IPR020243"
                     /db_xref="InterPro:IPR025899"
                     /db_xref="SubtiList:BG11959"
                     /db_xref="UniProtKB/Swiss-Prot:P94416"
                     /translation="MKLKSKLFVICLAAAAIFTAAGVSANAEALDFHVTERGMT*"
     gene            411931..412053
                     /gene="phrC"
                     /locus_tag="BSU_03780"
                     /old_locus_tag="BSU03780"
     downshifts      412040
                     /Source="Nicolas_upshifts"
                     /id="D164"
                     /incds=0
                     /nref=260
                     /ntot=275
                     /MaxReadThrough="3.24518"
                     /MaxDrop="7.70367"
                     /score="26.3182765"
                     /energy="-14"
                     /TU="NA"
                     /idTUdmin="U286"
                     /TUdmin=1
                     /isTUend="TRUE"
     downshifts      complement(412108)
                     /Source="Nicolas_upshifts"
                     /id="D165"
                     /incds=0
                     /nref=3
                     /ntot=64
                     /MaxReadThrough="0.60499"
                     /MaxDrop="7.4475"
                     /score="-1.25354129"
                     /energy="-15.8"
                     /TU="NA"
                     /idTUdmin="U290"
                     /TUdmin=7
                     /isTUend="TRUE"
     CDS             complement(412153..412242)
                     /gene="yczM"
                     /locus_tag="BSU_03788"
                     /old_locus_tag="BSU03788"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 20156992, 21670523;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative type I toxin"
                     /protein_id="YP_003097676.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03788"
                     /db_xref="EnsemblGenomes-Tr:CAX52547"
                     /db_xref="GOA:C0H3V0"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V0"
                     /translation="MSGYGTSFALIVVLFILLIIVGTAFVGGY*"
     gene            complement(412153..412242)
                     /gene="yczM"
                     /locus_tag="BSU_03788"
                     /old_locus_tag="BSU03788"
     downshifts      complement(412313)
                     /Source="Nicolas_upshifts"
                     /id="D166"
                     /incds=0
                     /nref=25
                     /ntot=113
                     /MaxReadThrough="7.05273"
                     /MaxDrop="3.3619"
                     /score="32.1465401"
                     /energy="-16.5"
                     /TU="U290"
                     /idTUdmin="U290"
                     /TUdmin="-198"
                     /isTUend="FALSE"
     CDS             complement(412324..412437)
                     /gene="yczN"
                     /locus_tag="BSU_03789"
                     /old_locus_tag="BSU03789"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 21670523; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore and germination protein"
                     /protein_id="YP_003097677.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03789"
                     /db_xref="EnsemblGenomes-Tr:CAX52548"
                     /db_xref="GOA:C0H3V1"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V1"
                     /translation="MSGYSNGGGYGGISSFALIVVLFILLIIVGTAFVGGF*"
     gene            complement(412324..412437)
                     /gene="yczN"
                     /locus_tag="BSU_03789"
                     /old_locus_tag="BSU03789"
     promotor_-10    complement(412458..412477)
                     /Source="Nicolas_upshift_promotors"
                     /id="U290"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1406
                     /SigmaFactorBS="attcttcattttttctcttgtccactattaTCCCTGCCAAat
                     ggatcggttcAGCATATCTTATAGTATCCTtcatagggaggtgaaaccttatgtcagg
                     a"
                     /listShort="yczN, yczM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(412469)
                     /Source="Nicolas_upshifts"
                     /id="U290"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1406
                     /SigmaFactorBS="attcttcattttttctcttgtccactattaTCCCTGCCAAat
                     ggatcggttcAGCATATCTTATAGTATCCTtcatagggaggtgaaaccttatgtcagg
                     a"
                     /listShort="yczN, yczM"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(412490..412499)
                     /Source="Nicolas_upshift_promotors"
                     /id="U290"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1406
                     /SigmaFactorBS="attcttcattttttctcttgtccactattaTCCCTGCCAAat
                     ggatcggttcAGCATATCTTATAGTATCCTtcatagggaggtgaaaccttatgtcagg
                     a"
                     /listShort="yczN, yczM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(412591..413955)
                     /gene="thrD"
                     /locus_tag="BSU_03790"
                     /old_locus_tag="BSU03790"
                     /EC_number="2.7.2.4"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2152900, 11471740, 27260660"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2152900, 11471740,
                     27260660; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase III"
                     /protein_id="NP_388261.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03790"
                     /db_xref="EnsemblGenomes-Tr:CAB12187"
                     /db_xref="GOA:P94417"
                     /db_xref="InterPro:IPR001048"
                     /db_xref="InterPro:IPR001341"
                     /db_xref="InterPro:IPR002912"
                     /db_xref="InterPro:IPR005260"
                     /db_xref="InterPro:IPR018042"
                     /db_xref="InterPro:IPR027795"
                     /db_xref="InterPro:IPR035804"
                     /db_xref="InterPro:IPR036393"
                     /db_xref="SubtiList:BG12033"
                     /db_xref="UniProtKB/Swiss-Prot:P94417"
                     /translation="MKVVKFGGSSLASGAQLDKVFHIVTSDPARKAVVVSAPGKHYAE
                     DTKVTDLLIACAEQYLATGSAPELAEAVVERYALIANELQLGQSIIEKIRDDLFTLLE
                     GDKSNPEQYLDAVKASGEDNNAKLIAAYFRYKGVKAEYVNPKDAGLFVTNEPGNAQVL
                     PESYQNLYRLRERDGLIIFPGFFGFSKDGDVITFSRSGSDITGSILANGLQADLYENF
                     TDVDAVYSVNPSFVENPKEISELTYREMRELSYAGFSVFHDEALIPAFRAGIPVQIKN
                     TNNPSAEGTRVVSKRDNTNGPVVGIASDTGFCSIYISKYLMNREIGFGRRALQILEEH
                     GLTYEHVPSGIDDMTIILRQGQMDAATERSVIKRIEEDLHADEVIVEHHLALIMVVGE
                     AMRHNVGTTARAAKALSEAQVNIEMINQGSSEVSMMFGVKEAEERKAVQALYQEFFAG
                     VLIS*"
     gene            complement(412591..413955)
                     /gene="thrD"
                     /locus_tag="BSU_03790"
                     /old_locus_tag="BSU03790"
     downshifts      complement(412599)
                     /Source="Nicolas_upshifts"
                     /id="D167"
                     /incds=0
                     /nref=23
                     /ntot=129
                     /MaxReadThrough="2.21842"
                     /MaxDrop="4.81019"
                     /score="44.9085917"
                     /energy="-15"
                     /TU="NA"
                     /idTUdmin="U291"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(412643)
                     /Source="Nicolas_upshifts"
                     /id="D168"
                     /incds=0
                     /nref=1
                     /ntot=17
                     /MaxReadThrough="5.53807"
                     /MaxDrop="2.54279"
                     /score="44.9085917"
                     /energy="-15"
                     /TU="U291"
                     /idTUdmin="U291"
                     /TUdmin="-44"
                     /isTUend="FALSE"
     promotor_-10    complement(413991..414010)
                     /Source="Nicolas_upshift_promotors"
                     /id="U291"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig="0.999000999001"
                     /xcortree=3042
                     /SigmaFactorBS="aaaaatacaaatgttctcctgagaaagaaattcccCCTTGAT
                     TtacagtactgaaagAGAGATAATAAATACTAAATttgtgtgaaaattttaaacatta
                     g"
                     /listShort="yclM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(414007)
                     /Source="Nicolas_upshifts"
                     /id="U291"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig="0.999000999001"
                     /xcortree=3042
                     /SigmaFactorBS="aaaaatacaaatgttctcctgagaaagaaattcccCCTTGAT
                     TtacagtactgaaagAGAGATAATAAATACTAAATttgtgtgaaaattttaaacatta
                     g"
                     /listShort="yclM"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(414025..414032)
                     /Source="Nicolas_upshift_promotors"
                     /id="U291"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.946053946053946"
                     /psig="0.999000999001"
                     /xcortree=3042
                     /SigmaFactorBS="aaaaatacaaatgttctcctgagaaagaaattcccCCTTGAT
                     TtacagtactgaaagAGAGATAATAAATACTAAATttgtgtgaaaattttaaacatta
                     g"
                     /listShort="yclM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    414146..414150
                     /Source="Nicolas_upshift_promotors"
                     /id="U292"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.843156843156843"
                     /psig="0.997002997002997"
                     /xcortree=2746
                     /SigmaFactorBS="aaatatggtaaacagcctaacgttttggGATGGaaaatggtt
                     agaatgATTAGTAAAATTGATAAATGactaggttaatatttttaaagaatattgacta
                     a"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    414166..414185
                     /Source="Nicolas_upshift_promotors"
                     /id="U292"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.843156843156843"
                     /psig="0.997002997002997"
                     /xcortree=2746
                     /SigmaFactorBS="aaatatggtaaacagcctaacgttttggGATGGaaaatggtt
                     agaatgATTAGTAAAATTGATAAATGactaggttaatatttttaaagaatattgacta
                     a"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        414178
                     /Source="Nicolas_upshifts"
                     /id="U292"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.843156843156843"
                     /psig="0.997002997002997"
                     /xcortree=2746
                     /SigmaFactorBS="aaatatggtaaacagcctaacgttttggGATGGaaaatggtt
                     agaatgATTAGTAAAATTGATAAATGactaggttaatatttttaaagaatattgacta
                     a"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
     promotor_-35    414209..414216
                     /Source="Nicolas_upshift_promotors"
                     /id="U293"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2099
                     /SigmaFactorBS="ataaatgactaggttaatatttttaaagaaTATTGACTaacc
                     ctataaaaaTGGTAATATGTAAATGATAAtgataatcaattactatatggccatattg
                     t"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    414230..414249
                     /Source="Nicolas_upshift_promotors"
                     /id="U293"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2099
                     /SigmaFactorBS="ataaatgactaggttaatatttttaaagaaTATTGACTaacc
                     ctataaaaaTGGTAATATGTAAATGATAAtgataatcaattactatatggccatattg
                     t"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       414239..414339
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_432271_432371"
                     /HighExp="LBGexp, Lbexp, G150, dia0, G135, H2O2, Paraq,
                     dia15, G180, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S130"
     upshifts        414239
                     /Source="Nicolas_upshifts"
                     /id="U293"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig=1
                     /xcortree=2099
                     /SigmaFactorBS="ataaatgactaggttaatatttttaaagaaTATTGACTaacc
                     ctataaaaaTGGTAATATGTAAATGATAAtgataatcaattactatatggccatattg
                     t"
                     /listShort="S130, yclN, yclO, yclP, yclQ"
                     /GFF_Attribute="listLong"
     CDS             414340..415290
                     /gene="pbtN"
                     /locus_tag="BSU_03800"
                     /old_locus_tag="BSU03800"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16850406, 19955416"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16850406, 19955416; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="petrobactin iron-siderophore ABC transporter
                     (permease)"
                     /protein_id="NP_388262.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03800"
                     /db_xref="EnsemblGenomes-Tr:CAB12188"
                     /db_xref="GOA:P94418"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12034"
                     /db_xref="UniProtKB/Swiss-Prot:P94418"
                     /translation="MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFAS
                     RLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTAGTMDWARLGILISLLLFTSASP
                     LIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
                     QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKR
                     VVNIGLIIVSLITSLVILTVGMLPFLGLIIPNIVSIYRGDNLKSSLPHTVLLGAVFVL
                     FCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA*"
     gene            414340..415290
                     /gene="pbtN"
                     /locus_tag="BSU_03800"
                     /old_locus_tag="BSU03800"
     CDS             415283..416230
                     /gene="pbtO"
                     /locus_tag="BSU_03810"
                     /old_locus_tag="BSU03810"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16850406, 19955416"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16850406, 19955416; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="petrobactin iron-siderophore ABC transporter
                     (permease)"
                     /protein_id="NP_388263.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03810"
                     /db_xref="EnsemblGenomes-Tr:CAB12189"
                     /db_xref="GOA:P94419"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12035"
                     /db_xref="UniProtKB/Swiss-Prot:P94419"
                     /translation="MRNQMKIALLVGLAIVCIGLFLFYDLGNWDYTLPRRIKKVAAIV
                     LTGGAIAFSTMIFQTITNNRILTPSILGLDSLYMLIQTGIIFLFGSANMVIMNKNINF
                     IISVLLMILFSLVLYQIMFKGEGRNIFFLLLIGIVFGTLFSSLSSFMQMLIDPNEFQV
                     VQDKMFASFNNINTDLLWLAFIIFLLTGVYVWRFTKFFDVLSLGREHAVNLGIDYDKV
                     VKQMLIVVAILVSVSTALVGPIMFLGLLVVNLAREFLKTYKHSYLIAGSVFISIIALV
                     GGQFVVEKVFTFSTTLSVIINFAGGIYFIYLLLKENKSW*"
     gene            415283..416230
                     /gene="pbtO"
                     /locus_tag="BSU_03810"
                     /old_locus_tag="BSU03810"
     CDS             416224..416982
                     /gene="pbtP"
                     /locus_tag="BSU_03820"
                     /old_locus_tag="BSU03820"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 19955416"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 19955416;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="petrobactin iron-siderophore ABC transporter
                     (ATP-binding protein)"
                     /protein_id="NP_388264.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03820"
                     /db_xref="EnsemblGenomes-Tr:CAB12190"
                     /db_xref="GOA:P94420"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12036"
                     /db_xref="UniProtKB/Swiss-Prot:P94420"
                     /translation="MVEVRNVSKQYGGKVVLEETSVTIQKGKITSFIGPNGAGKSTLL
                     SIMSRLIKKDSGEIYIDGQEIGACDSKELAKKMSILKQANQINIRLTIKDLVSFGRFP
                     YSQGRLTEEDWVHINQALSYMKLEDIQDKYLDQLSGGQCQRAFIAMVIAQDTDYIFLD
                     EPLNNLDMKHSVEIMKLLKRLVEELGKTIVIVIHDINFASVYSDYIVALKNGRIVKEG
                     PPEEMIETSVLEEIYDMTIPIQTIDNQRIGVYFS*"
     gene            416224..416982
                     /gene="pbtP"
                     /locus_tag="BSU_03820"
                     /old_locus_tag="BSU03820"
     CDS             417004..417957
                     /gene="pbtQ"
                     /locus_tag="BSU_03830"
                     /old_locus_tag="BSU03830"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 19955416, 25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 19955416,
                     25355936; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="petrobactin iron-siderophore ABC transporter
                     (binding lipoprotein)"
                     /protein_id="NP_388265.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03830"
                     /db_xref="EnsemblGenomes-Tr:CAB12191"
                     /db_xref="GOA:P94421"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="InterPro:IPR033870"
                     /db_xref="PDB:3GFV"
                     /db_xref="SubtiList:BG12037"
                     /db_xref="UniProtKB/Swiss-Prot:P94421"
                     /translation="MKKFALLFIALVTAVVISACGNQSTSSKGSDTKKEQITVKHQLD
                     KNGTKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQVLPKYLSKFKDDKYADVGS
                     LKEPDFDKVAELDPDLIIISARQSESYKEFSKIAPTIYLGVDTAKYMESFKSDAETIG
                     KIFDKEDKVKDELANIDHSIADVKKTAEKLNKNGLVIMANDGKISAFGPKSRYGLIHD
                     VFGVAPADQNIKASTHGQSVSYEYISKTNPDYLFVIDRGTAIGETSSTKQVVENDYVK
                     NVNAVKNGHVIYLDSATWYLSGGGLESMTQMIKEVKDGLEK*"
     gene            417004..417957
                     /gene="pbtQ"
                     /locus_tag="BSU_03830"
                     /old_locus_tag="BSU03830"
     downshifts      417940
                     /Source="Nicolas_upshifts"
                     /id="D169"
                     /incds=0
                     /nref=161
                     /ntot=280
                     /MaxReadThrough="3.87669"
                     /MaxDrop="7.4722"
                     /score="31.9942335"
                     /energy="-13.8"
                     /TU="U293"
                     /idTUdmin="U292"
                     /TUdmin=5
                     /isTUend="TRUE"
     CDS             complement(418004..419422)
                     /gene="ycnB"
                     /locus_tag="BSU_03840"
                     /old_locus_tag="BSU03840"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 15855514,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388266.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03840"
                     /db_xref="EnsemblGenomes-Tr:CAB12192"
                     /db_xref="GOA:P94422"
                     /db_xref="InterPro:IPR004638"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12038"
                     /db_xref="UniProtKB/Swiss-Prot:P94422"
                     /translation="MNTSIEQKPFNRSVIVGILLAGAFVAILNQTLLITALPHIMRDF
                     NVDANQAQWLTTSFMLTNGILIPITAFLIEKFTSRALLITAMSIFTAGTVVGAFAPNF
                     PVLLTARIIQAAGAGIMMPLMQTVFLTIFPIEKRGQAMGMVGLVISFAPAIGPTLSGW
                     AVEAFSWRSLFYIILPFAVIDLILASILMKNVTTLRKTQIDILSVILSTFGFGGLLYG
                     FSSVGSYGWSSSTVLISLLVGVIALLLFITRQMKLKKPMLEFRVFTFGVFSLTTLLGT
                     LVFALLIGTETILPLYTQNVRDVTAFDTGLMLLPGAVVMGFMSPIIGRIFDRVGGRGL
                     AIAGFCIIFLTSLPFMQLTDHTSLAWIVVLYTVRLLGTAMIMMPVTTAGINALPRHLI
                     PHGTAMNNTIRQVGGSIGTALLVSVMSNQAAHAGTTNVKHAALHGMNAAFIVAAVIAL
                     VGFLLSFTLKKPQRPAEQQPAR*"
     gene            complement(418004..419422)
                     /gene="ycnB"
                     /locus_tag="BSU_03840"
                     /old_locus_tag="BSU03840"
     downshifts      complement(418025)
                     /Source="Nicolas_upshifts"
                     /id="D170"
                     /incds=0
                     /nref=8
                     /ntot=150
                     /MaxReadThrough="2.00954"
                     /MaxDrop="5.13029"
                     /score="17.5501827"
                     /energy="-13.8"
                     /TU="NA"
                     /idTUdmin="U294"
                     /TUdmin="-14"
                     /isTUend="TRUE"
     CDS             complement(419442..420320)
                     /gene="ycnC"
                     /locus_tag="BSU_03850"
                     /old_locus_tag="BSU03850"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (TetR/AcrR
                     family)"
                     /protein_id="NP_388267.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03850"
                     /db_xref="EnsemblGenomes-Tr:CAB12193"
                     /db_xref="GOA:P94423"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="SubtiList:BG12039"
                     /db_xref="UniProtKB/Swiss-Prot:P94423"
                     /translation="MLDKKTDILLAARKLFSEKDFTSVSMQAIAEECKMSKASIYKLF
                     QSKEDLLLELLSFNQKQMVAAASRLQENTALTPEERLTQKVKMELEGFRRNQQFFNML
                     TYGNPKLHNDRVKQHIHQTRSTIICWHRDSLIQAYGETILPFVWDLVIILHGMMREFL
                     MLIKIEEKPLELDPIAEFIISTLNQIIKNRETRQSLLPPEAIELYIHSASSYKPKDKS
                     VLLSESLKELHKGISSLSAADYDVDELTSAAAMLEEEAKKEEPRAFLLKSLIGYLEQT
                     GVLTQPVSMLKTLLIT*"
     gene            complement(419442..420320)
                     /gene="ycnC"
                     /locus_tag="BSU_03850"
                     /old_locus_tag="BSU03850"
     S_feature       complement(420321..420387)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_438353_438419_c"
                     /HighExp="dia15, H2O2, Diami, Paraq, Oxctl, Cold, G180,
                     Salt, BMM, GM 120"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S131"
     promotor_-10    complement(420386..420405)
                     /Source="Nicolas_upshift_promotors"
                     /id="U294"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.373626373626374"
                     /psig="0.999000999001"
                     /xcortree=2489
                     /SigmaFactorBS="gcaggcctttcatttacccggttaaaatcCATTGACttctat
                     tttgtttaTCTGGTAAAATTTTTTCATTgttactcattggttttctgtgaaccaatgg
                     g"
                     /listShort="S131, ycnC, ycnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(420395)
                     /Source="Nicolas_upshifts"
                     /id="U294"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.373626373626374"
                     /psig="0.999000999001"
                     /xcortree=2489
                     /SigmaFactorBS="gcaggcctttcatttacccggttaaaatcCATTGACttctat
                     tttgtttaTCTGGTAAAATTTTTTCATTgttactcattggttttctgtgaaccaatgg
                     g"
                     /listShort="S131, ycnC, ycnB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(420420..420426)
                     /Source="Nicolas_upshift_promotors"
                     /id="U294"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.373626373626374"
                     /psig="0.999000999001"
                     /xcortree=2489
                     /SigmaFactorBS="gcaggcctttcatttacccggttaaaatcCATTGACttctat
                     tttgtttaTCTGGTAAAATTTTTTCATTgttactcattggttttctgtgaaccaatgg
                     g"
                     /listShort="S131, ycnC, ycnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(420484..421233)
                     /gene="nfrAB"
                     /locus_tag="BSU_03860"
                     /old_locus_tag="BSU03860"
                     /EC_number="1.5.1.39"
                     /EC_number="1.6.99.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16229462, 9836433, 20862523"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16229462, 9836433,
                     20862523; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-FMN oxidoreductase (nitroreductase)"
                     /protein_id="NP_388268.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03860"
                     /db_xref="EnsemblGenomes-Tr:CAB12194"
                     /db_xref="GOA:P94424"
                     /db_xref="InterPro:IPR000415"
                     /db_xref="InterPro:IPR016446"
                     /db_xref="InterPro:IPR029479"
                     /db_xref="PDB:1ZCH"
                     /db_xref="SubtiList:BG12040"
                     /db_xref="UniProtKB/Swiss-Prot:P94424"
                     /translation="MNEVIKSLTDHRSIRSYTDEPVAQEQLDQIIEAVQSAPSSINGQ
                     QVTVITVQDKERKKKISELAGGQPWIDQAPVFLLFCADFNRAKIALEDLHDFKMEITN
                     GLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELPKYVFPLSG
                     LVIGHPADRSAKKPRLPQEAVNHQETYLNQDELTSHIQAYDEQMSEYMNKRTNGKETR
                     NWSQSIASYYERLYYPHIREMLEKQGFKVEK*"
     gene            complement(420484..421233)
                     /gene="nfrAB"
                     /locus_tag="BSU_03860"
                     /old_locus_tag="BSU03860"
     downshifts      complement(420497)
                     /Source="Nicolas_upshifts"
                     /id="D171"
                     /incds=0
                     /nref=136
                     /ntot=243
                     /MaxReadThrough="2.08639"
                     /MaxDrop="5.10745"
                     /score="11.1864402"
                     /energy="-18.6"
                     /TU="NA"
                     /idTUdmin="U296"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(421250..421537)
                     /gene="ycnE"
                     /locus_tag="BSU_03870"
                     /old_locus_tag="BSU03870"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17274596, 21454635;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative AI-2 degrading enzyme"
                     /protein_id="NP_388269.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03870"
                     /db_xref="EnsemblGenomes-Tr:CAB12195"
                     /db_xref="GOA:P94425"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="SubtiList:BG12041"
                     /db_xref="UniProtKB/Swiss-Prot:P94425"
                     /translation="MIVLQAYIKVKPEKREEFLSEAQSLVQHSRAEEGNAQYDLFEKV
                     GEENTFVMLEKWKDEAAMKFHNETAHFQGFVAKGKELLSAPLDVVRTELSE*"
     gene            complement(421250..421537)
                     /gene="ycnE"
                     /locus_tag="BSU_03870"
                     /old_locus_tag="BSU03870"
     promotor_-35    421503..421510
                     /Source="Nicolas_upshift_promotors"
                     /id="U295"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig="0.993006993006993"
                     /xcortree=1982
                     /SigmaFactorBS="aaaattcctcgcgtttttctGGTTTTACtttgatgtaagctT
                     GTAATACGATCATGTAAATctcctccgtcgttatgcgaatttattgttcgaatttcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    421524..421543
                     /Source="Nicolas_upshift_promotors"
                     /id="U295"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig="0.993006993006993"
                     /xcortree=1982
                     /SigmaFactorBS="aaaattcctcgcgtttttctGGTTTTACtttgatgtaagctT
                     GTAATACGATCATGTAAATctcctccgtcgttatgcgaatttattgttcgaatttcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        421543
                     /Source="Nicolas_upshifts"
                     /id="U295"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig="0.993006993006993"
                     /xcortree=1982
                     /SigmaFactorBS="aaaattcctcgcgtttttctGGTTTTACtttgatgtaagctT
                     GTAATACGATCATGTAAATctcctccgtcgttatgcgaatttattgttcgaatttcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(421581..421600)
                     /Source="Nicolas_upshift_promotors"
                     /id="U296"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig=1
                     /xcortree=1945
                     /SigmaFactorBS="acaattagaatgacaattttactatataagggttttTCCTTT
                     ACctcatttagaataCATGTTACATTTAGTTCGATgaaattcgaacaataaattcgca
                     t"
                     /listShort="ycnE, ycnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(421597)
                     /Source="Nicolas_upshifts"
                     /id="U296"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig=1
                     /xcortree=1945
                     /SigmaFactorBS="acaattagaatgacaattttactatataagggttttTCCTTT
                     ACctcatttagaataCATGTTACATTTAGTTCGATgaaattcgaacaataaattcgca
                     t"
                     /listShort="ycnE, ycnD"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(421614..421621)
                     /Source="Nicolas_upshift_promotors"
                     /id="U296"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig=1
                     /xcortree=1945
                     /SigmaFactorBS="acaattagaatgacaattttactatataagggttttTCCTTT
                     ACctcatttagaataCATGTTACATTTAGTTCGATgaaattcgaacaataaattcgca
                     t"
                     /listShort="ycnE, ycnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    421642..421649
                     /Source="Nicolas_upshift_promotors"
                     /id="U297"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.614385614385614"
                     /psig="0.955044955044955"
                     /xcortree=576
                     /SigmaFactorBS="taacatgtattctaaatgaggtaaaggaaaaacccttatata
                     gtaaaaTTGTCATTctaattgttgTATGATACATTTGTGTCATGaacattccaaacca
                     t"
                     /listShort="yczG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        421654
                     /Source="Nicolas_upshifts"
                     /id="U297"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.614385614385614"
                     /psig="0.955044955044955"
                     /xcortree=576
                     /SigmaFactorBS="taacatgtattctaaatgaggtaaaggaaaaacccttatata
                     gtaaaaTTGTCATTctaattgttgTATGATACATTTGTGTCATGaacattccaaacca
                     t"
                     /listShort="yczG"
                     /GFF_Attribute="listLong"
     promotor_-10    421660..421679
                     /Source="Nicolas_upshift_promotors"
                     /id="U297"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.614385614385614"
                     /psig="0.955044955044955"
                     /xcortree=576
                     /SigmaFactorBS="taacatgtattctaaatgaggtaaaggaaaaacccttatata
                     gtaaaaTTGTCATTctaattgttgTATGATACATTTGTGTCATGaacattccaaacca
                     t"
                     /listShort="yczG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             421677..421991
                     /gene="yczG"
                     /locus_tag="BSU_03880"
                     /old_locus_tag="BSU03880"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (ArsR
                     family)"
                     /protein_id="NP_388270.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03880"
                     /db_xref="EnsemblGenomes-Tr:CAB12196"
                     /db_xref="GOA:O31480"
                     /db_xref="InterPro:IPR001845"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12781"
                     /db_xref="UniProtKB/Swiss-Prot:O31480"
                     /translation="MNIPNHPETETLQLTKVLHALSDPLRLELVKQLAEAKEKTCSTC
                     ADVQVAKSTLSHHFKVLRESGIAQVRIEGKRRYYSLRAEDLEKAFPGLLEAVLNVDQD
                     RW*"
     gene            421677..421991
                     /gene="yczG"
                     /locus_tag="BSU_03880"
                     /old_locus_tag="BSU03880"
     downshifts      421983
                     /Source="Nicolas_upshifts"
                     /id="D172"
                     /incds=0
                     /nref=173
                     /ntot=262
                     /MaxReadThrough="0.52252"
                     /MaxDrop="5.32898"
                     /score="20.7855667"
                     /energy="-7.4"
                     /TU="NA"
                     /idTUdmin="U297"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(421993..423432)
                     /gene="gabR"
                     /locus_tag="BSU_03890"
                     /old_locus_tag="BSU03890"
                     /experiment="publication(s) with functional evidences,
                     PMID:15223311, 24127574, 25388514, 27640111, 28348215,
                     28412355"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15223311, 24127574,
                     25388514, 27640111, 28348215, 28412355; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (GntR/MocR family)
                     with PLP binding site (GabR-GABA-PLP aldimine)"
                     /protein_id="NP_388271.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03890"
                     /db_xref="EnsemblGenomes-Tr:CAB12197"
                     /db_xref="GOA:P94426"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:4MGR"
                     /db_xref="PDB:4N0B"
                     /db_xref="PDB:4TV7"
                     /db_xref="PDB:5T4J"
                     /db_xref="PDB:5T4K"
                     /db_xref="PDB:5X03"
                     /db_xref="SubtiList:BG12042"
                     /db_xref="UniProtKB/Swiss-Prot:P94426"
                     /translation="MDITITLDRSEQADYIYQQIYQKLKKEILSRNLLPHSKVPSKRE
                     LAENLKVSVNSVNSAYQQLLAEGYLYAIERKGFFVEELDMFSAEEHPPFALPDDLKEI
                     HIDQSDWISFSHMSSDTDHFPIKSWFRCEQKAASRSYRTLGDMSHPQGIYEVRAAITR
                     LISLTRGVKCRPEQMIIGAGTQVLMQLLTELLPKEAVYAMEEPGYRRMYQLLKNAGKQ
                     VKTIMLDEKGMSIAEITRQQPDVLVTTPSHQFPSGTIMPVSRRIQLLNWAAEEPRRYI
                     IEDDYDSEFTYDVDSIPALQSLDRFQNVIYMGTFSKSLLPGLRISYMVLPPELLRAYK
                     QRGYDLQTCSSLTQLTLQEFIESGEYQKHIKKMKQHYKEKRERLITALEAEFSGEVTV
                     KGANAGLHFVTEFDTRRTEQDILSHAAGLQLEIFGMSRFNLKENKRQTGRPALIIGFA
                     RLKEEDIQEGVQRLFKAVYGHKKIPVTGD*"
     gene            complement(421993..423432)
                     /gene="gabR"
                     /locus_tag="BSU_03890"
                     /old_locus_tag="BSU03890"
     promotor_-10    complement(422317..422328)
                     /Source="Nicolas_upshift_promotors"
                     /id="U298"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=919
                     /SigmaFactorBS="cctgcaggaatttatcgagtctggtgaatatcagaAGCATAT
                     aaaaaaaatgaagCAGCATTATAAAgaaaagagagaacgcctgatcaccgctttagaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(422323)
                     /Source="Nicolas_upshifts"
                     /id="U298"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=919
                     /SigmaFactorBS="cctgcaggaatttatcgagtctggtgaatatcagaAGCATAT
                     aaaaaaaatgaagCAGCATTATAAAgaaaagagagaacgcctgatcaccgctttagaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(422342..422348)
                     /Source="Nicolas_upshift_promotors"
                     /id="U298"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=919
                     /SigmaFactorBS="cctgcaggaatttatcgagtctggtgaatatcagaAGCATAT
                     aaaaaaaatgaagCAGCATTATAAAgaaaagagagaacgcctgatcaccgctttagaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(423475..423494)
                     /Source="Nicolas_upshift_promotors"
                     /id="U299"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.728271728271728"
                     /psig="0.999000999001"
                     /xcortree=2992
                     /SigmaFactorBS="tcatgtgaatatccccctgtcggtattttcTTATCATTctga
                     cttctcTTTGGTATGATGAAAAGTACcaattataactttttgatggtatcagaaggag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    423476..423483
                     /Source="Nicolas_upshift_promotors"
                     /id="U300"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig="0.942057942057942"
                     /xcortree=377
                     /SigmaFactorBS="ttctccttctgataccatcaaaaagttataattggTACTTTT
                     CatcataccaaagaGAAGTCAGAATGATAAGAAAataccgacagggggatattcacat
                     g"
                     /listShort="gabT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(423482)
                     /Source="Nicolas_upshifts"
                     /id="U299"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.728271728271728"
                     /psig="0.999000999001"
                     /xcortree=2992
                     /SigmaFactorBS="tcatgtgaatatccccctgtcggtattttcTTATCATTctga
                     cttctcTTTGGTATGATGAAAAGTACcaattataactttttgatggtatcagaaggag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    423497..423516
                     /Source="Nicolas_upshift_promotors"
                     /id="U300"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig="0.942057942057942"
                     /xcortree=377
                     /SigmaFactorBS="ttctccttctgataccatcaaaaagttataattggTACTTTT
                     CatcataccaaagaGAAGTCAGAATGATAAGAAAataccgacagggggatattcacat
                     g"
                     /listShort="gabT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        423501
                     /Source="Nicolas_upshifts"
                     /id="U300"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig="0.942057942057942"
                     /xcortree=377
                     /SigmaFactorBS="ttctccttctgataccatcaaaaagttataattggTACTTTT
                     CatcataccaaagaGAAGTCAGAATGATAAGAAAataccgacagggggatattcacat
                     g"
                     /listShort="gabT"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(423505..423512)
                     /Source="Nicolas_upshift_promotors"
                     /id="U299"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.728271728271728"
                     /psig="0.999000999001"
                     /xcortree=2992
                     /SigmaFactorBS="tcatgtgaatatccccctgtcggtattttcTTATCATTctga
                     cttctcTTTGGTATGATGAAAAGTACcaattataactttttgatggtatcagaaggag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             423539..424849
                     /gene="gabT"
                     /locus_tag="BSU_03900"
                     /old_locus_tag="BSU03900"
                     /EC_number="2.6.1.19"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:4590473, 12123465, 12354229, 15590624, 9723923,
                     19854901, 24529384"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 4590473, 12123465,
                     12354229, 15590624, 9723923, 19854901, 24529384; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate aminotransferase"
                     /protein_id="NP_388272.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03900"
                     /db_xref="EnsemblGenomes-Tr:CAB12198"
                     /db_xref="GOA:P94427"
                     /db_xref="InterPro:IPR004632"
                     /db_xref="InterPro:IPR005814"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG12043"
                     /db_xref="UniProtKB/Swiss-Prot:P94427"
                     /translation="MSQTTASITTAQWQQKRDQFVSKGVSNGNRSLAVKGEGAELYDL
                     DGRRFIDFAGAIGTLNVGHSHPKVVEAVKRQAEELIHPGFNVMMYPTYIELAEKLCGI
                     APGSHEKKAIFLNSGAEAVENAVKIARKYTKRQGVVSFTRGFHGRTNMTMSMTSKVKP
                     YKFGFGPFAPEVYQAPFPYYYQKPAGMSDESYDDMVIQAFNDFFIASVAPETVACVVM
                     EPVQGEGGFIIPSKRFVQHVASFCKEHGIVFVADEIQTGFARTGTYFAIEHFDVVPDL
                     ITVSKSLAAGLPLSGVIGRAEMLDAAAPGELGGTYAGSPLGCAAALAVLDIIEEEGLN
                     ERSEEIGKIIEDKAYEWKQEFPFIGDIRRLGAMAAIEIVKDPDTREPDKTKAAAIAAY
                     ANQNGLLLLTAGINGNIIRFLTPLVISDSLLNEGLSILEAGLRA*"
     gene            423539..424849
                     /gene="gabT"
                     /locus_tag="BSU_03900"
                     /old_locus_tag="BSU03900"
     promotor_-35    424727..424733
                     /Source="Nicolas_upshift_promotors"
                     /id="U301"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=250
                     /SigmaFactorBS="cagcagcgatcgcggcctatgcgaatcaaaacGGATTACttt
                     tgctgacagcGGGAATTAACGGTAATATCatccgctttttgacaccgctcgtcatctc
                     a"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    424747..424765
                     /Source="Nicolas_upshift_promotors"
                     /id="U301"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=250
                     /SigmaFactorBS="cagcagcgatcgcggcctatgcgaatcaaaacGGATTACttt
                     tgctgacagcGGGAATTAACGGTAATATCatccgctttttgacaccgctcgtcatctc
                     a"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        424755
                     /Source="Nicolas_upshifts"
                     /id="U301"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=250
                     /SigmaFactorBS="cagcagcgatcgcggcctatgcgaatcaaaacGGATTACttt
                     tgctgacagcGGGAATTAACGGTAATATCatccgctttttgacaccgctcgtcatctc
                     a"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
     promotor_-35    424851..424858
                     /Source="Nicolas_upshift_promotors"
                     /id="U302"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.998001998001998"
                     /xcortree=2034
                     /SigmaFactorBS="catcttggaggcgggcctgcgagcttaatCATTGGAAagaaa
                     atggccgggTCTGCTATCATTTTAAGTAAtcatgaaaagaaaggaatgttcaatatgc
                     c"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    424873..424892
                     /Source="Nicolas_upshift_promotors"
                     /id="U302"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.998001998001998"
                     /xcortree=2034
                     /SigmaFactorBS="catcttggaggcgggcctgcgagcttaatCATTGGAAagaaa
                     atggccgggTCTGCTATCATTTTAAGTAAtcatgaaaagaaaggaatgttcaatatgc
                     c"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        424882
                     /Source="Nicolas_upshifts"
                     /id="U302"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.998001998001998"
                     /xcortree=2034
                     /SigmaFactorBS="catcttggaggcgggcctgcgagcttaatCATTGGAAagaaa
                     atggccgggTCTGCTATCATTTTAAGTAAtcatgaaaagaaaggaatgttcaatatgc
                     c"
                     /listShort="gabD"
                     /GFF_Attribute="listLong"
     CDS             424918..426306
                     /gene="gabD"
                     /locus_tag="BSU_03910"
                     /old_locus_tag="BSU03910"
                     /EC_number="1.2.1.24"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15590624, 9723923, 12123465, 24529384,
                     24809290, 25911692"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15590624,
                     9723923, 12123465, 24529384, 24809290, 25911692; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate-semialdehyde dehydrogenase"
                     /protein_id="NP_388273.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03910"
                     /db_xref="EnsemblGenomes-Tr:CAB12199"
                     /db_xref="GOA:P94428"
                     /db_xref="InterPro:IPR010102"
                     /db_xref="InterPro:IPR012394"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016160"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="SubtiList:BG12044"
                     /db_xref="UniProtKB/Swiss-Prot:P94428"
                     /translation="MPDQLTVYNPATGEEIKTIPQQSATEVEEAIERSHQAFKTWSKT
                     SANERTSLLKKWYELIVEHKEELADLITKENGKPYQEAVGEVLYGAGYIEWFAEEAKR
                     VYGRTVPAPTTGKRIVVTRQPVGPVAAITPWNFPNAMITRKAAPALAAGCTFIIKPAP
                     DTPLSAYELARLAYEAGIPKDVLQVVIGDGEEIGNVFTSSPKIRKITFTGSTPVGKIL
                     MKNSADTVKHVSMELGGHAPLIVDEDADIDLAVEQAMASKYRNAGQTCVCANRLIVHE
                     SIKDEFAAKLSEQVSKLKVGNGLEEGVNVGPIINKRGFEKIVSQIDDAVEKGAKVIAG
                     GTYDRNDDKGCYFVNPTVLTDVDTSMNIMHEETFGPVAPIVTFSDIDEAIQLANDTPY
                     GLAAYFFTENYRRGIYISENLEYGIIGWNDGGPSAVQAPFGGMKESGIGREGGSEGIE
                     PYLETKYLSIGL*"
     gene            424918..426306
                     /gene="gabD"
                     /locus_tag="BSU_03910"
                     /old_locus_tag="BSU03910"
     downshifts      426314
                     /Source="Nicolas_upshifts"
                     /id="D173"
                     /incds=0
                     /nref=107
                     /ntot=240
                     /MaxReadThrough="0.105510000000001"
                     /MaxDrop="6.52053"
                     /score="38.677658"
                     /energy="-19.9"
                     /TU="NA"
                     /idTUdmin="U301"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     promotor_-35    426364..426370
                     /Source="Nicolas_upshift_promotors"
                     /id="U303"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=885
                     /SigmaFactorBS="gagctgccggattttccggcagctctttttgtgttccggCGA
                     ATAAtcacaacaattccAGCCAAAATAACagcaaatacattttgaaagaaggttcccc
                     a"
                     /listShort="glcU, gdh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    426384..426395
                     /Source="Nicolas_upshift_promotors"
                     /id="U303"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=885
                     /SigmaFactorBS="gagctgccggattttccggcagctctttttgtgttccggCGA
                     ATAAtcacaacaattccAGCCAAAATAACagcaaatacattttgaaagaaggttcccc
                     a"
                     /listShort="glcU, gdh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        426385
                     /Source="Nicolas_upshifts"
                     /id="U303"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=885
                     /SigmaFactorBS="gagctgccggattttccggcagctctttttgtgttccggCGA
                     ATAAtcacaacaattccAGCCAAAATAACagcaaatacattttgaaagaaggttcccc
                     a"
                     /listShort="glcU, gdh"
                     /GFF_Attribute="listLong"
     CDS             426429..427292
                     /gene="glcU"
                     /locus_tag="BSU_03920"
                     /old_locus_tag="BSU03920"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10438764, 15849754,
                     16850406, 19054326, 21564334, 27329749; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake protein"
                     /protein_id="NP_388274.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03920"
                     /db_xref="EnsemblGenomes-Tr:CAB12200"
                     /db_xref="GOA:P40420"
                     /db_xref="InterPro:IPR010651"
                     /db_xref="SubtiList:BG11066"
                     /db_xref="UniProtKB/Swiss-Prot:P40420"
                     /translation="MDLLLALLPALFWGSIVLFNVKLGGGPYSQTLGTTIGALIVSIV
                     IYFFVQPVLSLRIFIVGIVSGLFWSLGQANQLKSIQLMGVSKTMPISTGMQLVSTSLF
                     GVIVFREWSTPIAITLGVLALIFIIVGIILTSLEDKNDKKEGEPSNLKKGILILLVST
                     LGYLVYVVVARLFNVSGWSALLPQAIGMVVGGLVLTYRHKPFNKYAIRNILPGLIWAG
                     GNMFLFISQPRVGVATSFSLSQMGIVISTLGGIFILREKKTKRQLIAIAIGIILIIAA
                     AVFLGIAKTNS*"
     gene            426429..427292
                     /gene="glcU"
                     /locus_tag="BSU_03920"
                     /old_locus_tag="BSU03920"
     CDS             427312..428097
                     /gene="gdh"
                     /locus_tag="BSU_03930"
                     /old_locus_tag="BSU03930"
                     /EC_number="1.1.1.47"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2493633, 3141376, 6438057, 16912926"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2493633, 3141376,
                     6438057, 16912926; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="forespore glucose 1-dehydrogenase"
                     /protein_id="NP_388275.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03930"
                     /db_xref="EnsemblGenomes-Tr:CAB12201"
                     /db_xref="GOA:P12310"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG10545"
                     /db_xref="UniProtKB/Swiss-Prot:P12310"
                     /translation="MYPDLKGKVVAITGAASGLGKAMAIRFGKEQAKVVINYYSNKQD
                     PNEVKEEVIKAGGEAVVVQGDVTKEEDVKNIVQTAIKEFGTLDIMINNAGLENPVPSH
                     EMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAA
                     SKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPKQKADVESMIPMGYI
                     GEPEEIAAVAAWLASKEASYVTGITLFADGGMTQYPSFQAGRG*"
     gene            427312..428097
                     /gene="gdh"
                     /locus_tag="BSU_03930"
                     /old_locus_tag="BSU03930"
     misc_feature    427417..427436
                     /Source="Nicolas_upshift_promotors"
                     /id="U304"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig="0.732267732267732"
                     /xcortree=1477
                     /SigmaFactorBS="gcttcagggctcggaaaggcgatggccattcgcttcggcaag
                     gagcaggcaaaagtggttATCAACTATTATAGTAATAAacaagatccgaacgaggtaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        427417
                     /Source="Nicolas_upshifts"
                     /id="U304"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig="0.732267732267732"
                     /xcortree=1477
                     /SigmaFactorBS="gcttcagggctcggaaaggcgatggccattcgcttcggcaag
                     gagcaggcaaaagtggttATCAACTATTATAGTAATAAacaagatccgaacgaggtaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      427505
                     /Source="Nicolas_upshifts"
                     /id="D174"
                     /incds=1
                     /nref=1
                     /ntot=3
                     /MaxReadThrough="6.44884"
                     /MaxDrop="2.47712"
                     /score="-5.4075438"
                     /energy="-11.7"
                     /TU="U303"
                     /idTUdmin="U301"
                     /TUdmin=1188
                     /isTUend="FALSE"
     downshifts      428099
                     /Source="Nicolas_upshifts"
                     /id="D175"
                     /incds=0
                     /nref=4
                     /ntot=40
                     /MaxReadThrough="2.7861"
                     /MaxDrop="4.2307"
                     /score="-5.4075438"
                     /energy="-11.7"
                     /TU="U303"
                     /idTUdmin="U303"
                     /TUdmin="-836"
                     /isTUend="FALSE"
     CDS             complement(428142..428756)
                     /gene="cutI"
                     /locus_tag="BSU_03940"
                     /old_locus_tag="BSU03940"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 19168619, 22904286,
                     27010565, 26822828; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein involved in copper
                     intake"
                     /protein_id="NP_388276.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03940"
                     /db_xref="EnsemblGenomes-Tr:CAB12202"
                     /db_xref="GOA:P94431"
                     /db_xref="InterPro:IPR012533"
                     /db_xref="SubtiList:BG12045"
                     /db_xref="UniProtKB/Swiss-Prot:P94431"
                     /translation="MLKKIALTLCPAIVGSLLFFTAPASAHVSVKPAESAAGSWETYT
                     MKVPSEKNLPTTKVVLKMPKDVEFQQYEPIPGWKVSTQKHDDKSVSVTWEATDGGIQE
                     GQFQQFTFVAKNPDKAEEAAWDAYQYYKDGSIVEWTGDEDADTPHSITNITSAKQVTD
                     EHGATKTEDDSENSGSSALDITAMVLSAAAIILSVAALVKKKRA*"
     gene            complement(428142..428756)
                     /gene="cutI"
                     /locus_tag="BSU_03940"
                     /old_locus_tag="BSU03940"
     downshifts      complement(428153)
                     /Source="Nicolas_upshifts"
                     /id="D176"
                     /incds=0
                     /nref=95
                     /ntot=219
                     /MaxReadThrough="0.879290000000001"
                     /MaxDrop="6.67627"
                     /score="21.5633403"
                     /energy="-16"
                     /TU="NA"
                     /idTUdmin="U305"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(428769..430394)
                     /gene="cutJ"
                     /locus_tag="BSU_03950"
                     /old_locus_tag="BSU03950"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15101989, 15849754, 16850406, 19168619, 22904286,
                     23012364"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15101989, 15849754,
                     16850406, 19168619, 22904286, 23012364; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="copper import permease subunit"
                     /protein_id="NP_388277.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03950"
                     /db_xref="EnsemblGenomes-Tr:CAB12203"
                     /db_xref="GOA:C0SP95"
                     /db_xref="InterPro:IPR007348"
                     /db_xref="InterPro:IPR008457"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR014756"
                     /db_xref="InterPro:IPR032693"
                     /db_xref="InterPro:IPR032694"
                     /db_xref="SubtiList:BG12046"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP95"
                     /translation="MKRNRWWIILLLFLVFLPKTSFAHAYIVKSSPGENSELKSAPAQ
                     VEIEFNEPVEEGFHYIKVYNSNGDRVDTDKTEIKKDNHHIMTVKLKKNLPKDVYRAEW
                     NAVSADGHPVSGVIPFSIGKADGGFSSQKAADSALNPGTAADRAILYTALSLFIGTVF
                     FHLFWYKGKSEQLVKRTRRILTGSIAALGLALLLQLPIQTKANAGGGWGSAFQPGYIR
                     ETLFETAGGSIWIIQAALFVLLALSVIPAIRKNRFSSFGYWTAPLIFFFGLLLAKAFT
                     GHAAVVEEKTVGILMDFLHLTSASIWVGGIAALVLLLSKEWRQPDKTLAWETVRRFSP
                     WALTAVGVILFSGLLNGFFIIRSMDSLFHTAYGQALLVKSGLFVFMLVLGAIHFLLTR
                     KQRRTGISRTLKAEWAIGIAVLITAAVFTSLPSPPEPAPEPFYQTKAIENGQSVSLSI
                     SPNQPGKNVFELRVTDHNGDPVKNIQQITLTVYKTGLSGSENKSTFTLKEKTKGVFQD
                     QNLSINEKGNWKIKVHGLTGDFNEINIMFTKTN*"
     gene            complement(428769..430394)
                     /gene="cutJ"
                     /locus_tag="BSU_03950"
                     /old_locus_tag="BSU03950"
     CDS             complement(430429..431001)
                     /gene="cutR"
                     /locus_tag="BSU_03960"
                     /old_locus_tag="BSU03960"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15101989, 22904286, 23012364"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15101989, 22904286,
                     23012364; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of copper intake
                     (CutR-Cu(+))"
                     /protein_id="NP_388278.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03960"
                     /db_xref="EnsemblGenomes-Tr:CAB12204"
                     /db_xref="GOA:P94433"
                     /db_xref="InterPro:IPR001034"
                     /db_xref="InterPro:IPR008719"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12047"
                     /db_xref="UniProtKB/Swiss-Prot:P94433"
                     /translation="MLPINRQQHILKWLKEEGSLRISDISARFGVSEMTVYRDVNQLV
                     QSNQVIKTAGGITLPVRTPQTDHMCSYCLKPVNQAHSVQLITVNQDIEQLCCAHCAFL
                     RYADKTEEVSHLICRDFLLQTTVSAGSAYFVVNAELNLHCCQPQAIPFATLDHAERFQ
                     KGFGGAVCTFDQALEDMLQDRKKRCTCTKK*"
     gene            complement(430429..431001)
                     /gene="cutR"
                     /locus_tag="BSU_03960"
                     /old_locus_tag="BSU03960"
     promotor_-10    complement(431023..431042)
                     /Source="Nicolas_upshift_promotors"
                     /id="U305"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.999000999001"
                     /xcortree=1591
                     /SigmaFactorBS="tgttcaacacattttcacattttttatcatccactTACTTGT
                     CtccgtctctaaaaTCCTCTACGCTTAAATAGATcttaatgaagagggtgtatgaatg
                     c"
                     /listShort="ycnK, ycnJ, ycnI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(431038)
                     /Source="Nicolas_upshifts"
                     /id="U305"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.999000999001"
                     /xcortree=1591
                     /SigmaFactorBS="tgttcaacacattttcacattttttatcatccactTACTTGT
                     CtccgtctctaaaaTCCTCTACGCTTAAATAGATcttaatgaagagggtgtatgaatg
                     c"
                     /listShort="ycnK, ycnJ, ycnI"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(431056..431063)
                     /Source="Nicolas_upshift_promotors"
                     /id="U305"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.999000999001"
                     /xcortree=1591
                     /SigmaFactorBS="tgttcaacacattttcacattttttatcatccactTACTTGT
                     CtccgtctctaaaaTCCTCTACGCTTAAATAGATcttaatgaagagggtgtatgaatg
                     c"
                     /listShort="ycnK, ycnJ, ycnI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    431123..431142
                     /Source="Nicolas_upshift_promotors"
                     /id="U306"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.764235764235764"
                     /psig="0.999000999001"
                     /xcortree=2504
                     /SigmaFactorBS="aaaaatgtgaaaatgtgttgaacagcaacaaaacgaaacaga
                     agggacTCTGGTATAATAGACAGATGgaatagaaagtgaggaataccctatgaaagaa
                     a"
                     /listShort="ycnL"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        431135
                     /Source="Nicolas_upshifts"
                     /id="U306"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.764235764235764"
                     /psig="0.999000999001"
                     /xcortree=2504
                     /SigmaFactorBS="aaaaatgtgaaaatgtgttgaacagcaacaaaacgaaacaga
                     agggacTCTGGTATAATAGACAGATGgaatagaaagtgaggaataccctatgaaagaa
                     a"
                     /listShort="ycnL"
                     /GFF_Attribute="listLong"
     CDS             431166..431519
                     /gene="ycnL"
                     /locus_tag="BSU_03970"
                     /old_locus_tag="BSU03970"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     18307109, 27010565; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative reductase or disulfide isomerase"
                     /protein_id="NP_388279.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03970"
                     /db_xref="EnsemblGenomes-Tr:CAB12205"
                     /db_xref="GOA:P94434"
                     /db_xref="SubtiList:BG12048"
                     /db_xref="UniProtKB/Swiss-Prot:P94434"
                     /translation="MKETPCPNCGKPLTGDMVRSSNVPCQFRCGHCRERLYEYKVSAP
                     IMLVSLAAIVLLIYLLMLLRNAAGSVLPAVQHVPMAVFALVCAYPVFIVSERMIAKYV
                     IQNGNIIYRGKRKGS*"
     gene            431166..431519
                     /gene="ycnL"
                     /locus_tag="BSU_03970"
                     /old_locus_tag="BSU03970"
     downshifts      431490
                     /Source="Nicolas_upshifts"
                     /id="D177"
                     /incds=0
                     /nref=136
                     /ntot=248
                     /MaxReadThrough="0.860829999999999"
                     /MaxDrop="6.25982"
                     /score="38.4886131"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U306"
                     /TUdmin="-19"
                     /isTUend="TRUE"
     promotor_-35    431583..431590
                     /Source="Nicolas_upshift_promotors"
                     /id="U307"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1546
                     /SigmaFactorBS="tgtcacagtcatgtgccaaagtcctctttactttCAATTGTA
                     tagggactgtaagCGTTTTAACATAGAGTCAAAgggaagcatcattctctgaacatat
                     t"
                     /listShort="S132, mtlA, mtlF, mtlD, ycsA, sipU, S133"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    431604..431623
                     /Source="Nicolas_upshift_promotors"
                     /id="U307"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1546
                     /SigmaFactorBS="tgtcacagtcatgtgccaaagtcctctttactttCAATTGTA
                     tagggactgtaagCGTTTTAACATAGAGTCAAAgggaagcatcattctctgaacatat
                     t"
                     /listShort="S132, mtlA, mtlF, mtlD, ycsA, sipU, S133"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        431609
                     /Source="Nicolas_upshifts"
                     /id="U307"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig=1
                     /xcortree=1546
                     /SigmaFactorBS="tgtcacagtcatgtgccaaagtcctctttactttCAATTGTA
                     tagggactgtaagCGTTTTAACATAGAGTCAAAgggaagcatcattctctgaacatat
                     t"
                     /listShort="S132, mtlA, mtlF, mtlD, ycsA, sipU, S133"
                     /GFF_Attribute="listLong"
     S_feature       431619..431691
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_449651_449723"
                     /HighExp="S0, dia5, Gly, G135, B60, T0.30H, BT, G180,
                     G150, M40t45"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S132"
     CDS             431692..433128
                     /gene="mtlA"
                     /locus_tag="BSU_03981"
                     /old_locus_tag="BSU03981"
                     /EC_number="2.7.1.197"
                     /function="16.1: Circulate"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12897001, 23279188"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12897001, 23279188;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     mannitol-specific enzyme IICB component"
                     /protein_id="NP_388280.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03981"
                     /db_xref="EnsemblGenomes-Tr:CAB12206"
                     /db_xref="GOA:P42956"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR003501"
                     /db_xref="InterPro:IPR004718"
                     /db_xref="InterPro:IPR013011"
                     /db_xref="InterPro:IPR013014"
                     /db_xref="InterPro:IPR029503"
                     /db_xref="InterPro:IPR036095"
                     /db_xref="SubtiList:BG11215"
                     /db_xref="UniProtKB/Swiss-Prot:P42956"
                     /translation="MQQQEQQQGGMKVKVQRFGSYLSGMIMPNIGAFIAWGIITALFI
                     PAGWFPNEQLNTLVSPMITYLLPLLIAYTGGKMIYDHRGGVVGATAAIGVIVGSDIPM
                     FLGAMIMGPLGGYLIKQTDKLFKDKVKQGFEMLINNFTAGIVGAALTILAFYAIGPVV
                     LTLNKLLAAGVEVIVHANLLPVASVFVEPAKVLFLNNAINHGILSPIGIEQASQTGKS
                     ILFLVEANPGPGLGILLAYMFFGKGSSKSTAPGAAIIHFFGGIHEIYFPYILMKPALI
                     LAAIAGGASGLLTFTIFNAGLVAAASPGSIIALMAMTPRGGYFGVLAGVLVAAAVSFI
                     VSAVILKSSKASEEDLAAATEKMQSMKGKKSQAAAALEAEQAKAEEASELSPESVNKI
                     IFACDAGMGSSAMGASILRNKVKKAELDISVTNTAINNLPSDADIVITHKDLTDRAKA
                     KLPNATHISVDNFLNSPKYDELIEKLKK*"
     gene            431692..433128
                     /gene="mtlA"
                     /locus_tag="BSU_03981"
                     /old_locus_tag="BSU03981"
     CDS             433153..433584
                     /gene="mtlF"
                     /locus_tag="BSU_03982"
                     /old_locus_tag="BSU03982"
                     /EC_number="2.7.1.197"
                     /function="16.1: Circulate"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12897001, 23279188"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12897001, 23279188;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     mannitol-specific enzyme IIA component"
                     /protein_id="YP_003097678.1"
                     /db_xref="EnsemblGenomes-Gn:BSU03982"
                     /db_xref="EnsemblGenomes-Tr:CAX52549"
                     /db_xref="GOA:C0H3V2"
                     /db_xref="InterPro:IPR002178"
                     /db_xref="InterPro:IPR016152"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V2"
                     /translation="MQVLAKENIKLNQTVSSKEEAIKLAGQTLIDNGYVTEDYISKMF
                     EREETSSTFMGNFIAIPHGTEEAKSEVLHSGISIIQIPEGVEYGEGNTAKVVFGIAGK
                     NNEHLDILSNIAIICSEEENIERLISAKSEEDLIAIFNEVN*"
     gene            433153..433584
                     /gene="mtlF"
                     /locus_tag="BSU_03982"
                     /old_locus_tag="BSU03982"
     CDS             433586..434707
                     /gene="mtlD"
                     /locus_tag="BSU_03990"
                     /old_locus_tag="BSU03990"
                     /EC_number="1.1.1.17"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12897001, 22014119, 23279188"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12897001, 22014119,
                     23279188; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="NP_388281.2"
                     /db_xref="EnsemblGenomes-Gn:BSU03990"
                     /db_xref="EnsemblGenomes-Tr:CAB12207"
                     /db_xref="GOA:P42957"
                     /db_xref="InterPro:IPR000669"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR013118"
                     /db_xref="InterPro:IPR013131"
                     /db_xref="InterPro:IPR013328"
                     /db_xref="InterPro:IPR023027"
                     /db_xref="InterPro:IPR023028"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11216"
                     /db_xref="UniProtKB/Swiss-Prot:P42957"
                     /translation="MIALHFGAGNIGRGFIGALLHHSGYDVVFADVNETMVSLLNEKK
                     EYTVELAEEGRSSEIIGPVSAINSGSQTEELYRLMNEAALITTAVGPNVLKLIAPSIA
                     EGLRRRNTANTLNIIACENMIGGSSFLKKEIYSHLTEAEQKSVSETVGFPNSAVDRIV
                     PIQHHEDPLKVSVEPFFEWVIDESGFKGKTPVINGALFVDDLTPYIERKLFTVNTGHA
                     VTAYVGYQRGLKTVKEAIDHPEIRRVVHSALLETGDYLVKSYGFKQTEHEQYIKKIIG
                     RFENPFISDDVTRVARSPLRKLGENDRLVGPAKKIKEPNALAEGIAAALRFDFTGDPE
                     AVELQALIEEKGYSGVLQEVCGIQSHEPLHAIILKKLNQ*"
     gene            433586..434707
                     /gene="mtlD"
                     /locus_tag="BSU_03990"
                     /old_locus_tag="BSU03990"
     downshifts      434690
                     /Source="Nicolas_upshifts"
                     /id="D178"
                     /incds=0
                     /nref=46
                     /ntot=156
                     /MaxReadThrough="5.56503"
                     /MaxDrop="4.72154"
                     /score="32.3837677"
                     /energy="-13.4"
                     /TU="U307"
                     /idTUdmin="U308"
                     /TUdmin="-1254"
                     /isTUend="FALSE"
     promotor_-35    434736..434739
                     /Source="Nicolas_upshift_promotors"
                     /id="U308"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.964035964035964"
                     /psig=1
                     /xcortree=1552
                     /SigmaFactorBS="ttaatcaataaccgaccacccgtgacacaatgtcacgggCTT
                     TttttactatctcgcaATCTAGTATAATAGAAAGCGcttacgataacaggggaaggag
                     a"
                     /listShort="ycsA"
                     /listLong="sipU, S133, ycsD"
                     /label="promotor_-35"
     promotor_-10    434755..434774
                     /Source="Nicolas_upshift_promotors"
                     /id="U308"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.964035964035964"
                     /psig=1
                     /xcortree=1552
                     /SigmaFactorBS="ttaatcaataaccgaccacccgtgacacaatgtcacgggCTT
                     TttttactatctcgcaATCTAGTATAATAGAAAGCGcttacgataacaggggaaggag
                     a"
                     /listShort="ycsA"
                     /listLong="sipU, S133, ycsD"
                     /label="promotor_-10"
     upshifts        434757
                     /Source="Nicolas_upshifts"
                     /id="U308"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.964035964035964"
                     /psig=1
                     /xcortree=1552
                     /SigmaFactorBS="ttaatcaataaccgaccacccgtgacacaatgtcacgggCTT
                     TttttactatctcgcaATCTAGTATAATAGAAAGCGcttacgataacaggggaaggag
                     a"
                     /listShort="ycsA"
                     /listLong="sipU, S133, ycsD"
     CDS             434798..435862
                     /gene="ycsA"
                     /locus_tag="BSU_04000"
                     /old_locus_tag="BSU04000"
                     /EC_number="1.1.1.93"
                     /EC_number="1.1.1.83"
                     /EC_number="4.1.1.73"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10568751, 12356321; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative tartrate dehydrogenase"
                     /protein_id="NP_388282.3"
                     /db_xref="EnsemblGenomes-Gn:BSU04000"
                     /db_xref="EnsemblGenomes-Tr:CAB12208"
                     /db_xref="GOA:P42958"
                     /db_xref="InterPro:IPR011829"
                     /db_xref="InterPro:IPR019818"
                     /db_xref="InterPro:IPR024084"
                     /db_xref="SubtiList:BG11222"
                     /db_xref="UniProtKB/Swiss-Prot:P42958"
                     /translation="MTMKQFEIAAIPGDGVGKEVVAAAEKVLHTAAEVHGGLSFSFTA
                     FPWSCDYYLEHGKMMPEDGIHTLTQFEAVFLGAVGNPKLVPDHISLWGLLLKIRRELE
                     LSINMRPAKQMAGITSPLLHPNDFDFVVIRENSEGEYSEVGGRIHRGDDEIAIQNAVF
                     TRKATERVMRFAFELAKKRRSHVTSATKSNGIYHAMPFWDEVFQQTAADYSGIETSSQ
                     HIDALAAFFVTRPETFDVIVASNLFGDILTDISSSLMGSIGIAPSANINPSGKYPSMF
                     EPVHGSAPDIAGQGLANPIGQIWTAKLMLDHFGEEELGAKILDVMEQVTADGIKTRDI
                     GGQSTTAEVTDEICSRLRKL*"
     gene            434798..435862
                     /gene="ycsA"
                     /locus_tag="BSU_04000"
                     /old_locus_tag="BSU04000"
     promotor_-35    435032..435040
                     /Source="Nicolas_upshift_promotors"
                     /id="U309"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.96903096903097"
                     /psig="0.96903096903097"
                     /xcortree=1234
                     /SigmaFactorBS="atttgaagcagtttttttgggagctgtcGGAAATCCGaagct
                     ggttcccgATCATATATCGTTATGGGGGctgctgctgaaaatccggagggagcttgag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    435054..435073
                     /Source="Nicolas_upshift_promotors"
                     /id="U309"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.96903096903097"
                     /psig="0.96903096903097"
                     /xcortree=1234
                     /SigmaFactorBS="atttgaagcagtttttttgggagctgtcGGAAATCCGaagct
                     ggttcccgATCATATATCGTTATGGGGGctgctgctgaaaatccggagggagcttgag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        435064
                     /Source="Nicolas_upshifts"
                     /id="U309"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.96903096903097"
                     /psig="0.96903096903097"
                     /xcortree=1234
                     /SigmaFactorBS="atttgaagcagtttttttgggagctgtcGGAAATCCGaagct
                     ggttcccgATCATATATCGTTATGGGGGctgctgctgaaaatccggagggagcttgag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      435856
                     /Source="Nicolas_upshifts"
                     /id="D179"
                     /incds=0
                     /nref=7
                     /ntot=41
                     /MaxReadThrough="4.24123"
                     /MaxDrop="4.42639"
                     /score="9.70532694"
                     /energy="-11.6"
                     /TU="U307,U308"
                     /idTUdmin="U308"
                     /TUdmin="-88"
                     /isTUend="FALSE"
     promotor_-35    435929..435936
                     /Source="Nicolas_upshift_promotors"
                     /id="U310"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.567432567432567"
                     /psig="0.996003996003996"
                     /xcortree=2303
                     /SigmaFactorBS="atttccttacgaaaatttccacgaaagTCTAACCAagcagat
                     ccaaaTGCTGTATAATAATTTGGAAttcttaggaaagcatcgggtgaaggaagttgaa
                     t"
                     /listShort="sipU, S133, ycsD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    435949..435968
                     /Source="Nicolas_upshift_promotors"
                     /id="U310"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.567432567432567"
                     /psig="0.996003996003996"
                     /xcortree=2303
                     /SigmaFactorBS="atttccttacgaaaatttccacgaaagTCTAACCAagcagat
                     ccaaaTGCTGTATAATAATTTGGAAttcttaggaaagcatcgggtgaaggaagttgaa
                     t"
                     /listShort="sipU, S133, ycsD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        435962
                     /Source="Nicolas_upshifts"
                     /id="U310"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.567432567432567"
                     /psig="0.996003996003996"
                     /xcortree=2303
                     /SigmaFactorBS="atttccttacgaaaatttccacgaaagTCTAACCAagcagat
                     ccaaaTGCTGTATAATAATTTGGAAttcttaggaaagcatcgggtgaaggaagttgaa
                     t"
                     /listShort="sipU, S133, ycsD"
                     /GFF_Attribute="listLong"
     CDS             435997..436560
                     /gene="sipU"
                     /locus_tag="BSU_04010"
                     /old_locus_tag="BSU04010"
                     /EC_number="3.4.21.89"
                     /function="16.1: Circulate"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:9325333, 10198007, 11856304, 14568161"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9325333, 10198007,
                     11856304, 14568161; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase"
                     /protein_id="NP_388283.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04010"
                     /db_xref="EnsemblGenomes-Tr:CAB12209"
                     /db_xref="GOA:P42959"
                     /db_xref="InterPro:IPR000223"
                     /db_xref="InterPro:IPR015927"
                     /db_xref="InterPro:IPR019756"
                     /db_xref="InterPro:IPR019757"
                     /db_xref="InterPro:IPR019758"
                     /db_xref="InterPro:IPR036286"
                     /db_xref="SubtiList:BG11223"
                     /db_xref="UniProtKB/Swiss-Prot:P42959"
                     /translation="MNAKTITLKKKRKIKTIVVLSIIMIAALIFTIRLVFYKPFLIEG
                     SSMAPTLKDSERILVDKAVKWTGGFHRGDIIVIHDKKSGRSFVKRLIGLPGDSIKMKN
                     DQLYINDKKVEEPYLKEYKQEVKESGVTLTGDFEVEVPSGKYFVMGDNRLNSLDSRNG
                     MGMPSEDDIIGTESLVFYPFGEMRQAK*"
     gene            435997..436560
                     /gene="sipU"
                     /locus_tag="BSU_04010"
                     /old_locus_tag="BSU04010"
     S_feature       436561..437285
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_454593_455317"
                     /HighExp="G150, Oxctl, Lbexp, G135, Paraq, dia0, LBGexp,
                     Mt0, G180, dia15"
                     /AntisenseName="yczH"
                     /AntisenseCor="0.134432865921808"
                     /AntisenseRegPval="-1.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.996, 1"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S133"
     CDS             complement(436620..437228)
                     /gene="yczH"
                     /locus_tag="BSU_04020"
                     /old_locus_tag="BSU04020"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388284.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04020"
                     /db_xref="EnsemblGenomes-Tr:CAB12210"
                     /db_xref="GOA:O31482"
                     /db_xref="InterPro:IPR002925"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12782"
                     /db_xref="UniProtKB/Swiss-Prot:O31482"
                     /translation="MFPKPLVILAHEIYGVNSHMKKMGRLIKMAGYDVLTPNLLGEDE
                     VYTLKEEKTAYEQFTKHERLKTGETIIQNVIRQNAGRHIFVIGFSVGATIAWKCSSMP
                     EVSGSVCYYGSRIRDSLHHMPACPVLLFFPNYEPSFDVALLIKKLREKQHTHLEIYQF
                     DALHGFANPDSVYFNRALFFKTLSIIKNGAESRLRTVSSSFF*"
     gene            complement(436620..437228)
                     /gene="yczH"
                     /locus_tag="BSU_04020"
                     /old_locus_tag="BSU04020"
     misc_feature    complement(437246..437265)
                     /Source="Nicolas_upshift_promotors"
                     /id="U311"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.993006993006993"
                     /xcortree=2931
                     /SigmaFactorBS="aagataatgagttcattttatatctcctttttttgaccatta
                     tatctcagcctaaagtgaaacgATAGGATATAATGGAAAAAAcacaaaaggaggccgt
                     t"
                     /listShort="yczH"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-35    437262..437268
                     /Source="Nicolas_upshift_promotors"
                     /id="U312"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.995004995004995"
                     /xcortree=3001
                     /SigmaFactorBS="ataacggcctccttttgtgttttttccattatatcCTATCGT
                     ttcactttaggcTGAGATATAATGGTCAAAAAaaggagatataaaatgaactcattat
                     c"
                     /listShort="ycsD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(437269)
                     /Source="Nicolas_upshifts"
                     /id="U311"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.397602397602398"
                     /psig="0.993006993006993"
                     /xcortree=2931
                     /SigmaFactorBS="aagataatgagttcattttatatctcctttttttgaccatta
                     tatctcagcctaaagtgaaacgATAGGATATAATGGAAAAAAcacaaaaggaggccgt
                     t"
                     /listShort="yczH"
                     /GFF_Attribute="listLong"
     promotor_-10    437281..437300
                     /Source="Nicolas_upshift_promotors"
                     /id="U312"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.995004995004995"
                     /xcortree=3001
                     /SigmaFactorBS="ataacggcctccttttgtgttttttccattatatcCTATCGT
                     ttcactttaggcTGAGATATAATGGTCAAAAAaaggagatataaaatgaactcattat
                     c"
                     /listShort="ycsD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        437287
                     /Source="Nicolas_upshifts"
                     /id="U312"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.995004995004995"
                     /xcortree=3001
                     /SigmaFactorBS="ataacggcctccttttgtgttttttccattatatcCTATCGT
                     ttcactttaggcTGAGATATAATGGTCAAAAAaaggagatataaaatgaactcattat
                     c"
                     /listShort="ycsD"
                     /GFF_Attribute="listLong"
     CDS             437314..437706
                     /gene="ycsD"
                     /locus_tag="BSU_04030"
                     /old_locus_tag="BSU04030"
                     /EC_number="4.2.1.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12682299, 16291680,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxyacyl-(acyl carrier protein)
                     dehydratase"
                     /protein_id="NP_388285.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04030"
                     /db_xref="EnsemblGenomes-Tr:CAB12211"
                     /db_xref="InterPro:IPR013114"
                     /db_xref="InterPro:IPR029069"
                     /db_xref="SubtiList:BG11225"
                     /db_xref="UniProtKB/Swiss-Prot:P42961"
                     /translation="MNSLSLPHRYPFLFIDGVTDSEPGKHAAAYKLISENDWFITDTQ
                     TEMPFSLVIEALAQTAAFTGITDENSLGLLSSVKKAEKLGEAVPGDRLDLTFEVTRNR
                     RGFVFGHAKASVGEQPVAEAEIGIYIEK*"
     gene            437314..437706
                     /gene="ycsD"
                     /locus_tag="BSU_04030"
                     /old_locus_tag="BSU04030"
     downshifts      437683
                     /Source="Nicolas_upshifts"
                     /id="D180"
                     /incds=0
                     /nref=23
                     /ntot=189
                     /MaxReadThrough="1.8721"
                     /MaxDrop="3.42324"
                     /score="-5.4921522"
                     /energy="-13.6"
                     /TU="NA"
                     /idTUdmin="U310"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(437739..437903)
                     /gene="yczO"
                     /locus_tag="BSU_04039"
                     /old_locus_tag="BSU04039"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="YP_003097679.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04039"
                     /db_xref="EnsemblGenomes-Tr:CAX52550"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V3"
                     /translation="MTEKKQQNKPNENPEHNDLTDPIPNEELKENMNDEKHKRQQRDN
                     SQSERDYDTK*"
     gene            complement(437739..437903)
                     /gene="yczO"
                     /locus_tag="BSU_04039"
                     /old_locus_tag="BSU04039"
     downshifts      complement(437759)
                     /Source="Nicolas_upshifts"
                     /id="D181"
                     /incds=0
                     /nref=101
                     /ntot=193
                     /MaxReadThrough="1.44096"
                     /MaxDrop="6.55741"
                     /score="22.582242"
                     /energy="-10.6"
                     /TU="NA"
                     /idTUdmin="U313"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(437913..437931)
                     /Source="Nicolas_upshift_promotors"
                     /id="U313"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=206
                     /SigmaFactorBS="ttctaatacattatacccagcgggacaaaaaagcgatttcct
                     aTGTTTGAggagaatgaataagAGGAAAACAAACGGTGAGGtgatcaaacatgacaga
                     a"
                     /listShort="yczO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(437935)
                     /Source="Nicolas_upshifts"
                     /id="U313"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=206
                     /SigmaFactorBS="ttctaatacattatacccagcgggacaaaaaagcgatttcct
                     aTGTTTGAggagaatgaataagAGGAAAACAAACGGTGAGGtgatcaaacatgacaga
                     a"
                     /listShort="yczO"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(437946..437952)
                     /Source="Nicolas_upshift_promotors"
                     /id="U313"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=206
                     /SigmaFactorBS="ttctaatacattatacccagcgggacaaaaaagcgatttcct
                     aTGTTTGAggagaatgaataagAGGAAAACAAACGGTGAGGtgatcaaacatgacaga
                     a"
                     /listShort="yczO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    437965..437972
                     /Source="Nicolas_upshift_promotors"
                     /id="U314"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=2352
                     /SigmaFactorBS="cctcttattcattctcctcaaacataggaaatcgctTTTTTG
                     TCccgctgggtataaTGTATTAGAATAGAGAGAAGcacaacaaaaagataaagagagg
                     t"
                     /listShort="ycsE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    437986..438005
                     /Source="Nicolas_upshift_promotors"
                     /id="U314"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=2352
                     /SigmaFactorBS="cctcttattcattctcctcaaacataggaaatcgctTTTTTG
                     TCccgctgggtataaTGTATTAGAATAGAGAGAAGcacaacaaaaagataaagagagg
                     t"
                     /listShort="ycsE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        437989
                     /Source="Nicolas_upshifts"
                     /id="U314"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=2352
                     /SigmaFactorBS="cctcttattcattctcctcaaacataggaaatcgctTTTTTG
                     TCccgctgggtataaTGTATTAGAATAGAGAGAAGcacaacaaaaagataaagagagg
                     t"
                     /listShort="ycsE"
                     /GFF_Attribute="listLong"
     CDS             438036..438785
                     /gene="ribZ"
                     /locus_tag="BSU_04040"
                     /old_locus_tag="BSU04040"
                     /EC_number="3.1.3.-"
                     /function="4.9: Riboflavin, FMN, and FAD"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 26316208, 27435445,
                     27784292; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-ribitylamino-2,4(1H,
                     3H)-pyrimidinedione 5'-phosphate phosphatase / 5'
                     nucleotidase"
                     /protein_id="NP_388286.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04040"
                     /db_xref="EnsemblGenomes-Tr:CAB12212"
                     /db_xref="GOA:P42962"
                     /db_xref="InterPro:IPR006379"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="SubtiList:BG11226"
                     /db_xref="UniProtKB/Swiss-Prot:P42962"
                     /translation="MSVQREDVDIKLIAIDMDGTLLNDEQLISDENRKAIREAEDKGV
                     YVVISTGRTLMTCRELAESLKLSSFLITANGSEIWDSNFNLVERKLLHTDHIQMMWDL
                     RNKHNTNFWASTVNKVWRGEFPENITDHEWLKFGFDIEDDDIRNEVLEELRKNKELEI
                     TNSSPTNIEVNALGINKAAALAKVTEKLGFTMENVMAMGDSLNDIAMIKEAGLGVAMG
                     NAQDIVKETADYITDTNIEDGVAKAIRHWVL*"
     gene            438036..438785
                     /gene="ribZ"
                     /locus_tag="BSU_04040"
                     /old_locus_tag="BSU04040"
     downshifts      438762
                     /Source="Nicolas_upshifts"
                     /id="D182"
                     /incds=0
                     /nref=219
                     /ntot=253
                     /MaxReadThrough="3.23506"
                     /MaxDrop="6.84998"
                     /score="19.5535298"
                     /energy="-11.7"
                     /TU="NA"
                     /idTUdmin="U314"
                     /TUdmin="-21"
                     /isTUend="TRUE"
     downshifts      complement(438838)
                     /Source="Nicolas_upshifts"
                     /id="D183"
                     /incds=0
                     /nref=1
                     /ntot=7
                     /MaxReadThrough="0.52326"
                     /MaxDrop="2.84763"
                     /score="25.9755124"
                     /energy="-11.7"
                     /TU="NA"
                     /idTUdmin="U313"
                     /TUdmin="-1079"
                     /isTUend="FALSE"
     promotor_-35    438868..438874
                     /Source="Nicolas_upshift_promotors"
                     /id="U315"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.996003996003996"
                     /xcortree=2194
                     /SigmaFactorBS="attctgggaccatggtaggttttctgacaaaagtATTTCACa
                     aactgatatgatTCACTTATAATGAAATAAAGttcaaaaattcggaatagtcgttccg
                     a"
                     /listShort="S134, ycsF, ycsG, ycsI, kipI, kipA, kipR,
                     lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    438888..438907
                     /Source="Nicolas_upshift_promotors"
                     /id="U315"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.996003996003996"
                     /xcortree=2194
                     /SigmaFactorBS="attctgggaccatggtaggttttctgacaaaagtATTTCACa
                     aactgatatgatTCACTTATAATGAAATAAAGttcaaaaattcggaatagtcgttccg
                     a"
                     /listShort="S134, ycsF, ycsG, ycsI, kipI, kipA, kipR,
                     lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       438894..438990
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_456926_457022"
                     /HighExp="S1, Cold, S0, GM 5, BMM, MG 25, Lbtran, aero, GM
                     10, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S134"
     upshifts        438894
                     /Source="Nicolas_upshifts"
                     /id="U315"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.996003996003996"
                     /xcortree=2194
                     /SigmaFactorBS="attctgggaccatggtaggttttctgacaaaagtATTTCACa
                     aactgatatgatTCACTTATAATGAAATAAAGttcaaaaattcggaatagtcgttccg
                     a"
                     /listShort="S134, ycsF, ycsG, ycsI, kipI, kipA, kipR,
                     lipC"
                     /GFF_Attribute="listLong"
     CDS             438991..439764
                     /gene="pxpA"
                     /locus_tag="BSU_04050"
                     /old_locus_tag="BSU04050"
                     /EC_number="3.5.2.9"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9334321, 28830929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9334321, 28830929;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="oxoprolinase subunit A"
                     /protein_id="NP_388287.3"
                     /db_xref="EnsemblGenomes-Gn:BSU04050"
                     /db_xref="EnsemblGenomes-Tr:CAB12213"
                     /db_xref="GOA:P42963"
                     /db_xref="InterPro:IPR005501"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="SubtiList:BG11227"
                     /db_xref="UniProtKB/Swiss-Prot:P42963"
                     /translation="MFQIDLNCDLGESFGAYKIGLDQDILEYVTSANIACGFHAGDPS
                     VMRKTVALAAERGVKMGAHPGLPDLLGFGRRNMAISPEEAYDLVVYQIGALSGFLKAE
                     GLHMQHVKPHGALYNMAAVDQKLSDAIAKAVYKVDPGLILFGLAESELVKAGERIGLQ
                     TANEVFADRTYQSDGTLTPRSQPDALIESDDAAVTQVIKMVKEGAVKSQQGHDVSLKA
                     DTVCIHGDGAHALTFAQKIRKQLKAAGIEVTAISEQRST*"
     gene            438991..439764
                     /gene="pxpA"
                     /locus_tag="BSU_04050"
                     /old_locus_tag="BSU04050"
     CDS             439779..440993
                     /gene="pxpG"
                     /locus_tag="BSU_04060"
                     /old_locus_tag="BSU04060"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 9334321, 15849754,
                     16850406, 28830929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoproline transporter"
                     /protein_id="NP_388288.3"
                     /db_xref="EnsemblGenomes-Gn:BSU04060"
                     /db_xref="EnsemblGenomes-Tr:CAB12214"
                     /db_xref="GOA:P42964"
                     /db_xref="InterPro:IPR001046"
                     /db_xref="SubtiList:BG11228"
                     /db_xref="UniProtKB/Swiss-Prot:P42964"
                     /translation="MEQQKKTAGKKAGSWSLLMGAAFLMATSAIGPGFLTQTATFTNT
                     LAASFGFVILISIILDIFAQTNVWRIIAVSGKRGQEIANMVLPGLGYFIAILVVLGGL
                     AFNIGNIGGAGLGLQVLFGITPETGALISAVIAILIFVIKEAGKAMDRFTQIAGFVMI
                     ILTVYVAATTAPPVGQAVANTFVPEHISIFAIVTLVGGTVGGYITFAGGHRLLDAGIK
                     GKESIPQVTKSSVVGILITSVMRIALFLAVLGVVSKGLHIDESNPAASVFKLAAGNVG
                     YKIFGLIMWSAAITSVIGAAYTSVSFFKTFSPKIEKNSRGIIIGFIVVSTLAFVTIGQ
                     PAKILVLVGSLNGLILPIALGTLLVAAYKKNIVGDYKHPLWLTSTGALVVIVMAVMGI
                     YTLCTQLPQLWS*"
     gene            439779..440993
                     /gene="pxpG"
                     /locus_tag="BSU_04060"
                     /old_locus_tag="BSU04060"
     CDS             441017..441790
                     /gene="pxpI"
                     /locus_tag="BSU_04070"
                     /old_locus_tag="BSU04070"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8186229, 9334321,
                     28830929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative D-5-oxoproline epimerase"
                     /protein_id="NP_388289.3"
                     /db_xref="EnsemblGenomes-Gn:BSU04070"
                     /db_xref="EnsemblGenomes-Tr:CAB12215"
                     /db_xref="GOA:P42966"
                     /db_xref="InterPro:IPR009906"
                     /db_xref="InterPro:IPR016938"
                     /db_xref="SubtiList:BG11230"
                     /db_xref="UniProtKB/Swiss-Prot:P42966"
                     /translation="MAPKDVRALIREGKINGPTAGMSGGYAQANLVVLKKDLAFDFLL
                     FCQRNQKPCPVLDVTEAGSPVPSLAAPDADIRTDFPKYRIYRHGILTEEVSDITPYWE
                     DDFVGFLIGCSFSFEQALINNGIAVRHIDEGTNVSMYKTNIDCVPAGAFHGQMVVSMR
                     PVPERLAVRAAQVTSRFPAVHGGPIHIGNPGAIGIRDLGKPDFGDAVSIRDGEVPVFW
                     ACGVTPQAVAMNVKPEMVITHAPGHMLITDIRDESLAVL*"
     gene            441017..441790
                     /gene="pxpI"
                     /locus_tag="BSU_04070"
                     /old_locus_tag="BSU04070"
     CDS             441835..442557
                     /gene="pxpB"
                     /locus_tag="BSU_04080"
                     /old_locus_tag="BSU04080"
                     /EC_number="3.5.2.9"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:9334321, 18823995, 19040634, 20524093, 21050859,
                     21245531, 22277658, 28830929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9334321, 18823995,
                     19040634, 20524093, 21050859, 21245531, 22277658,
                     28830929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-5-oxoprolinase (ATP-dependent) subunit B"
                     /protein_id="NP_388290.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04080"
                     /db_xref="EnsemblGenomes-Tr:CAB12216"
                     /db_xref="GOA:P60495"
                     /db_xref="InterPro:IPR003833"
                     /db_xref="InterPro:IPR010016"
                     /db_xref="InterPro:IPR024946"
                     /db_xref="InterPro:IPR029000"
                     /db_xref="PDB:2KWA"
                     /db_xref="PDB:2ZP2"
                     /db_xref="SubtiList:BG11231"
                     /db_xref="UniProtKB/Swiss-Prot:P60495"
                     /translation="MTVRYQIEQLGDSAMMIRFGEEINEQVNGIVHAAAAYIEEQPFP
                     GFIECIPAFTSLTVFYDMYEVYKHLPQGISSPFESVKRDVEERLAEIAEDYEVNRRIV
                     EIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHTNGEYVVYMLGFAPGFPFLGGMSKRI
                     AAPRKSSPRPSIPAGSVGIAGLQTGVYPISTPGGWQLIGKTPLALFRPQENPPTLLRA
                     GDIVKFVRISEKDYHAYKEESN*"
     gene            441835..442557
                     /gene="pxpB"
                     /locus_tag="BSU_04080"
                     /old_locus_tag="BSU04080"
     CDS             442560..443567
                     /gene="pxpC"
                     /locus_tag="BSU_04090"
                     /old_locus_tag="BSU04090"
                     /EC_number="3.5.2.9"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9334321, 18823995, 19040634, 20524093, 21050859,
                     21245531, 22277658, 28830929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9334321, 18823995,
                     19040634, 20524093, 21050859, 21245531, 22277658,
                     28830929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-5-oxoprolinase (ATP-dependent) subunit C"
                     /protein_id="YP_054571.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04090"
                     /db_xref="EnsemblGenomes-Tr:CAE01447"
                     /db_xref="GOA:Q7WY77"
                     /db_xref="InterPro:IPR003778"
                     /db_xref="InterPro:IPR029000"
                     /db_xref="SubtiList:BG14193"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY77"
                     /translation="MKVLKPGLLTTVQDIGRTGYQKYGVLASGAMDTVSLRIANLLIG
                     NGENEAGLEITMMGPGPSFHFSKQTLIAVTGADFTLRINDEEAPLWKPVLIKENSTVS
                     FGPCKLGSRAYLAAAGGIEVPAVMESKSTYVRGSIGGLHGRALQKEDELNIGEMSALS
                     QTILSRLSSQLGKQGFAAPKWSVSRGRFLPLKKNPVIRVLEGKQFAFFTEESKTRFYE
                     EAFRVTPQSDRMGYRLKGEPLELKAPLEMVSEAVSFGTVQVPPDGNPIILLADRQTTG
                     GYPRIAHIISADLPIVSQIMPGEHVQFEPVSLQEAEALAVEREQHIKELKTRMKMEWL
                     T*"
     gene            442560..443567
                     /gene="pxpC"
                     /locus_tag="BSU_04090"
                     /old_locus_tag="BSU04090"
     downshifts      443053
                     /Source="Nicolas_upshifts"
                     /id="D184"
                     /incds=1
                     /nref=6
                     /ntot=27
                     /MaxReadThrough="5.04721"
                     /MaxDrop="4.5277"
                     /score="-7.2426149"
                     /energy="-12.4"
                     /TU="U315"
                     /idTUdmin="U315"
                     /TUdmin="-1975"
                     /isTUend="FALSE"
     promotor_no_box 443147..443247
                     /Source="Nicolas_upshift_promotors"
                     /id="U316"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.645354645354645"
                     /psig="0.020979020979021"
                     /xcortree=1726
                     /SigmaFactorBS="cattcgggtgctggaaggaaagcaatttgcctttttcacaga
                     agaatcaaaaacgcgtttttatgaagaagcatttcgtgtcacgccgcagtccgaccgt
                     a"
                     /listShort="kipR, lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        443207
                     /Source="Nicolas_upshifts"
                     /id="U316"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.645354645354645"
                     /psig="0.020979020979021"
                     /xcortree=1726
                     /SigmaFactorBS="cattcgggtgctggaaggaaagcaatttgcctttttcacaga
                     agaatcaaaaacgcgtttttatgaagaagcatttcgtgtcacgccgcagtccgaccgt
                     a"
                     /listShort="kipR, lipC"
                     /GFF_Attribute="listLong"
     CDS             443583..444335
                     /gene="pxpR"
                     /locus_tag="BSU_04100"
                     /old_locus_tag="BSU04100"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9334321; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of the pxp operon
                     (IclR family)"
                     /protein_id="NP_388291.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04100"
                     /db_xref="EnsemblGenomes-Tr:CAB12217"
                     /db_xref="GOA:P42968"
                     /db_xref="InterPro:IPR005471"
                     /db_xref="InterPro:IPR014757"
                     /db_xref="InterPro:IPR029016"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG11214"
                     /db_xref="UniProtKB/Swiss-Prot:P42968"
                     /translation="MQNKNKTVVKSMALLNLFLHKPSLTLSELVSLTGMPKTSVHRMV
                     SSLEEMGFLSRDASGAYSLGLVFLEFGQLVADRLDIRKIAKPVMEELCREVDEAVQLI
                     MRDGNEAIYVEKIEGTQTVRLYTAIGRRSPLYAGACARSILSFLPREEIEAYIKQTEL
                     ISIGSGTITDPEKLLQEIDASVQNGYTVSYSELENYTAAIGAPIFNHERQVAAGISIA
                     GFEARFTEDRLPYLTEKVKDAALQISRKIGYT*"
     gene            443583..444335
                     /gene="pxpR"
                     /locus_tag="BSU_04100"
                     /old_locus_tag="BSU04100"
     promotor_-35    444333..444342
                     /Source="Nicolas_upshift_promotors"
                     /id="U317"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1275
                     /SigmaFactorBS="cagatttcaagaaaaataggatatacaTAAGTAGCCAatctt
                     ttctctgcTGCGTACATTAACGTATCGAcgttcaagagtggaggaaagaacatggtgc
                     t"
                     /listShort="lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    444356..444375
                     /Source="Nicolas_upshift_promotors"
                     /id="U317"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1275
                     /SigmaFactorBS="cagatttcaagaaaaataggatatacaTAAGTAGCCAatctt
                     ttctctgcTGCGTACATTAACGTATCGAcgttcaagagtggaggaaagaacatggtgc
                     t"
                     /listShort="lipC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        444366
                     /Source="Nicolas_upshifts"
                     /id="U317"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1275
                     /SigmaFactorBS="cagatttcaagaaaaataggatatacaTAAGTAGCCAatctt
                     ttctctgcTGCGTACATTAACGTATCGAcgttcaagagtggaggaaagaacatggtgc
                     t"
                     /listShort="lipC"
                     /GFF_Attribute="listLong"
     CDS             444399..445040
                     /gene="lipC"
                     /locus_tag="BSU_04110"
                     /old_locus_tag="BSU04110"
                     /EC_number="3.1.1.-"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:9334321, 17220230, 20057119"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9334321, 17220230,
                     20057119; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat phospholipase B"
                     /protein_id="NP_388292.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04110"
                     /db_xref="EnsemblGenomes-Tr:CAB12218"
                     /db_xref="GOA:P42969"
                     /db_xref="InterPro:IPR013830"
                     /db_xref="InterPro:IPR036514"
                     /db_xref="SubtiList:BG11232"
                     /db_xref="UniProtKB/Swiss-Prot:P42969"
                     /translation="MVLRYTALGDSLTTGRGSGLFSPGFVQRFGDMMEADLKTRTAIN
                     IFARSGLNTEEILGLLSYPYVQKCIRDADMITITGCGNDLIDSVLAYQTSKDETIFSR
                     VSAHCHENFEKMIAKVAEIKGENPSPYAIRVFNLYNPFPEIDIAGKWITSFNSHLETL
                     ASAPHVKIADAYSIFKGKEQEYLSFDGVHPNSKGYQAMAEAVHKLGYKELSVS*"
     gene            444399..445040
                     /gene="lipC"
                     /locus_tag="BSU_04110"
                     /old_locus_tag="BSU04110"
     downshifts      445026
                     /Source="Nicolas_upshifts"
                     /id="D185"
                     /incds=0
                     /nref=106
                     /ntot=223
                     /MaxReadThrough="0.550230000000001"
                     /MaxDrop="6.63515"
                     /score="26.7371783"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U315"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     S_feature       complement(445038..445463)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_463070_463495_c"
                     /HighExp="S1, Sw, BC, S2, Lbtran, M0t90, LPhT, BI, M40t45,
                     C90"
                     /AntisenseName="yczI"
                     /AntisenseCor="-0.57558682544748696"
                     /AntisenseRegPval="-24.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.965"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S135"
     downshifts      complement(445083)
                     /Source="Nicolas_upshifts"
                     /id="D186"
                     /incds=0
                     /nref=171
                     /ntot=252
                     /MaxReadThrough="1.91715"
                     /MaxDrop="5.13764"
                     /score="6.4765859"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U319"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     promotor_-35    445116..445122
                     /Source="Nicolas_upshift_promotors"
                     /id="U318"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.361638361638362"
                     /psig="0.998001998001998"
                     /xcortree=2779
                     /SigmaFactorBS="gatcgaaatattaaaagaaacttaaaattctctgtcttcTGT
                     TCTAcagacaaacaaagTGCGCTAGAATAATGGAGGGcgtaggcaaatatagccataa
                     c"
                     /listShort="yczI, S136, pbpC, S137, ycsN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    445136..445155
                     /Source="Nicolas_upshift_promotors"
                     /id="U318"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.361638361638362"
                     /psig="0.998001998001998"
                     /xcortree=2779
                     /SigmaFactorBS="gatcgaaatattaaaagaaacttaaaattctctgtcttcTGT
                     TCTAcagacaaacaaagTGCGCTAGAATAATGGAGGGcgtaggcaaatatagccataa
                     c"
                     /listShort="yczI, S136, pbpC, S137, ycsN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        445137
                     /Source="Nicolas_upshifts"
                     /id="U318"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.361638361638362"
                     /psig="0.998001998001998"
                     /xcortree=2779
                     /SigmaFactorBS="gatcgaaatattaaaagaaacttaaaattctctgtcttcTGT
                     TCTAcagacaaacaaagTGCGCTAGAATAATGGAGGGcgtaggcaaatatagccataa
                     c"
                     /listShort="yczI, S136, pbpC, S137, ycsN"
                     /GFF_Attribute="listLong"
     CDS             445213..445458
                     /gene="yczI"
                     /locus_tag="BSU_04120"
                     /old_locus_tag="BSU04120"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388293.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04120"
                     /db_xref="EnsemblGenomes-Tr:CAB12219"
                     /db_xref="GOA:P42970"
                     /db_xref="InterPro:IPR025018"
                     /db_xref="SubtiList:BG12783"
                     /db_xref="UniProtKB/Swiss-Prot:P42970"
                     /translation="MFRIFKMSFAVIIIILALIAFNYTEHTSVIQSVMLVFLGAVMFM
                     QGLEERKKENDGSGAFNIYTAVFVWSVSLIGFTLHII*"
     gene            445213..445458
                     /gene="yczI"
                     /locus_tag="BSU_04120"
                     /old_locus_tag="BSU04120"
     S_feature       445459..445869
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_463491_463901"
                     /HighExp="T5.0H, T2.30H, T3.30H, T2.0H, T3.0H, T4.0H,
                     T1.30H, M9-stat, T-4.40H, T-3.40H"
                     /AntisenseName="yczJ"
                     /AntisenseCor="-0.20847541933848601"
                     /AntisenseRegPval="-3.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S136"
     CDS             complement(445464..445751)
                     /gene="yczJ"
                     /locus_tag="BSU_04130"
                     /old_locus_tag="BSU04130"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388294.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04130"
                     /db_xref="EnsemblGenomes-Tr:CAB12220"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="SubtiList:BG12784"
                     /db_xref="UniProtKB/Swiss-Prot:O31484"
                     /translation="MVREAAMLHIKEGLEQEFEDAFRQAAPIISGMKGYITHSLSKCM
                     EETHKYLLLVEWETLEDHTEGFRGSSEYQEWKALLHRFYTPFPTVEHFQDV*"
     gene            complement(445464..445751)
                     /gene="yczJ"
                     /locus_tag="BSU_04130"
                     /old_locus_tag="BSU04130"
     misc_feature    complement(445772..445791)
                     /Source="Nicolas_upshift_promotors"
                     /id="U319"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.965034965034965"
                     /xcortree=1595
                     /SigmaFactorBS="aagatttttttgaaaatgaaggaaaagttcaccgattttgca
                     gaaatctcctatcgtTTGCTGTAGACTATTTGAAAagacagaaagaagggatagcatg
                     g"
                     /listShort="yczJ, S135"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(445788)
                     /Source="Nicolas_upshifts"
                     /id="U319"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.965034965034965"
                     /xcortree=1595
                     /SigmaFactorBS="aagatttttttgaaaatgaaggaaaagttcaccgattttgca
                     gaaatctcctatcgtTTGCTGTAGACTATTTGAAAagacagaaagaagggatagcatg
                     g"
                     /listShort="yczJ, S135"
                     /GFF_Attribute="listLong"
     promotor_-35    445845..445849
                     /Source="Nicolas_upshift_promotors"
                     /id="U320"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.855144855144855"
                     /psig="0.946053946053946"
                     /xcortree=2681
                     /SigmaFactorBS="aaatcggtgaacttttccttcattttcaaaaaaaTCTTGcac
                     gcaccaattcaatTAAGAGAAAATAACAAGTGGaaggcaggggaaagtcatgttaaaa
                     a"
                     /listShort="pbpC, S137, ycsN, S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    445866..445885
                     /Source="Nicolas_upshift_promotors"
                     /id="U320"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.855144855144855"
                     /psig="0.946053946053946"
                     /xcortree=2681
                     /SigmaFactorBS="aaatcggtgaacttttccttcattttcaaaaaaaTCTTGcac
                     gcaccaattcaatTAAGAGAAAATAACAAGTGGaaggcaggggaaagtcatgttaaaa
                     a"
                     /listShort="pbpC, S137, ycsN, S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        445871
                     /Source="Nicolas_upshifts"
                     /id="U320"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.855144855144855"
                     /psig="0.946053946053946"
                     /xcortree=2681
                     /SigmaFactorBS="aaatcggtgaacttttccttcattttcaaaaaaaTCTTGcac
                     gcaccaattcaatTAAGAGAAAATAACAAGTGGaaggcaggggaaagtcatgttaaaa
                     a"
                     /listShort="pbpC, S137, ycsN, S138, mtlR"
                     /GFF_Attribute="listLong"
     CDS             445902..447908
                     /gene="pbpC"
                     /locus_tag="BSU_04140"
                     /old_locus_tag="BSU04140"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8830698, 10648534"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8830698, 10648534;
                     Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding lipoprotein 3;
                     transpeptidase"
                     /protein_id="NP_388295.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04140"
                     /db_xref="EnsemblGenomes-Tr:CAB12221"
                     /db_xref="GOA:P42971"
                     /db_xref="InterPro:IPR001460"
                     /db_xref="InterPro:IPR005311"
                     /db_xref="InterPro:IPR007887"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR032710"
                     /db_xref="InterPro:IPR036138"
                     /db_xref="SubtiList:BG11234"
                     /db_xref="UniProtKB/Swiss-Prot:P42971"
                     /translation="MLKKCILLVFLCVGLIGLIGCSKTDSPEDRMEAFVKQWNDQQFD
                     DMYQSLTKDVKKEISKKDFVNRYKAIYEQAGVKNLKVTAGEVDKDDQDNKTMKHIPYK
                     VSMNTNAGKVSFKNTAVLKLEKTDDEESWNIDWDPSFIFKQLADDKTVQIMSIEPKRG
                     QIYDKNGKGLAVNTDVPEIGIVPGELGDKKEKVIKELAKKLDLTEDDIKKKLDQGWVK
                     DDSFVPLKKVKPDQEKLVSEATSLQGVTRTNVSSRYYPYGEKTAHLTGYVRAITAEEL
                     KKKKEGTYSDTSNIGIAGLENVYEDKLRGTTGWKIYVPQTGEVIAEKKAKDGEDLHLT
                     IDIKTQMKLYDELKDDSGAAVALQPKTGETLALVSAPSYDPNGFIFGWSDKEWKKLNK
                     DKNNPFSAKFNKTYAPGSTIKPIAAAIGIKNGTLKADEKKTIKGKEWQKDSSWGGYSV
                     TRVSERLQQVDLENALITSDNIYFAQNALDMGADTFTKGLKTFGFSEDVPYEFPIQKS
                     SIANDKLDSDILLADTGYGQGQMQMSPLHLATAYTPFVDNGDLVKPTLIKKDSQTADV
                     WHKQVVTKEGAADITKGLKGVVEDERGSAYQPVVKGITVAGKTGTAELKTSKDDKDGT
                     ENGWFVGYDYENKDLLVAMMIQNVQDRGGSHYVVEKAKKQFQSN*"
     gene            445902..447908
                     /gene="pbpC"
                     /locus_tag="BSU_04140"
                     /old_locus_tag="BSU04140"
     S_feature       447909..448009
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_465941_466041"
                     /HighExp="LBGstat, T5.0H, M0t45, T3.30H, S0, LBGtran,
                     Oxctl, T4.0H, C30, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.946, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S137"
     CDS             448010..448912
                     /gene="ycsN"
                     /locus_tag="BSU_04150"
                     /old_locus_tag="BSU04150"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388296.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04150"
                     /db_xref="EnsemblGenomes-Tr:CAB12222"
                     /db_xref="GOA:P42972"
                     /db_xref="InterPro:IPR020471"
                     /db_xref="InterPro:IPR023210"
                     /db_xref="InterPro:IPR036812"
                     /db_xref="SubtiList:BG11235"
                     /db_xref="UniProtKB/Swiss-Prot:P42972"
                     /translation="MQRIQLAEDLQFSRVIHGLWRLNEWNYSDAELLSLIEWCIDHGI
                     TTFDHADIYGGYTCEKLFGNALALSPGLRENIELVTKCGIVLESPERPAHRSHHYNTS
                     KSHILASVEQSLMNLRTDYIDMLLIHRPDPLMDPEGVAEAFQALKCSGKVRYFGVSNF
                     KDHQYRMLESYLPEKLVTNQIELSAYELENMLDGTLNLCQEKRIPPMAWSPLAGGKVF
                     TENTDKDRRVRTALESVQGEIGAASLDEVMYAWLYTHPAGIMPIVGSGKRERISAAIN
                     ALSYKLDQDQWFRIFTAVQGYDIP*"
     gene            448010..448912
                     /gene="ycsN"
                     /locus_tag="BSU_04150"
                     /old_locus_tag="BSU04150"
     downshifts      448892
                     /Source="Nicolas_upshifts"
                     /id="D187"
                     /incds=0
                     /nref=48
                     /ntot=206
                     /MaxReadThrough="3.20352"
                     /MaxDrop="4.57855"
                     /score="1.36962171"
                     /energy="-10.6"
                     /TU="U320"
                     /idTUdmin="U318"
                     /TUdmin="-8"
                     /isTUend="TRUE"
     promotor_-35    448985..448992
                     /Source="Nicolas_upshift_promotors"
                     /id="U321"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.995004995004995"
                     /xcortree=1547
                     /SigmaFactorBS="gtcacaccgcttagtgccaaattaccatttataagTGATTGA
                     TtctttcttgaaagCGTTTTATATTAAAAGGAAAcctctctatatcctctactgcatc
                     t"
                     /listShort="S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    449006..449025
                     /Source="Nicolas_upshift_promotors"
                     /id="U321"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.995004995004995"
                     /xcortree=1547
                     /SigmaFactorBS="gtcacaccgcttagtgccaaattaccatttataagTGATTGA
                     TtctttcttgaaagCGTTTTATATTAAAAGGAAAcctctctatatcctctactgcatc
                     t"
                     /listShort="S138, mtlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       449010..449097
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_467042_467129"
                     /HighExp="S0, Gly, BC, Lbstat, S2, M9-stat, G135, dia5,
                     T0.30H, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.995, 0.946"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S138"
     upshifts        449010
                     /Source="Nicolas_upshifts"
                     /id="U321"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.995004995004995"
                     /xcortree=1547
                     /SigmaFactorBS="gtcacaccgcttagtgccaaattaccatttataagTGATTGA
                     TtctttcttgaaagCGTTTTATATTAAAAGGAAAcctctctatatcctctactgcatc
                     t"
                     /listShort="S138, mtlR"
                     /GFF_Attribute="listLong"
     CDS             449098..451182
                     /gene="mtlR"
                     /locus_tag="BSU_04160"
                     /old_locus_tag="BSU04160"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12897001, 23279188, 24196428, 26159071"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12897001, 23279188,
                     24196428, 26159071; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator, PTS-dependent
                     activator"
                     /protein_id="NP_388297.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04160"
                     /db_xref="EnsemblGenomes-Tr:CAB12223"
                     /db_xref="GOA:P96574"
                     /db_xref="InterPro:IPR002178"
                     /db_xref="InterPro:IPR003501"
                     /db_xref="InterPro:IPR007737"
                     /db_xref="InterPro:IPR011608"
                     /db_xref="InterPro:IPR013011"
                     /db_xref="InterPro:IPR013196"
                     /db_xref="InterPro:IPR016152"
                     /db_xref="InterPro:IPR036095"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="InterPro:IPR036634"
                     /db_xref="SubtiList:BG12049"
                     /db_xref="UniProtKB/Swiss-Prot:P96574"
                     /translation="MYMTAREQKLLKHLLLQNRYITVTELAELMQVSTRTIHRELKSI
                     KPLMETVGLTLDKQPGKGLKAVGSPEGKQKLLTDLSYEQHEYSADERKLLILCSLLES
                     QEPVKLYTLAHDLQVTNATVSYDLDELEKWISPFGLTLIRKRGFGIQLIGPENAKRKI
                     VGNLIVNRLDIQMFLEAVELNIKGKTDSSEKMFGVVSKGELLKMERILFQLKEKIAFS
                     LSDSSYIALVVHLTYAIERIKLGETITMEQNELEELMNAKEYSSALEIAGELERAFGV
                     TIPEAEVGYITIHLRSANRKYKTEYKAQEIELETALQTKRLIAFISDKIRMDLTKNYS
                     LYEGLIAHLEPAVSRIKENIEIYNPMKEQIKRDYFLLYMAIEEGVEKYFPGMSFSDDE
                     IAFIVLHFGSALEIKKEEAKVKALVVCSSGIGSSKMLASRLKKELPEIESFDMSSLIE
                     LKGKDVQAYDMIVSTVPIPYENIDYIMVSPLLNEEDANQVKQYIKRKIPLILNKKRSS
                     KEEAQQADVPDMLEAAESIGRYMEVIQDVLRHFTLAQLKTNPDHSMLLLELFQQLKKD
                     GLIRDPEKAAVCLAEREKQGGLGIPGTNMALYHLKNDEIVLPFFKMFDLSTPYEVDGM
                     DGNTLRMTRILVMMAPGSLSAEGSEILSAISSAIIESGESMAGFQEEGGQELYQRLNR
                     IFFTWMKEKNIL*"
     gene            449098..451182
                     /gene="mtlR"
                     /locus_tag="BSU_04160"
                     /old_locus_tag="BSU04160"
     downshifts      451169
                     /Source="Nicolas_upshifts"
                     /id="D188"
                     /incds=0
                     /nref=107
                     /ntot=220
                     /MaxReadThrough="1.91059"
                     /MaxDrop="5.63565"
                     /score="9.4904968"
                     /energy="-12.4"
                     /TU="NA"
                     /idTUdmin="U321"
                     /TUdmin="-19"
                     /isTUend="TRUE"
     promotor_-35    451211..451217
                     /Source="Nicolas_upshift_promotors"
                     /id="U322"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=739
                     /SigmaFactorBS="acctgcatggcacacgtcaaaaatttggCGTGTGTttttctg
                     tggatgGGGAACAAAATAAGAAAATgtgggactattttatcattcagtattggaataa
                     t"
                     /listShort="S139, ydaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    451231..451249
                     /Source="Nicolas_upshift_promotors"
                     /id="U322"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=739
                     /SigmaFactorBS="acctgcatggcacacgtcaaaaatttggCGTGTGTttttctg
                     tggatgGGGAACAAAATAAGAAAATgtgggactattttatcattcagtattggaataa
                     t"
                     /listShort="S139, ydaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        451243
                     /Source="Nicolas_upshifts"
                     /id="U322"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=739
                     /SigmaFactorBS="acctgcatggcacacgtcaaaaatttggCGTGTGTttttctg
                     tggatgGGGAACAAAATAAGAAAATgtgggactattttatcattcagtattggaataa
                     t"
                     /listShort="S139, ydaB"
                     /GFF_Attribute="listLong"
     S_feature       451254..451335
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_469286_469367"
                     /HighExp="Etha, S5, S6, ferm, S8, nit, S7, BT, Salt, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S139"
     promotor_-35    451297..451304
                     /Source="Nicolas_upshift_promotors"
                     /id="U323"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.69030969030969"
                     /psig="0.992007992007992"
                     /xcortree=1439
                     /SigmaFactorBS="gaataattccaaaatgaaatAGTTTTACaagttatctttttT
                     GGGTTAAAATGGGTGAGGTaaggaagaaaatctaacaaattattgaagattcaagaga
                     a"
                     /listShort="ydaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    451318..451337
                     /Source="Nicolas_upshift_promotors"
                     /id="U323"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.69030969030969"
                     /psig="0.992007992007992"
                     /xcortree=1439
                     /SigmaFactorBS="gaataattccaaaatgaaatAGTTTTACaagttatctttttT
                     GGGTTAAAATGGGTGAGGTaaggaagaaaatctaacaaattattgaagattcaagaga
                     a"
                     /listShort="ydaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        451337
                     /Source="Nicolas_upshifts"
                     /id="U323"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.69030969030969"
                     /psig="0.992007992007992"
                     /xcortree=1439
                     /SigmaFactorBS="gaataattccaaaatgaaatAGTTTTACaagttatctttttT
                     GGGTTAAAATGGGTGAGGTaaggaagaaaatctaacaaattattgaagattcaagaga
                     a"
                     /listShort="ydaB"
                     /GFF_Attribute="listLong"
     CDS             451394..452905
                     /gene="ydaB"
                     /locus_tag="BSU_04170"
                     /old_locus_tag="BSU04170"
                     /EC_number="6.2.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA ligase"
                     /protein_id="NP_388298.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04170"
                     /db_xref="EnsemblGenomes-Tr:CAB12224"
                     /db_xref="GOA:P96575"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="SubtiList:BG12050"
                     /db_xref="UniProtKB/Swiss-Prot:P96575"
                     /translation="METLQHLILHDMPNSEEIEAVKSGDHTLTYKGYRKRINQLANAM
                     LQKGIQKGDRVALLCKNGHPASTVMFAALEIGAVVVPVSWQLKPYEMTGILKASEPKA
                     MFYGAEFKEILDEVLPELSSLCVTMETGTAYETSAEFEALFAGPDHLPETEMVSPDDT
                     ALLMFTSGTTGNPKRCMITHGGIYRYVKKSNSSIARMKGLRFLACHPIYHTSALICIM
                     LGTFAETTFVFTKDQDPVHMLKVIEEEKIQTVMALPVFYTYLLEAWEKHQTDLSSLVI
                     LMTGGTKVPSSLISRYLDIGIPLAHGYGSTEAWGISTWTPDMGMDKAASAGKPVAGVK
                     VKVEDPLTGEELPQGEIGEIVVHTPFLFKGYEDNPEATAKVLQNGWFRTGDSGYVDED
                     GFIFITGRYKDVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFIVK
                     NGGQRITEEDVIAFCKERLSAYKIPEVEFVNELPKNNLGKVKKDVLRNQAVHS*"
     gene            451394..452905
                     /gene="ydaB"
                     /locus_tag="BSU_04170"
                     /old_locus_tag="BSU04170"
     downshifts      452889
                     /Source="Nicolas_upshifts"
                     /id="D189"
                     /incds=0
                     /nref=3
                     /ntot=55
                     /MaxReadThrough="0.57376"
                     /MaxDrop="3.70168"
                     /score="9.4904968"
                     /energy="-12.4"
                     /TU="NA"
                     /idTUdmin="U323"
                     /TUdmin=73
                     /isTUend="FALSE"
     CDS             complement(452925..453470)
                     /gene="ydaC"
                     /locus_tag="BSU_04180"
                     /old_locus_tag="BSU04180"
                     /EC_number="2.1.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative methyltransferase"
                     /protein_id="NP_388299.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04180"
                     /db_xref="EnsemblGenomes-Tr:CAB12225"
                     /db_xref="GOA:P96576"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG12051"
                     /db_xref="UniProtKB/Swiss-Prot:P96576"
                     /translation="MIAGYIMAAENQTLNQWTINQLGITRGDSILEVGFGPGYCMQQM
                     LKREKDVHLHGIDVSEAMLKLAARRVKPKGVRLIQGSIETFPLPASFYDKVISVNNYT
                     IWNDQTKGIKQIYRALKPGGKAAITMQPREADASPEKTKSFGRQMIADFKAAGFEDID
                     IQFKNIKPELSVCATAKKPAT*"
     gene            complement(452925..453470)
                     /gene="ydaC"
                     /locus_tag="BSU_04180"
                     /old_locus_tag="BSU04180"
     downshifts      complement(452958)
                     /Source="Nicolas_upshifts"
                     /id="D190"
                     /incds=0
                     /nref=3
                     /ntot=11
                     /MaxReadThrough="1.44039"
                     /MaxDrop="3.73662"
                     /score="-9.35066962"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U324"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(453537..453555)
                     /Source="Nicolas_upshift_promotors"
                     /id="U324"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=211
                     /SigmaFactorBS="tggcttggcaccttcgcattgctttatcagaaaaaTGTTTCA
                     catggaacgctgagAGGAAATTAACTCAAAAAGggggttggttgctgaatgattaaca
                     t"
                     /listShort="ydaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(453551)
                     /Source="Nicolas_upshifts"
                     /id="U324"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=211
                     /SigmaFactorBS="tggcttggcaccttcgcattgctttatcagaaaaaTGTTTCA
                     catggaacgctgagAGGAAATTAACTCAAAAAGggggttggttgctgaatgattaaca
                     t"
                     /listShort="ydaC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(453570..453576)
                     /Source="Nicolas_upshift_promotors"
                     /id="U324"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=211
                     /SigmaFactorBS="tggcttggcaccttcgcattgctttatcagaaaaaTGTTTCA
                     catggaacgctgagAGGAAATTAACTCAAAAAGggggttggttgctgaatgattaaca
                     t"
                     /listShort="ydaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    453612..453618
                     /Source="Nicolas_upshift_promotors"
                     /id="U325"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=191
                     /SigmaFactorBS="tgaaacatttttctgataaagcaatgcgaaggtgccaagcca
                     TGTTTATccaaagagtgtgtgAGGTACACAACAAATAGACatgaaaacaaaggaggag
                     a"
                     /listShort="ydaD, ydaE, ydaF"
                     /listLong="ydaG, S140"
                     /label="promotor_-35"
     upshifts        453630
                     /Source="Nicolas_upshifts"
                     /id="U325"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=191
                     /SigmaFactorBS="tgaaacatttttctgataaagcaatgcgaaggtgccaagcca
                     TGTTTATccaaagagtgtgtgAGGTACACAACAAATAGACatgaaaacaaaggaggag
                     a"
                     /listShort="ydaD, ydaE, ydaF"
                     /listLong="ydaG, S140"
     promotor_-10    453633..453651
                     /Source="Nicolas_upshift_promotors"
                     /id="U325"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=191
                     /SigmaFactorBS="tgaaacatttttctgataaagcaatgcgaaggtgccaagcca
                     TGTTTATccaaagagtgtgtgAGGTACACAACAAATAGACatgaaaacaaaggaggag
                     a"
                     /listShort="ydaD, ydaE, ydaF"
                     /listLong="ydaG, S140"
                     /label="promotor_-10"
     CDS             453677..454537
                     /gene="ydaD"
                     /locus_tag="BSU_04190"
                     /old_locus_tag="BSU04190"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10220166, 11948145,
                     15805528, 21520290, 28197687; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative dehydrogenase"
                     /protein_id="NP_388300.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04190"
                     /db_xref="EnsemblGenomes-Tr:CAB12226"
                     /db_xref="GOA:P80873"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12052"
                     /db_xref="UniProtKB/Swiss-Prot:P80873"
                     /translation="MANYPKELPAQTQSRQPGIESEMNPSPVYEYEDYKGADKLKGKV
                     ALITGGDSGIGRAVSVAYAKEGADIAIVYKDEHEDAEETKKRVEQEGVKCLLIAGDVG
                     EEEFCNEAVEKTVKELGGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLT
                     KKAIDYLKPGSAIINTTSINPYVGNPTLIDYTATKGAINAFTRTMAQALVKDGIRVNA
                     VAPGPIWTPLIPATFPEETVAQFGQDTPMGRPGQPVEHVGCYVLLASDESSYMTGQTL
                     HVNGGNFVTT*"
     gene            453677..454537
                     /gene="ydaD"
                     /locus_tag="BSU_04190"
                     /old_locus_tag="BSU04190"
     CDS             454553..455056
                     /gene="lyxE"
                     /locus_tag="BSU_04200"
                     /old_locus_tag="BSU04200"
                     /EC_number="5.3.1.15"
                     /experiment="publication(s) with functional evidences,
                     PMID:10220166, 15805528, 21421786, 21520290"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10220166, 15805528,
                     21421786, 21520290; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-lyxose ketol isomerase"
                     /protein_id="NP_388301.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04200"
                     /db_xref="EnsemblGenomes-Tr:CAB12227"
                     /db_xref="GOA:P96578"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="PDB:2Y0O"
                     /db_xref="SubtiList:BG12053"
                     /db_xref="UniProtKB/Swiss-Prot:P96578"
                     /translation="MGITKEEVNSYYQKAGIVLTDEEVDQIQLMDYGLGKERKVGLQL
                     FVYVNTDRYCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEGEKTPL
                     PKVLPPQEDREHYTVWHEIELEPGGQYTIPPNTKHWFQAGEEGAVVTEMSSTSTDKHD
                     IFTDPRI*"
     gene            454553..455056
                     /gene="lyxE"
                     /locus_tag="BSU_04200"
                     /old_locus_tag="BSU04200"
     downshifts      455037
                     /Source="Nicolas_upshifts"
                     /id="D191"
                     /incds=0
                     /nref=16
                     /ntot=26
                     /MaxReadThrough="4.81615"
                     /MaxDrop="6.21035"
                     /score="29.8440619"
                     /energy="-15.5"
                     /TU="U325"
                     /idTUdmin="U325"
                     /TUdmin="-683"
                     /isTUend="FALSE"
     promotor_-35    455085..455092
                     /Source="Nicolas_upshift_promotors"
                     /id="U326"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2929
                     /SigmaFactorBS="agaatataaggatgggcttaacagcccatcctttttgTATTG
                     AAAaaaacagaatcatCGCTATAATGGGTAAAAAAGgaaagagggcgaggcaatgttc
                     a"
                     /listShort="ydaF, ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    455106..455125
                     /Source="Nicolas_upshift_promotors"
                     /id="U326"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2929
                     /SigmaFactorBS="agaatataaggatgggcttaacagcccatcctttttgTATTG
                     AAAaaaacagaatcatCGCTATAATGGGTAAAAAAGgaaagagggcgaggcaatgttc
                     a"
                     /listShort="ydaF, ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        455108
                     /Source="Nicolas_upshifts"
                     /id="U326"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2929
                     /SigmaFactorBS="agaatataaggatgggcttaacagcccatcctttttgTATTG
                     AAAaaaacagaatcatCGCTATAATGGGTAAAAAAGgaaagagggcgaggcaatgttc
                     a"
                     /listShort="ydaF, ydaG, S140"
                     /GFF_Attribute="listLong"
     CDS             455142..455693
                     /gene="ydaF"
                     /locus_tag="BSU_04210"
                     /old_locus_tag="BSU04210"
                     /EC_number="2.3.1.-"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15468321; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ribosomal protein N-acetyltransferase"
                     /protein_id="NP_388302.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04210"
                     /db_xref="EnsemblGenomes-Tr:CAB12228"
                     /db_xref="GOA:P96579"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="PDB:1NSL"
                     /db_xref="SubtiList:BG12054"
                     /db_xref="UniProtKB/Swiss-Prot:P96579"
                     /translation="MFTCKVNEHITIRLLEPKDAERLAELIIQNQQRLGKWLFFAENP
                     SSADTYRETIIPDWRRQYADLNGIEAGLLYDGSLCGMISLHNLDQVNRKAEIGYWIAK
                     EFEGKGIITAACRKLITYAFEELELNRVAICAAVGNEKSRAVPERIGFLEEGKARDGL
                     YVNGMHHDLVYYSLLKREWEGEK*"
     gene            455142..455693
                     /gene="ydaF"
                     /locus_tag="BSU_04210"
                     /old_locus_tag="BSU04210"
     promotor_-35    455708..455714
                     /Source="Nicolas_upshift_promotors"
                     /id="U327"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=268
                     /SigmaFactorBS="ggcgaaaaataaagagcacactttctTGTTTAAatcttcccc
                     ggatgTGGAAAAGTAACAGCGGAGacgttaaaaaggagtgattcgagatgaatcagca
                     a"
                     /listShort="ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    455729..455747
                     /Source="Nicolas_upshift_promotors"
                     /id="U327"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=268
                     /SigmaFactorBS="ggcgaaaaataaagagcacactttctTGTTTAAatcttcccc
                     ggatgTGGAAAAGTAACAGCGGAGacgttaaaaaggagtgattcgagatgaatcagca
                     a"
                     /listShort="ydaG, S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        455742
                     /Source="Nicolas_upshifts"
                     /id="U327"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=268
                     /SigmaFactorBS="ggcgaaaaataaagagcacactttctTGTTTAAatcttcccc
                     ggatgTGGAAAAGTAACAGCGGAGacgttaaaaaggagtgattcgagatgaatcagca
                     a"
                     /listShort="ydaG, S140"
                     /GFF_Attribute="listLong"
     CDS             455771..456193
                     /gene="ydaG"
                     /locus_tag="BSU_04220"
                     /old_locus_tag="BSU04220"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10220166; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative general stress protein"
                     /protein_id="NP_388303.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04220"
                     /db_xref="EnsemblGenomes-Tr:CAB12229"
                     /db_xref="GOA:P80238"
                     /db_xref="InterPro:IPR012349"
                     /db_xref="SubtiList:BG19017"
                     /db_xref="UniProtKB/Swiss-Prot:P80238"
                     /translation="MNQQDIKQKVLDVLDHHKVGSLATVQKGKPHSRYMTFFHDGLTI
                     YTPTSKETHKAEEIENNPNVHILLGYDCEGFGDAYVEVAGKAKINNSAELKDKIWSSK
                     LERWFDGKDDPNLVILEIEPEDIRLMNAGEKTPVSLEL*"
     gene            455771..456193
                     /gene="ydaG"
                     /locus_tag="BSU_04220"
                     /old_locus_tag="BSU04220"
     promotor_-35    456198..456206
                     /Source="Nicolas_upshift_promotors"
                     /id="U328"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig="0.993006993006993"
                     /xcortree=273
                     /SigmaFactorBS="gtctcactcgaactataaaaaaTTTGTGTTTtcaggggcgaT
                     ATGTTATTATGAATAGCTAgtaagaaaaataagcaaataaaaaagaaagtaaacttct
                     t"
                     /listShort="S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    456217..456236
                     /Source="Nicolas_upshift_promotors"
                     /id="U328"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig="0.993006993006993"
                     /xcortree=273
                     /SigmaFactorBS="gtctcactcgaactataaaaaaTTTGTGTTTtcaggggcgaT
                     ATGTTATTATGAATAGCTAgtaagaaaaataagcaaataaaaaagaaagtaaacttct
                     t"
                     /listShort="S140"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       456236..456602
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_474268_474634"
                     /HighExp="Etha, Salt, Cold, Sw, B60, Gly, M9-stat, LPhT,
                     B36, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB, SigA"
                     /TUshortPSig="0.993, 0.999, 1"
                     /TUlongSig="SigB"
                     /TUlongPSig=1
                     /label="S140"
     upshifts        456236
                     /Source="Nicolas_upshifts"
                     /id="U328"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.753246753246753"
                     /psig="0.993006993006993"
                     /xcortree=273
                     /SigmaFactorBS="gtctcactcgaactataaaaaaTTTGTGTTTtcaggggcgaT
                     ATGTTATTATGAATAGCTAgtaagaaaaataagcaaataaaaaagaaagtaaacttct
                     t"
                     /listShort="S140"
                     /GFF_Attribute="listLong"
     promotor_no_box complement(456262..456362)
                     /Source="Nicolas_upshift_promotors"
                     /id="U329"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.725274725274725"
                     /psig="0.010989010989011"
                     /xcortree=121
                     /SigmaFactorBS="aggggcgatttgttatgaaggaaaagaataagggcagctggt
                     tatgctgcttgggaagcggtaagcttctctctcaaaacagaaaaaagaagtttacttt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     misc_RNA        complement(456297..456565)
                     /gene="bsrC"
                     /locus_tag="BSU_misc_RNA_64"
                     /product="small regulatory RNA"
                     /experiment="publication(s) with functional evidences,
                     PMID:18948176, 23457461"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 18948176, 23457461;
                     Product type n: RNA"
     gene            complement(456297..456565)
                     /gene="bsrC"
                     /locus_tag="BSU_misc_RNA_64"
     upshifts        complement(456302)
                     /Source="Nicolas_upshifts"
                     /id="U329"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.725274725274725"
                     /psig="0.010989010989011"
                     /xcortree=121
                     /SigmaFactorBS="aggggcgatttgttatgaaggaaaagaataagggcagctggt
                     tatgctgcttgggaagcggtaagcttctctctcaaaacagaaaaaagaagtttacttt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      456559
                     /Source="Nicolas_upshifts"
                     /id="D192"
                     /incds=0
                     /nref=124
                     /ntot=275
                     /MaxReadThrough="2.67264"
                     /MaxDrop="7.35087"
                     /score="29.9942993"
                     /energy="-12"
                     /TU="NA"
                     /idTUdmin="U326"
                     /TUdmin=3
                     /isTUend="TRUE"
     promotor_-35    456639..456648
                     /Source="Nicolas_upshift_promotors"
                     /id="U330"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1651
                     /SigmaFactorBS="gacggtttttttattgcaaaaaacacatcgtacTGAAACCTC
                     CttgtcttctttcCAGTCTTATCTCTAGGatgaaattggaggaagaataacgtgcatg
                     t"
                     /listShort="ydaH, lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    456661..456676
                     /Source="Nicolas_upshift_promotors"
                     /id="U330"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1651
                     /SigmaFactorBS="gacggtttttttattgcaaaaaacacatcgtacTGAAACCTC
                     CttgtcttctttcCAGTCTTATCTCTAGGatgaaattggaggaagaataacgtgcatg
                     t"
                     /listShort="ydaH, lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        456666
                     /Source="Nicolas_upshifts"
                     /id="U330"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1651
                     /SigmaFactorBS="gacggtttttttattgcaaaaaacacatcgtacTGAAACCTC
                     CttgtcttctttcCAGTCTTATCTCTAGGatgaaattggaggaagaataacgtgcatg
                     t"
                     /listShort="ydaH, lrpC, topB"
                     /GFF_Attribute="listLong"
     CDS             456699..457508
                     /gene="amj"
                     /locus_tag="BSU_04230"
                     /old_locus_tag="BSU04230"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 25918422, 27537185"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     25918422, 27537185; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase"
                     /protein_id="NP_388304.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04230"
                     /db_xref="EnsemblGenomes-Tr:CAB12230"
                     /db_xref="GOA:P96581"
                     /db_xref="InterPro:IPR021260"
                     /db_xref="SubtiList:BG12055"
                     /db_xref="UniProtKB/Swiss-Prot:P96581"
                     /translation="MHVITTQVLFIFCFLLLIHSIETLAYATRLSGARVGFIASALSL
                     FNVMVIVSRMSNMVQQPFTGHLIDDAGKNALAIVGEQFRFLIFGSTVGTILGIILLPS
                     FVALFSRAIIHLAGGGGSVFQVFRKGFSKQGFKNALSYLRLPSISYVKGFHMRLIPKR
                     LFVINMLITSIYTIGVLSALYAGLLAPERSTTAVMASGLINGIATMLLAIFVDPKVSV
                     LADDVAKGKRSYIYLKWTSVTMVTSRVAGTLLAQLMFIPGAYYIAWLTKWF*"
     gene            456699..457508
                     /gene="amj"
                     /locus_tag="BSU_04230"
                     /old_locus_tag="BSU04230"
     downshifts      457489
                     /Source="Nicolas_upshifts"
                     /id="D193"
                     /incds=0
                     /nref=5
                     /ntot=103
                     /MaxReadThrough="2.92236"
                     /MaxDrop="3.54247"
                     /score="15.7032536"
                     /energy="-14.9"
                     /TU="U330"
                     /idTUdmin="U327"
                     /TUdmin=911
                     /isTUend="FALSE"
     CDS             complement(457552..457842)
                     /gene="ydzA"
                     /locus_tag="BSU_04240"
                     /old_locus_tag="BSU04240"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388305.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04240"
                     /db_xref="EnsemblGenomes-Tr:CAB12231"
                     /db_xref="GOA:O31485"
                     /db_xref="InterPro:IPR023845"
                     /db_xref="SubtiList:BG12807"
                     /db_xref="UniProtKB/Swiss-Prot:O31485"
                     /translation="MLHTPIGRLRTMGFIEGMSLLILLFIAMPLKYWAGLPLAVTIVG
                     SVHGGLFILYLLVLAYATFSVKWPLKWSAAGFIAAFVPFGNFLYDRGLRNYK*"
     gene            complement(457552..457842)
                     /gene="ydzA"
                     /locus_tag="BSU_04240"
                     /old_locus_tag="BSU04240"
     downshifts      complement(457556)
                     /Source="Nicolas_upshifts"
                     /id="D194"
                     /incds=0
                     /nref=235
                     /ntot=260
                     /MaxReadThrough="1.23465"
                     /MaxDrop="7.74945"
                     /score="10.1798531"
                     /energy="-14.9"
                     /TU="NA"
                     /idTUdmin="U332"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_feature    complement(457870..457889)
                     /Source="Nicolas_upshift_promotors"
                     /id="U332"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.967032967032967"
                     /xcortree=1622
                     /SigmaFactorBS="catgtaaaaatgaatgttttccgaacattttttgaaagctgt
                     catatgcccccccggATTGTTTATAGTATAAAATGaaaacgtgtccacaaggagggcg
                     a"
                     /listShort="ydzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     misc_feature    457870..457888
                     /Source="Nicolas_upshift_promotors"
                     /id="U331"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.343656343656344"
                     /psig="0.691308691308691"
                     /xcortree=306
                     /SigmaFactorBS="aagtcttccgatcggcgtgtgcagcataaatcgccctccttg
                     tggacacgttttCATTTTATACTATAAACAAtccgggggggcatatgacagctttcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        457876
                     /Source="Nicolas_upshifts"
                     /id="U331"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.343656343656344"
                     /psig="0.691308691308691"
                     /xcortree=306
                     /SigmaFactorBS="aagtcttccgatcggcgtgtgcagcataaatcgccctccttg
                     tggacacgttttCATTTTATACTATAAACAAtccgggggggcatatgacagctttcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     upshifts        complement(457886)
                     /Source="Nicolas_upshifts"
                     /id="U332"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.967032967032967"
                     /xcortree=1622
                     /SigmaFactorBS="catgtaaaaatgaatgttttccgaacattttttgaaagctgt
                     catatgcccccccggATTGTTTATAGTATAAAATGaaaacgtgtccacaaggagggcg
                     a"
                     /listShort="ydzA"
                     /GFF_Attribute="listLong"
     promotor_-35    457964..457971
                     /Source="Nicolas_upshift_promotors"
                     /id="U333"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.765234765234765"
                     /psig="0.999000999001"
                     /xcortree=2269
                     /SigmaFactorBS="aacattcatttttacatgccttttctagggaactgTACTTGT
                     CatttacaaaaataCCCGAGATAATGTGTACAAAatcaaaaaagaaggatgttgaaat
                     g"
                     /listShort="lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    457985..458004
                     /Source="Nicolas_upshift_promotors"
                     /id="U333"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.765234765234765"
                     /psig="0.999000999001"
                     /xcortree=2269
                     /SigmaFactorBS="aacattcatttttacatgccttttctagggaactgTACTTGT
                     CatttacaaaaataCCCGAGATAATGTGTACAAAatcaaaaaagaaggatgttgaaat
                     g"
                     /listShort="lrpC, topB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        457989
                     /Source="Nicolas_upshifts"
                     /id="U333"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.765234765234765"
                     /psig="0.999000999001"
                     /xcortree=2269
                     /SigmaFactorBS="aacattcatttttacatgccttttctagggaactgTACTTGT
                     CatttacaaaaataCCCGAGATAATGTGTACAAAatcaaaaaagaaggatgttgaaat
                     g"
                     /listShort="lrpC, topB"
                     /GFF_Attribute="listLong"
     CDS             458027..458461
                     /gene="lrpC"
                     /locus_tag="BSU_04250"
                     /old_locus_tag="BSU04250"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:9341680, 10606655, 10913073, 12458218, 16407330,
                     16528101"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9341680, 10606655,
                     10913073, 12458218, 16407330, 16528101; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (Lrp/AsnC family)"
                     /protein_id="NP_388306.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04250"
                     /db_xref="EnsemblGenomes-Tr:CAB12232"
                     /db_xref="GOA:P96582"
                     /db_xref="InterPro:IPR000485"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR019887"
                     /db_xref="InterPro:IPR019888"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2CFX"
                     /db_xref="SubtiList:BG12056"
                     /db_xref="UniProtKB/Swiss-Prot:P96582"
                     /translation="MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLE
                     SFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAAC
                     YMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG*"
     gene            458027..458461
                     /gene="lrpC"
                     /locus_tag="BSU_04250"
                     /old_locus_tag="BSU04250"
     promotor_-35    458458..458461
                     /Source="Nicolas_upshift_promotors"
                     /id="U334"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.988011988011988"
                     /xcortree=2491
                     /SigmaFactorBS="cgtcactcacgtcattttctcagaaattgacacgaaaaacgg
                     gcgcggTTAGagagtgccgcgcgaagTCTGTTATAATAACAGGATGagcgtgaaagaa
                     a"
                     /listShort="topB, S141, ydaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        458470
                     /Source="Nicolas_upshifts"
                     /id="U334"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.988011988011988"
                     /xcortree=2491
                     /SigmaFactorBS="cgtcactcacgtcattttctcagaaattgacacgaaaaacgg
                     gcgcggTTAGagagtgccgcgcgaagTCTGTTATAATAACAGGATGagcgtgaaagaa
                     a"
                     /listShort="topB, S141, ydaJ"
                     /GFF_Attribute="listLong"
     promotor_-10    458478..458497
                     /Source="Nicolas_upshift_promotors"
                     /id="U334"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.685314685314685"
                     /psig="0.988011988011988"
                     /xcortree=2491
                     /SigmaFactorBS="cgtcactcacgtcattttctcagaaattgacacgaaaaacgg
                     gcgcggTTAGagagtgccgcgcgaagTCTGTTATAATAACAGGATGagcgtgaaagaa
                     a"
                     /listShort="topB, S141, ydaJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             458526..460709
                     /gene="topB"
                     /locus_tag="BSU_04260"
                     /old_locus_tag="BSU04260"
                     /EC_number="5.99.1.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /function="16.9: Replicate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 16192570, 16556226;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="NP_388307.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04260"
                     /db_xref="EnsemblGenomes-Tr:CAB12233"
                     /db_xref="GOA:P96583"
                     /db_xref="InterPro:IPR000380"
                     /db_xref="InterPro:IPR003601"
                     /db_xref="InterPro:IPR003602"
                     /db_xref="InterPro:IPR005738"
                     /db_xref="InterPro:IPR006171"
                     /db_xref="InterPro:IPR013497"
                     /db_xref="InterPro:IPR013825"
                     /db_xref="InterPro:IPR023405"
                     /db_xref="InterPro:IPR023406"
                     /db_xref="InterPro:IPR034144"
                     /db_xref="SubtiList:BG11979"
                     /db_xref="UniProtKB/Swiss-Prot:P96583"
                     /translation="MSKTVVLAEKPSVGRDLARVLKCHKKGNGYLEGDQYIVTWALGH
                     LVTLADPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFNAVKSQLTRKDVNQIVI
                     ATDAGREGELVARWIIEKANVRKPIKRLWISSVTDKAIKEGFQKLRSGKEYENLYHSA
                     VARAEADWIVGINATRALTTKFNAQLSCGRVQTPTLAMIAKREADIQAFTPVPYYGIR
                     AAVDGMTLTWQDKKSKQTRTFNQDVTSRLLKNLQGKQAVVAELKKTAKKSFAPALYDL
                     TELQRDAHKRFGFSAKETLSVLQKLYEQHKLVTYPRTDSRFLSSDIVPTLKDRLEGME
                     VKPYAQYVSQIKKRGIKSHKGYVNDAKVSDHHAIIPTEEPLVLSSLSDKERKLYDLIA
                     KRFLAVLMPAFEYEETKVIAEIGGETFTAKGKTVQSQGWKAVYDMAEEDDEQEDDRDQ
                     TLPALQKGDTLAVRTLTETSGQTKPPARFNEGTLLSAMENPSAFMQGEEKGLVKTLGE
                     TGGLGTVATRADIIEKLFNSFLIEKKGQDIFITSKGKQLLQLVPEDLKSPALTAEWEQ
                     KLSAIAAGKLKSAVFIKDMKAYAHQTVKEIKNSSQTFRHDNITGTACPECGKMMLKVN
                     GKRGTMLVCQDRECGSRKTIARKTNARCPNCHKRMELRGQGEGQTFACVCGHREKLSV
                     FEKRKNKDKARATKRDVSSYMKKQNKDEPINNALAEQLKKLGLDK*"
     gene            458526..460709
                     /gene="topB"
                     /locus_tag="BSU_04260"
                     /old_locus_tag="BSU04260"
     downshifts      460692
                     /Source="Nicolas_upshifts"
                     /id="D195"
                     /incds=0
                     /nref=133
                     /ntot=245
                     /MaxReadThrough="3.22367"
                     /MaxDrop="6.18597"
                     /score="23.5229393"
                     /energy="-10.4"
                     /TU="U334"
                     /idTUdmin="U333"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    460758..460764
                     /Source="Nicolas_upshift_promotors"
                     /id="U335"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=179
                     /SigmaFactorBS="tgtgcctatcgcacaggttttttattggacttaggtccTGTT
                     TTCttaatgttcaaaaaGGGAAAAAAAAGCTAGCAAtctgcattttttttcttttata
                     g"
                     /listShort="S141, ydaJ, ydaK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    460779..460797
                     /Source="Nicolas_upshift_promotors"
                     /id="U335"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=179
                     /SigmaFactorBS="tgtgcctatcgcacaggttttttattggacttaggtccTGTT
                     TTCttaatgttcaaaaaGGGAAAAAAAAGCTAGCAAtctgcattttttttcttttata
                     g"
                     /listShort="S141, ydaJ, ydaK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       460780..460911
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_478812_478943"
                     /HighExp="Etha, Salt, Heat, Cold, H2O2, G180, LPhT, Oxctl,
                     Paraq, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigA"
                     /TUshortPSig="1, 0.988"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S141"
     upshifts        460780
                     /Source="Nicolas_upshifts"
                     /id="U335"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=179
                     /SigmaFactorBS="tgtgcctatcgcacaggttttttattggacttaggtccTGTT
                     TTCttaatgttcaaaaaGGGAAAAAAAAGCTAGCAAtctgcattttttttcttttata
                     g"
                     /listShort="S141, ydaJ, ydaK"
                     /GFF_Attribute="listLong"
     CDS             460912..462000
                     /gene="epsJ"
                     /locus_tag="BSU_04270"
                     /old_locus_tag="BSU04270"
                     /function="16.13: Shape"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:15661000, 26078454, 27897378"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15661000, 26078454,
                     27897378; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase lipoprotein"
                     /protein_id="NP_388308.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04270"
                     /db_xref="EnsemblGenomes-Tr:CAB12234"
                     /db_xref="GOA:O31486"
                     /db_xref="InterPro:IPR008928"
                     /db_xref="SubtiList:BG12057"
                     /db_xref="UniProtKB/Swiss-Prot:O31486"
                     /translation="MRHVLIAVILFFLSIGLSAGCAEAGNKTQNQSATEVNASPLQPA
                     EYFIYHNLMNDKGLIKTDFSDQPSYLSESLGLWMEFLLSKNDAPHFQDQYQHLTDSFL
                     MSNHLVTWKIQNGQASGTNALIDDMRIMLSLDQAAAKWGRSDYAQTARDIGTSLKTYN
                     MNNGFFTDFYDSQAASKDVTLSYVMPDALAVLKKNGIIDEETEQRNANVLYSAPLKNG
                     FLPKTYSSETKEYTYDSEINLIDQLYAAWHLPEGDEKASVLADWIKQEFQKNGKLYGR
                     YSAYTKEPAVQYESPSVYALAVLFLTKQHENSSVIKAIYDRMNDFEIHDPVKSYYGGY
                     MSGTQTHSFDNLLPLLAERKLFNENIIQ*"
     gene            460912..462000
                     /gene="epsJ"
                     /locus_tag="BSU_04270"
                     /old_locus_tag="BSU04270"
     CDS             461981..462832
                     /gene="epsK"
                     /locus_tag="BSU_04280"
                     /old_locus_tag="BSU04280"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:23893111, 27897378"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23893111, 27897378;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-GMP receptor"
                     /protein_id="NP_388309.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04280"
                     /db_xref="EnsemblGenomes-Tr:CAB12235"
                     /db_xref="GOA:P96585"
                     /db_xref="InterPro:IPR000160"
                     /db_xref="InterPro:IPR029787"
                     /db_xref="SubtiList:BG12058"
                     /db_xref="UniProtKB/Swiss-Prot:P96585"
                     /translation="MKISFSESQKLFAYFSGLIAALSLFIYYVSAQQSEGALILCITF
                     GVIAAGIWFGPIYALAVTLIVLFVLGTLMMFFQTGQTSLFPAEEGLRMLVVWGIALLL
                     FSFISGRIHDITAELRRSMTRLQSEIKSYVAVDRVTGFDNKQRMKLELSEEIKRAERY
                     GNSFVFLLLHMHYFKEFKSLYGEKETDRLFQYVGQQIRTSVRETDKKFRPSDERIGIV
                     LTHTPAEHMPAVLTKLKKQLDTYQLENGKYVSLTFHVCYLPYRNDIQTADQFLEELEN
                     EMMMNEL*"
     gene            461981..462832
                     /gene="epsK"
                     /locus_tag="BSU_04280"
                     /old_locus_tag="BSU04280"
     CDS             462843..464552
                     /gene="ydaL"
                     /locus_tag="BSU_04290"
                     /old_locus_tag="BSU04290"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 27897378; Product type ph
                     :phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388310.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04290"
                     /db_xref="EnsemblGenomes-Tr:CAB12236"
                     /db_xref="GOA:O31487"
                     /db_xref="InterPro:IPR018763"
                     /db_xref="SubtiList:BG12059"
                     /db_xref="UniProtKB/Swiss-Prot:O31487"
                     /translation="MLCVMMLLFSAIASFPVSAQAKDQDAGILIIYSTLDGKESSQVK
                     MLDLLAGHFTSHVTVKKDSDVEASDFKGKDHVIYYGQTKRKLSQKLLSLISGVKKPVV
                     AIGYNAGQISQFSGLSLARKENVFQVHSRSEKADVSLESGLNVLSVSGLKGTALYTFK
                     ADEGTTHSFIWKTKKGNVYIGLTNLLNDNLIVAKQLREAFGEKAGTTLLYLRLEDISP
                     MSDEKLLLQAGTYLHKRHIPFILAVIPVYLNPETGDKVYLSNQPKMVKVLKKLQSMGG
                     SIIVHGYTHAYRYSETGEGFEFWDAKADQPITSGNAEDPPSILEKEQDFPNEQAYHSY
                     LEPFREKEETYTKQKLTRAIEDLTSSGLYPLAFEAPHYTMSEYGYQIASQYFTSIFGQ
                     VQLSSTTWKTSGAPPFVTAPSMLHGMTLYPETIGFVDTSKQNPLGEMEEHISQMIDFE
                     GGVAGGFYHPYLGMKYLPELVDQMERIPDSEWLDLKKTKQTVKTDKVEIHTSGDGTIQ
                     VKNGVSPIYEFFDHHRQTPLEKALWILSAVVLLFVIMFVSYTFYLRATLKKRIFKERR
                     SLG*"
     gene            462843..464552
                     /gene="ydaL"
                     /locus_tag="BSU_04290"
                     /old_locus_tag="BSU04290"
     CDS             464545..465807
                     /gene="ydaM"
                     /locus_tag="BSU_04300"
                     /old_locus_tag="BSU04300"
                     /EC_number="2.4.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 27897378, 28296273;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase associated to
                     biofilm formation"
                     /protein_id="NP_388311.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04300"
                     /db_xref="EnsemblGenomes-Tr:CAB12237"
                     /db_xref="GOA:P96587"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12060"
                     /db_xref="UniProtKB/Swiss-Prot:P96587"
                     /translation="MGNTLFFISLSLIWVMLLYHMFLMQGGFRHYMTFERNIPKWREN
                     MKELPKVSVLIPAHNEEVVIRQTLKAMVNLYYPKDRLEIIVVNDNSSDRTGDIVNEFS
                     EKYDFIKMVITKPPNAGKGKSSALNSGFAESNGDVICVYDADNTPEKMAVYYLVLGLM
                     NDEKAGAVVGKFRVINAAKTLLTRFINIETICFQWMAQGGRWKWFKIATIPGTNFAIR
                     RSIIEKLGGWDDKALAEDTELTIRVYNLGYHIRFFPAAITWEQEPETWKVWWRQRTRW
                     ARGNQYVVLKFLAQFFKLKRKRIIFDLFYFFFTYFLFFFGVIMSNAIFVVNLFYDLHL
                     SVGFLAMILWILAFFLFMTEVMITLSIEKTEMNKQNFFIVFLMYFTYSQAWIVLVIYS
                     LFVEIKHRLFKQEVKWYKTERYNQHKSG*"
     gene            464545..465807
                     /gene="ydaM"
                     /locus_tag="BSU_04300"
                     /old_locus_tag="BSU04300"
     CDS             465813..467924
                     /gene="ydaN"
                     /locus_tag="BSU_04310"
                     /old_locus_tag="BSU04310"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 27897378; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative regulator of exopolysaccharide
                     synthesis"
                     /protein_id="NP_388312.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04310"
                     /db_xref="EnsemblGenomes-Tr:CAB12238"
                     /db_xref="GOA:O31488"
                     /db_xref="InterPro:IPR008979"
                     /db_xref="InterPro:IPR018513"
                     /db_xref="SubtiList:BG12061"
                     /db_xref="UniProtKB/Swiss-Prot:O31488"
                     /translation="MKQIMIFLTSFMLLAMTGQTALAKDVQVSGSLLGKSSQEQAKQQ
                     VLTSELITLYGSKDSAELTYQIPAGASSGNQQLVIEYEASNLLISPSSLTVVIDDEPV
                     KTLKLDGDSKRKTVKLNLNKSQSAQGYHNVSLKFYGVMKEGVCVRQDTSGNWIKIYPD
                     SRLTLADSSEAKGTSLDHYPYPFAQSGNTAEETAIVIPDNPSSAEIEAAVKTEGYLKT
                     VDSSVSIAYVTESELKKIDKPTIVIGVDKHWNGKVKKLLKQAGLQAKGENLLLAERVL
                     KAEGKQQPVLFAQAASEDALTKKISVMTDQTYTGQLSGDTLSISKLQQTEKKESDKLT
                     LENFGAGDITIGADKTSSAHYFYPASAVLDENQSAKLSLKLKKSETIQASTAENESAS
                     QAAELKVMINGQPHSVRLDELGKEDKNGFYHVTVKVDPKLLQKNRYIDIQFVTTGLKE
                     NNPCNTTDEEKWVFIDKNSTLSYAIKGMSPSADFQEWPLPYAGNQDQTTLIVLPDTVS
                     QSKLEELSLVTESFGNEAQHSYTVKKSSDVTANDAKGRNLIFIGGINQFSLLKEKSSD
                     LLVPQEKNGSFDVSSFEMLNETTKQVVFTQASVWDSRYTMAVFAPSKGDGTAVTKEII
                     SYLNSNDESATVLNETNSQQVFTNHQQLKSETNSSDAEQPTQDHSQKWMYIGVLALIM
                     VVAAVFIWIAVRRKKRKTDTE*"
     gene            465813..467924
                     /gene="ydaN"
                     /locus_tag="BSU_04310"
                     /old_locus_tag="BSU04310"
     downshifts      467908
                     /Source="Nicolas_upshifts"
                     /id="D196"
                     /incds=0
                     /nref=18
                     /ntot=91
                     /MaxReadThrough="0.438479999999999"
                     /MaxDrop="4.36576"
                     /score="34.1370207"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U336"
                     /TUdmin="-4598"
                     /isTUend="FALSE"
     promotor_-35    468021..468028
                     /Source="Nicolas_upshift_promotors"
                     /id="U336"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.998001998001998"
                     /xcortree=2720
                     /SigmaFactorBS="cattttatttttttctctcagccaataagccTCTTTACAacg
                     tgcgggaacggGAGTATGATCTCTTTTAGAAaacaaatcgcttaatctgaaatcagag
                     c"
                     /listShort="NA, S142, ydaO, mutT, ydaP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    468043..468062
                     /Source="Nicolas_upshift_promotors"
                     /id="U336"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.998001998001998"
                     /xcortree=2720
                     /SigmaFactorBS="cattttatttttttctctcagccaataagccTCTTTACAacg
                     tgcgggaacggGAGTATGATCTCTTTTAGAAaacaaatcgcttaatctgaaatcagag
                     c"
                     /listShort="NA, S142, ydaO, mutT, ydaP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        468050
                     /Source="Nicolas_upshifts"
                     /id="U336"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.998001998001998"
                     /xcortree=2720
                     /SigmaFactorBS="cattttatttttttctctcagccaataagccTCTTTACAacg
                     tgcgggaacggGAGTATGATCTCTTTTAGAAaacaaatcgcttaatctgaaatcagag
                     c"
                     /listShort="NA, S142, ydaO, mutT, ydaP"
                     /GFF_Attribute="listLong"
     misc_RNA        468060..468203
                     /gene="swaO"
                     /locus_tag="BSU_misc_RNA_7"
                     /product="ATP-, cyclic di-AMP-sensing riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:15096624, 20511502, 23086297, 25086507, 25086509"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15096624, 20511502,
                     23086297, 25086507, 25086509; Product type n: RNA"
                     /function="16.3: Control"
     gene            468060..468203
                     /gene="swaO"
                     /locus_tag="BSU_misc_RNA_7"
     downshifts      468201
                     /Source="Nicolas_upshifts"
                     /id="D197"
                     /incds=0
                     /nref=10
                     /ntot=52
                     /MaxReadThrough="7.43698"
                     /MaxDrop="5.83561"
                     /score="30.4392599"
                     /energy="-14.7"
                     /TU="U336"
                     /idTUdmin="U336"
                     /TUdmin="-4305"
                     /isTUend="FALSE"
     S_feature       468246..468399
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_486278_486431"
                     /HighExp="LPhT, LBGstat, LPh, T-1.10H, T-0.40H, G135,
                     G180, T-1.40H, G150, C30"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S142"
     CDS             468400..470223
                     /gene="kimA"
                     /locus_tag="BSU_04320"
                     /old_locus_tag="BSU04320"
                     /function="16.3: Control"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15096624, 15849754, 16850406, 20511502, 25086509,
                     26789423, 28420751"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15096624, 15849754,
                     16850406, 20511502, 25086509, 26789423, 28420751; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-AMP controlled transporter of
                     potassium"
                     /protein_id="NP_388313.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04320"
                     /db_xref="EnsemblGenomes-Tr:CAB12239"
                     /db_xref="GOA:P96589"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG12062"
                     /db_xref="UniProtKB/Swiss-Prot:P96589"
                     /translation="MYHSIKRFLIGKPLKSQAAGEQKLTKLKALAMLSSDALSSVAYG
                     TEQILIILATISAAAFWYSIPIAVGVLILLLALILSYRQIIYAYPQGGGAYIVSKENL
                     GEKPGLIAGGSLLVDYILTVAVSISAGTDAITSAFPALHDYHVPIAIFLVLVIMILNL
                     RGLSESASILAYPVYLFVVALLVLIAVGLFKLMTGQIDQPAHHTSLGTPVAGITLFLL
                     LKAFSSGCSALTGVEAISNAIPAFKNPPARNAARTLAMMGILLAILFSGITVLAYGYG
                     TAPKPDETVVSQIASETFGRNVFYYVIQGVTSLILVLAANTGFSAFPQLAFNLARDQY
                     MPRMFTVRGDRLGFSNGIIFLGFASIVLIILFGGQTEHLIPLYAVGVFIPFTLSQTGM
                     CMKWIKQKPKGWIGKMLINSCGALISFMVLSILFVTKFNVVWPVLIFMPIVVLLFFAI
                     KNHYTAVGEQLRIVDKEPEEIKGTVVIVPVAGVTTVVQKSIHYAKSLSDQVIAVHVSF
                     DREQEKKFEKRWEELNNGVRLVTLHSSYRSLVHPFDKFLETVEAKAKKEQFSVMVLFP
                     QFITKKRWHTILHNQSAFLLRVRLFWKKDIMVATLPYHFKK*"
     gene            468400..470223
                     /gene="kimA"
                     /locus_tag="BSU_04320"
                     /old_locus_tag="BSU04320"
     downshifts      470215
                     /Source="Nicolas_upshifts"
                     /id="D198"
                     /incds=0
                     /nref=50
                     /ntot=181
                     /MaxReadThrough="3.55206"
                     /MaxDrop="4.7232"
                     /score="6.00201196"
                     /energy="-13.9"
                     /TU="U336"
                     /idTUdmin="U336"
                     /TUdmin="-2291"
                     /isTUend="FALSE"
     CDS             470282..470731
                     /gene="nudT"
                     /locus_tag="BSU_04330"
                     /old_locus_tag="BSU04330"
                     /EC_number="3.6.1.-"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15576788, 16513759;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NTP pyrophosphohydrolase"
                     /protein_id="NP_388314.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04330"
                     /db_xref="EnsemblGenomes-Tr:CAB12240"
                     /db_xref="GOA:P96590"
                     /db_xref="InterPro:IPR000086"
                     /db_xref="InterPro:IPR015797"
                     /db_xref="InterPro:IPR020084"
                     /db_xref="InterPro:IPR020476"
                     /db_xref="SubtiList:BG11956"
                     /db_xref="UniProtKB/Swiss-Prot:P96590"
                     /translation="MYTQGAFVIVLNESQQILLVKRKDVPLWDLPGGRVDPGESAEEA
                     AVREILEETGYNAALSAKIGVYQRPKFQDEQHLFFGSITGGQAMADGTETAGLKWVSP
                     GRLPLFMVPNRKRQINDFKNGAQDVNVTVKDSGLLAAIDLLKRRLGK*"
     gene            470282..470731
                     /gene="nudT"
                     /locus_tag="BSU_04330"
                     /old_locus_tag="BSU04330"
     promotor_-35    470744..470750
                     /Source="Nicolas_upshift_promotors"
                     /id="U337"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=192
                     /SigmaFactorBS="tgttgaaaagaagactgggcaagtgattcaggtctccgGGTT
                     TTAaagcctttctcctgTGGTATTGAAAAAAGGAAAaaggaggatacgttatggcaca
                     c"
                     /listShort="ydaP, S145"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    470765..470783
                     /Source="Nicolas_upshift_promotors"
                     /id="U337"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=192
                     /SigmaFactorBS="tgttgaaaagaagactgggcaagtgattcaggtctccgGGTT
                     TTAaagcctttctcctgTGGTATTGAAAAAAGGAAAaaggaggatacgttatggcaca
                     c"
                     /listShort="ydaP, S145"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        470766
                     /Source="Nicolas_upshifts"
                     /id="U337"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=192
                     /SigmaFactorBS="tgttgaaaagaagactgggcaagtgattcaggtctccgGGTT
                     TTAaagcctttctcctgTGGTATTGAAAAAAGGAAAaaggaggatacgttatggcaca
                     c"
                     /listShort="ydaP, S145"
                     /GFF_Attribute="listLong"
     CDS             470798..472522
                     /gene="poxB"
                     /locus_tag="BSU_04340"
                     /old_locus_tag="BSU04340"
                     /EC_number="1.2.3.3"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16291680, 16513748,
                     10220166, 23611909; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-phosphate generating pyruvate oxidase"
                     /protein_id="NP_388315.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04340"
                     /db_xref="EnsemblGenomes-Tr:CAB12241"
                     /db_xref="GOA:P96591"
                     /db_xref="InterPro:IPR000399"
                     /db_xref="InterPro:IPR011766"
                     /db_xref="InterPro:IPR012000"
                     /db_xref="InterPro:IPR012001"
                     /db_xref="InterPro:IPR029035"
                     /db_xref="InterPro:IPR029061"
                     /db_xref="SubtiList:BG12063"
                     /db_xref="UniProtKB/Swiss-Prot:P96591"
                     /translation="MAHKTAGQAMTELLEQWGVDHVYGIPGDSINEFIEELRHERNQL
                     KFIQTRHEEVAALAAAAEAKLTGKIGVCLSIAGPGAVHLLNGLYDAKADGAPVLAIAG
                     QVSSGEVGRDYFQEIKLEQMFEDVAVFNREVHSAESLPDLLNQAIRTAYSKKGVAVLS
                     VSDDLFAEKIKREPVYTSPVYIEGNLEPKKEQLVTCAQYINNAKKPIILAGQGMKKAK
                     RELLEFADKAAAPIVVTLPAKGVVPDKHPHFLGNLGQIGTKPAYEAMEECDLLIMLGT
                     SFPYRDYLPDDTPAIQLDSDPAKIGKRYPVTAGLVCDSALGLRELTEYIERKEDRRFL
                     NACTEHMQHWWNEIEKDETEATTPLKPQQVVARLQEAAADDAVLSVDVGTVTVWMARH
                     FKMNANQDFIVSSWLATMGCGLPGAIAASLSEPERQAIAVCGDGGFSMVMQDLPTAVK
                     YKLPITVVILNNENLGMIEYEQQVKGNIDYVTKLQNVDYAAFAESCGAKGIKVTKAEE
                     LAPAFHEALHSDQPVVVDVMIGNEPPLPGKITYGQAKGFSKYMLKNFFENQKFEMPSL
                     KKSLKRLF*"
     gene            470798..472522
                     /gene="poxB"
                     /locus_tag="BSU_04340"
                     /old_locus_tag="BSU04340"
     S_feature       complement(471634..472493)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_489666_490525_c"
                     /HighExp="H2O2, Paraq, G180, G150, Oxctl, Diami, dia15,
                     G135, C30, dia5"
                     /AntisenseName="ydaP"
                     /AntisenseCor="-5.0529608261635599E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigA"
                     /TUshortPSig="0.113, 1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S143"
     S_feature       complement(472495..472606)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_490527_490638_c"
                     /HighExp="dia5, M0t45, S0, S2, S1, Paraq, GM 120, Lbstat,
                     MG 5, UNK1"
                     /AntisenseName="ydaP"
                     /AntisenseCor="1.7026698118644101E-2"
                     /AntisenseRegPval="-0.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigA"
                     /TUshortPSig="0.113, 1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S144"
     downshifts      472506
                     /Source="Nicolas_upshifts"
                     /id="D199"
                     /incds=0
                     /nref=50
                     /ntot=166
                     /MaxReadThrough="5.18566"
                     /MaxDrop="6.66568"
                     /score="7.55338633"
                     /energy="-5.3"
                     /TU="U337"
                     /idTUdmin="U336"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(472514..472717)
                     /locus_tag="BSU_04345"
                     /old_locus_tag="BSU04345"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513943.1"
                     /translation="MIRISMQGQMHLPLKQDAFVLLSVSSMAKSVPNTYTDHFMNSNM
                     LKIHLFPKKKKKTRALRAPVFLK*"
     gene            complement(472514..472717)
                     /locus_tag="BSU_04345"
                     /old_locus_tag="BSU04345"
     downshifts      complement(472538)
                     /Source="Nicolas_upshifts"
                     /id="D200"
                     /incds=0
                     /nref=5
                     /ntot=55
                     /MaxReadThrough="4.75809"
                     /MaxDrop="8.06239"
                     /score="11.2659249"
                     /energy="-9.1"
                     /TU="U338,U340,U341"
                     /idTUdmin="U338"
                     /TUdmin="-110"
                     /isTUend="FALSE"
     promotor_no_box complement(472566..472666)
                     /Source="Nicolas_upshift_promotors"
                     /id="U338"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.445554445554446"
                     /psig="0.112887112887113"
                     /xcortree=1496
                     /SigmaFactorBS="gcatttgtccttttgtctgtttcgagtatggcgaaatcagtt
                     cctaatacatataccgatcattttatgaattcaaacatgctgaaaatacatttgtttc
                     c"
                     /listShort="S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     promotor_-35    472575..472580
                     /Source="Nicolas_upshift_promotors"
                     /id="U339"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.914085914085914"
                     /psig="0.914085914085914"
                     /xcortree=1216
                     /SigmaFactorBS="tgtttttttttttttttttggaaacaaaTGTATTttcagcat
                     gtttgaatTCATAAAATGATCGGTATAtgtattaggaactgatttcgccatactcgaa
                     a"
                     /listShort="S145"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    472597..472615
                     /Source="Nicolas_upshift_promotors"
                     /id="U339"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.914085914085914"
                     /psig="0.914085914085914"
                     /xcortree=1216
                     /SigmaFactorBS="tgtttttttttttttttttggaaacaaaTGTATTttcagcat
                     gtttgaatTCATAAAATGATCGGTATAtgtattaggaactgatttcgccatactcgaa
                     a"
                     /listShort="S145"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(472606)
                     /Source="Nicolas_upshifts"
                     /id="U338"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.445554445554446"
                     /psig="0.112887112887113"
                     /xcortree=1496
                     /SigmaFactorBS="gcatttgtccttttgtctgtttcgagtatggcgaaatcagtt
                     cctaatacatataccgatcattttatgaattcaaacatgctgaaaatacatttgtttc
                     c"
                     /listShort="S144, S143"
                     /GFF_Attribute="listLong"
     S_feature       472607..472822
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_490639_490854"
                     /HighExp="Etha, S4, S8, S5, C30, S7, B60, S6, Salt, B36"
                     /AntisenseName="ydzK"
                     /AntisenseCor="3.8830946787094797E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigB"
                     /TUshortPSig="0.914, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S145"
     upshifts        472607
                     /Source="Nicolas_upshifts"
                     /id="U339"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.914085914085914"
                     /psig="0.914085914085914"
                     /xcortree=1216
                     /SigmaFactorBS="tgtttttttttttttttttggaaacaaaTGTATTttcagcat
                     gtttgaatTCATAAAATGATCGGTATAtgtattaggaactgatttcgccatactcgaa
                     a"
                     /listShort="S145"
                     /GFF_Attribute="listLong"
     S_feature       complement(472673..472744)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_490705_490776_c"
                     /HighExp="Sw, B60, dia15, dia5, BI, Etha, BC, M9-stat,
                     C90, M0t45"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S146"
     downshifts      complement(472716)
                     /Source="Nicolas_upshifts"
                     /id="D201"
                     /incds=0
                     /nref=21
                     /ntot=191
                     /MaxReadThrough="5.39949"
                     /MaxDrop="5.81865"
                     /score="3.34912028"
                     /energy="-20.3"
                     /TU="U340,U341"
                     /idTUdmin="U343"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(472745..473011)
                     /gene="ydzK"
                     /locus_tag="BSU_04359"
                     /old_locus_tag="BSU04359"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="YP_003097680.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04359"
                     /db_xref="EnsemblGenomes-Tr:CAX52551"
                     /db_xref="GOA:C0H3V4"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V4"
                     /translation="MSVFILFYLWIVPIVIGILCSVAAHKSKGKMRVAPGIAMIVLSI
                     ISLITAFTAGHTNFHVFIGGMFLFGTFLVGSAFPFFFGLKKKEK*"
     gene            complement(472745..473011)
                     /gene="ydzK"
                     /locus_tag="BSU_04359"
                     /old_locus_tag="BSU04359"
     promotor_-10    complement(473027..473046)
                     /Source="Nicolas_upshift_promotors"
                     /id="U340"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.637362637362637"
                     /psig=1
                     /xcortree=2076
                     /SigmaFactorBS="cttctaaagccggtttttatttttccgcaaaagctcattgAT
                     ACCCTTtttgacagaaaTTTGTTATGATAGAAGAAAAatcggagttttgatgatgtca
                     g"
                     /listShort="ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(473045)
                     /Source="Nicolas_upshifts"
                     /id="U340"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.637362637362637"
                     /psig=1
                     /xcortree=2076
                     /SigmaFactorBS="cttctaaagccggtttttatttttccgcaaaagctcattgAT
                     ACCCTTtttgacagaaaTTTGTTATGATAGAAGAAAAatcggagttttgatgatgtca
                     g"
                     /listShort="ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(473058..473065)
                     /Source="Nicolas_upshift_promotors"
                     /id="U340"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.637362637362637"
                     /psig=1
                     /xcortree=2076
                     /SigmaFactorBS="cttctaaagccggtttttatttttccgcaaaagctcattgAT
                     ACCCTTtttgacagaaaTTTGTTATGATAGAAGAAAAatcggagttttgatgatgtca
                     g"
                     /listShort="ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(473115..474392)
                     /gene="mntH"
                     /locus_tag="BSU_04360"
                     /old_locus_tag="BSU04360"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12029030, 12950915, 14580210, 15849754, 16850406,
                     27573840, 27748968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12029030, 12950915,
                     14580210, 15849754, 16850406, 27573840, 27748968; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proton-coupled manganese transporter"
                     /protein_id="NP_388317.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04360"
                     /db_xref="EnsemblGenomes-Tr:CAB12243"
                     /db_xref="GOA:P96593"
                     /db_xref="InterPro:IPR001046"
                     /db_xref="SubtiList:BG12065"
                     /db_xref="UniProtKB/Swiss-Prot:P96593"
                     /translation="MMNKDITAQSPRSKAVQDALDGKIRGFRGLLPFLGPAFIAAIAY
                     IDPGNFATNISAGSKYGYMLLWVILFSNIMALLIQSLSAKLGIATGKNLPEVAREEFP
                     KPVSIGLWIQGELVIIATDLAEFIGAALGLYLLFGIPMLEASIIAAIGSFAILELQRR
                     GYRSLEAGIAGMLFVVVIAFALQTFFAKPDAVSVMKGLFVPAFHGTDSVLLAAGILGA
                     TVMPHAIYLHSALTQRRVVGKTDAERKKIFRFEFIDILIAMLIAGAINASMLIVAAAL
                     FFKNGLFVEDLDVAFQQFGHLVSPMSAALFGIGLLVAGLSSSSVGTLSGDVIMQGFIN
                     YRIPLYVRRFITIIPPILIIASGVNPTTALVLSQVVLSFGIAFALIPLIMFTSNKRIM
                     GSLINAKWITVVSWLIAVLIVALNVFLIVDTFR*"
     gene            complement(473115..474392)
                     /gene="mntH"
                     /locus_tag="BSU_04360"
                     /old_locus_tag="BSU04360"
     downshifts      complement(473134)
                     /Source="Nicolas_upshifts"
                     /id="D202"
                     /incds=0
                     /nref=170
                     /ntot=242
                     /MaxReadThrough="5.8826"
                     /MaxDrop="4.8109"
                     /score="28.3182556"
                     /energy="-9.6"
                     /TU="U341,U343"
                     /idTUdmin="U342"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(474454..474473)
                     /Source="Nicolas_upshift_promotors"
                     /id="U341"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig=1
                     /xcortree=1525
                     /SigmaFactorBS="ggaaaaattcagaagtgtattttgaacattttcGGTTGACAa
                     gaaaccgggatGGTCATATGATGTAGATAAAataatttgccttaaggaaactctttgt
                     t"
                     /listShort="mntH, ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(474466)
                     /Source="Nicolas_upshifts"
                     /id="U341"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig=1
                     /xcortree=1525
                     /SigmaFactorBS="ggaaaaattcagaagtgtattttgaacattttcGGTTGACAa
                     gaaaccgggatGGTCATATGATGTAGATAAAataatttgccttaaggaaactctttgt
                     t"
                     /listShort="mntH, ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
     S_feature       complement(474468..474545)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_492500_492577_c"
                     /HighExp="S6, S8, S7, Etha, S5, Salt, BT, Heat, B36, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigB"
                     /TUshortPSig="1, 0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S147"
     promotor_-35    complement(474486..474493)
                     /Source="Nicolas_upshift_promotors"
                     /id="U341"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig=1
                     /xcortree=1525
                     /SigmaFactorBS="ggaaaaattcagaagtgtattttgaacattttcGGTTGACAa
                     gaaaccgggatGGTCATATGATGTAGATAAAataatttgccttaaggaaactctttgt
                     t"
                     /listShort="mntH, ydzK, S146, S144, S143"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(474529..474548)
                     /Source="Nicolas_upshift_promotors"
                     /id="U342"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1312
                     /SigmaFactorBS="aggcatcgtttcgaaatgaaacgatgtctttttaTATGGGAC
                     CTtatcacgaatcccTACATATCATGTTACATAACagggaaaaattcagaagtgtatt
                     t"
                     /listShort="S147, mntH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(474545)
                     /Source="Nicolas_upshifts"
                     /id="U342"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1312
                     /SigmaFactorBS="aggcatcgtttcgaaatgaaacgatgtctttttaTATGGGAC
                     CTtatcacgaatcccTACATATCATGTTACATAACagggaaaaattcagaagtgtatt
                     t"
                     /listShort="S147, mntH"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(474562..474571)
                     /Source="Nicolas_upshift_promotors"
                     /id="U342"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1312
                     /SigmaFactorBS="aggcatcgtttcgaaatgaaacgatgtctttttaTATGGGAC
                     CTtatcacgaatcccTACATATCATGTTACATAACagggaaaaattcagaagtgtatt
                     t"
                     /listShort="S147, mntH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(474622..474879)
                     /gene="ydaS"
                     /locus_tag="BSU_04370"
                     /old_locus_tag="BSU04370"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388318.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04370"
                     /db_xref="EnsemblGenomes-Tr:CAB12244"
                     /db_xref="GOA:P96594"
                     /db_xref="InterPro:IPR007341"
                     /db_xref="SubtiList:BG12066"
                     /db_xref="UniProtKB/Swiss-Prot:P96594"
                     /translation="MLSFLVSLVVAIVIGLIGSAIVGNRLPGGIFGSMIAGLIGAWIG
                     HGLLGTWGPSLAGFAIFPAIIGAAIFVFLLGLIFRGLRKEA*"
     gene            complement(474622..474879)
                     /gene="ydaS"
                     /locus_tag="BSU_04370"
                     /old_locus_tag="BSU04370"
     downshifts      complement(474630)
                     /Source="Nicolas_upshifts"
                     /id="D203"
                     /incds=0
                     /nref=7
                     /ntot=33
                     /MaxReadThrough="4.70076"
                     /MaxDrop="4.7213"
                     /score="7.04635537"
                     /energy="-13.4"
                     /TU="U343"
                     /idTUdmin="U342"
                     /TUdmin="-1496"
                     /isTUend="FALSE"
     downshifts      complement(474696)
                     /Source="Nicolas_upshifts"
                     /id="D204"
                     /incds=1
                     /nref=2
                     /ntot=69
                     /MaxReadThrough="7.55545"
                     /MaxDrop="2.8244"
                     /score="7.04635537"
                     /energy="-13.4"
                     /TU="U343"
                     /idTUdmin="U342"
                     /TUdmin="-1562"
                     /isTUend="FALSE"
     CDS             complement(474957..475409)
                     /gene="ydaT"
                     /locus_tag="BSU_04380"
                     /old_locus_tag="BSU04380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388319.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04380"
                     /db_xref="EnsemblGenomes-Tr:CAB12245"
                     /db_xref="InterPro:IPR018691"
                     /db_xref="SubtiList:BG12067"
                     /db_xref="UniProtKB/Swiss-Prot:P96595"
                     /translation="MPWSMKDYPASLKNLEKPVRKKAIDIANAMIDEGYEEGRAIPIA
                     TSKAKEWAENASTDEIDDFLTHDDETERDADPSSGSGPELMNKAEHVIKHKKGWAVKA
                     EGAKRVSEIKDTKKEAIERAKEIAAHKGTEVIVHLADGSVQRKIKTGS*"
     gene            complement(474957..475409)
                     /gene="ydaT"
                     /locus_tag="BSU_04380"
                     /old_locus_tag="BSU04380"
     promotor_-10    complement(475428..475446)
                     /Source="Nicolas_upshift_promotors"
                     /id="U343"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=230
                     /SigmaFactorBS="ttttttctactatatagtataccttcattttttcggatgCGT
                     TTTTatttttcacctgcGGGTACCATTTTTATAAAAggaaaaggagtgatagacatgc
                     c"
                     /listShort="ydaT, ydaS, S147, mntH, ydzK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(475445)
                     /Source="Nicolas_upshifts"
                     /id="U343"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=230
                     /SigmaFactorBS="ttttttctactatatagtataccttcattttttcggatgCGT
                     TTTTatttttcacctgcGGGTACCATTTTTATAAAAggaaaaggagtgatagacatgc
                     c"
                     /listShort="ydaT, ydaS, S147, mntH, ydzK"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(475460..475466)
                     /Source="Nicolas_upshift_promotors"
                     /id="U343"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=230
                     /SigmaFactorBS="ttttttctactatatagtataccttcattttttcggatgCGT
                     TTTTatttttcacctgcGGGTACCATTTTTATAAAAggaaaaggagtgatagacatgc
                     c"
                     /listShort="ydaT, ydaS, S147, mntH, ydzK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        475478
                     /Source="Nicolas_upshifts"
                     /id="U344"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig="0.993006993006993"
                     /xcortree=2375
                     /SigmaFactorBS="ctccttttccttttataaaaatggtacccgcaggtgaaaaat
                     aaaaacgcatccgaaaaaatgaaggtATACTATATAGTAGAAAAAAcggaagggaagt
                     g"
                     /listShort="ydbA"
                     /GFF_Attribute="listLong"
     misc_feature    475486..475505
                     /Source="Nicolas_upshift_promotors"
                     /id="U344"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.795204795204795"
                     /psig="0.993006993006993"
                     /xcortree=2375
                     /SigmaFactorBS="ctccttttccttttataaaaatggtacccgcaggtgaaaaat
                     aaaaacgcatccgaaaaaatgaaggtATACTATATAGTAGAAAAAAcggaagggaagt
                     g"
                     /listShort="ydbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             475527..476345
                     /gene="ydbA"
                     /locus_tag="BSU_04390"
                     /old_locus_tag="BSU04390"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388320.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04390"
                     /db_xref="EnsemblGenomes-Tr:CAB12246"
                     /db_xref="InterPro:IPR024787"
                     /db_xref="SubtiList:BG12068"
                     /db_xref="UniProtKB/Swiss-Prot:P96596"
                     /translation="MPTERKEDLHQQLKEIEKWEKDQQKVWFWEKLSRLPFQLLDKLT
                     PEFIQKKIGKLLDEVGSFVQTGGQYLTSEKQIIRMFQKKLPEEIFESLEDIRKAPLPV
                     MDEIAEGMGKNRTNAATVQGATTGVGGVFTLAADIPAVLGLSLKTLQDIAVAYGYDPK
                     EKKERVFIVKCLQLTSADVVGKRSILQELKHYDQDRTYKNVASQIQGWREVVLGYRDT
                     FGWKKLFQIVPVAGMVFGAAANRSTLNDITETGMMLYKKRRILERLKETEREME*"
     gene            475527..476345
                     /gene="ydbA"
                     /locus_tag="BSU_04390"
                     /old_locus_tag="BSU04390"
     downshifts      476336
                     /Source="Nicolas_upshifts"
                     /id="D205"
                     /incds=0
                     /nref=118
                     /ntot=223
                     /MaxReadThrough="0.66117"
                     /MaxDrop="4.41502"
                     /score="5.38936313"
                     /energy="-9.2"
                     /TU="NA"
                     /idTUdmin="U344"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    476413..476419
                     /Source="Nicolas_upshift_promotors"
                     /id="U345"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=219
                     /SigmaFactorBS="ttttagtggaaacatacccaatgtgttttgttTGTTTAAaag
                     aattgtgagcGGGAATACAACAACCAACAccaattaaaggaggaattcaaaatggcag
                     a"
                     /listShort="gsiB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    476433..476451
                     /Source="Nicolas_upshift_promotors"
                     /id="U345"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=219
                     /SigmaFactorBS="ttttagtggaaacatacccaatgtgttttgttTGTTTAAaag
                     aattgtgagcGGGAATACAACAACCAACAccaattaaaggaggaattcaaaatggcag
                     a"
                     /listShort="gsiB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        476441
                     /Source="Nicolas_upshifts"
                     /id="U345"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=219
                     /SigmaFactorBS="ttttagtggaaacatacccaatgtgttttgttTGTTTAAaag
                     aattgtgagcGGGAATACAACAACCAACAccaattaaaggaggaattcaaaatggcag
                     a"
                     /listShort="gsiB"
                     /GFF_Attribute="listLong"
     CDS             476474..476845
                     /gene="gsiB"
                     /locus_tag="BSU_04400"
                     /old_locus_tag="BSU04400"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7651322, 9669336, 9763714, 12562800, 21421783"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7651322, 9669336,
                     9763714, 12562800, 21421783; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein glucose starvation
                     induced"
                     /protein_id="NP_388321.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04400"
                     /db_xref="EnsemblGenomes-Tr:CAB12247"
                     /db_xref="InterPro:IPR019626"
                     /db_xref="SubtiList:BG10826"
                     /db_xref="UniProtKB/Swiss-Prot:P26907"
                     /translation="MADNNKMSREEAGRKGGETTSKNHDKEFYQEIGQKGGEATSKNH
                     DKEFYQEIGEKGGEATSKNHDKEFYQEIGEKGGEATSENHDKEFYQEIGRKGGEATSK
                     NHDKEFYQEIGSKGGNARNND*"
     gene            476474..476845
                     /gene="gsiB"
                     /locus_tag="BSU_04400"
                     /old_locus_tag="BSU04400"
     downshifts      complement(476478)
                     /Source="Nicolas_upshifts"
                     /id="D206"
                     /incds=0
                     /nref=1
                     /ntot=25
                     /MaxReadThrough="1.50212"
                     /MaxDrop="4.6705"
                     /score="-7.76438364"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U346"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      476862
                     /Source="Nicolas_upshifts"
                     /id="D207"
                     /incds=0
                     /nref=153
                     /ntot=219
                     /MaxReadThrough="3.75525"
                     /MaxDrop="8.3301"
                     /score="39.7307477"
                     /energy="-16.6"
                     /TU="U345"
                     /idTUdmin="U345"
                     /TUdmin="-24"
                     /isTUend="FALSE"
     upshifts        complement(476896)
                     /Source="Nicolas_upshifts"
                     /id="U346"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.00899100899100899"
                     /xcortree=120
                     /SigmaFactorBS="cttattgtatctcaatagcggcataaattgagaagattccaa
                     aaaaaagcgatcCAGCtgatgtgccggatcgcttttttatttacaggttgtctgcctt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    complement(476899..476902)
                     /Source="Nicolas_upshift_promotors"
                     /id="U346"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.738261738261738"
                     /psig="0.00899100899100899"
                     /xcortree=120
                     /SigmaFactorBS="cttattgtatctcaatagcggcataaattgagaagattccaa
                     aaaaaagcgatcCAGCtgatgtgccggatcgcttttttatttacaggttgtctgcctt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-35    476924..476931
                     /Source="Nicolas_upshift_promotors"
                     /id="U347"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2941
                     /SigmaFactorBS="ggcacatcagctggatcgcttttttttggaatctTCTCAATT
                     tatgccgctatTGAGATACAATAAGTGAAAAaggggttttcgctaatgtccaagatgc
                     a"
                     /listShort="ydbB, ydbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    476943..476962
                     /Source="Nicolas_upshift_promotors"
                     /id="U347"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2941
                     /SigmaFactorBS="ggcacatcagctggatcgcttttttttggaatctTCTCAATT
                     tatgccgctatTGAGATACAATAAGTGAAAAaggggttttcgctaatgtccaagatgc
                     a"
                     /listShort="ydbB, ydbC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        476950
                     /Source="Nicolas_upshifts"
                     /id="U347"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2941
                     /SigmaFactorBS="ggcacatcagctggatcgcttttttttggaatctTCTCAATT
                     tatgccgctatTGAGATACAATAAGTGAAAAaggggttttcgctaatgtccaagatgc
                     a"
                     /listShort="ydbB, ydbC"
                     /GFF_Attribute="listLong"
     CDS             476977..477318
                     /gene="ydbB"
                     /locus_tag="BSU_04410"
                     /old_locus_tag="BSU04410"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10704478; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme; cupin family"
                     /protein_id="NP_388322.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04410"
                     /db_xref="EnsemblGenomes-Tr:CAB12248"
                     /db_xref="GOA:P96597"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR013096"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR019780"
                     /db_xref="SubtiList:BG12069"
                     /db_xref="UniProtKB/Swiss-Prot:P96597"
                     /translation="MSKMQNLLAIANEVKEKHANFSISEVNDHCVRLAVFTGEYDWHH
                     HPDSDELFIVLEGELLIDFKDKETAVLKANDSLLIPKGTVHRTRSYVRTVNLCVEHKQ
                     AETVIIEEQPC*"
     gene            476977..477318
                     /gene="ydbB"
                     /locus_tag="BSU_04410"
                     /old_locus_tag="BSU04410"
     CDS             477312..477671
                     /gene="ydbC"
                     /locus_tag="BSU_04420"
                     /old_locus_tag="BSU04420"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388323.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04420"
                     /db_xref="EnsemblGenomes-Tr:CAB12249"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR032555"
                     /db_xref="SubtiList:BG12070"
                     /db_xref="UniProtKB/Swiss-Prot:P96598"
                     /translation="MLIKKMICEVDAANAEAFAKAQSQWEALSHISGFIKQAGGWRKT
                     IDEPLTAEIISVWENREAYDHFMENEHDSIYEENDQKAVILSIEVTVYEEDKPFVHDL
                     LHNPDIRYEPNWTVLKA*"
     gene            477312..477671
                     /gene="ydbC"
                     /locus_tag="BSU_04420"
                     /old_locus_tag="BSU04420"
     S_feature       complement(477374..477667)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_495406_495699_c"
                     /HighExp="Etha, Salt, M9-stat, C30, Heat, Sw, B60, S8,
                     C90, UNK1"
                     /AntisenseName="ydbC"
                     /AntisenseCor="0.16172626521480701"
                     /AntisenseRegPval="-2.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S148"
     downshifts      477612
                     /Source="Nicolas_upshifts"
                     /id="D208"
                     /incds=0
                     /nref=2
                     /ntot=130
                     /MaxReadThrough="1.8663"
                     /MaxDrop="2.67081"
                     /score="39.7307477"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U347"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      477656
                     /Source="Nicolas_upshifts"
                     /id="D209"
                     /incds=0
                     /nref=1
                     /ntot=28
                     /MaxReadThrough="0.252220000000001"
                     /MaxDrop="2.61185"
                     /score="39.7307477"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U347"
                     /TUdmin=44
                     /isTUend="FALSE"
     CDS             complement(477708..478529)
                     /gene="ydbD"
                     /locus_tag="BSU_04430"
                     /old_locus_tag="BSU04430"
                     /EC_number="1.11.1.6"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15231799; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative manganese-containing catalase"
                     /protein_id="NP_388324.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04430"
                     /db_xref="EnsemblGenomes-Tr:CAB12250"
                     /db_xref="GOA:P80878"
                     /db_xref="InterPro:IPR007760"
                     /db_xref="InterPro:IPR009078"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="InterPro:IPR027407"
                     /db_xref="SubtiList:BG12071"
                     /db_xref="UniProtKB/Swiss-Prot:P80878"
                     /translation="MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLF
                     QGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARLLEDAPLDQQEKAAEDPVIGSIL
                     GGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF
                     EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQL
                     INFSEGEVSAEQNWLNEKAPDGEAFEYVKEAKTFGEKPELKPAPPFVHNTLPGRE*"
     gene            complement(477708..478529)
                     /gene="ydbD"
                     /locus_tag="BSU_04430"
                     /old_locus_tag="BSU04430"
     downshifts      complement(477712)
                     /Source="Nicolas_upshifts"
                     /id="D210"
                     /incds=0
                     /nref=62
                     /ntot=214
                     /MaxReadThrough="4.23505"
                     /MaxDrop="6.82771"
                     /score="-6.55917314"
                     /energy="-13.1"
                     /TU="U348"
                     /idTUdmin="U348"
                     /TUdmin="-310"
                     /isTUend="FALSE"
     promotor_-10    complement(478551..478569)
                     /Source="Nicolas_upshift_promotors"
                     /id="U348"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=193
                     /SigmaFactorBS="gctgcgaaaagattcatagttcccatctcgatacgctgtttt
                     tCGTTTATctttctatcgatcGGAAATATAAAAAGAGATAaacgaaaaaggagatggg
                     t"
                     /listShort="ydbD, S148"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(478572)
                     /Source="Nicolas_upshifts"
                     /id="U348"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=193
                     /SigmaFactorBS="gctgcgaaaagattcatagttcccatctcgatacgctgtttt
                     tCGTTTATctttctatcgatcGGAAATATAAAAAGAGATAaacgaaaaaggagatggg
                     t"
                     /listShort="ydbD, S148"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(478583..478589)
                     /Source="Nicolas_upshift_promotors"
                     /id="U348"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=193
                     /SigmaFactorBS="gctgcgaaaagattcatagttcccatctcgatacgctgtttt
                     tCGTTTATctttctatcgatcGGAAATATAAAAAGAGATAaacgaaaaaggagatggg
                     t"
                     /listShort="ydbD, S148"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(478614..479666)
                     /gene="dctB"
                     /locus_tag="BSU_04440"
                     /old_locus_tag="BSU04440"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:1809844, 10708364, 11566984, 24375102"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1809844, 10708364,
                     11566984, 24375102; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane bound C4-dicarboxylate binding sensor
                     protein"
                     /protein_id="NP_388325.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04440"
                     /db_xref="EnsemblGenomes-Tr:CAB12251"
                     /db_xref="GOA:P96600"
                     /db_xref="InterPro:IPR004682"
                     /db_xref="InterPro:IPR018389"
                     /db_xref="SubtiList:BG12072"
                     /db_xref="UniProtKB/Swiss-Prot:P96600"
                     /translation="MKSLLACLALMIAGIATALFIGFHDHTGNKKIVYDDDQEGLQDQ
                     IVFKFSHVVAENTPKGLAANKFADLVNEKSGGKIKIEVFPNGSLYSDIEEIEALQNGD
                     VQFIAPSTSKLGMLSPEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLA
                     YWTNGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLL
                     ENNVVDGEENTISNIYSKKFYNVQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILT
                     EAMKETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEWMKRLDPVYRQYEPI
                     FGRELIRELLELRKDS*"
     gene            complement(478614..479666)
                     /gene="dctB"
                     /locus_tag="BSU_04440"
                     /old_locus_tag="BSU04440"
     promotor_-35    478926..478933
                     /Source="Nicolas_upshift_promotors"
                     /id="U349"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=1811
                     /SigmaFactorBS="cagtcatgacagcgtagccgagataaccgtggctgctTATTG
                     TCAaatagtcctgaacaTTATAAAATTTTTTAGAATAgatgtttgaaattgtattttc
                     t"
                     /listShort="S149, dctS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       478948..479735
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_496980_497767"
                     /HighExp="LBGstat, Diami, T-0.40H, T0.0H, T0.30H, Heat,
                     UNK1, GM-0.1, MG 90, Fru"
                     /AntisenseName="dctB"
                     /AntisenseCor="0.64205060306327899"
                     /AntisenseRegPval="-31.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S149"
     promotor_-10    478948..478967
                     /Source="Nicolas_upshift_promotors"
                     /id="U349"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=1811
                     /SigmaFactorBS="cagtcatgacagcgtagccgagataaccgtggctgctTATTG
                     TCAaatagtcctgaacaTTATAAAATTTTTTAGAATAgatgtttgaaattgtattttc
                     t"
                     /listShort="S149, dctS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        478949
                     /Source="Nicolas_upshifts"
                     /id="U349"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=1811
                     /SigmaFactorBS="cagtcatgacagcgtagccgagataaccgtggctgctTATTG
                     TCAaatagtcctgaacaTTATAAAATTTTTTAGAATAgatgtttgaaattgtattttc
                     t"
                     /listShort="S149, dctS"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(479679..479698)
                     /Source="Nicolas_upshift_promotors"
                     /id="U350"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig="0.937062937062937"
                     /xcortree=1551
                     /SigmaFactorBS="tttgttcatcagcttctcctttcagGTCTTTACgaatgtcat
                     agccCCCATTATCCTTAACATAGGggagggcttttcatgaagagtttgcttgcatgtc
                     t"
                     /listShort="dctB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(479684)
                     /Source="Nicolas_upshifts"
                     /id="U350"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig="0.937062937062937"
                     /xcortree=1551
                     /SigmaFactorBS="tttgttcatcagcttctcctttcagGTCTTTACgaatgtcat
                     agccCCCATTATCCTTAACATAGGggagggcttttcatgaagagtttgcttgcatgtc
                     t"
                     /listShort="dctB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(479712..479719)
                     /Source="Nicolas_upshift_promotors"
                     /id="U350"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig="0.937062937062937"
                     /xcortree=1551
                     /SigmaFactorBS="tttgttcatcagcttctcctttcagGTCTTTACgaatgtcat
                     agccCCCATTATCCTTAACATAGGggagggcttttcatgaagagtttgcttgcatgtc
                     t"
                     /listShort="dctB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             479736..481343
                     /gene="dctS"
                     /locus_tag="BSU_04450"
                     /old_locus_tag="BSU04450"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:10627041, 11717295, 1290636, 12949159, 24375102"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10627041, 11717295,
                     1290636, 12949159, 24375102; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="NP_388326.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04450"
                     /db_xref="EnsemblGenomes-Tr:CAB12252"
                     /db_xref="GOA:P96601"
                     /db_xref="InterPro:IPR000014"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR016120"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="InterPro:IPR033463"
                     /db_xref="InterPro:IPR035965"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12073"
                     /db_xref="UniProtKB/Swiss-Prot:P96601"
                     /translation="MNKKKLSIRWKITILSYILVIFSFLIGGIVLIGNIQHTEERELK
                     KRLMNTARTVSEMTEVKEALARKKQTEAVRHAVEEIRMINEADYIVVMDMNHIRYTHP
                     VSTSIGKKSEGADEEAAFAEHIYFSEAKGEIGTAVRAFYPVKDQDLNQIGVVLVGKTL
                     PGIADILLHLKRDIAFIVVLTLGFGLAGSFLLARHIKKQMFQLEPHEIVRMYEERTAT
                     FHSMNEGVIAIDNRLVITIFNEKAKQIFEVQGDLIGKVIWEVLKDSRLPEIVERNKAV
                     YNEEIRVSGKVIMSSRIPIVMKKKVIGAVAIFQDRTEAAKMAEELTGVRNFVEALRVQ
                     NHEHMNKLHTIAGLIQLGKSEKALQLAFQASTEQENVTEFLHRSIQNDAAAGLLLSKI
                     RRGRELGIAVHIDENSSLQQFPEHVDQHDIVVLLGNLIENAFGSFETVQSEDKRIDIS
                     IEQTDDILAILIEDNGCGIEPTHMPRLYDKGFTVNKTGGTGYGLYLVKQIIDKGSGTI
                     EVDSHAGQGTSFSIVFPMKGEEAQHGS*"
     gene            479736..481343
                     /gene="dctS"
                     /locus_tag="BSU_04450"
                     /old_locus_tag="BSU04450"
     CDS             481333..482013
                     /gene="dctR"
                     /locus_tag="BSU_04460"
                     /old_locus_tag="BSU04460"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10627041, 11717295, 1290636, 12949159"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10627041, 11717295,
                     1290636, 12949159; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator"
                     /protein_id="NP_388327.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04460"
                     /db_xref="EnsemblGenomes-Tr:CAB12253"
                     /db_xref="GOA:P96602"
                     /db_xref="InterPro:IPR001034"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR024187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12074"
                     /db_xref="UniProtKB/Swiss-Prot:P96602"
                     /translation="MARKEWKVLLIEDDPMVQEVNKDFITTVKGVTVCATAGNGEEGM
                     KLIKEEQPDLVILDVYMPKKDGIKTLQEIRKQKLEVDVIVVSAAKDKETISLMLQNGA
                     VDYILKPFKLERMRQALEKYKQYKQKIEANDTLSQEQLDAILNIPQQAVQDLPKGLNH
                     FTMNEVTAFLKQQTASLSAEEVAKALGIARVTARRYLDYLEKTGIIKLDVQYGGVGRP
                     VNRYVLKG*"
     gene            481333..482013
                     /gene="dctR"
                     /locus_tag="BSU_04460"
                     /old_locus_tag="BSU04460"
     S_feature       482014..482088
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_500046_500120"
                     /HighExp="Sw, Diami, Mt0, G150, BI, Lbstat, M40t45,
                     Lbtran, Mal, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S150"
     promotor_-35    482055..482062
                     /Source="Nicolas_upshift_promotors"
                     /id="U351"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.450549450549451"
                     /psig="0.96003996003996"
                     /xcortree=1558
                     /SigmaFactorBS="accaaaatgtccgttatgatcataaACTTCCCCagactgtat
                     gaaaaCGCTATCATTCTAGTAAGaaagacacaaaaggcgaataggacagggggatgaa
                     g"
                     /listShort="dctP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    482077..482094
                     /Source="Nicolas_upshift_promotors"
                     /id="U351"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.450549450549451"
                     /psig="0.96003996003996"
                     /xcortree=1558
                     /SigmaFactorBS="accaaaatgtccgttatgatcataaACTTCCCCagactgtat
                     gaaaaCGCTATCATTCTAGTAAGaaagacacaaaaggcgaataggacagggggatgaa
                     g"
                     /listShort="dctP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        482090
                     /Source="Nicolas_upshifts"
                     /id="U351"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.450549450549451"
                     /psig="0.96003996003996"
                     /xcortree=1558
                     /SigmaFactorBS="accaaaatgtccgttatgatcataaACTTCCCCagactgtat
                     gaaaaCGCTATCATTCTAGTAAGaaagacacaaaaggcgaataggacagggggatgaa
                     g"
                     /listShort="dctP"
                     /GFF_Attribute="listLong"
     CDS             482134..483399
                     /gene="dctP"
                     /locus_tag="BSU_04470"
                     /old_locus_tag="BSU04470"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10627041, 10708364, 12949159, 15849754, 16850406,
                     20363944, 22389480"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10627041, 10708364,
                     12949159, 15849754, 16850406, 20363944, 22389480; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transport protein"
                     /protein_id="NP_388328.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04470"
                     /db_xref="EnsemblGenomes-Tr:CAB12254"
                     /db_xref="GOA:P96603"
                     /db_xref="InterPro:IPR001991"
                     /db_xref="InterPro:IPR018107"
                     /db_xref="InterPro:IPR023954"
                     /db_xref="InterPro:IPR036458"
                     /db_xref="SubtiList:BG12075"
                     /db_xref="UniProtKB/Swiss-Prot:P96603"
                     /translation="MKLFKNLTVQVITAVIIGVIVGLVWPDVGKEMKPLGDTFINAVK
                     MVIAPIIFFTIVLGIAKMGDMKKVGKVGGKAFIYFEVVTTLALIIGLFVVNIMKPGAG
                     LDYSKLEKGDVSQYTQNGGQGIDWIEFITHIVPSNMVDAFAKGDILQVLFFSILFGVG
                     LAALGEKGKSVIDFFDKVSHVFFKIIGYIMRAAPIGAFGAMAYTIGHFGLDSIKPLAS
                     LMMSVYITMFLFVFVALNIICKLYGFSLWNYLRFIKDELLIVLGTSSSESVLPRMMDK
                     MERYGCSKSVVGLVIPTGYSFNLDGTSIYLSMATVFLAQVFGVDLSIGQQITIILVLM
                     LTSKGAAGVTGSGFIVLASTLSALQVIPLEGLALLLGVDRFMSEGRAIVNLIGNGIAT
                     IIVAKSENEFDEAKSIEAVEGMKKMKTAV*"
     gene            482134..483399
                     /gene="dctP"
                     /locus_tag="BSU_04470"
                     /old_locus_tag="BSU04470"
     downshifts      483392
                     /Source="Nicolas_upshifts"
                     /id="D211"
                     /incds=0
                     /nref=175
                     /ntot=235
                     /MaxReadThrough="3.99042"
                     /MaxDrop="7.04798"
                     /score="45.0636559"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U351"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(483446)
                     /Source="Nicolas_upshifts"
                     /id="D212"
                     /incds=0
                     /nref=1
                     /ntot=9
                     /MaxReadThrough="0.588190000000001"
                     /MaxDrop="3.06255"
                     /score="19.3433396"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U350"
                     /TUdmin="-4818"
                     /isTUend="FALSE"
     misc_feature    483483..483500
                     /Source="Nicolas_upshift_promotors"
                     /id="U352"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.423576423576424"
                     /psig="0.483516483516484"
                     /xcortree=1457
                     /SigmaFactorBS="gtttttttaattgtttaagaattattaaggtaaggacagaga
                     cctcagcatttttttgTTATATAATTTACAAATGgatactatattgaatgaaggacgt
                     t"
                     /listShort="ydbI, S151, ydbJ, ydbK, ydbL, S152, ydbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        483485
                     /Source="Nicolas_upshifts"
                     /id="U352"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.423576423576424"
                     /psig="0.483516483516484"
                     /xcortree=1457
                     /SigmaFactorBS="gtttttttaattgtttaagaattattaaggtaaggacagaga
                     cctcagcatttttttgTTATATAATTTACAAATGgatactatattgaatgaaggacgt
                     t"
                     /listShort="ydbI, S151, ydbJ, ydbK, ydbL, S152, ydbM"
                     /GFF_Attribute="listLong"
     CDS             483547..484599
                     /gene="ydbI"
                     /locus_tag="BSU_04480"
                     /old_locus_tag="BSU04480"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388329.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04480"
                     /db_xref="EnsemblGenomes-Tr:CAB12255"
                     /db_xref="GOA:P96604"
                     /db_xref="InterPro:IPR002549"
                     /db_xref="SubtiList:BG12076"
                     /db_xref="UniProtKB/Swiss-Prot:P96604"
                     /translation="MAALVKFFQHPGVRRFSIFVVLTGVLYLFKSMINLILLTFIFTF
                     LMDRLELVVRQFVSQFFRVSQRVVITFLYMLLAVLLTVGGFVFYPVVAAQIQQLVKQI
                     KHIAYHPDSIPFFDEITSVFGDINISSYVKEGFNVVYTYLADISTFGLQVVMALILSM
                     FFLFEKKRLSEFMAKFKTSKLRVFYEEIAFFGSKFARTFGKVLEAQFIIALVNCILTF
                     IALWIMHFPQLFGLSIMVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFA
                     IHAIETYFLNPKLMSAKTELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVT
                     NKEDRSKGPRENSDKK*"
     gene            483547..484599
                     /gene="ydbI"
                     /locus_tag="BSU_04480"
                     /old_locus_tag="BSU04480"
     S_feature       484600..484843
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_502632_502875"
                     /HighExp="S8, S5, S6, LoTm, S7, S3, LBGstat, LBGexp,
                     Paraq, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.87223499999999998"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.484"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S151"
     downshifts      484800
                     /Source="Nicolas_upshifts"
                     /id="D213"
                     /incds=0
                     /nref=6
                     /ntot=45
                     /MaxReadThrough="6.05001"
                     /MaxDrop="3.52626"
                     /score="17.6400305"
                     /energy="-12.4"
                     /TU="U352"
                     /idTUdmin="U351"
                     /TUdmin=1408
                     /isTUend="FALSE"
     CDS             484876..485802
                     /gene="ydbJ"
                     /locus_tag="BSU_04490"
                     /old_locus_tag="BSU04490"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding subunit)"
                     /protein_id="NP_388330.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04490"
                     /db_xref="EnsemblGenomes-Tr:CAB12256"
                     /db_xref="GOA:P96605"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12077"
                     /db_xref="UniProtKB/Swiss-Prot:P96605"
                     /translation="MAEPILHIEGLDKKIGSKQILKQISMDVMEGEIIGLLGPNGSGK
                     TTLIRIIVGLLKQNSGSVTISGFQHDTEFEKAMEAVGAIVENPEFYPYLTGWENLKHF
                     ANMHKKIADERLDEVVERVGLTSAIHDKVKTYSLGMRQRLGIAQAILHRPKLLILDEP
                     TNGLDPAGMKDFRDHIKELAEMEGTAVLFATHLLREVEDLCDRVIIIQKGEIKAEVSL
                     QGTDQTTEKAIIEVQPQEKALNWLTGNQYQAESQDGTIVVEVAKENIPELNRSLVGQD
                     LNVFSITPYTQSLEDEFIKATTAHQEEGEELV*"
     gene            484876..485802
                     /gene="ydbJ"
                     /locus_tag="BSU_04490"
                     /old_locus_tag="BSU04490"
     CDS             485822..486562
                     /gene="ydbK"
                     /locus_tag="BSU_04500"
                     /old_locus_tag="BSU04500"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12486040, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux ABC-transporter (permease
                     subunit)"
                     /protein_id="NP_388331.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04500"
                     /db_xref="EnsemblGenomes-Tr:CAB12257"
                     /db_xref="GOA:P96606"
                     /db_xref="InterPro:IPR032688"
                     /db_xref="SubtiList:BG12078"
                     /db_xref="UniProtKB/Swiss-Prot:P96606"
                     /translation="MKLFNRKVTLVSLILMAVFQFFMALIIKRIVISAGTDENFIGYL
                     SYTPSLNILLQALTIVIAATIVSMEFDKKTIKFLLIRPVKRQKVFWSKLITVVMVSFY
                     LYLAYYILALLFGLLFFGTSVTAESKTLLVNTLALIGSNWLEAVMMGLFGLLCSSLFR
                     NSAVAVVVSFVVLYGASTLVQLMKLFENKWGSFLLFANTDFTQYRSGETALFSGMTPL
                     FSIGILIIHAIFFIVVGWWCFCKRDVRV*"
     gene            485822..486562
                     /gene="ydbK"
                     /locus_tag="BSU_04500"
                     /old_locus_tag="BSU04500"
     misc_feature    486621..486640
                     /Source="Nicolas_upshift_promotors"
                     /id="U353"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.612387612387612"
                     /psig="0.99000999000999"
                     /xcortree=1624
                     /SigmaFactorBS="caaggaatgacatttttgtgaaaaagctcacgtaaatcaata
                     tcatttgatatttTGGTTTATACTAAAGGTACTgacggaggtgtctcgattgaggaac
                     t"
                     /listShort="ydbL, S152, ydbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        486626
                     /Source="Nicolas_upshifts"
                     /id="U353"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.612387612387612"
                     /psig="0.99000999000999"
                     /xcortree=1624
                     /SigmaFactorBS="caaggaatgacatttttgtgaaaaagctcacgtaaatcaata
                     tcatttgatatttTGGTTTATACTAAAGGTACTgacggaggtgtctcgattgaggaac
                     t"
                     /listShort="ydbL, S152, ydbM"
                     /GFF_Attribute="listLong"
     CDS             486657..486992
                     /gene="ydbL"
                     /locus_tag="BSU_04510"
                     /old_locus_tag="BSU04510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17928292; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glyco-prenyl flippase subunit"
                     /protein_id="NP_388332.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04510"
                     /db_xref="EnsemblGenomes-Tr:CAB12258"
                     /db_xref="GOA:P96607"
                     /db_xref="SubtiList:BG12079"
                     /db_xref="UniProtKB/Swiss-Prot:P96607"
                     /translation="MRNFITALPIVLLLGFSFVSFMFQFEHLVYFRLALGLFSLVGLY
                     MIYKMKTGIRYFIIYLYASWIVLAAVTAFEEPIFSSFFFGGLVMTMGYLTYMLIYLGM
                     KQDRDANPV*"
     gene            486657..486992
                     /gene="ydbL"
                     /locus_tag="BSU_04510"
                     /old_locus_tag="BSU04510"
     downshifts      486967
                     /Source="Nicolas_upshifts"
                     /id="D214"
                     /incds=0
                     /nref=2
                     /ntot=99
                     /MaxReadThrough="5.33473"
                     /MaxDrop="5.39081"
                     /score="25.8152101"
                     /energy="-18.4"
                     /TU="U352,U353"
                     /idTUdmin="U352"
                     /TUdmin="-1177"
                     /isTUend="FALSE"
     S_feature       487012..487081
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_505044_505113"
                     /HighExp="ferm, nit, S2, S0, Gly, M0t45, M0t90, Lbstat,
                     M/G, M40t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, Sig-"
                     /TUshortPSig="0.99, 0.484"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S152"
     promotor_-35    487047..487054
                     /Source="Nicolas_upshift_promotors"
                     /id="U354"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.973026973026973"
                     /xcortree=1741
                     /SigmaFactorBS="ttttctatactgggcaaaaggttaaCAGTTGCGgaaaaatgg
                     caggAAATCTATAATACATATTAAatttatcggaattaaaactggggggctgccggat
                     g"
                     /listShort="ydbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    487068..487087
                     /Source="Nicolas_upshift_promotors"
                     /id="U354"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.973026973026973"
                     /xcortree=1741
                     /SigmaFactorBS="ttttctatactgggcaaaaggttaaCAGTTGCGgaaaaatgg
                     caggAAATCTATAATACATATTAAatttatcggaattaaaactggggggctgccggat
                     g"
                     /listShort="ydbM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        487082
                     /Source="Nicolas_upshifts"
                     /id="U354"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.973026973026973"
                     /xcortree=1741
                     /SigmaFactorBS="ttttctatactgggcaaaaggttaaCAGTTGCGgaaaaatgg
                     caggAAATCTATAATACATATTAAatttatcggaattaaaactggggggctgccggat
                     g"
                     /listShort="ydbM"
                     /GFF_Attribute="listLong"
     CDS             487120..488265
                     /gene="ydbM"
                     /locus_tag="BSU_04520"
                     /old_locus_tag="BSU04520"
                     /EC_number="1.3.99.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12193636, 16513748,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA dehydrogenase"
                     /protein_id="NP_388333.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04520"
                     /db_xref="EnsemblGenomes-Tr:CAB12259"
                     /db_xref="GOA:P96608"
                     /db_xref="InterPro:IPR006091"
                     /db_xref="InterPro:IPR009100"
                     /db_xref="InterPro:IPR013107"
                     /db_xref="InterPro:IPR013786"
                     /db_xref="InterPro:IPR036250"
                     /db_xref="InterPro:IPR037069"
                     /db_xref="SubtiList:BG12080"
                     /db_xref="UniProtKB/Swiss-Prot:P96608"
                     /translation="MSLFIQNDQQRQWMEKIGRIADEFQQTAAEDDEQGRFPAEKIQK
                     LRDAGYTALTLPASHGGGGISVYDMLLFQERLARGDAPTALSIGWHLSVIGELGEGNS
                     WDEDVFAFVAKEVQNGAVINRAATEAKTGSPTRGGRPGTHAVKKDGKWAVNGRKTFTT
                     MSQALDYFLVTAWIEDKQTTGVFLIHKDDPGLSIEETWDMMAMRATGSHDLVLNEVML
                     DENKLVELLQGPRGAKPNGWLLHIPAIYLGVAQAARDYAVQFASEYSPNSLNGPIKNV
                     PAVQQRTGEMELELLNARHFLFHIAQLYDDPVRRPHLTSELGAAKHIVTNAALSVVDK
                     AMRIVGAKSLERTNPLQRYYRDVRAGLHNPPMDDAVIHKLAAEAFES*"
     gene            487120..488265
                     /gene="ydbM"
                     /locus_tag="BSU_04520"
                     /old_locus_tag="BSU04520"
     downshifts      488247
                     /Source="Nicolas_upshifts"
                     /id="D215"
                     /incds=0
                     /nref=13
                     /ntot=123
                     /MaxReadThrough="2.90782"
                     /MaxDrop="4.20573"
                     /score="9.48525091"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U353"
                     /TUdmin="-7"
                     /isTUend="TRUE"
     CDS             complement(488290..488469)
                     /gene="fbpB"
                     /locus_tag="BSU_04530"
                     /old_locus_tag="BSU04530"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 16428414, 18697947, 22427629"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 16428414,
                     18697947, 22427629; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of iron homeostasis"
                     /protein_id="NP_388334.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04530"
                     /db_xref="EnsemblGenomes-Tr:CAB12260"
                     /db_xref="GOA:P96609"
                     /db_xref="InterPro:IPR025004"
                     /db_xref="SubtiList:BG12081"
                     /db_xref="UniProtKB/Swiss-Prot:P96609"
                     /translation="MNTNMSGGRRSMPKRKVKTYQQLIQENKEAIMGNPKLMNVIYDR
                     IDRKHQKNLQEQNNT*"
     gene            complement(488290..488469)
                     /gene="fbpB"
                     /locus_tag="BSU_04530"
                     /old_locus_tag="BSU04530"
     downshifts      complement(488308)
                     /Source="Nicolas_upshifts"
                     /id="D216"
                     /incds=0
                     /nref=158
                     /ntot=207
                     /MaxReadThrough="2.35872"
                     /MaxDrop="6.38199"
                     /score="26.3317207"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U355"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(488423..488587)
                     /gene="fbpA"
                     /locus_tag="BSU_04536"
                     /old_locus_tag="BSU04536"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:18697947"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 18697947; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of iron homeostasis"
                     /protein_id="YP_009513944.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04536"
                     /db_xref="EnsemblGenomes-Tr:CCQ48594"
                     /db_xref="InterPro:IPR025072"
                     /db_xref="UniProtKB/TrEMBL:L8ECQ9"
                     /translation="MTPQSAEIRKKQLIHLLIQNGIYKKSKRHLYELSLTELESEYKH
                     VRRAPEHAEA*"
     gene            complement(488423..488587)
                     /gene="fbpA"
                     /locus_tag="BSU_04536"
                     /old_locus_tag="BSU04536"
     S_feature       complement(488470..488638)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_506502_506670_c"
                     /HighExp="B60, nit, B36, Lbexp, GM 15, GM 10, dia0, S2, GM
                     25, BI"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99141199999999996"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S153"
     promotor_-10    complement(488630..488649)
                     /Source="Nicolas_upshift_promotors"
                     /id="U355"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=2111
                     /SigmaFactorBS="taaattggccaagaataggactcttttcaTCTTTACAggcta
                     ttgcggacaTTGTATACTGAAGTTAATTGataatgattatcaatatcgtttgattgga
                     g"
                     /listShort="S153, ydbN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(488640)
                     /Source="Nicolas_upshifts"
                     /id="U355"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=2111
                     /SigmaFactorBS="taaattggccaagaataggactcttttcaTCTTTACAggcta
                     ttgcggacaTTGTATACTGAAGTTAATTGataatgattatcaatatcgtttgattgga
                     g"
                     /listShort="S153, ydbN"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(488664..488671)
                     /Source="Nicolas_upshift_promotors"
                     /id="U355"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=2111
                     /SigmaFactorBS="taaattggccaagaataggactcttttcaTCTTTACAggcta
                     ttgcggacaTTGTATACTGAAGTTAATTGataatgattatcaatatcgtttgattgga
                     g"
                     /listShort="S153, ydbN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    488779..488784
                     /Source="Nicolas_upshift_promotors"
                     /id="U356"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.933066933066933"
                     /psig="0.933066933066933"
                     /xcortree=1191
                     /SigmaFactorBS="tgctgtcgaaatattccgcttcattgaacgcacccTGCTATt
                     tttcatgttttgaaCCATACTATGTAATAGAATggaggctggtattcaatggagcgga
                     c"
                     /listShort="ydbO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    488800..488818
                     /Source="Nicolas_upshift_promotors"
                     /id="U356"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.933066933066933"
                     /psig="0.933066933066933"
                     /xcortree=1191
                     /SigmaFactorBS="tgctgtcgaaatattccgcttcattgaacgcacccTGCTATt
                     tttcatgttttgaaCCATACTATGTAATAGAATggaggctggtattcaatggagcgga
                     c"
                     /listShort="ydbO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        488804
                     /Source="Nicolas_upshifts"
                     /id="U356"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.933066933066933"
                     /psig="0.933066933066933"
                     /xcortree=1191
                     /SigmaFactorBS="tgctgtcgaaatattccgcttcattgaacgcacccTGCTATt
                     tttcatgttttgaaCCATACTATGTAATAGAATggaggctggtattcaatggagcgga
                     c"
                     /listShort="ydbO"
                     /GFF_Attribute="listLong"
     CDS             488834..489706
                     /gene="ydbO"
                     /locus_tag="BSU_04540"
                     /old_locus_tag="BSU04540"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative cation efflux system"
                     /protein_id="NP_388335.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04540"
                     /db_xref="EnsemblGenomes-Tr:CAB12261"
                     /db_xref="GOA:P96610"
                     /db_xref="InterPro:IPR002524"
                     /db_xref="InterPro:IPR027469"
                     /db_xref="InterPro:IPR027470"
                     /db_xref="InterPro:IPR036837"
                     /db_xref="SubtiList:BG12082"
                     /db_xref="UniProtKB/Swiss-Prot:P96610"
                     /translation="MERTENLKKGEKGALLNIFAYVILAVVKLVIGILYHSEALRADG
                     LNNGTDIVASVAVLIGLRISQRPADSDHPYGHYRAETISSLVASFIMMAVGIEVLIGG
                     GKAIAGGTTETPNLIAAWTALGSAVFMYGIYLYNKRLAASIKSSALMAAAKDSRSDAF
                     VSAGAFIGVFSSQLKLPWVDPVTAFIIGIIICKTAWDIFKDASHSLTDGFHLKDLEPY
                     KQTVGRIENVHRLKDVKARYLGSTVHIEMVITVDPKLTVEEGHGVADEVEDKIKHEHD
                     VTHVHVHVEPDDIK*"
     gene            488834..489706
                     /gene="ydbO"
                     /locus_tag="BSU_04540"
                     /old_locus_tag="BSU04540"
     promotor_-35    489070..489079
                     /Source="Nicolas_upshift_promotors"
                     /id="U357"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1650
                     /SigmaFactorBS="gctgacagcgatcatccatacggccattatcgggcTGAAACA
                     ATTtcgtctcttgttGCGTCTTTTATTATGAtggcagtcggcattgaagtgttaatcg
                     g"
                     /listShort="S155, S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    489092..489107
                     /Source="Nicolas_upshift_promotors"
                     /id="U357"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1650
                     /SigmaFactorBS="gctgacagcgatcatccatacggccattatcgggcTGAAACA
                     ATTtcgtctcttgttGCGTCTTTTATTATGAtggcagtcggcattgaagtgttaatcg
                     g"
                     /listShort="S155, S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        489095
                     /Source="Nicolas_upshifts"
                     /id="U357"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1650
                     /SigmaFactorBS="gctgacagcgatcatccatacggccattatcgggcTGAAACA
                     ATTtcgtctcttgttGCGTCTTTTATTATGAtggcagtcggcattgaagtgttaatcg
                     g"
                     /listShort="S155, S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
     S_feature       complement(489651..489720)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_507683_507752_c"
                     /HighExp="LPhT, dia15, dia5, Diami, Etha, Lbtran, LBGtran,
                     LBGstat, Mt0, M0t45"
                     /AntisenseName="ydbO"
                     /AntisenseCor="0.18463882527998399"
                     /AntisenseRegPval="-2.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S154"
     downshifts      complement(489694)
                     /Source="Nicolas_upshifts"
                     /id="D217"
                     /incds=0
                     /nref=145
                     /ntot=242
                     /MaxReadThrough="3.07579"
                     /MaxDrop="6.00116"
                     /score="9.69023537"
                     /energy="-12.3"
                     /TU="U359"
                     /idTUdmin="U359"
                     /TUdmin="-198"
                     /isTUend="FALSE"
     S_feature       489707..490056
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_507739_508088"
                     /HighExp="Salt, Paraq, G135, ferm, Oxctl, T-0.40H, G150,
                     Lbexp, T3.0H, T2.30H"
                     /AntisenseName="ydbP"
                     /AntisenseCor="-0.27800721625230801"
                     /AntisenseRegPval="-5.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S155"
     CDS             complement(489721..490041)
                     /gene="ydbP"
                     /locus_tag="BSU_04550"
                     /old_locus_tag="BSU04550"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10482513; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative thioredoxin or thiol-disulfide
                     isomerase"
                     /protein_id="NP_388336.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04550"
                     /db_xref="EnsemblGenomes-Tr:CAB12262"
                     /db_xref="GOA:P96611"
                     /db_xref="InterPro:IPR005746"
                     /db_xref="InterPro:IPR013766"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="SubtiList:BG12083"
                     /db_xref="UniProtKB/Swiss-Prot:P96611"
                     /translation="MKKITTNEQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILE
                     EYNQNDWYELNKDELPDLAEKYQVMGIPSLLIFKNGEKTAHLHSANAKTPEEVTEFLS
                     EHIS*"
     gene            complement(489721..490041)
                     /gene="ydbP"
                     /locus_tag="BSU_04550"
                     /old_locus_tag="BSU04550"
     promotor_-35    490037..490041
                     /Source="Nicolas_upshift_promotors"
                     /id="U358"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.65034965034965"
                     /psig="0.298701298701299"
                     /xcortree=1554
                     /SigmaFactorBS="tgaatcagttcattaaattgttcgtttgttgtgatttttTTC
                     ATatgtcacaTCTCCTTTTCAATGCcattttaatataaaataaaaaggaattacatac
                     a"
                     /listShort="S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    490050..490064
                     /Source="Nicolas_upshift_promotors"
                     /id="U358"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.65034965034965"
                     /psig="0.298701298701299"
                     /xcortree=1554
                     /SigmaFactorBS="tgaatcagttcattaaattgttcgtttgttgtgatttttTTC
                     ATatgtcacaTCTCCTTTTCAATGCcattttaatataaaataaaaaggaattacatac
                     a"
                     /listShort="S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       490058..490215
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_508090_508247"
                     /HighExp="Lbexp, dia0, LBGexp, H2O2, Paraq, Oxctl, G180,
                     Salt, M0t45, Mt0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigWXY"
                     /TUshortPSig="0.299, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S156"
     upshifts        490058
                     /Source="Nicolas_upshifts"
                     /id="U358"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.65034965034965"
                     /psig="0.298701298701299"
                     /xcortree=1554
                     /SigmaFactorBS="tgaatcagttcattaaattgttcgtttgttgtgatttttTTC
                     ATatgtcacaTCTCCTTTTCAATGCcattttaatataaaataaaaaggaattacatac
                     a"
                     /listShort="S156, ddl, murF, S157, S158, cshA"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(490062..490081)
                     /Source="Nicolas_upshift_promotors"
                     /id="U359"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=2021
                     /SigmaFactorBS="gatctaattatttttgggcatgctgatgttgaatgCATTTGT
                     AtgtaattccttttTATTTTATATTAAAATGGCAttgaaaaggagatgtgacatatga
                     a"
                     /listShort="ydbP, S154"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(490077)
                     /Source="Nicolas_upshifts"
                     /id="U359"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=2021
                     /SigmaFactorBS="gatctaattatttttgggcatgctgatgttgaatgCATTTGT
                     AtgtaattccttttTATTTTATATTAAAATGGCAttgaaaaggagatgtgacatatga
                     a"
                     /listShort="ydbP, S154"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(490095..490102)
                     /Source="Nicolas_upshift_promotors"
                     /id="U359"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=2021
                     /SigmaFactorBS="gatctaattatttttgggcatgctgatgttgaatgCATTTGT
                     AtgtaattccttttTATTTTATATTAAAATGGCAttgaaaaggagatgtgacatatga
                     a"
                     /listShort="ydbP, S154"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             490216..491280
                     /gene="ddlA"
                     /locus_tag="BSU_04560"
                     /old_locus_tag="BSU04560"
                     /EC_number="6.3.2.4"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8662022, 12682299, 22407814;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine ligase A"
                     /protein_id="NP_388337.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04560"
                     /db_xref="EnsemblGenomes-Tr:CAB12263"
                     /db_xref="GOA:P96612"
                     /db_xref="InterPro:IPR000291"
                     /db_xref="InterPro:IPR005905"
                     /db_xref="InterPro:IPR011095"
                     /db_xref="InterPro:IPR011127"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="SubtiList:BG11932"
                     /db_xref="UniProtKB/Swiss-Prot:P96612"
                     /translation="MYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRG
                     ARLTEPVSNVKMLQFEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDG
                     TIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKE
                     SCEEVEQELGYPCFVKPANLGSSVGISKCRNREELQKAFELAFQYDRKVVVEEGINGR
                     EIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMA
                     IKAFKAIDGSGLVRADFFLTADGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIE
                     QLVELAKERHAEKQLIKHTF*"
     gene            490216..491280
                     /gene="ddlA"
                     /locus_tag="BSU_04560"
                     /old_locus_tag="BSU04560"
     downshifts      491268
                     /Source="Nicolas_upshifts"
                     /id="D218"
                     /incds=0
                     /nref=1
                     /ntot=59
                     /MaxReadThrough="5.68418"
                     /MaxDrop="2.53103"
                     /score="3.92144467"
                     /energy="-9.6"
                     /TU="U357,U358"
                     /idTUdmin="U356"
                     /TUdmin=2310
                     /isTUend="FALSE"
     CDS             491352..492725
                     /gene="murF"
                     /locus_tag="BSU_04570"
                     /old_locus_tag="BSU04570"
                     /EC_number="6.3.2.10"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 17714441; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
                     6-diaminopimelate-D-alanyl-D-alanine ligase"
                     /protein_id="NP_388338.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04570"
                     /db_xref="EnsemblGenomes-Tr:CAB12264"
                     /db_xref="GOA:P96613"
                     /db_xref="InterPro:IPR000713"
                     /db_xref="InterPro:IPR004101"
                     /db_xref="InterPro:IPR005863"
                     /db_xref="InterPro:IPR013221"
                     /db_xref="InterPro:IPR035911"
                     /db_xref="InterPro:IPR036565"
                     /db_xref="InterPro:IPR036615"
                     /db_xref="SubtiList:BG12084"
                     /db_xref="UniProtKB/Swiss-Prot:P96613"
                     /translation="MIKRTVKNIAEMVKGTLANPQYEQTVIHGVATDTRKLEQHQLFI
                     PLKGERFDGHSFVEQAFEAGVAAVLWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQ
                     ELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEI
                     AVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKED
                     GVLIYIGDEPLLQNAYSCQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIENTFFIPI
                     LGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNA
                     SPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYG
                     KLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKD
                     LIESPLS*"
     gene            491352..492725
                     /gene="murF"
                     /locus_tag="BSU_04570"
                     /old_locus_tag="BSU04570"
     promotor_-35    492756..492762
                     /Source="Nicolas_upshift_promotors"
                     /id="U360"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=849
                     /SigmaFactorBS="gaaaatattttgcgaaaaaacgcatattgcATCATAAaataa
                     cctgatatGCAAACACTAATgtatgccggccgaaaattatgtatatctggccggctgc
                     g"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    492776..492787
                     /Source="Nicolas_upshift_promotors"
                     /id="U360"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=849
                     /SigmaFactorBS="gaaaatattttgcgaaaaaacgcatattgcATCATAAaataa
                     cctgatatGCAAACACTAATgtatgccggccgaaaattatgtatatctggccggctgc
                     g"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        492786
                     /Source="Nicolas_upshifts"
                     /id="U360"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=849
                     /SigmaFactorBS="gaaaatattttgcgaaaaaacgcatattgcATCATAAaataa
                     cctgatatGCAAACACTAATgtatgccggccgaaaattatgtatatctggccggctgc
                     g"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
     misc_feature    492829..492848
                     /Source="Nicolas_upshift_promotors"
                     /id="U361"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.958041958041958"
                     /psig=1
                     /xcortree=2138
                     /SigmaFactorBS="tgatatgcaaacactaatgtatgccggccgaaaattatgtat
                     atctggccggctgcggcTATGATACAATATATATAGGttatttcgcgatacgaacata
                     t"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       492830..493004
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_510862_511036"
                     /HighExp="Cold, ferm, nit, G135, S5, LBGexp, G150, S8, S7,
                     BI"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.76694499999999999"
                     /TUshortSig="SigA, SigGF, Sig-, SigWXY"
                     /TUshortPSig="1, 1, 0.299, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S157"
     upshifts        492830
                     /Source="Nicolas_upshifts"
                     /id="U361"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.958041958041958"
                     /psig=1
                     /xcortree=2138
                     /SigmaFactorBS="tgatatgcaaacactaatgtatgccggccgaaaattatgtat
                     atctggccggctgcggcTATGATACAATATATATAGGttatttcgcgatacgaacata
                     t"
                     /listShort="S157, S158, cshA"
                     /GFF_Attribute="listLong"
     promotor_-35    492972..492979
                     /Source="Nicolas_upshift_promotors"
                     /id="U362"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig=1
                     /xcortree=1884
                     /SigmaFactorBS="tcgagatgccgatctgcttctcatctTATTGAAAaacaaata
                     gtgtaaTGGTAAGATAAAACTTAAAGtaattcgggctttgtatacggatggatcctgt
                     c"
                     /listShort="S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    492994..493013
                     /Source="Nicolas_upshift_promotors"
                     /id="U362"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig=1
                     /xcortree=1884
                     /SigmaFactorBS="tcgagatgccgatctgcttctcatctTATTGAAAaacaaata
                     gtgtaaTGGTAAGATAAAACTTAAAGtaattcgggctttgtatacggatggatcctgt
                     c"
                     /listShort="S158, cshA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       493006..493073
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_511038_511105"
                     /HighExp="Cold, G150, T-3.40H, HPh, Salt, LPh, G180, G135,
                     Oxctl, T-5.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigGF, Sig-, SigWXY"
                     /TUshortPSig="1, 1, 1, 0.299, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S158"
     upshifts        493006
                     /Source="Nicolas_upshifts"
                     /id="U362"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.586413586413586"
                     /psig=1
                     /xcortree=1884
                     /SigmaFactorBS="tcgagatgccgatctgcttctcatctTATTGAAAaacaaata
                     gtgtaaTGGTAAGATAAAACTTAAAGtaattcgggctttgtatacggatggatcctgt
                     c"
                     /listShort="S158, cshA"
                     /GFF_Attribute="listLong"
     CDS             493125..494609
                     /gene="cshA"
                     /locus_tag="BSU_04580"
                     /old_locus_tag="BSU04580"
                     /EC_number="3.6.1.-"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16352840, 27965645"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16352840, 27965645;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase; cold shock"
                     /protein_id="NP_388339.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04580"
                     /db_xref="EnsemblGenomes-Tr:CAB12265"
                     /db_xref="GOA:P96614"
                     /db_xref="InterPro:IPR000629"
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR011545"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR014014"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR030880"
                     /db_xref="SubtiList:BG12085"
                     /db_xref="UniProtKB/Swiss-Prot:P96614"
                     /translation="MTITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVI
                     GQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKV
                     LPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNM
                     GFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQ
                     FYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLT
                     QAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR
                     AGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTIS
                     ENNLNFYMTAAAELLEDHDAVTVVAAAIKMATKEPDDTPVRLTDEAPMVSKRYKNQRS
                     SKRRDGQGGGYRGGKGKSNNRSSYDKKRSNDRRSSGDRRQKKSY*"
     gene            493125..494609
                     /gene="cshA"
                     /locus_tag="BSU_04580"
                     /old_locus_tag="BSU04580"
     downshifts      494602
                     /Source="Nicolas_upshifts"
                     /id="D219"
                     /incds=0
                     /nref=309
                     /ntot=313
                     /MaxReadThrough="1.91428"
                     /MaxDrop="8.13079"
                     /score="26.104757"
                     /energy="-13.1"
                     /TU="NA"
                     /idTUdmin="U358"
                     /TUdmin="-10"
                     /isTUend="TRUE"
     S_feature       494722..494781
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_512754_512813"
                     /HighExp="Etha, LBGexp, G180, Cold, Lbtran, dia0, G150,
                     BMM, UNK1, MG-0.1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S159"
     promotor_-35    494722..494731
                     /Source="Nicolas_upshift_promotors"
                     /id="U363"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1673
                     /SigmaFactorBS="tttgttattcagcaaactttcagctgacggaagccatttttc
                     tctgtatgcttaagaaTGAAACCTTTctgtaaaagagACGTATAAATAACGACgaaaa
                     a"
                     /listShort="S159, ydbS, ydbT, S160, S161, acpS, S162,
                     ydcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        494724
                     /Source="Nicolas_upshifts"
                     /id="U363"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1673
                     /SigmaFactorBS="tttgttattcagcaaactttcagctgacggaagccatttttc
                     tctgtatgcttaagaaTGAAACCTTTctgtaaaagagACGTATAAATAACGACgaaaa
                     a"
                     /listShort="S159, ydbS, ydbT, S160, S161, acpS, S162,
                     ydcC"
                     /GFF_Attribute="listLong"
     promotor_-10    494743..494758
                     /Source="Nicolas_upshift_promotors"
                     /id="U363"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1673
                     /SigmaFactorBS="tttgttattcagcaaactttcagctgacggaagccatttttc
                     tctgtatgcttaagaaTGAAACCTTTctgtaaaagagACGTATAAATAACGACgaaaa
                     a"
                     /listShort="S159, ydbS, ydbT, S160, S161, acpS, S162,
                     ydcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             494782..495261
                     /gene="ydbS"
                     /locus_tag="BSU_04590"
                     /old_locus_tag="BSU04590"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16629676"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16629676; Product type
                     ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="resistance to heterologous antibiotics"
                     /protein_id="NP_388340.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04590"
                     /db_xref="EnsemblGenomes-Tr:CAB12266"
                     /db_xref="GOA:P96615"
                     /db_xref="InterPro:IPR005182"
                     /db_xref="SubtiList:BG12086"
                     /db_xref="UniProtKB/Swiss-Prot:P96615"
                     /translation="MREQPKNQISPDGLKVWRLQEIIISAVCLLIVIAVAVLSYYFHW
                     PYWISGVLGAVWLLGSIVTVFIIPKVRHKVWRYEVHEHEIDIQSGIFVVTRVIVPMVR
                     VQHVDTSQGPLLKKYNLATVKISTAATVHSIPALEMEEADRLRDSISRLARVTDDDV*
                     "
     gene            494782..495261
                     /gene="ydbS"
                     /locus_tag="BSU_04590"
                     /old_locus_tag="BSU04590"
     CDS             495251..496732
                     /gene="ydbT"
                     /locus_tag="BSU_04600"
                     /old_locus_tag="BSU04600"
                     /experiment="publication(s) with functional evidences,
                     PMID:16629676"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16629676; Product type
                     ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="resistance to heterologous antibiotics"
                     /protein_id="NP_388341.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04600"
                     /db_xref="EnsemblGenomes-Tr:CAB12267"
                     /db_xref="GOA:P96616"
                     /db_xref="InterPro:IPR005182"
                     /db_xref="InterPro:IPR014529"
                     /db_xref="SubtiList:BG12087"
                     /db_xref="UniProtKB/Swiss-Prot:P96616"
                     /translation="MMSEPKRLHPVAVILNLCHTIIQTIKNIILPFFFVYIVNSNHTV
                     RFYGAIALGVLFIWLVAASIIKWRRFTYRIEDDEFRIEEGLFVTKKRYISIDRIQTMN
                     TSAGLVQQIFKLVKLQIETAGGGKEAEAVLSAISVEEAERIKEAVFKKKAQRRENELD
                     EERLEAEEELDPSVEVQEHYRMNAKELLMAASTSGGIGVIISAVFALISQLDEVLPMD
                     WLFDKFSFLQHASIGIYAVLIFIGLFIAWIFSIAGMMFRYANFQIIKKEQELVISRGI
                     IEKHQVTIPLRKIQAIKIKENIIRQLFGFVTVSIVSAGGGDREKEEGALTILFPMIHK
                     KKLPHMLRTFTPEYTLEENCRRLPRRALKRYLFRSVIFSLFLIIPLCIFFQPWGYLSV
                     ILLPIELLFGYLAYKEAAWTINGDRLQLTSRFIGRTTAIVLKKRMQVCKFSQSYFQKK
                     GRLYTISTSVKSSSHMEELTVRDVGEEDAAFILKWYSYEKADG*"
     gene            495251..496732
                     /gene="ydbT"
                     /locus_tag="BSU_04600"
                     /old_locus_tag="BSU04600"
     downshifts      496702
                     /Source="Nicolas_upshifts"
                     /id="D220"
                     /incds=0
                     /nref=6
                     /ntot=162
                     /MaxReadThrough="4.90913"
                     /MaxDrop="3.0931"
                     /score="48.2239319"
                     /energy="-17.1"
                     /TU="U363"
                     /idTUdmin="U364"
                     /TUdmin="-638"
                     /isTUend="FALSE"
     S_feature       496747..497074
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_514779_515106"
                     /HighExp="Salt, T0.30H, G135, T1.0H, T1.30H, G150, G180,
                     Oxctl, T-0.40H, aero"
                     /AntisenseName="ydcA"
                     /AntisenseCor="-0.25636523135066602"
                     /AntisenseRegPval="-4.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S160"
     downshifts      complement(496756)
                     /Source="Nicolas_upshifts"
                     /id="D221"
                     /incds=0
                     /nref=1
                     /ntot=66
                     /MaxReadThrough="0.258529999999999"
                     /MaxDrop="3.15455"
                     /score="-3.74867023"
                     /energy="-8.8"
                     /TU="NA"
                     /idTUdmin="U365"
                     /TUdmin=220
                     /isTUend="FALSE"
     CDS             complement(496984..497583)
                     /gene="ydcA"
                     /locus_tag="BSU_04610"
                     /old_locus_tag="BSU04610"
                     /EC_number="3.4.21.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15616571, 15849754,
                     16850406; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative rhomboid protease"
                     /protein_id="NP_388342.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04610"
                     /db_xref="EnsemblGenomes-Tr:CAB12268"
                     /db_xref="GOA:P96617"
                     /db_xref="InterPro:IPR022764"
                     /db_xref="InterPro:IPR035952"
                     /db_xref="SubtiList:BG12088"
                     /db_xref="UniProtKB/Swiss-Prot:P96617"
                     /translation="MFIRTENFQTFIRLYPVVTFILALQAVLWLFFSLPAHSVVLWRD
                     TVTGYNLGVANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYA
                     GSGIIGNIGTYVTEPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLA
                     FAVLMSFINSNINMMAHLFGLCGGFLLSFLCVQKKERRY*"
     gene            complement(496984..497583)
                     /gene="ydcA"
                     /locus_tag="BSU_04610"
                     /old_locus_tag="BSU04610"
     promotor_-35    497044..497049
                     /Source="Nicolas_upshift_promotors"
                     /id="U364"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2751
                     /SigmaFactorBS="aaaacgaaagaagaaacccgccgcatagTCCAAAcaaatggg
                     ccatCATGTTAATATTGGAGTTGAtaaacgacatgagaacggcaaatgcgagcagtgt
                     g"
                     /listShort="S161"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    497062..497081
                     /Source="Nicolas_upshift_promotors"
                     /id="U364"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2751
                     /SigmaFactorBS="aaaacgaaagaagaaacccgccgcatagTCCAAAcaaatggg
                     ccatCATGTTAATATTGGAGTTGAtaaacgacatgagaacggcaaatgcgagcagtgt
                     g"
                     /listShort="S161"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       497076..497677
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_515108_515709"
                     /HighExp="Salt, G135, G150, T0.30H, G180, T1.0H, T1.30H,
                     H2O2, Paraq, Oxctl"
                     /AntisenseName="ydcA"
                     /AntisenseCor="-0.11975373672841701"
                     /AntisenseRegPval="-1.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigWXY"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S161"
     upshifts        497076
                     /Source="Nicolas_upshifts"
                     /id="U364"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2751
                     /SigmaFactorBS="aaaacgaaagaagaaacccgccgcatagTCCAAAcaaatggg
                     ccatCATGTTAATATTGGAGTTGAtaaacgacatgagaacggcaaatgcgagcagtgt
                     g"
                     /listShort="S161"
                     /GFF_Attribute="listLong"
     misc_feature    complement(497607..497626)
                     /Source="Nicolas_upshift_promotors"
                     /id="U365"
                     /multdbtbs="SigE"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.907092907092907"
                     /xcortree=1402
                     /SigmaFactorBS="tgtatgataacctcctttgcgtacgtactatttaaatggttt
                     gtctcataaaCGTGTTACTATAGATATACCaaaatgaagaaaaggggctcggaatgtt
                     t"
                     /listShort="ydcA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(497618)
                     /Source="Nicolas_upshifts"
                     /id="U365"
                     /multdbtbs="SigE"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.907092907092907"
                     /xcortree=1402
                     /SigmaFactorBS="tgtatgataacctcctttgcgtacgtactatttaaatggttt
                     gtctcataaaCGTGTTACTATAGATATACCaaaatgaagaaaaggggctcggaatgtt
                     t"
                     /listShort="ydcA"
                     /GFF_Attribute="listLong"
     CDS             497678..498043
                     /gene="acpS"
                     /locus_tag="BSU_04620"
                     /old_locus_tag="BSU04620"
                     /EC_number="2.7.8.7"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11489886, 11525165,
                     11867633, 12682299, 12926246, 15955059, 16597923; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-acyl carrier protein synthase
                     (phosphopantetheinyl transferase)"
                     /protein_id="NP_388343.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04620"
                     /db_xref="EnsemblGenomes-Tr:CAB12269"
                     /db_xref="GOA:P96618"
                     /db_xref="InterPro:IPR002582"
                     /db_xref="InterPro:IPR004568"
                     /db_xref="InterPro:IPR008278"
                     /db_xref="InterPro:IPR037143"
                     /db_xref="PDB:1F7L"
                     /db_xref="PDB:1F7T"
                     /db_xref="PDB:1F80"
                     /db_xref="SubtiList:BG12089"
                     /db_xref="UniProtKB/Swiss-Prot:P96618"
                     /translation="MIYGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSEK
                     RKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSQAAVHVS
                     ITHTKEYAAAQVVIERLSS*"
     gene            497678..498043
                     /gene="acpS"
                     /locus_tag="BSU_04620"
                     /old_locus_tag="BSU04620"
     promotor_-35    498046..498051
                     /Source="Nicolas_upshift_promotors"
                     /id="U366"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=976
                     /SigmaFactorBS="tgccgcgcaggttgtgattgaaaggttgtcaagctagtcTGC
                     ATAttagggaaaccccacTCATATATTTGATAGTGCAttaagggagacaagttgtttg
                     a"
                     /listShort="S162, ydcC, alrA"
                     /listLong="endB, ndoA"
                     /label="promotor_-35"
     S_feature       498067..498208
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_516099_516240"
                     /HighExp="S3, S4, BT, LoTm, S5, T5.0H, M9-stat, S7, T4.0H,
                     T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigWXY"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S162"
     promotor_-10    498067..498085
                     /Source="Nicolas_upshift_promotors"
                     /id="U366"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=976
                     /SigmaFactorBS="tgccgcgcaggttgtgattgaaaggttgtcaagctagtcTGC
                     ATAttagggaaaccccacTCATATATTTGATAGTGCAttaagggagacaagttgtttg
                     a"
                     /listShort="S162, ydcC, alrA"
                     /listLong="endB, ndoA"
                     /label="promotor_-10"
     upshifts        498067
                     /Source="Nicolas_upshifts"
                     /id="U366"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=976
                     /SigmaFactorBS="tgccgcgcaggttgtgattgaaaggttgtcaagctagtcTGC
                     ATAttagggaaaccccacTCATATATTTGATAGTGCAttaagggagacaagttgtttg
                     a"
                     /listShort="S162, ydcC, alrA"
                     /listLong="endB, ndoA"
     CDS             498209..499225
                     /gene="ydcC"
                     /locus_tag="BSU_04630"
                     /old_locus_tag="BSU04630"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14523133; Product type
                     lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388344.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04630"
                     /db_xref="EnsemblGenomes-Tr:CAB12270"
                     /db_xref="GOA:P96619"
                     /db_xref="InterPro:IPR029046"
                     /db_xref="SubtiList:BG12090"
                     /db_xref="UniProtKB/Swiss-Prot:P96619"
                     /translation="MKKVRKSFVLLLTGLLAVLILSACGQKTQQDIVAGLDEKAKEYT
                     SYKAKAKMTIETGSEPQVYNVEIWHKKPSLYRVYLENPKKDQNQVILRNENGVFVLTP
                     SLNKSFRFQSDWPNNSSQVYLFESLVKDVQNDSDAVFTAKEKKYVFETKTNYQHNKML
                     PTQEITFNKKDMSPSSVKVMDTDRKVMVKVEFSSFEFNKQFDKESFDEKKNMTLSQMD
                     VATSAKPSDTFAVKTPLELPLGVKLLEEKDISTEDGKRIIMTYGGEKSFTLIQEKAQI
                     AKASSSVTLNGEPVNLGYTIGALSDASLSWTYDGVDYLLSSKDLSKEEMVTVAKSMQG
                     QSSK*"
     gene            498209..499225
                     /gene="ydcC"
                     /locus_tag="BSU_04630"
                     /old_locus_tag="BSU04630"
     downshifts      499210
                     /Source="Nicolas_upshifts"
                     /id="D222"
                     /incds=0
                     /nref=193
                     /ntot=256
                     /MaxReadThrough="3.39815"
                     /MaxDrop="6.13946"
                     /score="22.0391647"
                     /energy="-9.5"
                     /TU="U366"
                     /idTUdmin="U363"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    499270..499277
                     /Source="Nicolas_upshift_promotors"
                     /id="U367"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.652347652347652"
                     /psig=1
                     /xcortree=1877
                     /SigmaFactorBS="aaacatgatttggcctttttttcgttagacatCGTTTCCCtt
                     tagcctttaatTTTAGTATGATATGTAAATGatattgaataaaagctaggaagtgtcg
                     t"
                     /listShort="alrA, endB, ndoA, rsbRA, rsbS, rsbT, rsbU,
                     rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    499291..499310
                     /Source="Nicolas_upshift_promotors"
                     /id="U367"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.652347652347652"
                     /psig=1
                     /xcortree=1877
                     /SigmaFactorBS="aaacatgatttggcctttttttcgttagacatCGTTTCCCtt
                     tagcctttaatTTTAGTATGATATGTAAATGatattgaataaaagctaggaagtgtcg
                     t"
                     /listShort="alrA, endB, ndoA, rsbRA, rsbS, rsbT, rsbU,
                     rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        499298
                     /Source="Nicolas_upshifts"
                     /id="U367"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.652347652347652"
                     /psig=1
                     /xcortree=1877
                     /SigmaFactorBS="aaacatgatttggcctttttttcgttagacatCGTTTCCCtt
                     tagcctttaatTTTAGTATGATATGTAAATGatattgaataaaagctaggaagtgtcg
                     t"
                     /listShort="alrA, endB, ndoA, rsbRA, rsbS, rsbT, rsbU,
                     rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
     CDS             499340..500509
                     /gene="alrA"
                     /locus_tag="BSU_04640"
                     /old_locus_tag="BSU04640"
                     /EC_number="5.1.1.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 2835089, 12682299,
                     15043879, 18399999, 25227915; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine racemase"
                     /protein_id="NP_388345.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04640"
                     /db_xref="EnsemblGenomes-Tr:CAB12271"
                     /db_xref="GOA:P10725"
                     /db_xref="InterPro:IPR000821"
                     /db_xref="InterPro:IPR001608"
                     /db_xref="InterPro:IPR009006"
                     /db_xref="InterPro:IPR011079"
                     /db_xref="InterPro:IPR020622"
                     /db_xref="InterPro:IPR029066"
                     /db_xref="SubtiList:BG10950"
                     /db_xref="UniProtKB/Swiss-Prot:P10725"
                     /translation="MSTKPFYRDTWAEIDLSAIKENVSNMKKHIGEHVHLMAVVKANA
                     YGHGDAETAKAALDAGASCLAVAILDEAISLRKKGLKAPILVLGAVPPEYVAIAAEYD
                     VTLTGYSVEWLQEAARHTKKGSLHFHLKVDTGMNRLGVKTEEEVQNVMAILDRNPRLK
                     CKGVFTHFATADEKERGYFLMQFERFKELIAPLPLKNLMVHCANSAAGLRLKKGFFNA
                     VRFGIGMYGLRPSADMSDEIPFQLRPAFTLHSTLSHVKLIRKGESVSYGAEYTAEKDT
                     WIGTVPVGYADGWLRKLKGTDILVKGKRLKIAGRICMDQFMVELDQEYPPGTKVTLIG
                     RQGDEYISMDEIAGRLETINYEVACTISSRVPRMFLENGSIMEVRNPLLQVNISN*"
     gene            499340..500509
                     /gene="alrA"
                     /locus_tag="BSU_04640"
                     /old_locus_tag="BSU04640"
     promotor_-35    500438..500443
                     /Source="Nicolas_upshift_promotors"
                     /id="U368"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.93906093906094"
                     /psig="0.93906093906094"
                     /xcortree=1177
                     /SigmaFactorBS="tgaggtggcctgtacaataagttcccgtgttcccCGTATGtt
                     tttggaaaatggGAGTATAATGGAAGTAAGAaatcctttattgcaggtaaatataagc
                     a"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    500458..500476
                     /Source="Nicolas_upshift_promotors"
                     /id="U368"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.93906093906094"
                     /psig="0.93906093906094"
                     /xcortree=1177
                     /SigmaFactorBS="tgaggtggcctgtacaataagttcccgtgttcccCGTATGtt
                     tttggaaaatggGAGTATAATGGAAGTAAGAaatcctttattgcaggtaaatataagc
                     a"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        500464
                     /Source="Nicolas_upshifts"
                     /id="U368"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.93906093906094"
                     /psig="0.93906093906094"
                     /xcortree=1177
                     /SigmaFactorBS="tgaggtggcctgtacaataagttcccgtgttcccCGTATGtt
                     tttggaaaatggGAGTATAATGGAAGTAAGAaatcctttattgcaggtaaatataagc
                     a"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
     promotor_-35    500539..500542
                     /Source="Nicolas_upshift_promotors"
                     /id="U369"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.527472527472527"
                     /psig=1
                     /xcortree=2132
                     /SigmaFactorBS="taagcaattaacttacctaaatggagaattcataaaacagCT
                     TTgcttgaagagtgaatAATGGTATCATTATCACTGGatggataaaagagtcgtatcc
                     g"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    500558..500577
                     /Source="Nicolas_upshift_promotors"
                     /id="U369"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.527472527472527"
                     /psig=1
                     /xcortree=2132
                     /SigmaFactorBS="taagcaattaacttacctaaatggagaattcataaaacagCT
                     TTgcttgaagagtgaatAATGGTATCATTATCACTGGatggataaaagagtcgtatcc
                     g"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        500559
                     /Source="Nicolas_upshifts"
                     /id="U369"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.527472527472527"
                     /psig=1
                     /xcortree=2132
                     /SigmaFactorBS="taagcaattaacttacctaaatggagaattcataaaacagCT
                     TTgcttgaagagtgaatAATGGTATCATTATCACTGGatggataaaagagtcgtatcc
                     g"
                     /listShort="endB, ndoA, rsbRA, rsbS, rsbT, rsbU, rsbV,
                     rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
     CDS             500625..500906
                     /gene="ndoAI"
                     /locus_tag="BSU_04650"
                     /old_locus_tag="BSU04650"
                     /function="16.3: Control"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:15882409, 21763692, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15882409, 21763692,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin EndoAI"
                     /protein_id="NP_388346.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04650"
                     /db_xref="EnsemblGenomes-Tr:CAB12272"
                     /db_xref="GOA:P96621"
                     /db_xref="InterPro:IPR002145"
                     /db_xref="InterPro:IPR010985"
                     /db_xref="InterPro:IPR013321"
                     /db_xref="PDB:4ME7"
                     /db_xref="SubtiList:BG12091"
                     /db_xref="UniProtKB/Swiss-Prot:P96621"
                     /translation="MSESSARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAY
                     VSERTTRHNRDLMRRGYMEMAKINLNISSEAHFAECEAETTVERLVSGG*"
     gene            500625..500906
                     /gene="ndoAI"
                     /locus_tag="BSU_04650"
                     /old_locus_tag="BSU04650"
     CDS             500911..501261
                     /gene="ndoA"
                     /locus_tag="BSU_04660"
                     /old_locus_tag="BSU04660"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15882409, 21763692, 21897862, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15882409, 21763692,
                     21897862, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease toxin"
                     /protein_id="NP_388347.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04660"
                     /db_xref="EnsemblGenomes-Tr:CAB12273"
                     /db_xref="GOA:P96622"
                     /db_xref="InterPro:IPR003477"
                     /db_xref="InterPro:IPR011067"
                     /db_xref="PDB:1NE8"
                     /db_xref="PDB:4MDX"
                     /db_xref="PDB:4ME7"
                     /db_xref="SubtiList:BG12092"
                     /db_xref="UniProtKB/Swiss-Prot:P96622"
                     /translation="MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIV
                     AAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMDK
                     VDEALQISLALIDF*"
     gene            500911..501261
                     /gene="ndoA"
                     /locus_tag="BSU_04660"
                     /old_locus_tag="BSU04660"
     S_feature       complement(501051..501527)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_519083_519559_c"
                     /HighExp="Etha, Gly, Sw, S8, C30, S6, LBGstat, T0.30H, S7,
                     Salt"
                     /AntisenseName="ndoA"
                     /AntisenseCor="-0.36117231948253697"
                     /AntisenseRegPval="-9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD, SigB, SigK"
                     /TUshortPSig="1, 1, 0.973"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S163"
     downshifts      complement(501094)
                     /Source="Nicolas_upshifts"
                     /id="D223"
                     /incds=1
                     /nref=6
                     /ntot=171
                     /MaxReadThrough="3.51096"
                     /MaxDrop="3.79912"
                     /score="-8.86444162"
                     /energy="-10.2"
                     /TU="U372"
                     /idTUdmin="U371"
                     /TUdmin="-4"
                     /isTUend="TRUE"
     downshifts      501241
                     /Source="Nicolas_upshifts"
                     /id="D224"
                     /incds=0
                     /nref=143
                     /ntot=254
                     /MaxReadThrough="5.57908"
                     /MaxDrop="5.74865"
                     /score="29.7721113"
                     /energy="-8.9"
                     /TU="U367,U368,U369"
                     /idTUdmin="U366"
                     /TUdmin=799
                     /isTUend="FALSE"
     promotor_-35    501295..501302
                     /Source="Nicolas_upshift_promotors"
                     /id="U370"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.999000999001"
                     /xcortree=1992
                     /SigmaFactorBS="atatttgcaggttgctcaaatagagcaacttTTTTTGTTttc
                     aaaaaacataAACGATATAATAGTGAAATAacgaaaaaatatgttgttttttattggg
                     a"
                     /listShort="rsbRA, rsbS, rsbT, rsbU, rsbV, rsbW, sigB,
                     rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    501316..501335
                     /Source="Nicolas_upshift_promotors"
                     /id="U370"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.999000999001"
                     /xcortree=1992
                     /SigmaFactorBS="atatttgcaggttgctcaaatagagcaacttTTTTTGTTttc
                     aaaaaacataAACGATATAATAGTGAAATAacgaaaaaatatgttgttttttattggg
                     a"
                     /listShort="rsbRA, rsbS, rsbT, rsbU, rsbV, rsbW, sigB,
                     rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        501324
                     /Source="Nicolas_upshifts"
                     /id="U370"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.999000999001"
                     /xcortree=1992
                     /SigmaFactorBS="atatttgcaggttgctcaaatagagcaacttTTTTTGTTttc
                     aaaaaacataAACGATATAATAGTGAAATAacgaaaaaatatgttgttttttattggg
                     a"
                     /listShort="rsbRA, rsbS, rsbT, rsbU, rsbV, rsbW, sigB,
                     rsbX"
                     /GFF_Attribute="listLong"
     CDS             501376..502200
                     /gene="rsbRA"
                     /locus_tag="BSU_04670"
                     /old_locus_tag="BSU04670"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15312768, 15583165, 16963570, 17158665, 11157946,
                     20019076, 21362065, 22287516, 23320651, 28271471"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15312768, 15583165,
                     16963570, 17158665, 11157946, 20019076, 21362065,
                     22287516, 23320651, 28271471; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the anxiosome (stressosome);
                     positive regulation of sigma(B) activity in response to
                     salt and heat stress"
                     /protein_id="NP_388348.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04670"
                     /db_xref="EnsemblGenomes-Tr:CAB12274"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR014792"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="PDB:2BNL"
                     /db_xref="SubtiList:BG11090"
                     /db_xref="UniProtKB/Swiss-Prot:P42409"
                     /translation="MMSNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYEN
                     ISKEYIDILLLSVKDENAAESQISELALRAVQIGLSMKFLATALAEFWKRLYTKMNDK
                     RLPDQESTELIWQIDRFFSPINTEIFNQYSISWEKTVSLQKIALQELSAPLIPVFENI
                     TVMPLVGTIDTERAKRIMENLLNGVVKHRSQVVLIDITGVPVVDTMVAHHIIQASEAV
                     RLVGAKCLLAGIRPEIAQTIVNLGIDLSQVITKNTLQKGIQTALEMTDRKIVSLGE*"
     gene            501376..502200
                     /gene="rsbRA"
                     /locus_tag="BSU_04670"
                     /old_locus_tag="BSU04670"
     promotor_-10    complement(501510..501528)
                     /Source="Nicolas_upshift_promotors"
                     /id="U371"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2828
                     /SigmaFactorBS="gccagttcgctgatttggctttcagcagcattttcgtcCTTA
                     ACAGacagcagcagaatGTCGATATATTCTTTAGATatattttcatacacttggtcag
                     t"
                     /listShort="S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(501527)
                     /Source="Nicolas_upshifts"
                     /id="U371"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2828
                     /SigmaFactorBS="gccagttcgctgatttggctttcagcagcattttcgtcCTTA
                     ACAGacagcagcagaatGTCGATATATTCTTTAGATatattttcatacacttggtcag
                     t"
                     /listShort="S163"
                     /GFF_Attribute="listLong"
     S_feature       complement(501529..502128)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_519561_520160_c"
                     /HighExp="Etha, Sw, Gly, S6, S8, S7, B60, Salt, BT,
                     M9-stat"
                     /AntisenseName="rsbRA"
                     /AntisenseCor="-0.53924606340364201"
                     /AntisenseRegPval="-21"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigK"
                     /TUshortPSig="1, 0.973"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S164"
     promotor_-35    complement(501542..501549)
                     /Source="Nicolas_upshift_promotors"
                     /id="U371"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2828
                     /SigmaFactorBS="gccagttcgctgatttggctttcagcagcattttcgtcCTTA
                     ACAGacagcagcagaatGTCGATATATTCTTTAGATatattttcatacacttggtcag
                     t"
                     /listShort="S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(502117..502135)
                     /Source="Nicolas_upshift_promotors"
                     /id="U372"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=202
                     /SigmaFactorBS="tgaaacgatttttcgatccgtcatttccaatgcTGTTTGAat
                     tcctttttgcaGGGTATTCTTAGTTATAACttgggataaatcaatccccaggttgacg
                     a"
                     /listShort="S164, S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(502128)
                     /Source="Nicolas_upshifts"
                     /id="U372"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=202
                     /SigmaFactorBS="tgaaacgatttttcgatccgtcatttccaatgcTGTTTGAat
                     tcctttttgcaGGGTATTCTTAGTTATAACttgggataaatcaatccccaggttgacg
                     a"
                     /listShort="S164, S163"
                     /GFF_Attribute="listLong"
     S_feature       complement(502130..502718)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_520162_520750_c"
                     /HighExp="S6, S8, S7, BT, C30, S5, G135, C90, Gly, Fru"
                     /AntisenseName="rsbS"
                     /AntisenseCor="-0.57706416777859804"
                     /AntisenseRegPval="-24.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.973"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S165"
     promotor_-35    complement(502149..502155)
                     /Source="Nicolas_upshift_promotors"
                     /id="U372"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=202
                     /SigmaFactorBS="tgaaacgatttttcgatccgtcatttccaatgcTGTTTGAat
                     tcctttttgcaGGGTATTCTTAGTTATAACttgggataaatcaatccccaggttgacg
                     a"
                     /listShort="S164, S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             502205..502570
                     /gene="rsbS"
                     /locus_tag="BSU_04680"
                     /old_locus_tag="BSU04680"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15583165, 16963570, 17158665, 11157946, 23320651,
                     28271471"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15583165, 16963570,
                     17158665, 11157946, 23320651, 28271471; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="antagonist of RsbT"
                     /protein_id="NP_388349.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04680"
                     /db_xref="EnsemblGenomes-Tr:CAB12275"
                     /db_xref="GOA:P42410"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="SubtiList:BG11091"
                     /db_xref="UniProtKB/Swiss-Prot:P42410"
                     /translation="MRHPKIPILKLYNCLLVSIQWELDDQTALTFQEDLLNKIYETGA
                     NGVVIDLTSVDMIDSFIAKVLGDVITMSKLMGAKVVLTGIQPAVAVTLIELGIALEEI
                     ETALDLEQGLETLKRELGE*"
     gene            502205..502570
                     /gene="rsbS"
                     /locus_tag="BSU_04680"
                     /old_locus_tag="BSU04680"
     CDS             502574..502975
                     /gene="rsbT"
                     /locus_tag="BSU_04690"
                     /old_locus_tag="BSU04690"
                     /EC_number="2.7.11.1"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15583165, 16963570, 17158665, 11157946, 20019076,
                     20558511, 21362065, 21979936, 23320651"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15583165, 16963570,
                     17158665, 11157946, 20019076, 20558511, 21362065,
                     21979936, 23320651; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="switch protein/serine-threonine kinase;
                     controlsthe activity of the anxiosome (stressosome)"
                     /protein_id="NP_388350.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04690"
                     /db_xref="EnsemblGenomes-Tr:CAB12276"
                     /db_xref="GOA:P42411"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG11092"
                     /db_xref="UniProtKB/Swiss-Prot:P42411"
                     /translation="MNDQSCVRIMTEWDIVAARQLGRNVAKELGFGTVDQARITTAIS
                     ELARNIYLYAGKGQIGIEQVADRGKKGLKIIAEDQGPGIPDIRKVMEDGFSTSGGLGA
                     GLPGVKRLMDEFSLNSVAGEGTEIQAIKWLR*"
     gene            502574..502975
                     /gene="rsbT"
                     /locus_tag="BSU_04690"
                     /old_locus_tag="BSU04690"
     promotor_-10    complement(502716..502735)
                     /Source="Nicolas_upshift_promotors"
                     /id="U373"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1334
                     /SigmaFactorBS="ttttcaggcctttttttcctctgtctgcgacctgtTCAATTC
                     CAAtctgccctttgccGGCATATAAATAAATATTCCtggctaattctgaaatagccgt
                     t"
                     /listShort="S165, S164, S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(502733)
                     /Source="Nicolas_upshifts"
                     /id="U373"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1334
                     /SigmaFactorBS="ttttcaggcctttttttcctctgtctgcgacctgtTCAATTC
                     CAAtctgccctttgccGGCATATAAATAAATATTCCtggctaattctgaaatagccgt
                     t"
                     /listShort="S165, S164, S163"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(502749..502758)
                     /Source="Nicolas_upshift_promotors"
                     /id="U373"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.973026973026973"
                     /psig="0.973026973026973"
                     /xcortree=1334
                     /SigmaFactorBS="ttttcaggcctttttttcctctgtctgcgacctgtTCAATTC
                     CAAtctgccctttgccGGCATATAAATAAATATTCCtggctaattctgaaatagccgt
                     t"
                     /listShort="S165, S164, S163"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             502987..503994
                     /gene="rsbU"
                     /locus_tag="BSU_04700"
                     /old_locus_tag="BSU04700"
                     /EC_number="3.1.3.3"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15583165, 16963570, 17158665, 17303566, 21979936,
                     28461450"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15583165, 16963570,
                     17158665, 17303566, 21979936, 28461450; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="protein serine phosphatase; controls the
                     activity of the anxiosome (stressosome)"
                     /protein_id="NP_388351.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04700"
                     /db_xref="EnsemblGenomes-Tr:CAB12277"
                     /db_xref="GOA:P40399"
                     /db_xref="InterPro:IPR001932"
                     /db_xref="InterPro:IPR014787"
                     /db_xref="InterPro:IPR017944"
                     /db_xref="InterPro:IPR036457"
                     /db_xref="PDB:1W53"
                     /db_xref="PDB:2J6Y"
                     /db_xref="PDB:2J6Z"
                     /db_xref="PDB:2J70"
                     /db_xref="SubtiList:BG11057"
                     /db_xref="UniProtKB/Swiss-Prot:P40399"
                     /translation="MDFREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIEHQIPP
                     EEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGMAYQEHQTLRGIQQEIKSEIE
                     IAANVQQTLLGTKVPQEEALDIGAISVPAKQMSGDYYHFVKDKESINIAIADVIGKGI
                     PAALCMSMIKYAMDSLPETGIHPSQVLKNLNRVVEQNVDASMFITMFYANYNMDKHQF
                     TYASAGHEPGFYYSQKDNTFYDLEAKGLVLGISQDYDYKQFDQHLEKGDMIVLFSDGV
                     TECRTENGFLERPDLQKLIEEHMCSSAQEMVKNIYDSLLKLQDFQLHDDFTLIVLRRK
                     V*"
     gene            502987..503994
                     /gene="rsbU"
                     /locus_tag="BSU_04700"
                     /old_locus_tag="BSU04700"
     promotor_-35    503988..503994
                     /Source="Nicolas_upshift_promotors"
                     /id="U374"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=260
                     /SigmaFactorBS="cgatgattttacgttaattgttttgcggagaaaGGTTTAAcg
                     tctgtcagacgaGGGTATAAAGCAACTAGTGatttgaaggaaaatttgaggtgatacg
                     a"
                     /listShort="rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    504009..504027
                     /Source="Nicolas_upshift_promotors"
                     /id="U374"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=260
                     /SigmaFactorBS="cgatgattttacgttaattgttttgcggagaaaGGTTTAAcg
                     tctgtcagacgaGGGTATAAAGCAACTAGTGatttgaaggaaaatttgaggtgatacg
                     a"
                     /listShort="rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        504015
                     /Source="Nicolas_upshifts"
                     /id="U374"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=260
                     /SigmaFactorBS="cgatgattttacgttaattgttttgcggagaaaGGTTTAAcg
                     tctgtcagacgaGGGTATAAAGCAACTAGTGatttgaaggaaaatttgaggtgatacg
                     a"
                     /listShort="rsbV, rsbW, sigB, rsbX"
                     /GFF_Attribute="listLong"
     CDS             504056..504385
                     /gene="rsbV"
                     /locus_tag="BSU_04710"
                     /old_locus_tag="BSU04710"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15342585, 15583165, 16077134, 16885458, 20454630,
                     21979936, 27977677"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15342585, 15583165,
                     16077134, 16885458, 20454630, 21979936, 27977677; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-anti-sigma factor (antagonist of RsbW)"
                     /protein_id="NP_388352.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04710"
                     /db_xref="EnsemblGenomes-Tr:CAB12278"
                     /db_xref="GOA:P17903"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR003658"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="SubtiList:BG10733"
                     /db_xref="UniProtKB/Swiss-Prot:P17903"
                     /translation="MNINVDVKQNENDIQVNIAGEIDVYSAPVLREKLVPLAEQGADL
                     RICLKDVSYMDSTGLGVFVGTFKMVKKQGGSLKLENLSERLIRLFDITGLKDIIDISA
                     KSEGGVQ*"
     gene            504056..504385
                     /gene="rsbV"
                     /locus_tag="BSU_04710"
                     /old_locus_tag="BSU04710"
     CDS             504382..504864
                     /gene="rsbW"
                     /locus_tag="BSU_04720"
                     /old_locus_tag="BSU04720"
                     /EC_number="2.7.11.1"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15342585, 15583165, 16077134, 16885458, 21979936,
                     27977677"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15342585, 15583165,
                     16077134, 16885458, 21979936, 27977677; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="switch protein/serine kinase and anti-sigma
                     factor (inhibitory sigma-B binding protein)"
                     /protein_id="NP_388353.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04720"
                     /db_xref="EnsemblGenomes-Tr:CAB12279"
                     /db_xref="GOA:P17904"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR010193"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG10734"
                     /db_xref="UniProtKB/Swiss-Prot:P17904"
                     /translation="MKNNADYIEMKVPAQPEYVGIIRLTLSGVASRMGYTYDEIEDLK
                     IAVSEACTNAVQHAYKEDKNGEVSIRFGVFEDRLEVIVADEGDSFDFDQKQQDLGPYT
                     PSHTVDQLSEGGLGLYLMETLMDEVRVQNHSGVTVAMTKYLNGERVDHDTTIKNYETN
                     *"
     gene            504382..504864
                     /gene="rsbW"
                     /locus_tag="BSU_04720"
                     /old_locus_tag="BSU04720"
     CDS             504830..505618
                     /gene="sigB"
                     /locus_tag="BSU_04730"
                     /old_locus_tag="BSU04730"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15312768, 15805528, 16077134, 16267279, 16321960,
                     17158665, 28271471"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15312768, 15805528,
                     16077134, 16267279, 16321960, 17158665, 28271471; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-37 factor (sigma(B))"
                     /protein_id="NP_388354.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04730"
                     /db_xref="EnsemblGenomes-Tr:CAB12280"
                     /db_xref="GOA:P06574"
                     /db_xref="InterPro:IPR000943"
                     /db_xref="InterPro:IPR007624"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR007630"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="InterPro:IPR014288"
                     /db_xref="InterPro:IPR014322"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG10735"
                     /db_xref="UniProtKB/Swiss-Prot:P06574"
                     /translation="MTQPSKTTKLTKDEVDRLISDYQTKQDEQAQETLVRVYTNLVDM
                     LAKKYSKGKSFHEDLRQVGMIGLLGAIKRYDPVVGKSFEAFAIPTIIGEIKRFLRDKT
                     WSVHVPRRIKELGPRIKMAVDQLTTETQRSPKVEEIAEFLDVSEEEVLETMEMGKSYQ
                     ALSVDHSIEADSDGSTVTILDIVGSQEDGYERVNQQLMLQSVLHVLSDREKQIIDLTY
                     IQNKSQKETGDILGISQMHVSRLQRKAVKKLREALIEDPSMELM*"
     gene            504830..505618
                     /gene="sigB"
                     /locus_tag="BSU_04730"
                     /old_locus_tag="BSU04730"
     CDS             505618..506217
                     /gene="rsbX"
                     /locus_tag="BSU_04740"
                     /old_locus_tag="BSU04740"
                     /EC_number="3.1.3.3"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10671474, 12950928, 15466036, 9068644, 9658013,
                     21979936, 26057679"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10671474, 12950928,
                     15466036, 9068644, 9658013, 21979936, 26057679; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine phosphatase"
                     /protein_id="NP_388355.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04740"
                     /db_xref="EnsemblGenomes-Tr:CAB12281"
                     /db_xref="GOA:P17906"
                     /db_xref="InterPro:IPR001932"
                     /db_xref="InterPro:IPR036457"
                     /db_xref="PDB:3W40"
                     /db_xref="PDB:3W41"
                     /db_xref="PDB:3W42"
                     /db_xref="PDB:3W43"
                     /db_xref="PDB:3W44"
                     /db_xref="PDB:3W45"
                     /db_xref="SubtiList:BG10736"
                     /db_xref="UniProtKB/Swiss-Prot:P17906"
                     /translation="MIQVEENEHIQTLVYQLNKEGKSICGDSFFMKADDKELICAVAD
                     GLGSGSLANESSAAIKDLVENYASEDVESIIERCNQAMKNKRGATASILKINFEQRQF
                     TYCSVGNVRFILHSPSGESFYPLPISGYLSGKPQKYKTHTATYEKGSKFIIHTDGLNV
                     PDIRSHLKKGQSVEEISNSLKMYTTSRKDDLTYILGQLS*"
     gene            505618..506217
                     /gene="rsbX"
                     /locus_tag="BSU_04740"
                     /old_locus_tag="BSU04740"
     downshifts      506203
                     /Source="Nicolas_upshifts"
                     /id="D225"
                     /incds=0
                     /nref=267
                     /ntot=278
                     /MaxReadThrough="2.46753"
                     /MaxDrop="7.92167"
                     /score="1.26147577"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U369"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     promotor_-35    506261..506267
                     /Source="Nicolas_upshift_promotors"
                     /id="U375"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.427572427572428"
                     /psig=1
                     /xcortree=2529
                     /SigmaFactorBS="gctggacatccggcttcttttttttgcGGTTGACtattaata
                     agtgcgCTTATTATAATTAATAAGTGaacttatcattctgggagcttatgggatgtgg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    506282..506301
                     /Source="Nicolas_upshift_promotors"
                     /id="U375"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.427572427572428"
                     /psig=1
                     /xcortree=2529
                     /SigmaFactorBS="gctggacatccggcttcttttttttgcGGTTGACtattaata
                     agtgcgCTTATTATAATTAATAAGTGaacttatcattctgggagcttatgggatgtgg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        506294
                     /Source="Nicolas_upshifts"
                     /id="U375"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.427572427572428"
                     /psig=1
                     /xcortree=2529
                     /SigmaFactorBS="gctggacatccggcttcttttttttgcGGTTGACtattaata
                     agtgcgCTTATTATAATTAATAAGTGaacttatcattctgggagcttatgggatgtgg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             506328..506444
                     /locus_tag="BSU_04745"
                     /old_locus_tag="BSU04745"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513945.1"
                     /translation="MWNYEYTAIADVDVGKPGTVIRKQKQWINGRRVLHQIL*"
     gene            506328..506444
                     /locus_tag="BSU_04745"
                     /old_locus_tag="BSU04745"
     CDS             506460..506753
                     /gene="ydcF"
                     /locus_tag="BSU_04750"
                     /old_locus_tag="BSU04750"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388356.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04750"
                     /db_xref="EnsemblGenomes-Tr:CAB12282"
                     /db_xref="SubtiList:BG12093"
                     /db_xref="UniProtKB/Swiss-Prot:P96623"
                     /translation="MERKEHCFCKEKQFSYGLSMWRNIGRFLSWSTCPHSNVIMEFFH
                     VLQKQKEDLCITYGIVLEGAEAKKWGEIIGTELSKDMPTAVSRLVHLYGGVIK*"
     gene            506460..506753
                     /gene="ydcF"
                     /locus_tag="BSU_04750"
                     /old_locus_tag="BSU04750"
     promotor_-35    506721..506729
                     /Source="Nicolas_upshift_promotors"
                     /id="U376"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.65034965034965"
                     /psig=1
                     /xcortree=2272
                     /SigmaFactorBS="agacatgccgacggctgtcagcaggCTTGTCCATctttacgg
                     aggAGTGATAAAATGAACACAAAttactggatcggcgttgtgtcagagcaacatgtat
                     t"
                     /listShort="ydcG, ydcH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    506741..506760
                     /Source="Nicolas_upshift_promotors"
                     /id="U376"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.65034965034965"
                     /psig=1
                     /xcortree=2272
                     /SigmaFactorBS="agacatgccgacggctgtcagcaggCTTGTCCATctttacgg
                     aggAGTGATAAAATGAACACAAAttactggatcggcgttgtgtcagagcaacatgtat
                     t"
                     /listShort="ydcG, ydcH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             506750..507190
                     /gene="ydcG"
                     /locus_tag="BSU_04760"
                     /old_locus_tag="BSU04760"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388357.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04760"
                     /db_xref="EnsemblGenomes-Tr:CAB12283"
                     /db_xref="InterPro:IPR002740"
                     /db_xref="InterPro:IPR015947"
                     /db_xref="InterPro:IPR022996"
                     /db_xref="SubtiList:BG12094"
                     /db_xref="UniProtKB/Swiss-Prot:P96624"
                     /translation="MNTNYWIGVVSEQHVLKGAAGGFAQLCHGKKAPLAKMKEGDWLI
                     YYSPRDAYPDGKLLRSFTAIGKVKSGNIYPYQMAPNFIPYRLDIDYYPCHKIGFYDIK
                     SKLEFVQETKHLGFLFRRGHFEISKKDFLTIAQAMGVNISGMAL*"
     gene            506750..507190
                     /gene="ydcG"
                     /locus_tag="BSU_04760"
                     /old_locus_tag="BSU04760"
     upshifts        506756
                     /Source="Nicolas_upshifts"
                     /id="U376"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.65034965034965"
                     /psig=1
                     /xcortree=2272
                     /SigmaFactorBS="agacatgccgacggctgtcagcaggCTTGTCCATctttacgg
                     aggAGTGATAAAATGAACACAAAttactggatcggcgttgtgtcagagcaacatgtat
                     t"
                     /listShort="ydcG, ydcH"
                     /GFF_Attribute="listLong"
     S_feature       complement(506989..510044)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_525021_528076_c"
                     /HighExp="S6, S8, S7, S5, B36, S4, B60, BT, Pyr, C30"
                     /AntisenseName="ydcI"
                     /AntisenseCor="-0.61304426345041496"
                     /AntisenseRegPval="-28.4"
                     /CDS_PredictionProba="0.40759499999999999"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S166"
     CDS             507174..507617
                     /gene="ydcH"
                     /locus_tag="BSU_04770"
                     /old_locus_tag="BSU04770"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12088660; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388358.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04770"
                     /db_xref="EnsemblGenomes-Tr:CAB12284"
                     /db_xref="GOA:P96625"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12095"
                     /db_xref="UniProtKB/Swiss-Prot:P96625"
                     /translation="MEWHSKFSGPNTSPGFLLWQATQSWQRKVGKALAEFDLTHVQFV
                     LLTSCKYMIAHGETVTQKKLASFSQTNIMMVSEVVRTLEKKGFIERSKNPQDKREVLL
                     SLTEIGGEKVTAALPIVEKIDQAFFAAAMKKENFLSGLQELLKHE*"
     gene            507174..507617
                     /gene="ydcH"
                     /locus_tag="BSU_04770"
                     /old_locus_tag="BSU04770"
     downshifts      507592
                     /Source="Nicolas_upshifts"
                     /id="D226"
                     /incds=0
                     /nref=11
                     /ntot=147
                     /MaxReadThrough="2.17786"
                     /MaxDrop="3.86856"
                     /score="21.3746204"
                     /energy="-6.8"
                     /TU="NA"
                     /idTUdmin="U376"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    507648..507649
                     /Source="Nicolas_upshift_promotors"
                     /id="U377"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.712287712287712"
                     /psig="0.997002997002997"
                     /xcortree=1998
                     /SigmaFactorBS="gaaacatgagtaaagatacgggcagcgccagctgtctttttt
                     tATgtgtttttttcggttTTTGATACACTAGAGAAAGAacgacaaaattggaggcttt
                     g"
                     /listShort="ydcI, S167, ydcK"
                     /listLong="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2"
                     /label="promotor_-35"
     promotor_-10    507665..507684
                     /Source="Nicolas_upshift_promotors"
                     /id="U377"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.712287712287712"
                     /psig="0.997002997002997"
                     /xcortree=1998
                     /SigmaFactorBS="gaaacatgagtaaagatacgggcagcgccagctgtctttttt
                     tATgtgtttttttcggttTTTGATACACTAGAGAAAGAacgacaaaattggaggcttt
                     g"
                     /listShort="ydcI, S167, ydcK"
                     /listLong="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2"
                     /label="promotor_-10"
     upshifts        507665
                     /Source="Nicolas_upshifts"
                     /id="U377"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.712287712287712"
                     /psig="0.997002997002997"
                     /xcortree=1998
                     /SigmaFactorBS="gaaacatgagtaaagatacgggcagcgccagctgtctttttt
                     tATgtgtttttttcggttTTTGATACACTAGAGAAAGAacgacaaaattggaggcttt
                     g"
                     /listShort="ydcI, S167, ydcK"
                     /listLong="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2"
     CDS             507711..509870
                     /gene="tex"
                     /locus_tag="BSU_04780"
                     /old_locus_tag="BSU04780"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8755871, 12910271, 15383836,
                     16282592; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA helicase transcriptional accessory protein"
                     /protein_id="NP_388359.2"
                     /db_xref="EnsemblGenomes-Gn:BSU04780"
                     /db_xref="EnsemblGenomes-Tr:CAB12285"
                     /db_xref="GOA:O31489"
                     /db_xref="InterPro:IPR003029"
                     /db_xref="InterPro:IPR006641"
                     /db_xref="InterPro:IPR010994"
                     /db_xref="InterPro:IPR012337"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR018974"
                     /db_xref="InterPro:IPR022967"
                     /db_xref="InterPro:IPR023319"
                     /db_xref="InterPro:IPR023323"
                     /db_xref="InterPro:IPR032639"
                     /db_xref="SubtiList:BG12096"
                     /db_xref="UniProtKB/Swiss-Prot:O31489"
                     /translation="METSALLKQQIAKEIGLSQKHVESVIRLLEDGNTVPFIARYRKE
                     QTGSMDEVQIQTISERWQYIQNLNQRKEEVIRLIAEQDKLTDNLKRKIEQSVKLQEVE
                     DLYRPYKQKRKTKATVAKSKGLEPLADYILTLPQDDHLAATADQYISEEKEVFTREEA
                     IEGAKHIIAEQISDEPTFRKWIRQETFKRGTIKSAAGKSADTDEKNVYEMYYEYEEPI
                     AKVVPHRVLAMNRGEKEDILKVAIEPPADHIKAYLEKQIIKNRSTSVREILQETIEDS
                     YKRLIQPAIEREIRKELSEKADEQAIHIFSENLRKLLLQPPMKGKTVLGVDPAFRTGC
                     KLAVSDETGKVLKIDVIYPHAPVNKTKEAHEKVKKILEQYQVEMVAIGNGTASRETEQ
                     FIVNVLRDMPRKIYYVIVNEAGASVYSASELAREEFPDLKVEERSAVSIARRLQDPLA
                     ELVKIDPKSVGVGQYQHDVSQKRLNESLRFVVETVVNQVGVNVNTASAALLQYVAGLS
                     KSVAGNVVKKREEIGKFSNRKELKDIPRLGAKTYEQCIGFLRVQEGTEPLDRTGIHPE
                     SYKETKALLKKLGLSTEHIGTAELKDKINQLALSETAKELGIGEITLKDICEQLTRPE
                     RDPRDKVPKPLLKTDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLS
                     NQFVKHPLDVVSVGDIVTVWVDGVDVQKGRVSLSMVK*"
     gene            507711..509870
                     /gene="tex"
                     /locus_tag="BSU_04780"
                     /old_locus_tag="BSU04780"
     misc_feature    509858..509877
                     /Source="Nicolas_upshift_promotors"
                     /id="U378"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig="0.999000999001"
                     /xcortree=2162
                     /SigmaFactorBS="gacggcgtagatgtacaaaaaggcagagtatcgctgtcTATG
                     GTAAAATAAAAGCACTgcttacgagcagtgttttttcctatagaaataccagcattga
                     t"
                     /listShort="S167, ydcK, S168, trnS-Asn, trnS-Ser,
                     trnS-Glu, trnS-Gln, trnS-Lys, trnS-Leu1"
                     /listLong="trnS-Leu2, S169"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       509880..510096
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_527912_528128"
                     /HighExp="Cold, Etha, LBGstat, dia5, LPhT, T4.0H, dia15,
                     T3.0H, T2.30H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.999, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S167"
     upshifts        509880
                     /Source="Nicolas_upshifts"
                     /id="U378"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig="0.999000999001"
                     /xcortree=2162
                     /SigmaFactorBS="gacggcgtagatgtacaaaaaggcagagtatcgctgtcTATG
                     GTAAAATAAAAGCACTgcttacgagcagtgttttttcctatagaaataccagcattga
                     t"
                     /listShort="S167, ydcK, S168, trnS-Asn, trnS-Ser,
                     trnS-Glu, trnS-Gln, trnS-Lys, trnS-Leu1"
                     /listLong="trnS-Leu2, S169"
     CDS             complement(509880..509993)
                     /gene="cmpA"
                     /locus_tag="BSU_04785"
                     /old_locus_tag="BSU04785"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:22463703, 26387458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22463703, 26387458;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="factor allowing degradation of SpoIVA by ClpXP"
                     /protein_id="YP_009513946.1"
                     /translation="MPNWLKKQMQKAFLEKDNYQIKLLNQCWYFYRKKHCS*"
     gene            complement(509880..509993)
                     /gene="cmpA"
                     /locus_tag="BSU_04785"
                     /old_locus_tag="BSU04785"
     promotor_-10    complement(510033..510052)
                     /Source="Nicolas_upshift_promotors"
                     /id="U379"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1320
                     /SigmaFactorBS="tctttgttatccatggtgcacctcacttaaaaaacATTGAAC
                     GGgacaattcaccgttCGCATACAATATGGTAATCActgtccctcttatgataaaagc
                     t"
                     /listShort="S166"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(510050)
                     /Source="Nicolas_upshifts"
                     /id="U379"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1320
                     /SigmaFactorBS="tctttgttatccatggtgcacctcacttaaaaaacATTGAAC
                     GGgacaattcaccgttCGCATACAATATGGTAATCActgtccctcttatgataaaagc
                     t"
                     /listShort="S166"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(510067..510075)
                     /Source="Nicolas_upshift_promotors"
                     /id="U379"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1320
                     /SigmaFactorBS="tctttgttatccatggtgcacctcacttaaaaaacATTGAAC
                     GGgacaattcaccgttCGCATACAATATGGTAATCActgtccctcttatgataaaagc
                     t"
                     /listShort="S166"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             510097..510549
                     /gene="ydcK"
                     /locus_tag="BSU_04790"
                     /old_locus_tag="BSU04790"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388360.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04790"
                     /db_xref="EnsemblGenomes-Tr:CAB12286"
                     /db_xref="GOA:P96628"
                     /db_xref="InterPro:IPR006640"
                     /db_xref="InterPro:IPR023524"
                     /db_xref="InterPro:IPR035240"
                     /db_xref="SubtiList:BG12098"
                     /db_xref="UniProtKB/Swiss-Prot:P96628"
                     /translation="MDNKELQKLTEDISETYFKKPFRHQALFNDRLKTTGGRYLLTSH
                     NIELNRKYLIEHGREELIGIIKHELCHYHLHLEGKGYKHRDRDFRMLLQQVNAPRFCT
                     PLKKKAENKKTYMYICTTCGQQYIKKRAMNPDRYRCGKCRGKIKRIFS*"
     gene            510097..510549
                     /gene="ydcK"
                     /locus_tag="BSU_04790"
                     /old_locus_tag="BSU04790"
     promotor_-35    510555..510561
                     /Source="Nicolas_upshift_promotors"
                     /id="U380"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2626
                     /SigmaFactorBS="gaaaaataaaaagaattttttcgtgaaaaagGTTGACGaata
                     tggcaagcctATGTTACATTATAAAAGTCGtcacgagagataaataaaaacatttacc
                     t"
                     /listShort="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2, S169"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    510576..510595
                     /Source="Nicolas_upshift_promotors"
                     /id="U380"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2626
                     /SigmaFactorBS="gaaaaataaaaagaattttttcgtgaaaaagGTTGACGaata
                     tggcaagcctATGTTACATTATAAAAGTCGtcacgagagataaataaaaacatttacc
                     t"
                     /listShort="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2, S169"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       510584..510671
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_528616_528703"
                     /HighExp="C30, LBGstat, Cold, UNK1, GM 25, GM 120, GM 15,
                     Heat, T-3.40H, GM 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.997"
                     /label="S168"
     upshifts        510584
                     /Source="Nicolas_upshifts"
                     /id="U380"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2626
                     /SigmaFactorBS="gaaaaataaaaagaattttttcgtgaaaaagGTTGACGaata
                     tggcaagcctATGTTACATTATAAAAGTCGtcacgagagataaataaaaacatttacc
                     t"
                     /listShort="S168, trnS-Asn, trnS-Ser, trnS-Glu, trnS-Gln,
                     trnS-Lys, trnS-Leu1, trnS-Leu2, S169"
                     /GFF_Attribute="listLong"
     downshifts      complement(510616)
                     /Source="Nicolas_upshifts"
                     /id="D227"
                     /incds=0
                     /nref=1
                     /ntot=28
                     /MaxReadThrough="2.50342"
                     /MaxDrop="3.97305"
                     /score="8.78044068"
                     /energy="-9.2"
                     /TU="NA"
                     /idTUdmin="U381"
                     /TUdmin=704
                     /isTUend="FALSE"
     tRNA            510672..510746
                     /gene="trnS-Asn"
                     /locus_tag="BSU_tRNA_45"
                     /product="tRNA-Asn"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Asn(GUU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            510672..510746
                     /gene="trnS-Asn"
                     /locus_tag="BSU_tRNA_45"
     tRNA            510751..510841
                     /gene="trnS-Ser"
                     /locus_tag="BSU_tRNA_46"
                     /product="tRNA-Ser"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ser(GCU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            510751..510841
                     /gene="trnS-Ser"
                     /locus_tag="BSU_tRNA_46"
     tRNA            510871..510942
                     /gene="trnS-Glu"
                     /locus_tag="BSU_tRNA_47"
                     /product="tRNA-Glu"
                     /inference="profile:tRNAscan:1.23"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            510871..510942
                     /gene="trnS-Glu"
                     /locus_tag="BSU_tRNA_47"
     tRNA            510954..511028
                     /gene="trnS-Gln"
                     /locus_tag="BSU_tRNA_48"
                     /product="tRNA-Gln"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gln(UUG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            510954..511028
                     /gene="trnS-Gln"
                     /locus_tag="BSU_tRNA_48"
     tRNA            511055..511130
                     /gene="trnS-Lys"
                     /locus_tag="BSU_tRNA_49"
                     /product="tRNA-Lys"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Lys(UUU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            511055..511130
                     /gene="trnS-Lys"
                     /locus_tag="BSU_tRNA_49"
     tRNA            511142..511223
                     /gene="trnS-Leu1"
                     /locus_tag="BSU_tRNA_50"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Leu(UAG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            511142..511223
                     /gene="trnS-Leu1"
                     /locus_tag="BSU_tRNA_50"
     downshifts      511288
                     /Source="Nicolas_upshifts"
                     /id="D228"
                     /incds=0
                     /nref=3
                     /ntot=136
                     /MaxReadThrough="6.94232"
                     /MaxDrop="3.5424"
                     /score="34.987622"
                     /energy="-13.7"
                     /TU="U380"
                     /idTUdmin="U378"
                     /TUdmin=0
                     /isTUend="TRUE"
     tRNA            511304..511390
                     /gene="trnS-Leu2"
                     /locus_tag="BSU_tRNA_51"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Leu (GAG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            511304..511390
                     /gene="trnS-Leu2"
                     /locus_tag="BSU_tRNA_51"
     downshifts      511377
                     /Source="Nicolas_upshifts"
                     /id="D229"
                     /incds=0
                     /nref=82
                     /ntot=235
                     /MaxReadThrough="4.38481"
                     /MaxDrop="5.23398"
                     /score="34.987622"
                     /energy="-13.7"
                     /TU="U380"
                     /idTUdmin="U378"
                     /TUdmin=89
                     /isTUend="FALSE"
     S_feature       511422..512320
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_529454_530352"
                     /HighExp="Cold, G180, G135, Paraq, Oxctl, C30, G150, H2O2,
                     Fru, Lbexp"
                     /AntisenseName="ydcL"
                     /AntisenseCor="-0.23338643759911901"
                     /AntisenseRegPval="-4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S169"
     downshifts      complement(511445)
                     /Source="Nicolas_upshifts"
                     /id="D230"
                     /incds=0
                     /nref=96
                     /ntot=231
                     /MaxReadThrough="2.93365"
                     /MaxDrop="6.05127"
                     /score="8.78044068"
                     /energy="-9.2"
                     /TU="U381"
                     /idTUdmin="U381"
                     /TUdmin="-125"
                     /isTUend="FALSE"
     CDS             complement(511473..512579)
                     /gene="ydcL"
                     /locus_tag="BSU_04800"
                     /old_locus_tag="BSU04800"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 22505685; Product type h :
                     extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: integrase"
                     /protein_id="NP_388361.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04800"
                     /db_xref="EnsemblGenomes-Tr:CAB12287"
                     /db_xref="GOA:P96629"
                     /db_xref="InterPro:IPR002104"
                     /db_xref="InterPro:IPR004107"
                     /db_xref="InterPro:IPR010998"
                     /db_xref="InterPro:IPR011010"
                     /db_xref="InterPro:IPR013762"
                     /db_xref="SubtiList:BG12099"
                     /db_xref="UniProtKB/Swiss-Prot:P96629"
                     /translation="MSVKKLENGQYQVDVSFGFDPITGERIRTRPVASTRKEALELEA
                     KLRREFQEERARKSRSVSFPTLISIYLASCEIDSKPNYYQNQKYIINKHISDYFLKSD
                     IQKITHREITDFRKHLMETGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLP
                     LTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDKILL
                     EIDVHKSCTWLDGQFVVTTPKTKNSIRRVSINKKLLKLLERWKEAQEELFNELGIRHS
                     HDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDFRHSHVALLIHQGEDYITIK
                     ERLGHGSVKTTIDVYGHLYPNKQKEMADKLDDLL*"
     gene            complement(511473..512579)
                     /gene="ydcL"
                     /locus_tag="BSU_04800"
                     /old_locus_tag="BSU04800"
     CDS             complement(512592..513101)
                     /gene="immA"
                     /locus_tag="BSU_04810"
                     /old_locus_tag="BSU04810"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:18761623, 21036995, 22505685"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 18761623, 21036995,
                     22505685; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: site-specific protease
                     cleaving ImmR"
                     /protein_id="NP_388362.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04810"
                     /db_xref="EnsemblGenomes-Tr:CAB12288"
                     /db_xref="GOA:P96630"
                     /db_xref="InterPro:IPR010359"
                     /db_xref="SubtiList:BG12100"
                     /db_xref="UniProtKB/Swiss-Prot:P96630"
                     /translation="MITIYTSKGIKHKVQSVIKTHGTNNVYEICDIQKIYILKNDLGQ
                     ANGLLQHDKATDQYLIHINENLQHQQFVIAHELGHYFLHKRLNTFKVVNCSKVLKDKL
                     EHQASLFASELILTDKMLNEALPYIQGFSKEQIAAYFNVPSFVTDYKLSQIGSFSNRI
                     YSHEISAFG*"
     gene            complement(512592..513101)
                     /gene="immA"
                     /locus_tag="BSU_04810"
                     /old_locus_tag="BSU04810"
     downshifts      complement(512904)
                     /Source="Nicolas_upshifts"
                     /id="D231"
                     /incds=1
                     /nref=12
                     /ntot=39
                     /MaxReadThrough="6.14325"
                     /MaxDrop="3.22989"
                     /score="17.0287275"
                     /energy="-11.8"
                     /TU="U381"
                     /idTUdmin="U384"
                     /TUdmin=1518
                     /isTUend="FALSE"
     CDS             complement(513098..513481)
                     /gene="immR"
                     /locus_tag="BSU_04820"
                     /old_locus_tag="BSU04820"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8083175, 17511812, 22505685"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8083175, 17511812,
                     22505685; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: transcriptional
                     regulator(Xre family)"
                     /protein_id="NP_388363.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04820"
                     /db_xref="EnsemblGenomes-Tr:CAB12289"
                     /db_xref="GOA:P96631"
                     /db_xref="InterPro:IPR001387"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="InterPro:IPR027910"
                     /db_xref="SubtiList:BG12101"
                     /db_xref="UniProtKB/Swiss-Prot:P96631"
                     /translation="MSLGKRLKEARQKAGYTQKEAAEKLNIGNNNLSNYERDYRDPDT
                     DTLLKLSNLYNVSTDYLLGKDEVSKKNETDLLNKTINEAIQELKDEDTLLFMNDGEFD
                     EETARLVKKALKNGIKFIDELKKKE*"
     gene            complement(513098..513481)
                     /gene="immR"
                     /locus_tag="BSU_04820"
                     /old_locus_tag="BSU04820"
     promotor_-10    complement(513510..513529)
                     /Source="Nicolas_upshift_promotors"
                     /id="U381"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig=1
                     /xcortree=3028
                     /SigmaFactorBS="tagaattatttatttaacttataggtgaaatTAATGAATtct
                     ccaaaaaatgtTGTTATTATTTTTATAAAAAtcaactctttgtgaaatggatgataaa
                     a"
                     /listShort="immR, immA, ydcL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(513522)
                     /Source="Nicolas_upshifts"
                     /id="U381"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig=1
                     /xcortree=3028
                     /SigmaFactorBS="tagaattatttatttaacttataggtgaaatTAATGAATtct
                     ccaaaaaatgtTGTTATTATTTTTATAAAAAtcaactctttgtgaaatggatgataaa
                     a"
                     /listShort="immR, immA, ydcL"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(513544..513551)
                     /Source="Nicolas_upshift_promotors"
                     /id="U381"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig=1
                     /xcortree=3028
                     /SigmaFactorBS="tagaattatttatttaacttataggtgaaatTAATGAATtct
                     ccaaaaaatgtTGTTATTATTTTTATAAAAAtcaactctttgtgaaatggatgataaa
                     a"
                     /listShort="immR, immA, ydcL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    513681..513688
                     /Source="Nicolas_upshift_promotors"
                     /id="U382"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=2860
                     /SigmaFactorBS="tgttcaaaaaaatacactttaaggtgaattttgTGTTGACTt
                     acacgaaaaggagTTTTATAATAAAGTTAATTCacaaagagttgagttaacgaggagg
                     t"
                     /listShort="sacV, ydzL, ydcO, S171, ydcP, ydcQ, ydcR"
                     /listLong="S172, ydcS, ydcT, yddA, yddB, yddC, yddD, yddE,
                     yddF, yddG, yddH, yddI, yddJ"
                     /label="promotor_-35"
     promotor_-10    513703..513722
                     /Source="Nicolas_upshift_promotors"
                     /id="U382"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=2860
                     /SigmaFactorBS="tgttcaaaaaaatacactttaaggtgaattttgTGTTGACTt
                     acacgaaaaggagTTTTATAATAAAGTTAATTCacaaagagttgagttaacgaggagg
                     t"
                     /listShort="sacV, ydzL, ydcO, S171, ydcP, ydcQ, ydcR"
                     /listLong="S172, ydcS, ydcT, yddA, yddB, yddC, yddD, yddE,
                     yddF, yddG, yddH, yddI, yddJ"
                     /label="promotor_-10"
     upshifts        513708
                     /Source="Nicolas_upshifts"
                     /id="U382"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=2860
                     /SigmaFactorBS="tgttcaaaaaaatacactttaaggtgaattttgTGTTGACTt
                     acacgaaaaggagTTTTATAATAAAGTTAATTCacaaagagttgagttaacgaggagg
                     t"
                     /listShort="sacV, ydzL, ydcO, S171, ydcP, ydcQ, ydcR"
                     /listLong="S172, ydcS, ydcT, yddA, yddB, yddC, yddD, yddE,
                     yddF, yddG, yddH, yddI, yddJ"
     CDS             513755..513949
                     /gene="xis"
                     /locus_tag="BSU_04830"
                     /old_locus_tag="BSU04830"
                     /function="16.3: Control"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:3269394, 17511812, 22505685, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3269394, 17511812,
                     22505685, 26013486; Product type h: extrachromosomal
                     origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: excisionase"
                     /protein_id="NP_388364.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04830"
                     /db_xref="EnsemblGenomes-Tr:CAB12290"
                     /db_xref="GOA:O31490"
                     /db_xref="SubtiList:BG12670"
                     /db_xref="UniProtKB/Swiss-Prot:O31490"
                     /translation="MKGEFLTARDIQKILGVKQAKSYDIIRTLNAQMKEEGYMVIQGK
                     VSRAKFEECYCYKGPKSQTG*"
     gene            513755..513949
                     /gene="xis"
                     /locus_tag="BSU_04830"
                     /old_locus_tag="BSU04830"
     CDS             513946..514206
                     /gene="ydzL"
                     /locus_tag="BSU_04839"
                     /old_locus_tag="BSU04839"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22505685, 26013486; Product type
                     h:extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: conserved protein of
                     unknown function"
                     /protein_id="YP_003097681.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04839"
                     /db_xref="EnsemblGenomes-Tr:CAX52552"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V5"
                     /translation="MIFINIDITNSFMKEAVPLARQMEGDWIARMKIALNSVIINHYL
                     NLPLTIENVNELLRKGVSYRRICKHYGIGRKDIEKLRQSSVV*"
     gene            513946..514206
                     /gene="ydzL"
                     /locus_tag="BSU_04839"
                     /old_locus_tag="BSU04839"
     CDS             514260..514520
                     /gene="ydcO"
                     /locus_tag="BSU_04840"
                     /old_locus_tag="BSU04840"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22505685, 26013486; Product type
                     h:extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: conserved protein of
                     unknown function"
                     /protein_id="NP_388365.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04840"
                     /db_xref="EnsemblGenomes-Tr:CAB12291"
                     /db_xref="SubtiList:BG12102"
                     /db_xref="UniProtKB/Swiss-Prot:P96632"
                     /translation="MKIRVNATIITDVEALKADKDLNHFKDYATCETFVVDADNHLKA
                     NEEISELLKGWDWWCIWSTRPLSKKDNQVFTLYNDDLYNLCR*"
     gene            514260..514520
                     /gene="ydcO"
                     /locus_tag="BSU_04840"
                     /old_locus_tag="BSU04840"
     S_feature       complement(514380..514620)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_532412_532652_c"
                     /HighExp="T5.0H, T4.0H, T3.0H, Lbstat, T3.30H, T2.0H,
                     Cold, Gly, S2, T2.30H"
                     /AntisenseName="ydcO"
                     /AntisenseCor="0.131178357364787"
                     /AntisenseRegPval="-1.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.987"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S170"
     promotor_-35    514546..514553
                     /Source="Nicolas_upshift_promotors"
                     /id="U383"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig="0.99000999000999"
                     /xcortree=2861
                     /SigmaFactorBS="tgtcgataggagtgtttgttccttgaaaactacaTATAGACA
                     aaaaaagcgccttgACGAATGATCATCAAGAACGccggaaaataaaaactagacactt
                     t"
                     /listShort="S171, ydcP, ydcQ, ydcR, S172, ydcS, ydcT,
                     yddA, yddB, yddC, yddD, yddE, yddF, yddG, yddH, yddI,
                     yddJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_RNA        complement(514551..514610)
                     /gene="sncO"
                     /locus_tag="BSU_misc_RNA_65"
                     /product="ICEBs1 mobile element: conserved small
                     untranslated RNA"
                     /experiment="publication(s) with functional evidences,
                     PMID:20525796, 22505685"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20525796, 22505685;
                     Product type n: RNA"
     gene            complement(514551..514610)
                     /gene="sncO"
                     /locus_tag="BSU_misc_RNA_65"
     promotor_-10    514568..514587
                     /Source="Nicolas_upshift_promotors"
                     /id="U383"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig="0.99000999000999"
                     /xcortree=2861
                     /SigmaFactorBS="tgtcgataggagtgtttgttccttgaaaactacaTATAGACA
                     aaaaaagcgccttgACGAATGATCATCAAGAACGccggaaaataaaaactagacactt
                     t"
                     /listShort="S171, ydcP, ydcQ, ydcR, S172, ydcS, ydcT,
                     yddA, yddB, yddC, yddD, yddE, yddF, yddG, yddH, yddI,
                     yddJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       514572..514889
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_532604_532921"
                     /HighExp="T0.30H, T0.0H, T1.0H, T1.30H, T-0.40H, T2.0H,
                     HiOs, T2.30H, MG 120, T-1.10H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.99, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S171"
     upshifts        514572
                     /Source="Nicolas_upshifts"
                     /id="U383"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig="0.99000999000999"
                     /xcortree=2861
                     /SigmaFactorBS="tgtcgataggagtgtttgttccttgaaaactacaTATAGACA
                     aaaaaagcgccttgACGAATGATCATCAAGAACGccggaaaataaaaactagacactt
                     t"
                     /listShort="S171, ydcP, ydcQ, ydcR, S172, ydcS, ydcT,
                     yddA, yddB, yddC, yddD, yddE, yddF, yddG, yddH, yddI,
                     yddJ"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(514605..514624)
                     /Source="Nicolas_upshift_promotors"
                     /id="U384"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig="0.987012987012987"
                     /xcortree=3113
                     /SigmaFactorBS="tttaaagtgattgctgttcatcactcaaatactcaCGCATGA
                     CatttcaacaagaaTACCGTATAATAAAAGTGTCtagtttttattttccggcgttctt
                     g"
                     /listShort="S170"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(514620)
                     /Source="Nicolas_upshifts"
                     /id="U384"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig="0.987012987012987"
                     /xcortree=3113
                     /SigmaFactorBS="tttaaagtgattgctgttcatcactcaaatactcaCGCATGA
                     CatttcaacaagaaTACCGTATAATAAAAGTGTCtagtttttattttccggcgttctt
                     g"
                     /listShort="S170"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(514638..514645)
                     /Source="Nicolas_upshift_promotors"
                     /id="U384"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig="0.987012987012987"
                     /xcortree=3113
                     /SigmaFactorBS="tttaaagtgattgctgttcatcactcaaatactcaCGCATGA
                     CatttcaacaagaaTACCGTATAATAAAAGTGTCtagtttttattttccggcgttctt
                     g"
                     /listShort="S170"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             514726..514854
                     /locus_tag="BSU_04849"
                     /old_locus_tag="BSU04849"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 22505685"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: hypothetical protein"
                     /protein_id="YP_009513947.1"
                     /translation="MMAIISLLGCHEGVKPLATDKRQDGYRTGANQKHKIEINVLL*"
     gene            514726..514854
                     /locus_tag="BSU_04849"
                     /old_locus_tag="BSU04849"
     CDS             514890..515270
                     /gene="helP"
                     /locus_tag="BSU_04850"
                     /old_locus_tag="BSU04850"
                     /experiment="publication(s) with functional evidences,
                     PMID:22505685, 23326247, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22505685, 23326247,
                     26013486; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: helicase processivity
                     factor"
                     /protein_id="NP_388366.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04850"
                     /db_xref="EnsemblGenomes-Tr:CAB12292"
                     /db_xref="InterPro:IPR010365"
                     /db_xref="SubtiList:BG12103"
                     /db_xref="UniProtKB/Swiss-Prot:P96633"
                     /translation="MNLNFIVPDINMTFGDMKFMGLNRERYVYDRENNKRTDVLESRI
                     YNIASAVQGGQIEVTIPEYAGAKEIPPFADIELKNPKISAMATSQRDSTYANVMWKLE
                     ADDIVVKGGSSVKPAAATGGNEKK*"
     gene            514890..515270
                     /gene="helP"
                     /locus_tag="BSU_04850"
                     /old_locus_tag="BSU04850"
     CDS             515306..516748
                     /gene="conQ"
                     /locus_tag="BSU_04860"
                     /old_locus_tag="BSU04860"
                     /experiment="publication(s) with functional evidences,
                     PMID:17511812, 22505685, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17511812, 22505685,
                     26013486; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: coupling conjugation
                     protein VirD4"
                     /protein_id="NP_388367.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04860"
                     /db_xref="EnsemblGenomes-Tr:CAB12293"
                     /db_xref="GOA:P96634"
                     /db_xref="InterPro:IPR002543"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12104"
                     /db_xref="UniProtKB/Swiss-Prot:P96634"
                     /translation="MSDFLNKRFWKYRGKRIRPYMRNNVKLAGAIIFVPVFLLSMFLF
                     WREQLIHFDLSQVIKNFEWNVPLIIKSVLCSVLIAVGSIVASYFLLFDSYKKILHRQK
                     IAKMIFSNKFYEKENVKVRKIFSNETDSKEKITYFPRMYYQVKNNHIYIRIAMDMSRF
                     QNRFLDLGKDLENGLFCDLVDKQMEEGFVCFKLLYDVKKNRISIDDAVAENGVLPLMK
                     HISWQFDKLPHMLIAGGTGGGKTYFMLTIIKACVGLGADVRILDPKNADLADLEEVLP
                     KKVYSQKNGILMCLRKSVDGMMERMDEMKQMSNYKTGENYAYLGLKPVFIFFDEYVAF
                     MDLLDMKERNEALSYMKQLVMLGRQAGYFLVLGAQRPDAKYLADGIRDQFSFRVSLGL
                     MSDTGYGMMFGDVEKAYVNKKETGRGYANVGTGSVLEFYSPIVPKGYDFMSSIKNALV
                     GVEGAQATAVASGSVSDQTASGEGVSEANG*"
     gene            515306..516748
                     /gene="conQ"
                     /locus_tag="BSU_04860"
                     /old_locus_tag="BSU04860"
     CDS             516741..517799
                     /gene="nicK"
                     /locus_tag="BSU_04870"
                     /old_locus_tag="BSU04870"
                     /experiment="publication(s) with functional evidences,
                     PMID:17511812, 17693500, 22505685, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17511812, 17693500,
                     22505685, 26013486; Product type h: extrachromosomal
                     origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: DNA relaxase"
                     /protein_id="NP_388368.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04870"
                     /db_xref="EnsemblGenomes-Tr:CAB12294"
                     /db_xref="GOA:P96635"
                     /db_xref="InterPro:IPR003491"
                     /db_xref="SubtiList:BG12105"
                     /db_xref="UniProtKB/Swiss-Prot:P96635"
                     /translation="MDELKQPPHANRGVVIVKEKNEAVESPLVSMVDYIRVSFKTHDV
                     DRIIEEVLHLSKDFMTEKQSGFYGYVGTYELDYIKVFYSAPDDNRGVLIEMSGQGCRQ
                     FESFLECRKKTWYDFFQDCMQQGGSFTRFDLAIDDKKTYFSIPELLKKAQKGECISRF
                     RKSDFNGSFDLSDGITGGTTIYFGSKKSEAYLCFYEKNYEQAEKYNIPLEELGDWNRY
                     ELRLKNERAQVAIDALLKTKDLTLIAMQIINNYVRFVDADENITREHWKTSLFWSDFI
                     GDVGRLPLYVKPQKDFYQKSRNWLRNSCAPTMKMVLEADEHLGKTDLSDMIAEAELAD
                     KHKKMLDVYMADVADMVV*"
     gene            516741..517799
                     /gene="nicK"
                     /locus_tag="BSU_04870"
                     /old_locus_tag="BSU04870"
     downshifts      516744
                     /Source="Nicolas_upshifts"
                     /id="D232"
                     /incds=0
                     /nref=1
                     /ntot=1
                     /MaxReadThrough="5.48512"
                     /MaxDrop="3.25403"
                     /score="-9.5933493"
                     /energy="-23.1"
                     /TU="U382,U383"
                     /idTUdmin="U382"
                     /TUdmin="-176"
                     /isTUend="FALSE"
     S_feature       517800..518063
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_535832_536095"
                     /HighExp="T0.30H, T1.0H, T1.30H, T0.0H, T2.0H, T2.30H,
                     T-0.40H, T3.0H, T3.30H, MG 120"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S172"
     CDS             518064..518333
                     /gene="ydcS"
                     /locus_tag="BSU_04880"
                     /old_locus_tag="BSU04880"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22505685; Product type h
                     :extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: conserved protein of
                     unknown function"
                     /protein_id="NP_388369.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04880"
                     /db_xref="EnsemblGenomes-Tr:CAB12295"
                     /db_xref="SubtiList:BG12106"
                     /db_xref="UniProtKB/Swiss-Prot:P96636"
                     /translation="MHNVNLLNQAGLENALESVGCLDIVEDLIEKMQEYVLYHTETAE
                     RFAIDIFTVVNNYTKKVHAIFNVLENEDGETNVKNVEFEVMHFTE*"
     gene            518064..518333
                     /gene="ydcS"
                     /locus_tag="BSU_04880"
                     /old_locus_tag="BSU04880"
     promotor_-10    complement(518124..518143)
                     /Source="Nicolas_upshift_promotors"
                     /id="U385"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.956043956043956"
                     /psig="0.998001998001998"
                     /xcortree=2065
                     /SigmaFactorBS="aatctttcggcagtttcggtatgatacaaaacataTTCCTGC
                     AtcttttctattaaaTCTTCTACAATATCTAAACAgccaactgattccaaagcatttt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(518140)
                     /Source="Nicolas_upshifts"
                     /id="U385"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.956043956043956"
                     /psig="0.998001998001998"
                     /xcortree=2065
                     /SigmaFactorBS="aatctttcggcagtttcggtatgatacaaaacataTTCCTGC
                     AtcttttctattaaaTCTTCTACAATATCTAAACAgccaactgattccaaagcatttt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(518158..518165)
                     /Source="Nicolas_upshift_promotors"
                     /id="U385"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.956043956043956"
                     /psig="0.998001998001998"
                     /xcortree=2065
                     /SigmaFactorBS="aatctttcggcagtttcggtatgatacaaaacataTTCCTGC
                     AtcttttctattaaaTCTTCTACAATATCTAAACAgccaactgattccaaagcatttt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             518372..518638
                     /gene="ydcT"
                     /locus_tag="BSU_04890"
                     /old_locus_tag="BSU04890"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22505685; Product type h
                     :extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: conserved protein of
                     unknown function"
                     /protein_id="NP_388370.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04890"
                     /db_xref="EnsemblGenomes-Tr:CAB12296"
                     /db_xref="SubtiList:BG12107"
                     /db_xref="UniProtKB/Swiss-Prot:P96637"
                     /translation="MFNINLLNQARLESDLDSLGCLDIAEELIEKMMEDVFYSDVAQR
                     IIVQTLAVINNANAKLQATFNILEDEDMETDERSVEFEGISYYE*"
     gene            518372..518638
                     /gene="ydcT"
                     /locus_tag="BSU_04890"
                     /old_locus_tag="BSU04890"
     CDS             518655..518963
                     /gene="yddA"
                     /locus_tag="BSU_04900"
                     /old_locus_tag="BSU04900"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22505685; Product type h
                     :extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: conserved protein of
                     unknown function"
                     /protein_id="NP_388371.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04900"
                     /db_xref="EnsemblGenomes-Tr:CAB12297"
                     /db_xref="SubtiList:BG12108"
                     /db_xref="UniProtKB/Swiss-Prot:P96638"
                     /translation="MSAVDKRFKSLGFNVGIPSLVFVRSLSRDCMLVVEGERVKGFAE
                     YRYTFYKTRYLPDGRMTSLKVYMENQSIKRVLHRVASFLSFLERTKQIEQKECEKVAQ
                     *"
     gene            518655..518963
                     /gene="yddA"
                     /locus_tag="BSU_04900"
                     /old_locus_tag="BSU04900"
     CDS             518953..520017
                     /gene="conB"
                     /locus_tag="BSU_04910"
                     /old_locus_tag="BSU04910"
                     /experiment="publication(s) with functional evidences,
                     PMID:22505685, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22505685, 26013486;
                     Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: subunit of the
                     conjugation machinery VirB8"
                     /protein_id="NP_388372.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04910"
                     /db_xref="EnsemblGenomes-Tr:CAB12298"
                     /db_xref="GOA:O31491"
                     /db_xref="InterPro:IPR024735"
                     /db_xref="InterPro:IPR035628"
                     /db_xref="SubtiList:BG12109"
                     /db_xref="UniProtKB/Swiss-Prot:O31491"
                     /translation="MLNKEIGSDKKEESFFRSAFQKLKRIERPEKDKQKVPRDRSKLI
                     AVTLWSCVGSLLFICLLAVLLSINTRSQLNDMKDETNKPTNDDKQKISVTAAENFLSG
                     FINEYMNVKNDQESIEKRMQSLESYMVKQEDNHFEDEERFNVDGLKGDRELKGYSLYN
                     VKEGDKNSLFQYKVTYENLYPVEKEVEKEVKDGKKKKKVKEKVKTNEKYEKQMLLNIP
                     VTNKGDSFAVSAVPYFTQIYDLKGDIAFKGKEETRDEYAGEKKESIESFLQNFFEKYA
                     SEKKEEMVYMMKKPEALEGNLLFGEVQSVKIFETKKGFEVFCAVRFKEKENDIPVNEK
                     FSLEITENSGQFYVNKLKHQ*"
     gene            518953..520017
                     /gene="conB"
                     /locus_tag="BSU_04910"
                     /old_locus_tag="BSU04910"
     misc_feature    519491..519498
                     /Source="Nicolas_upshift_promotors"
                     /id="U386"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.363636363636364"
                     /psig="0.454545454545455"
                     /xcortree=1489
                     /SigmaFactorBS="tgaaagaaggtgataaaaacagcctttttcaatataaggtca
                     catatgaaaatctatACCCTGTAgaaaaggaagttgaaaaagaagttaaagacggaaa
                     g"
                     /listShort="yddC, yddD, yddE, yddF, yddG, yddH, yddI"
                     /listLong="yddJ"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        519494
                     /Source="Nicolas_upshifts"
                     /id="U386"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.363636363636364"
                     /psig="0.454545454545455"
                     /xcortree=1489
                     /SigmaFactorBS="tgaaagaaggtgataaaaacagcctttttcaatataaggtca
                     catatgaaaatctatACCCTGTAgaaaaggaagttgaaaaagaagttaaagacggaaa
                     g"
                     /listShort="yddC, yddD, yddE, yddF, yddG, yddH, yddI"
                     /listLong="yddJ"
     downshifts      519582
                     /Source="Nicolas_upshifts"
                     /id="D233"
                     /incds=1
                     /nref=1
                     /ntot=15
                     /MaxReadThrough="6.32422"
                     /MaxDrop="3.45679"
                     /score="-2.67923628"
                     /energy="-7.8"
                     /TU="U383,U386"
                     /idTUdmin="U382"
                     /TUdmin=2662
                     /isTUend="FALSE"
     CDS             520029..520277
                     /gene="conC"
                     /locus_tag="BSU_04920"
                     /old_locus_tag="BSU04920"
                     /function="18: Unknown function"
                     /experiment="publication(s) with functional evidences,
                     PMID:22505685, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22505685, 26013486;
                     Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: subunit of the
                     conjugation machinery"
                     /protein_id="NP_388373.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04920"
                     /db_xref="EnsemblGenomes-Tr:CAB12299"
                     /db_xref="GOA:P96640"
                     /db_xref="SubtiList:BG12110"
                     /db_xref="UniProtKB/Swiss-Prot:P96640"
                     /translation="MDFMNFFILGADLPTLGGVKGWASDVVIQFITIVVMFIAAKNLM
                     KLKMGGIIFVCCIGSAVTWVIKHWSEFSGWINALMEKL*"
     gene            520029..520277
                     /gene="conC"
                     /locus_tag="BSU_04920"
                     /old_locus_tag="BSU04920"
     CDS             520290..520814
                     /gene="conD"
                     /locus_tag="BSU_04930"
                     /old_locus_tag="BSU04930"
                     /experiment="publication(s) with functional evidences,
                     PMID:22505685, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22505685, 26013486;
                     Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: subunit of the
                     conjugation machinery"
                     /protein_id="NP_388374.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04930"
                     /db_xref="EnsemblGenomes-Tr:CAB12300"
                     /db_xref="GOA:P96641"
                     /db_xref="InterPro:IPR025608"
                     /db_xref="SubtiList:BG12111"
                     /db_xref="UniProtKB/Swiss-Prot:P96641"
                     /translation="MGRLVFNYRKAMREPKKIQQLTENYSLPFAVELIPAINYFIFVG
                     LCFGFWYGVRMIFPHAFDNSYVIVIFGIPFFLTMLVTKIKPEGKNIYIYFFDFAKYYF
                     FIKLPQKKYCNDRKIDLSNEKQIEFRKLVKVVDYSNETKNAYEGNTQEFAVNKNGRRV
                     GVLPNKKQFDSYAK*"
     gene            520290..520814
                     /gene="conD"
                     /locus_tag="BSU_04930"
                     /old_locus_tag="BSU04930"
     CDS             520702..523197
                     /gene="conE"
                     /locus_tag="BSU_04940"
                     /old_locus_tag="BSU04940"
                     /experiment="publication(s) with functional evidences,
                     PMID:19734305, 19943900, 22505685, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19734305, 19943900,
                     22505685, 26013486; Product type h: extrachromosomal
                     origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: VirB4-like ATPase"
                     /protein_id="NP_388375.3"
                     /db_xref="EnsemblGenomes-Gn:BSU04940"
                     /db_xref="EnsemblGenomes-Tr:CAB12301"
                     /db_xref="GOA:P96642"
                     /db_xref="InterPro:IPR016628"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12112"
                     /db_xref="UniProtKB/Swiss-Prot:P96642"
                     /translation="MRLKTPMKAIHKNLLLTRTGDVWAYYRIKSNSIPMQNKEKVESY
                     KKKWQHLFEEITSYEDFHLMMYPSEYELEKRFKDLETDIAADAMDVARYYNEETVRLL
                     EQRLGRLTKYDFILGVKLKSSLVNISVELKDNILSFFNTATDTVVKMLGWEQNVSTSF
                     FEKYEEVEETLANIMASVRGERLSETEMTYINRYHFVRGLKHQTNEESEIKDVRSITN
                     TIIDPTDPSVLHLHSDQDEGYSAFVVIDEFLHNMSESDLFYEAQSLPFPVEVQMKIQT
                     ESKSITKPALNLKRQQLKEEQKEQQSTGDRSDVSTVTSATMIRHLQDEIKKEDVHVMN
                     WLSVIVVHGKTKKECVGKATIVKRHLKGAGITCRLPVADQLNLFYKMLPGEKLDITDK
                     NWIQKTTQDGVAESLFAVNSDIGSKIGFFLGWVDRFQEHTDLESAIMSSRDFVLFHPF
                     LANQQLKGSKTRSPHCLITGDTGNGKSYLAKLIFNYISMLNIKSLYIDPKKEMRKWIQ
                     RVLNDEYIRENFPLYIAHLEKYNYITLDHENTHNWGALDPISFLPPMKAKELVQVIFE
                     QVYDFKGKDDINTAFLRATSEVIDAKQKGEQVGSLDIIRKMQSHPEEAVQKAGDYLNE
                     VVSDSILKLCIHDGSNPALSLEKRITILEVENMDLPDHAERLENYTISQLKSSAVMFA
                     LGKFCELFGMNQDEQTVEFIDEAWIFTTSQQGKKVERQMRRIGRSYNNAEYFISQSTK
                     DALKEEDSGNFGVAFAFDEPNEREEVLKWMNMEVTKDNKKMMESMFQGQCLFKDYYGR
                     TSKISIECLFEEWQGALKTVEKKAVAYAEEKYL*"
     gene            520702..523197
                     /gene="conE"
                     /locus_tag="BSU_04940"
                     /old_locus_tag="BSU04940"
     CDS             523216..523542
                     /gene="yddF"
                     /locus_tag="BSU_04950"
                     /old_locus_tag="BSU04950"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 19943900, 22505685, 26013486;
                     Producttype h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: conserved protein of
                     unknown function"
                     /protein_id="NP_388376.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04950"
                     /db_xref="EnsemblGenomes-Tr:CAB12302"
                     /db_xref="InterPro:IPR015055"
                     /db_xref="SubtiList:BG12113"
                     /db_xref="UniProtKB/Swiss-Prot:P96643"
                     /translation="MEIAFLNSLVVTSPGFYKAEKITLDEVKQWLKHYDGRYKSFIGH
                     KSTAQFLQKLLGIRIEQNRKTFRHMKYQKAICFSLYERYPENVLLTQRDLEKARYQFY
                     LLTRLD*"
     gene            523216..523542
                     /gene="yddF"
                     /locus_tag="BSU_04950"
                     /old_locus_tag="BSU04950"
     CDS             523546..525993
                     /gene="conG"
                     /locus_tag="BSU_04960"
                     /old_locus_tag="BSU04960"
                     /experiment="publication(s) with functional evidences,
                     PMID:19943900, 22505685, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19943900, 22505685,
                     26013486; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: VirB6 subunit of the
                     conjugation machinery"
                     /protein_id="NP_388377.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04960"
                     /db_xref="EnsemblGenomes-Tr:CAB12303"
                     /db_xref="GOA:P96644"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="SubtiList:BG12114"
                     /db_xref="UniProtKB/Swiss-Prot:P96644"
                     /translation="MVVMKKKRILIVSAIVLLFLTVASAVTVFSADGDTTTQPKVEKA
                     GGVELKVKRFPISRYQANNEASDDLIKGAFVGLTNVTFSFAGNIVRVVDTGMDILYNL
                     QPIDEFANSITNVSKTVYKTLKKNFGEALFIFTCAYVVYLFCVRGSVKEAMRRSILFI
                     CVMVIGGLWMSNAGYYMKVLNALSVEAQGKLLTAGNGLVGIVQDEGNFADSSAIEKGK
                     EMEGTVAVMRNLYFDIALMKPFLIVNFDETSEKKINEEDTDKGGLNRIDKLLSYKLSE
                     DGEKDKKDYIKETEIDDYKNESMTSGNVFNQLGESFIAVVASIVIGIPFLALAFFNFL
                     LQVVALVIVFFVPFAFILAYVPQLAYSGFVTLGRLGSVYLLKAMLGVIVLFVYVTCFI
                     VDKLIPPNGFGMYLLNVAVLASILWIGFHKRDAIIKFVTAGKVVSVDNNMMENMRQNI
                     VQPAWEQAKKIGGVWGNGGGVFTDFTKHFGGRKDGSNADGVTGAPSGGGNSPSGTAMG
                     YDNTHAISRTPQKETANGIANHNSRSLKRNPQTLSKEQEKQKQKEAFANAKENKQQSH
                     LARLRKDGINSPMLKDALNEGNEDLSKRAPILQDKKDESARTDQKEYVEQLLKQPNNQ
                     QQTDDASLQHEEESTSNRAPVLQENEKDTERTDQKAYIYDEQNQNLETDQQQDFEVQK
                     DDSVSNSEPVAQEKTAEIKRSDQKVMMNQPEPQLGFESPQSTKVENQPIANNERKIRP
                     SEPAKVHSDGIRVDEKQAVAPAENKTVSREKQPSSQTIKRTEQSVNSFDQVSLNEIAR
                     RSSSKVEDRLRRDERTR*"
     gene            523546..525993
                     /gene="conG"
                     /locus_tag="BSU_04960"
                     /old_locus_tag="BSU04960"
     CDS             525990..526979
                     /gene="cwlT"
                     /locus_tag="BSU_04970"
                     /old_locus_tag="BSU04970"
                     /experiment="publication(s) with functional evidences,
                     PMID:18305117, 22505685, 24532767, 26013486"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 18305117, 22505685,
                     24532767, 26013486; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: two-domain autolysin
                     withN-acetylmuramidase and DL-endopeptidase activity
                     VirB1"
                     /protein_id="NP_388378.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04970"
                     /db_xref="EnsemblGenomes-Tr:CAB12304"
                     /db_xref="GOA:P96645"
                     /db_xref="InterPro:IPR000064"
                     /db_xref="InterPro:IPR023346"
                     /db_xref="SubtiList:BG12115"
                     /db_xref="UniProtKB/Swiss-Prot:P96645"
                     /translation="MISKKVVLPLVFSAPFIFFFVLCIVVVMTISRENQVGDDFIGGG
                     DGEYETVGIAPEVERFRAVFEKYARQEGVFDQVNIIMALTMQESGGRSLDIMQSSESI
                     GLPPNSITDPERSIEVGIKHFKKVFKQAGGDVRLTLQAYNFGSGFIDYVKKNGGKYTK
                     KLALDFSRLQAFKMGWKSYGDPSYVDHVMRYVKGSDKNVKPVKGSMDFYETVMKEALK
                     YEGQPYAWGGSNPETGFDCSGLVQWSFAKAGITLPRTAQEQHGATKKISEKEATAGDL
                     VFFGGTYEGKAITHVGIYVGNGRMFNSNDSGIQYSDLKSGYWRDHLVSFGRIK*"
     gene            525990..526979
                     /gene="cwlT"
                     /locus_tag="BSU_04970"
                     /old_locus_tag="BSU04970"
     CDS             526994..527500
                     /gene="yddI"
                     /locus_tag="BSU_04980"
                     /old_locus_tag="BSU04980"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22505685; Product type h
                     :extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: conserved protein of
                     unknown function"
                     /protein_id="NP_388379.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04980"
                     /db_xref="EnsemblGenomes-Tr:CAB12305"
                     /db_xref="GOA:P96646"
                     /db_xref="SubtiList:BG12116"
                     /db_xref="UniProtKB/Swiss-Prot:P96646"
                     /translation="MKTHIAWASACLLLVMLTGFFTIGQQTYKIEKLKDKNEVLSEKI
                     KELNHIESTSSASENKAFFEAFFNYSDIDIRYETVKKHTTGKGFDYAFPSRSDQKHTV
                     SVQSELLSLESYSKPLDESHELFLNIVEVATTANSVTTNQVLIVQTTMKKEKDGWLVD
                     NVQVKGNG*"
     gene            526994..527500
                     /gene="yddI"
                     /locus_tag="BSU_04980"
                     /old_locus_tag="BSU04980"
     promotor_-35    527503..527509
                     /Source="Nicolas_upshift_promotors"
                     /id="U387"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.464535464535465"
                     /psig="0.997002997002997"
                     /xcortree=555
                     /SigmaFactorBS="ataatgtgcaggttaagggaaatggataaaaGGTGGAAaaga
                     tcaatttgtTTGTTTATACTAAATATTGAaaaaggaggtaatgtttattttgaaaaac
                     c"
                     /listShort="yddJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    527523..527542
                     /Source="Nicolas_upshift_promotors"
                     /id="U387"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.464535464535465"
                     /psig="0.997002997002997"
                     /xcortree=555
                     /SigmaFactorBS="ataatgtgcaggttaagggaaatggataaaaGGTGGAAaaga
                     tcaatttgtTTGTTTATACTAAATATTGAaaaaggaggtaatgtttattttgaaaaac
                     c"
                     /listShort="yddJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        527532
                     /Source="Nicolas_upshifts"
                     /id="U387"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.464535464535465"
                     /psig="0.997002997002997"
                     /xcortree=555
                     /SigmaFactorBS="ataatgtgcaggttaagggaaatggataaaaGGTGGAAaaga
                     tcaatttgtTTGTTTATACTAAATATTGAaaaaggaggtaatgtttattttgaaaaac
                     c"
                     /listShort="yddJ"
                     /GFF_Attribute="listLong"
     CDS             527563..527943
                     /gene="yddJ"
                     /locus_tag="BSU_04990"
                     /old_locus_tag="BSU04990"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: putative lipoprotein of
                     unknown function"
                     /protein_id="NP_388380.1"
                     /db_xref="EnsemblGenomes-Gn:BSU04990"
                     /db_xref="EnsemblGenomes-Tr:CAB12306"
                     /db_xref="InterPro:IPR028075"
                     /db_xref="SubtiList:BG12117"
                     /db_xref="UniProtKB/Swiss-Prot:P96647"
                     /translation="MKNLFIFLSLMMMFVLTACGGSKYDDAIDDVISQYKEHKGNDTE
                     INIKRENAIVRVYEGGKYIQFAFYMPDNSSRELTTFKYYEKFGDKYEKMTDMPGNGEN
                     DRLGLSKKTPDYEEVKGEETELEE*"
     gene            527563..527943
                     /gene="yddJ"
                     /locus_tag="BSU_04990"
                     /old_locus_tag="BSU04990"
     downshifts      527920
                     /Source="Nicolas_upshifts"
                     /id="D234"
                     /incds=0
                     /nref=167
                     /ntot=245
                     /MaxReadThrough="2.07932"
                     /MaxDrop="5.51482"
                     /score="8.08816145"
                     /energy="-14.7"
                     /TU="NA"
                     /idTUdmin="U383"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(527996)
                     /Source="Nicolas_upshifts"
                     /id="D235"
                     /incds=0
                     /nref=51
                     /ntot=228
                     /MaxReadThrough="3.21157"
                     /MaxDrop="4.80215"
                     /score="-2.66780619"
                     /energy="-18.7"
                     /TU="U388"
                     /idTUdmin="U388"
                     /TUdmin="-110"
                     /isTUend="FALSE"
     S_feature       complement(528019..528133)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_546051_546165_c"
                     /HighExp="LPhT, Lbtran, Mt0, HiTm, Lbexp, M40t45, M0t45,
                     HPh, dia0, Mal"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S173"
     downshifts      complement(528062)
                     /Source="Nicolas_upshifts"
                     /id="D236"
                     /incds=0
                     /nref=1
                     /ntot=2
                     /MaxReadThrough="5.69722"
                     /MaxDrop="4.64006"
                     /score="-2.66780619"
                     /energy="-18.7"
                     /TU="U388"
                     /idTUdmin="U388"
                     /TUdmin="-176"
                     /isTUend="FALSE"
     CDS             complement(528134..528934)
                     /gene="yddK"
                     /locus_tag="BSU_05000"
                     /old_locus_tag="BSU05000"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22505685; Product type h
                     :extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: conserved protein of
                     unknown function"
                     /protein_id="NP_388381.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05000"
                     /db_xref="EnsemblGenomes-Tr:CAB12307"
                     /db_xref="GOA:P96648"
                     /db_xref="InterPro:IPR000157"
                     /db_xref="InterPro:IPR035897"
                     /db_xref="SubtiList:BG12118"
                     /db_xref="UniProtKB/Swiss-Prot:P96648"
                     /translation="MDTLKKLKFEANGIIGVLLDYSREPVLTNIIDQFRTSLESNDIE
                     LIRYSLEQLKTWYARNRNEIYKNEFVFNEFEHHETENKIKKFLDELPVVDETEKSSIT
                     HFSSDQNRELEKKIFISHSSKDKIVCNAFVELLEDIGVSSEDIIYTSSPYHGIPGDED
                     IFEYLKKHLFKGAYVFYMLSDNYYDSVYCLNEMGATWVNSNNCSTFILPGFKGEIKGV
                     IDKNKKAFSLEEPIDLFNLKEKILRMYDLTLEDKKWERIKAKFNTKLK*"
     gene            complement(528134..528934)
                     /gene="yddK"
                     /locus_tag="BSU_05000"
                     /old_locus_tag="BSU05000"
     promotor_-10    complement(528979..528998)
                     /Source="Nicolas_upshift_promotors"
                     /id="U388"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.762237762237762"
                     /psig=1
                     /xcortree=2317
                     /SigmaFactorBS="tttatgaattacccaaacaatccagactgctttaaaataaGT
                     AGttagaataggagtctATGTTATATAATTAGATATGaaatgtttacaaacaatggat
                     t"
                     /listShort="yddK, S173"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(528997)
                     /Source="Nicolas_upshifts"
                     /id="U388"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.762237762237762"
                     /psig=1
                     /xcortree=2317
                     /SigmaFactorBS="tttatgaattacccaaacaatccagactgctttaaaataaGT
                     AGttagaataggagtctATGTTATATAATTAGATATGaaatgtttacaaacaatggat
                     t"
                     /listShort="yddK, S173"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(529014..529017)
                     /Source="Nicolas_upshift_promotors"
                     /id="U388"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.762237762237762"
                     /psig=1
                     /xcortree=2317
                     /SigmaFactorBS="tttatgaattacccaaacaatccagactgctttaaaataaGT
                     AGttagaataggagtctATGTTATATAATTAGATATGaaatgtttacaaacaatggat
                     t"
                     /listShort="yddK, S173"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             529274..530449
                     /gene="rapI"
                     /locus_tag="BSU_05010"
                     /old_locus_tag="BSU05010"
                     /EC_number="3.1.-.-"
                     /experiment="publication(s) with functional evidences,
                     PMID:16105942, 22505685, 23526881"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16105942, 22505685,
                     23526881; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: response regulator
                     aspartate phosphatase"
                     /protein_id="NP_388382.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05010"
                     /db_xref="EnsemblGenomes-Tr:CAB12308"
                     /db_xref="GOA:P96649"
                     /db_xref="InterPro:IPR011990"
                     /db_xref="InterPro:IPR013026"
                     /db_xref="InterPro:IPR019734"
                     /db_xref="PDB:4I1A"
                     /db_xref="SubtiList:BG12119"
                     /db_xref="UniProtKB/Swiss-Prot:P96649"
                     /translation="MRGVFLDKDKIPYDLVTKKLNEWYTSIKNDQVEQAEIIKTEVEK
                     ELLNMEENQDALLYYQLLEFRHEIMLSYMKSKEIEDLNNAYETIKEIEKQGQLTGMLE
                     YYFYFFKGMYEFRRKELISAISAYRIAESKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
                     FSMNYANRALKIFREYEEYAVQTVRCQFIVAGNLIDSLEYERALEQFLKSLEISKESN
                     IEHLIAMSHMNIGICYDELKEYKKASQHLILALEIFEKSKHSFLTKTLFTLTYVEAKQ
                     QNYNVALIYFRKGRFIADKSDDKEYSAKFKILEGLFFSDGETQLIKNAFSYLASRKMF
                     ADVENFSIEVADYFHEQGNLMLSNEYYRMSIEARRKIKKGEIIDENQPDSIGSSDFK*
                     "
     gene            529274..530449
                     /gene="rapI"
                     /locus_tag="BSU_05010"
                     /old_locus_tag="BSU05010"
     promotor_-35    530129..530136
                     /Source="Nicolas_upshift_promotors"
                     /id="U389"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=2790
                     /SigmaFactorBS="aacaaaattataatgttgctttgatatacTTTAGGAAagggc
                     gatttattGCCGATAAAAGTGATGATAaggaatactcagcgaaattcaaaatattaga
                     g"
                     /listShort="phrI, yddM, S174"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    530150..530168
                     /Source="Nicolas_upshift_promotors"
                     /id="U389"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=2790
                     /SigmaFactorBS="aacaaaattataatgttgctttgatatacTTTAGGAAagggc
                     gatttattGCCGATAAAAGTGATGATAaggaatactcagcgaaattcaaaatattaga
                     g"
                     /listShort="phrI, yddM, S174"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        530160
                     /Source="Nicolas_upshifts"
                     /id="U389"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=2790
                     /SigmaFactorBS="aacaaaattataatgttgctttgatatacTTTAGGAAagggc
                     gatttattGCCGATAAAAGTGATGATAaggaatactcagcgaaattcaaaatattaga
                     g"
                     /listShort="phrI, yddM, S174"
                     /GFF_Attribute="listLong"
     promotor_-35    530357..530363
                     /Source="Nicolas_upshift_promotors"
                     /id="U390"
                     /multdbtbs="SigH"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.902097902097902"
                     /psig="0.902097902097902"
                     /xcortree=882
                     /SigmaFactorBS="agtcgctgattattttcatgaacaaggaaatttaatgctctc
                     taatgaatattatCGTATGAgtattgaagcaagaCGAAAAATTAAAaaaggggagatt
                     a"
                     /listShort="phrI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        530362
                     /Source="Nicolas_upshifts"
                     /id="U390"
                     /multdbtbs="SigH"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.902097902097902"
                     /psig="0.902097902097902"
                     /xcortree=882
                     /SigmaFactorBS="agtcgctgattattttcatgaacaaggaaatttaatgctctc
                     taatgaatattatCGTATGAgtattgaagcaagaCGAAAAATTAAAaaaggggagatt
                     a"
                     /listShort="phrI"
                     /GFF_Attribute="listLong"
     promotor_-10    530378..530389
                     /Source="Nicolas_upshift_promotors"
                     /id="U390"
                     /multdbtbs="SigH"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.902097902097902"
                     /psig="0.902097902097902"
                     /xcortree=882
                     /SigmaFactorBS="agtcgctgattattttcatgaacaaggaaatttaatgctctc
                     taatgaatattatCGTATGAgtattgaagcaagaCGAAAAATTAAAaaaggggagatt
                     a"
                     /listShort="phrI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             530406..530525
                     /gene="phrI"
                     /locus_tag="BSU_05020"
                     /old_locus_tag="BSU05020"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16816200, 21908671, 22505685"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16816200, 21908671,
                     22505685; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: secreted regulator of
                     theactivity of phosphatase RapI"
                     /protein_id="NP_388383.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05020"
                     /db_xref="EnsemblGenomes-Tr:CAB12309"
                     /db_xref="SubtiList:BG12645"
                     /db_xref="UniProtKB/Swiss-Prot:O31492"
                     /translation="MKISRILLAAVILSSVFSITYLQSDHNTEIKVAADRVGA*"
     gene            530406..530525
                     /gene="phrI"
                     /locus_tag="BSU_05020"
                     /old_locus_tag="BSU05020"
     downshifts      530523
                     /Source="Nicolas_upshifts"
                     /id="D237"
                     /incds=0
                     /nref=46
                     /ntot=227
                     /MaxReadThrough="4.14733"
                     /MaxDrop="5.8523"
                     /score="15.7846721"
                     /energy="-10.4"
                     /TU="U389"
                     /idTUdmin="U390"
                     /TUdmin="-15"
                     /isTUend="TRUE"
     CDS             530678..531619
                     /gene="yddM"
                     /locus_tag="BSU_05030"
                     /old_locus_tag="BSU05030"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22505685; Product type
                     h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="ICEBs1 mobile element: putative helicase"
                     /protein_id="NP_388384.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05030"
                     /db_xref="EnsemblGenomes-Tr:CAB12310"
                     /db_xref="GOA:P96650"
                     /db_xref="SubtiList:BG12120"
                     /db_xref="UniProtKB/Swiss-Prot:P96650"
                     /translation="MGENMFKKEKVTEYIWTILIPTIITFIISWVGSYYNGTSTVSIG
                     QPTKVSGQYITPINISPYHDIKELRITFPQKLDVKQISSNEPINVKSDKNNIGVESNS
                     TFEIAKIVENNSVQLLITTQKKLNDKEIRIDKNGNNISVNYESQIVNPAKKQLINLII
                     TSSIYFIMLNILALIMNKRWDKYYAKMKNEIKEFEDNAKDLDKKSKKKSEELSELRKT
                     LNQAFEETDRIKYHEKKKQILLLAKLNDYKKELTFWRNTIRKVLYELPDGDKKADKLI
                     GTVTSSLKTYGTVEKNEHDYESLKVAAALLNDSDKRS*"
     gene            530678..531619
                     /gene="yddM"
                     /locus_tag="BSU_05030"
                     /old_locus_tag="BSU05030"
     S_feature       531620..531878
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_549652_549910"
                     /HighExp="HPh, S1, Gly, LoTm, LPh, MG 120, GM-0.1, aero,
                     S2, M9-exp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.80510899999999996"
                     /TUshortSig="SigD"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S174"
     S_feature       complement(531891..532207)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_549923_550239_c"
                     /HighExp="Diami, dia15, dia5, HPh, Etha, H2O2, Cold, LPh,
                     C90, Paraq"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S175"
     downshifts      531920
                     /Source="Nicolas_upshifts"
                     /id="D238"
                     /incds=0
                     /nref=3
                     /ntot=115
                     /MaxReadThrough="0.144629999999999"
                     /MaxDrop="3.58923"
                     /score="4.45688042"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U389"
                     /TUdmin=84
                     /isTUend="FALSE"
     downshifts      complement(531952)
                     /Source="Nicolas_upshifts"
                     /id="D239"
                     /incds=0
                     /nref=3
                     /ntot=21
                     /MaxReadThrough="2.31925"
                     /MaxDrop="3.67068"
                     /score="-2.66780619"
                     /energy="-18.7"
                     /TU="NA"
                     /idTUdmin="U391"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(532208..533227)
                     /gene="yddN"
                     /locus_tag="BSU_05040"
                     /old_locus_tag="BSU05040"
                     /EC_number="1.14.14.-"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9836433; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative alkanal monooxygenase"
                     /protein_id="NP_388385.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05040"
                     /db_xref="EnsemblGenomes-Tr:CAB12311"
                     /db_xref="GOA:P96651"
                     /db_xref="InterPro:IPR011251"
                     /db_xref="InterPro:IPR019949"
                     /db_xref="InterPro:IPR036661"
                     /db_xref="SubtiList:BG12121"
                     /db_xref="UniProtKB/Swiss-Prot:P96651"
                     /translation="MKKFDISVLSVAPLRQGETMKQGIDSAVSLAKAVDNMGYKRIWF
                     AEHHNHDAYASAATVSIVQHILANTKDIRVGSGGIMLPNHSPLIVAEQFGTLETLYPN
                     RVDLALGRAPGTDQKTADVIRRSNHNGVFFFEREVNDILRFVGDKSVQGEVRAYPGIG
                     THVPVFVLGSSTDSAEIAAKLGLPYAFGAQFSPHSMEEALSIYRENFQPSSYLQEPYV
                     IACINVIAAESIDEASFISASHLQVYIDIYTNNLSKLIPPTENFLESLSQFELEILHS
                     RLGYTIMGDRETIRRELIDFQQMYHADELIVLSNIYELSKEIQSYEILKQVVDELFKK
                     RMEQL*"
     gene            complement(532208..533227)
                     /gene="yddN"
                     /locus_tag="BSU_05040"
                     /old_locus_tag="BSU05040"
     promotor_-10    complement(532903..532922)
                     /Source="Nicolas_upshift_promotors"
                     /id="U391"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig="0.999000999001"
                     /xcortree=1980
                     /SigmaFactorBS="ttccccattaatcgtagcggagcaatttggaaCACTTGAAac
                     attatatccaaaTCGTGTAGATTTGGCATTAGgacgcgcacccggaacggatcaaaaa
                     a"
                     /listShort="S175"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(532916)
                     /Source="Nicolas_upshifts"
                     /id="U391"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig="0.999000999001"
                     /xcortree=1980
                     /SigmaFactorBS="ttccccattaatcgtagcggagcaatttggaaCACTTGAAac
                     attatatccaaaTCGTGTAGATTTGGCATTAGgacgcgcacccggaacggatcaaaaa
                     a"
                     /listShort="S175"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(532937..532944)
                     /Source="Nicolas_upshift_promotors"
                     /id="U391"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig="0.999000999001"
                     /xcortree=1980
                     /SigmaFactorBS="ttccccattaatcgtagcggagcaatttggaaCACTTGAAac
                     attatatccaaaTCGTGTAGATTTGGCATTAGgacgcgcacccggaacggatcaaaaa
                     a"
                     /listShort="S175"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    533016..533020
                     /Source="Nicolas_upshift_promotors"
                     /id="U392"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig=1
                     /xcortree=2543
                     /SigmaFactorBS="ttggcaacataataccccctgaacctacgcgaatgTCTTTtg
                     tatttgctaatataTGTTGTACAATTGATACGGTtgctgcacttgcataagcgtcgtg
                     a"
                     /listShort="S176, lrpA, S177"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    533037..533056
                     /Source="Nicolas_upshift_promotors"
                     /id="U392"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig=1
                     /xcortree=2543
                     /SigmaFactorBS="ttggcaacataataccccctgaacctacgcgaatgTCTTTtg
                     tatttgctaatataTGTTGTACAATTGATACGGTtgctgcacttgcataagcgtcgtg
                     a"
                     /listShort="S176, lrpA, S177"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        533041
                     /Source="Nicolas_upshifts"
                     /id="U392"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig=1
                     /xcortree=2543
                     /SigmaFactorBS="ttggcaacataataccccctgaacctacgcgaatgTCTTTtg
                     tatttgctaatataTGTTGTACAATTGATACGGTtgctgcacttgcataagcgtcgtg
                     a"
                     /listShort="S176, lrpA, S177"
                     /GFF_Attribute="listLong"
     S_feature       533042..533486
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_551074_551518"
                     /HighExp="dia15, dia5, H2O2, G180, G135, Paraq, HPh,
                     LBGexp, Lbexp, G150"
                     /AntisenseName="yddN"
                     /AntisenseCor="0.70327972625798696"
                     /AntisenseRegPval="-40.700000000000003"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S176"
     CDS             533487..533897
                     /gene="lrpA"
                     /locus_tag="BSU_05050"
                     /old_locus_tag="BSU05050"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11902725, 12675791, 17223133"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11902725, 12675791,
                     17223133; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (Lrp/AsnC family)"
                     /protein_id="NP_388386.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05050"
                     /db_xref="EnsemblGenomes-Tr:CAB12312"
                     /db_xref="GOA:P96652"
                     /db_xref="InterPro:IPR000485"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR019887"
                     /db_xref="InterPro:IPR019888"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12122"
                     /db_xref="UniProtKB/Swiss-Prot:P96652"
                     /translation="MIDEIDKKILDELSKNSRLTMKKLGEKVHLTAPATASRVVKLID
                     NGIIKGCSIEVNQVKLGFSIHAFLNIYIEKIHHQPYLAFIETQDNYVINNYKVSGDGC
                     YLLECKFPSNEVLDQFLNDLNKHANYKVSIVIGK*"
     gene            533487..533897
                     /gene="lrpA"
                     /locus_tag="BSU_05050"
                     /old_locus_tag="BSU05050"
     S_feature       533898..533967
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_551930_551999"
                     /HighExp="dia15, dia5, H2O2, HPh, G180, G135, LBGtran,
                     Paraq, dia0, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S177"
     downshifts      533924
                     /Source="Nicolas_upshifts"
                     /id="D240"
                     /incds=0
                     /nref=45
                     /ntot=194
                     /MaxReadThrough="2.99689"
                     /MaxDrop="3.6808"
                     /score="-1.98969146"
                     /energy="-15.7"
                     /TU="U392"
                     /idTUdmin="U392"
                     /TUdmin="-350"
                     /isTUend="FALSE"
     CDS             complement(534020..534469)
                     /gene="lrpB"
                     /locus_tag="BSU_05060"
                     /old_locus_tag="BSU05060"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11902725, 12675791, 17223133"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11902725, 12675791,
                     17223133; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (Lrp/AsnC family)"
                     /protein_id="NP_388387.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05060"
                     /db_xref="EnsemblGenomes-Tr:CAB12313"
                     /db_xref="GOA:P96653"
                     /db_xref="InterPro:IPR000485"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR019887"
                     /db_xref="InterPro:IPR019888"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12123"
                     /db_xref="UniProtKB/Swiss-Prot:P96653"
                     /translation="MQIDSIDFQILQLLNKNARIQWKEIGEKIHMTGQAVGNRIKKME
                     DNGIIKAYSIVVDELKMGFSFTAFVFFFMNAYMHDDLLKFIATRNEISEAHRVSGDAC
                     YLLKVTVHSQEVLNHLLNDLLKYGNYQLYLSIKEVKKHYNTSLMSDE*"
     gene            complement(534020..534469)
                     /gene="lrpB"
                     /locus_tag="BSU_05060"
                     /old_locus_tag="BSU05060"
     CDS             534584..535126
                     /gene="yddQ"
                     /locus_tag="BSU_05070"
                     /old_locus_tag="BSU05070"
                     /EC_number="3.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388388.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05070"
                     /db_xref="EnsemblGenomes-Tr:CAB12314"
                     /db_xref="GOA:P96654"
                     /db_xref="InterPro:IPR000868"
                     /db_xref="InterPro:IPR036380"
                     /db_xref="SubtiList:BG12124"
                     /db_xref="UniProtKB/Swiss-Prot:P96654"
                     /translation="MTTALLVIDIQNDYFPNGKMALTNPEKAAQNAAKLLSHFRNTGA
                     PVFHVQHITEGNIAHFFHPNTEGVEIHESVRPLEKETVIVKHMPNSFFNTDLNGKLQE
                     EGVKELVVCGMMSHMCIDATVRSAVEHGYVCQVVEDACATTTLQIEDKIVPAEHVHYA
                     FMAALNGVYATVKTTEAFLK*"
     gene            534584..535126
                     /gene="yddQ"
                     /locus_tag="BSU_05070"
                     /old_locus_tag="BSU05070"
     promotor_-35    535599..535603
                     /Source="Nicolas_upshift_promotors"
                     /id="U393"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig="0.998001998001998"
                     /xcortree=2688
                     /SigmaFactorBS="agtcaaagagttaaaacacttttttttatcTATGTattcgaa
                     cactgctgaTATTATACACTTAACTCTGTcgatctaagacaaataaaaaaagaaagtg
                     a"
                     /listShort="yddR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    535620..535639
                     /Source="Nicolas_upshift_promotors"
                     /id="U393"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig="0.998001998001998"
                     /xcortree=2688
                     /SigmaFactorBS="agtcaaagagttaaaacacttttttttatcTATGTattcgaa
                     cactgctgaTATTATACACTTAACTCTGTcgatctaagacaaataaaaaaagaaagtg
                     a"
                     /listShort="yddR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        535629
                     /Source="Nicolas_upshifts"
                     /id="U393"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig="0.998001998001998"
                     /xcortree=2688
                     /SigmaFactorBS="agtcaaagagttaaaacacttttttttatcTATGTattcgaa
                     cactgctgaTATTATACACTTAACTCTGTcgatctaagacaaataaaaaaagaaagtg
                     a"
                     /listShort="yddR"
                     /GFF_Attribute="listLong"
     CDS             535679..536443
                     /gene="yddR"
                     /locus_tag="BSU_05080"
                     /old_locus_tag="BSU05080"
                     /EC_number="3.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-dependent hydrolase"
                     /protein_id="NP_388389.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05080"
                     /db_xref="EnsemblGenomes-Tr:CAB12315"
                     /db_xref="GOA:P96655"
                     /db_xref="InterPro:IPR001279"
                     /db_xref="InterPro:IPR036866"
                     /db_xref="SubtiList:BG12125"
                     /db_xref="UniProtKB/Swiss-Prot:P96655"
                     /translation="MNITQIRNATIVVKYANKKFLIDPMLAEKGTYATFPETIRQDLF
                     NPLVSLPTSIDNILDGVDAVIVTHLHLDHFDDVAKNVLPKNIKMFVQNEADAKEVKAS
                     GFKNVEVLHQDTVFEGIQLVKTKGEHGRGEELLNLMGDVCGLVFKHPSEKVLYVAGDT
                     VWYDAIEDEIHTHQPEIIVVNGGDNQRLDLGSLIMGKEDIYEVHKAAPHAKIISVHME
                     AVNHWTLSREELKNFSKEKGFSSNILVPEDGESYTF*"
     gene            535679..536443
                     /gene="yddR"
                     /locus_tag="BSU_05080"
                     /old_locus_tag="BSU05080"
     CDS             536637..537947
                     /gene="yddS"
                     /locus_tag="BSU_05090"
                     /old_locus_tag="BSU05090"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388390.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05090"
                     /db_xref="EnsemblGenomes-Tr:CAB12316"
                     /db_xref="GOA:P96656"
                     /db_xref="InterPro:IPR005828"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12126"
                     /db_xref="UniProtKB/Swiss-Prot:P96656"
                     /translation="MVMTKKDTNISTQQPLWLQGYIDSPEKQNQLYKKTLKILIFSQI
                     FGGAGLGAGITVGALLAQDMIGSENVAGIPTALFTFGSAVAALLIGASSQRFGRRAGL
                     AGGFLIGGLGAIGVIIAALINSVALLFVSLLIYGAGMASNLQVRYAGTDLANEKQRAT
                     AASMALVSTTLGAVVGPNLVNTMGEFADSIGVPNLAGPFIMSGAAFIIAGIILLIFLR
                     PDPLFVSTAIANAEKKDDKVQIGGSLKNPAIDKKGIMVGAVIMILAQLIMTAIMTMTP
                     VHMGHHGHGLSEVGLVIGLHIAAMYLPSPLTGLLVDKFGRTTMAIASGATLLAAGLVA
                     AIAPADSLSLLILALVLLGVGWNFGLLTGTALIIDSTHPSLRAKTQGTFDVLLALSGA
                     AGGALSGMVVAHSSYTILSISGAVLSLLLIPVVIWYFRRIQEKA*"
     gene            536637..537947
                     /gene="yddS"
                     /locus_tag="BSU_05090"
                     /old_locus_tag="BSU05090"
     S_feature       537970..538529
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_556002_556561"
                     /HighExp="S8, C30, Cold, BMM, C90, GM 25, MG 15, M/G, LPh,
                     S7"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S178"
     CDS             538530..538706
                     /gene="ydzM"
                     /locus_tag="BSU_05099"
                     /old_locus_tag="BSU05099"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage protein of unknown function"
                     /protein_id="YP_003097682.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05099"
                     /db_xref="EnsemblGenomes-Tr:CAX52553"
                     /db_xref="GOA:Q9K3A9"
                     /db_xref="UniProtKB/Swiss-Prot:Q9K3A9"
                     /translation="MNNKKNIFDIVMYIIFGVLSLFLVAKTDYGTGVLVFVAILYLAV
                     IAYKIKQVFSNSDS*"
     gene            538530..538706
                     /gene="ydzM"
                     /locus_tag="BSU_05099"
                     /old_locus_tag="BSU05099"
     CDS             538731..539417
                     /gene="yddT"
                     /locus_tag="BSU_05100"
                     /old_locus_tag="BSU05100"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type h : extrachromosomal
                     origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported phage protein"
                     /protein_id="NP_388391.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05100"
                     /db_xref="EnsemblGenomes-Tr:CAB12317"
                     /db_xref="SubtiList:BG12127"
                     /db_xref="UniProtKB/Swiss-Prot:P96657"
                     /translation="MRKKRVITCVMAASLTLGSLLPAGYASAKEDSKTTPSYEELALH
                     YKMKSEKISSNGKLVEIEYVSGNETHKVQMNGNNHTVKVDGIEQKGLNFEYDENVAKR
                     TNYENNNLKSNEFTTQAAKPKKGYHYVGTLSGHTKAAKNALSVTMSLVGIVPGLGWGS
                     KAATILFSYWAKEQIPDAYYKYDLYEKGAMTDSWYQYATVQFFEDKAHKKKMGKPWTS
                     TPAKVDLPNS*"
     gene            538731..539417
                     /gene="yddT"
                     /locus_tag="BSU_05100"
                     /old_locus_tag="BSU05100"
     promotor_-35    539759..539763
                     /Source="Nicolas_upshift_promotors"
                     /id="U394"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.999000999001"
                     /xcortree=2778
                     /SigmaFactorBS="gaaaggtttaagattagatattgaaaaattttaTATATtttc
                     aataaaatacTGGTACTATAATAAATGTATacagattgtatggagatgtaattaatta
                     a"
                     /listShort="ydzN, ydeA"
                     /listLong="S179, cspC"
                     /label="promotor_-35"
     promotor_-10    539778..539797
                     /Source="Nicolas_upshift_promotors"
                     /id="U394"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.999000999001"
                     /xcortree=2778
                     /SigmaFactorBS="gaaaggtttaagattagatattgaaaaattttaTATATtttc
                     aataaaatacTGGTACTATAATAAATGTATacagattgtatggagatgtaattaatta
                     a"
                     /listShort="ydzN, ydeA"
                     /listLong="S179, cspC"
                     /label="promotor_-10"
     upshifts        539786
                     /Source="Nicolas_upshifts"
                     /id="U394"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.999000999001"
                     /xcortree=2778
                     /SigmaFactorBS="gaaaggtttaagattagatattgaaaaattttaTATATtttc
                     aataaaatacTGGTACTATAATAAATGTATacagattgtatggagatgtaattaatta
                     a"
                     /listShort="ydzN, ydeA"
                     /listLong="S179, cspC"
     CDS             539841..540026
                     /gene="ydzN"
                     /locus_tag="BSU_05109"
                     /old_locus_tag="BSU05109"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097683.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05109"
                     /db_xref="EnsemblGenomes-Tr:CAX52554"
                     /db_xref="GOA:C0H3V7"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V7"
                     /translation="MRWSKWFNVFCIVALGSIYGYKLFTNQEVSTTRLIIASVIVLWN
                     IVGLFSKESVKQAQQAN*"
     gene            539841..540026
                     /gene="ydzN"
                     /locus_tag="BSU_05109"
                     /old_locus_tag="BSU05109"
     downshifts      540025
                     /Source="Nicolas_upshifts"
                     /id="D241"
                     /incds=0
                     /nref=9
                     /ntot=125
                     /MaxReadThrough="3.39785"
                     /MaxDrop="3.7067"
                     /score="-6.31330934"
                     /energy="-12.8"
                     /TU="U394"
                     /idTUdmin="U394"
                     /TUdmin="-1068"
                     /isTUend="FALSE"
     CDS             540376..540969
                     /gene="sufLC"
                     /locus_tag="BSU_05110"
                     /old_locus_tag="BSU05110"
                     /experiment="publication(s) with functional evidences,
                     PMID:24330391"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 24330391; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase III homolog, deglycase"
                     /protein_id="NP_388392.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05110"
                     /db_xref="EnsemblGenomes-Tr:CAB12318"
                     /db_xref="GOA:P96658"
                     /db_xref="InterPro:IPR002818"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="PDB:3F5D"
                     /db_xref="SubtiList:BG12128"
                     /db_xref="UniProtKB/Swiss-Prot:P96658"
                     /translation="MKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSI
                     GGFKTSVDYIIGLEPANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVD
                     FLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTAPIEFTNL
                     ILEMIDFDTPENIEKMMYMNRYGFYHFCDKYGNPFVD*"
     gene            540376..540969
                     /gene="sufLC"
                     /locus_tag="BSU_05110"
                     /old_locus_tag="BSU05110"
     promotor_-35    541082..541089
                     /Source="Nicolas_upshift_promotors"
                     /id="U395"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.561438561438561"
                     /psig=1
                     /xcortree=3090
                     /SigmaFactorBS="aagtttaacaaataatgccatcaatattAATTTGCAgttatt
                     tccgattCCTGATATAATAAAGAAGAAttatttttgttcggtgtaaaggatagtatga
                     a"
                     /listShort="S179, cspC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    541103..541122
                     /Source="Nicolas_upshift_promotors"
                     /id="U395"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.561438561438561"
                     /psig=1
                     /xcortree=3090
                     /SigmaFactorBS="aagtttaacaaataatgccatcaatattAATTTGCAgttatt
                     tccgattCCTGATATAATAAAGAAGAAttatttttgttcggtgtaaaggatagtatga
                     a"
                     /listShort="S179, cspC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       541114..541231
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_559146_559263"
                     /HighExp="B60, LoTm, T5.0H, T3.30H, M9-stat, BI, BC, C90,
                     T3.0H, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S179"
     upshifts        541114
                     /Source="Nicolas_upshifts"
                     /id="U395"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.561438561438561"
                     /psig=1
                     /xcortree=3090
                     /SigmaFactorBS="aagtttaacaaataatgccatcaatattAATTTGCAgttatt
                     tccgattCCTGATATAATAAAGAAGAAttatttttgttcggtgtaaaggatagtatga
                     a"
                     /listShort="S179, cspC"
                     /GFF_Attribute="listLong"
     downshifts      complement(541149)
                     /Source="Nicolas_upshifts"
                     /id="D242"
                     /incds=0
                     /nref=10
                     /ntot=93
                     /MaxReadThrough="1.86628"
                     /MaxDrop="4.19111"
                     /score="25.1917407"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U396"
                     /TUdmin=328
                     /isTUend="FALSE"
     CDS             541232..541432
                     /gene="cspC"
                     /locus_tag="BSU_05120"
                     /old_locus_tag="BSU05120"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9379903, 9914312, 9920884, 10517332, 11591689,
                     12427936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9379903, 9914312,
                     9920884, 10517332, 11591689, 12427936; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="NP_388393.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05120"
                     /db_xref="EnsemblGenomes-Tr:CAB12319"
                     /db_xref="GOA:P39158"
                     /db_xref="InterPro:IPR002059"
                     /db_xref="InterPro:IPR011129"
                     /db_xref="InterPro:IPR012156"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR019844"
                     /db_xref="SubtiList:BG11024"
                     /db_xref="UniProtKB/Swiss-Prot:P39158"
                     /translation="MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEG
                     QKVSFDVEQGARGAQAANVQKA*"
     gene            541232..541432
                     /gene="cspC"
                     /locus_tag="BSU_05120"
                     /old_locus_tag="BSU05120"
     S_feature       complement(541330..542118)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_559362_560150_c"
                     /HighExp="LoTm, B60, Cold, M9-stat, LPhT, B36, Sw, BC, S8,
                     Salt"
                     /AntisenseName="cspC"
                     /AntisenseCor="0.39074308987975698"
                     /AntisenseRegPval="-10.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S180"
     downshifts      541335
                     /Source="Nicolas_upshifts"
                     /id="D243"
                     /incds=1
                     /nref=19
                     /ntot=179
                     /MaxReadThrough="8.05368"
                     /MaxDrop="3.4464"
                     /score="27.3387234"
                     /energy="-11.3"
                     /TU="U395"
                     /idTUdmin="U394"
                     /TUdmin=242
                     /isTUend="FALSE"
     downshifts      541436
                     /Source="Nicolas_upshifts"
                     /id="D244"
                     /incds=0
                     /nref=65
                     /ntot=246
                     /MaxReadThrough="5.78621"
                     /MaxDrop="5.83905"
                     /score="27.3387234"
                     /energy="-11.3"
                     /TU="U395"
                     /idTUdmin="U394"
                     /TUdmin=343
                     /isTUend="FALSE"
     misc_RNA        complement(541500..541578)
                     /gene="sncZ"
                     /locus_tag="BSU_misc_RNA_66"
                     /product="putative small conserved untranslated RNA"
                     /experiment="publication(s) with functional evidences,
                     PMID:20525796"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20525796; Product type n:
                     RNA"
     gene            complement(541500..541578)
                     /gene="sncZ"
                     /locus_tag="BSU_misc_RNA_66"
     CDS             complement(542119..542580)
                     /gene="cdnL"
                     /locus_tag="BSU_05130"
                     /old_locus_tag="BSU05130"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 26849219; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator for repair and
                     outgrowth of heat damaged spores"
                     /protein_id="NP_388394.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05130"
                     /db_xref="EnsemblGenomes-Tr:CAB12320"
                     /db_xref="InterPro:IPR003711"
                     /db_xref="InterPro:IPR036101"
                     /db_xref="SubtiList:BG12129"
                     /db_xref="UniProtKB/Swiss-Prot:P96659"
                     /translation="MFQIGDNIVYPMHGAGIIEAIEEKEFLEEKQQYYVIRMSISNMT
                     VMIPTSKILSSNIRPVTDILALKHIMHIFQHGESDRLLPWKQRYKINTDKIKTGEIQE
                     GAEVVRDLMRMKKEKALNASEKKMLDNAYEFLISELEVIKGITEKQIKSFG*"
     gene            complement(542119..542580)
                     /gene="cdnL"
                     /locus_tag="BSU_05130"
                     /old_locus_tag="BSU05130"
     S_feature       542589..543134
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_560621_561166"
                     /HighExp="Cold, G135, S8, G180, LoTm, S7, G150, HPh,
                     Paraq, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S181"
     upshifts        complement(542632)
                     /Source="Nicolas_upshifts"
                     /id="U396"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=427
                     /SigmaFactorBS="ttcaaaaaagtTATTGACAtcaaaaattcgatcaTGTTATTA
                     TTAAAATTTTGAtattacacctccatatatggtaatcttaagaaggataccatatatg
                     g"
                     /listShort="ydeB, S180"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(542639..542658)
                     /Source="Nicolas_upshift_promotors"
                     /id="U396"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=427
                     /SigmaFactorBS="ttcaaaaaagtTATTGACAtcaaaaattcgatcaTGTTATTA
                     TTAAAATTTTGAtattacacctccatatatggtaatcttaagaaggataccatatatg
                     g"
                     /listShort="ydeB, S180"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(542674..542681)
                     /Source="Nicolas_upshift_promotors"
                     /id="U396"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=427
                     /SigmaFactorBS="ttcaaaaaagtTATTGACAtcaaaaattcgatcaTGTTATTA
                     TTAAAATTTTGAtattacacctccatatatggtaatcttaagaaggataccatatatg
                     g"
                     /listShort="ydeB, S180"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      543101
                     /Source="Nicolas_upshifts"
                     /id="D245"
                     /incds=0
                     /nref=7
                     /ntot=141
                     /MaxReadThrough="0.289110000000001"
                     /MaxDrop="4.3701"
                     /score="26.1823933"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U395"
                     /TUdmin=864
                     /isTUend="FALSE"
     CDS             complement(543148..543384)
                     /gene="ydzE"
                     /locus_tag="BSU_05140"
                     /old_locus_tag="BSU05140"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388395.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05140"
                     /db_xref="EnsemblGenomes-Tr:CAB12321"
                     /db_xref="GOA:O31493"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12808"
                     /db_xref="UniProtKB/Swiss-Prot:O31493"
                     /translation="MYLGIVSTACAFLLWNHGLQLLNASSGGLFFFFQPLVGTLLGWI
                     LLGEQIGGTFWIGSFLILSGVLLVIKEKEKEVKS*"
     gene            complement(543148..543384)
                     /gene="ydzE"
                     /locus_tag="BSU_05140"
                     /old_locus_tag="BSU05140"
     CDS             complement(543482..544357)
                     /gene="ydeC"
                     /locus_tag="BSU_05150"
                     /old_locus_tag="BSU05150"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10704478; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family)"
                     /protein_id="NP_388396.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05150"
                     /db_xref="EnsemblGenomes-Tr:CAB12322"
                     /db_xref="GOA:P96660"
                     /db_xref="InterPro:IPR003313"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="InterPro:IPR020449"
                     /db_xref="SubtiList:BG12130"
                     /db_xref="UniProtKB/Swiss-Prot:P96660"
                     /translation="MKNFVIDQNLKELTEHRTVELPVACYKTTINQNINGYIPLHWHD
                     EIQFVLILKGIALFQINEEKIEVHEGDGLFINSGYLHMAEEKEGSDCTYICLNVSPHF
                     VLSQELYSSYVQPYMFSTNLPYLFLAGNQQWAKNILDAVKKINQLIQQKTSLYEIDIT
                     MQLTLMWKNLVVNGFQLEYDQSEMIKSHRMKQMLNWIHLHYVEKITLEDIAKAGQLSR
                     SECCRYFKRMLNKTPLRYVMDYRIQKSLLLLQHPESNVTEVSYQVGFNSTSYFISKFQ
                     QAMNMTPLSYKKMNS*"
     gene            complement(543482..544357)
                     /gene="ydeC"
                     /locus_tag="BSU_05150"
                     /old_locus_tag="BSU05150"
     CDS             544470..545429
                     /gene="ydeD"
                     /locus_tag="BSU_05160"
                     /old_locus_tag="BSU05160"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388397.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05160"
                     /db_xref="EnsemblGenomes-Tr:CAB12323"
                     /db_xref="GOA:P96661"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12131"
                     /db_xref="UniProtKB/Swiss-Prot:P96661"
                     /translation="MNTSNRRMGLFYVITGATCWGIGGTVAKKLFQEYQIDVNWLVTT
                     RLLTAGMLLLMLQLFRKDRSQVIEVWKHKASAGQLLIFGLLGMLAVQYTYMASIQHGN
                     AAVATLLQYLSPVIVIIYTLLRKQTVLTKQDIITVVLALVGCFFLLTNGSMSQLSVPA
                     AAVVWGVLSGFAAAFYTLYAVGLLNKFDSLVVVGWAMIIGGFALGFIHPPWQLDFQRL
                     TAEAYAYILFVILFGTMIAFWFFIKSLESLSPKETSLLGSLEPLSAVVTTVVWLKAPF
                     GSFQWIGAICIIGITLILALHKEPSMESEKSILKIRNHANRDI*"
     gene            544470..545429
                     /gene="ydeD"
                     /locus_tag="BSU_05160"
                     /old_locus_tag="BSU05160"
     upshifts        complement(544491)
                     /Source="Nicolas_upshifts"
                     /id="U397"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.808191808191808"
                     /xcortree=1969
                     /SigmaFactorBS="tggctactgtgcctccaatcccccaacatgtcgccccTGTGA
                     TAACATAGAACAATCccattcttctattggaagtattcatacatgactcctcactaat
                     a"
                     /listShort="ydeC"
                     /GFF_Attribute="listLong"
     misc_feature    complement(544495..544514)
                     /Source="Nicolas_upshift_promotors"
                     /id="U397"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.808191808191808"
                     /xcortree=1969
                     /SigmaFactorBS="tggctactgtgcctccaatcccccaacatgtcgccccTGTGA
                     TAACATAGAACAATCccattcttctattggaagtattcatacatgactcctcactaat
                     a"
                     /listShort="ydeC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             complement(545582..546454)
                     /gene="ydeE"
                     /locus_tag="BSU_05170"
                     /old_locus_tag="BSU05170"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family)"
                     /protein_id="NP_388398.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05170"
                     /db_xref="EnsemblGenomes-Tr:CAB12324"
                     /db_xref="GOA:P96662"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR010499"
                     /db_xref="InterPro:IPR011256"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="InterPro:IPR020449"
                     /db_xref="InterPro:IPR029442"
                     /db_xref="SubtiList:BG12132"
                     /db_xref="UniProtKB/Swiss-Prot:P96662"
                     /translation="MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSF
                     LAGISLSEYIRRRRLTLAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINPSK
                     ARFNGHSLKAYPRMTFQLTIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIAS
                     MWESLDEKAINKLKELSNVAPSGLISASTNFSEGRTEENGELDHYIGAATTKRCPDNF
                     SRLEVPASTWAVFESIGPFPDTLQEVWGRIYSEWFPSSNYEQIEGPEILWNEHKDVTS
                     PSFKSEIWIPITKK*"
     gene            complement(545582..546454)
                     /gene="ydeE"
                     /locus_tag="BSU_05170"
                     /old_locus_tag="BSU05170"
     promotor_-10    complement(546547..546552)
                     /Source="Nicolas_upshift_promotors"
                     /id="U398"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.380619380619381"
                     /psig="0.432567432567433"
                     /xcortree=1464
                     /SigmaFactorBS="cttttattgatgcctttttatgaacagcatgcttcaataaaa
                     cctgtacaaatacaagtgaatcACtTACTTTatttcatataagtcatcctgcaaaact
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(546554..546555)
                     /Source="Nicolas_upshift_promotors"
                     /id="U398"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.380619380619381"
                     /psig="0.432567432567433"
                     /xcortree=1464
                     /SigmaFactorBS="cttttattgatgcctttttatgaacagcatgcttcaataaaa
                     cctgtacaaatacaagtgaatcACtTACTTTatttcatataagtcatcctgcaaaact
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(546559)
                     /Source="Nicolas_upshifts"
                     /id="U398"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.380619380619381"
                     /psig="0.432567432567433"
                     /xcortree=1464
                     /SigmaFactorBS="cttttattgatgcctttttatgaacagcatgcttcaataaaa
                     cctgtacaaatacaagtgaatcACtTACTTTatttcatataagtcatcctgcaaaact
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    546628..546634
                     /Source="Nicolas_upshift_promotors"
                     /id="U399"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.408591408591409"
                     /psig="0.98101898101898"
                     /xcortree=1860
                     /SigmaFactorBS="attgaagcatgctgttcataaaaaggcatcaataaaagaaag
                     ttatAATTGTCttataaacggcacATTCATATAATTGAGTGAAAaaggatgcgtatca
                     t"
                     /listShort="ydeF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        546642
                     /Source="Nicolas_upshifts"
                     /id="U399"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.408591408591409"
                     /psig="0.98101898101898"
                     /xcortree=1860
                     /SigmaFactorBS="attgaagcatgctgttcataaaaaggcatcaataaaagaaag
                     ttatAATTGTCttataaacggcacATTCATATAATTGAGTGAAAaaggatgcgtatca
                     t"
                     /listShort="ydeF"
                     /GFF_Attribute="listLong"
     promotor_-10    546648..546667
                     /Source="Nicolas_upshift_promotors"
                     /id="U399"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.408591408591409"
                     /psig="0.98101898101898"
                     /xcortree=1860
                     /SigmaFactorBS="attgaagcatgctgttcataaaaaggcatcaataaaagaaag
                     ttatAATTGTCttataaacggcacATTCATATAATTGAGTGAAAaaggatgcgtatca
                     t"
                     /listShort="ydeF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             546681..548069
                     /gene="ydeF"
                     /locus_tag="BSU_05180"
                     /old_locus_tag="BSU05180"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 28348215;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388399.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05180"
                     /db_xref="EnsemblGenomes-Tr:CAB12325"
                     /db_xref="GOA:P96663"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12133"
                     /db_xref="UniProtKB/Swiss-Prot:P96663"
                     /translation="MPINSFENYPMSWKPSIDKAEKPIYKALAGQLEQDILNGVLLPG
                     TKLPPQRELADYLDLNVSTISKAFKVCELKGLLSATVGSGTFVSYDALSNAYLLEDTK
                     PTHLIEMGAILPDHASYEPLLYQLKNMVHEEDYEKWFSYGRAGESLWQKDAAVKLIQR
                     GGFETSVDHILFANGGQNAIAATLASLCKPGDRIGVDHHTYPGLKTVASLLSVQIVPI
                     KSENDEMSPESLEYACKNENIKGLYLIPDYHNPTTSFMSVENRRMVADIVKKYNLFVI
                     EDASYHLLNKNPLPALASFAPQQVIHIASLSKSLAPGLRLAYVAVPRQYKEPISKALY
                     NLNITVSPLLAELTARTIVSNQFEVLIESHREQTIRRNQLVNRYVAGYTCLGVETGIF
                     RWLLLPGKMSGAEFEELAARLGVQVYAAERFVVGNSCPERAVRVSVCAPKTLEELEQG
                     LMILRRLLDDLT*"
     gene            546681..548069
                     /gene="ydeF"
                     /locus_tag="BSU_05180"
                     /old_locus_tag="BSU05180"
     downshifts      548045
                     /Source="Nicolas_upshifts"
                     /id="D246"
                     /incds=0
                     /nref=2
                     /ntot=61
                     /MaxReadThrough="0.91547"
                     /MaxDrop="3.65963"
                     /score="12.298375"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U399"
                     /TUdmin=176
                     /isTUend="FALSE"
     CDS             548179..549471
                     /gene="ydeG"
                     /locus_tag="BSU_05190"
                     /old_locus_tag="BSU05190"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388400.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05190"
                     /db_xref="EnsemblGenomes-Tr:CAB12326"
                     /db_xref="GOA:P96664"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12134"
                     /db_xref="UniProtKB/Swiss-Prot:P96664"
                     /translation="MMLDKDSVKAIDVQTASLQSYISSPEKQKSLYKRTLFVVSISQI
                     FGGAGLAAGVTVGALIAQQMLGTDAFAGLPSALFTLGSAGSALIVGRLSQRYGRRTGL
                     SAGFMIGGLGAIGVIMAAIINSIFLLFISLLIYGAGTATNLQARYAGTDLANHKQRAT
                     AVSITMVFTTFGAVAGPSLVNVMGDFALSIGVPSLAGPFILAAAAYMLAGVVLFIMLR
                     PDPLVIARTIEAANEEPGDKGHLAATEHTENKKGIIVGATVMVLTQIVMVAIMTMTPV
                     HMRHHGHDLGAVGLVIGFHIGAMYLPSLVTGVLVDRLGRTAMAISSGTTLLLAGVIAA
                     FAPGESMILLVIALSLLGLGWNFGLISGTALIVDSTDTATRAKTQGTVDVLIALSGAA
                     GGALSGMIVAGSSYLALSLIGGILSLLLIPVVVWSRGR*"
     gene            548179..549471
                     /gene="ydeG"
                     /locus_tag="BSU_05190"
                     /old_locus_tag="BSU05190"
     promotor_-35    549480..549486
                     /Source="Nicolas_upshift_promotors"
                     /id="U400"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.737262737262737"
                     /psig=1
                     /xcortree=2927
                     /SigmaFactorBS="gtggtatggtctaggggccgctaaagggtaggATTGTTTaat
                     ttacattaattTGTTATATTGTTAGATAAAGtatattgcagcatctaatattctaacg
                     a"
                     /listShort="S182, ydeH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    549501..549520
                     /Source="Nicolas_upshift_promotors"
                     /id="U400"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.737262737262737"
                     /psig=1
                     /xcortree=2927
                     /SigmaFactorBS="gtggtatggtctaggggccgctaaagggtaggATTGTTTaat
                     ttacattaattTGTTATATTGTTAGATAAAGtatattgcagcatctaatattctaacg
                     a"
                     /listShort="S182, ydeH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        549508
                     /Source="Nicolas_upshifts"
                     /id="U400"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.737262737262737"
                     /psig=1
                     /xcortree=2927
                     /SigmaFactorBS="gtggtatggtctaggggccgctaaagggtaggATTGTTTaat
                     ttacattaattTGTTATATTGTTAGATAAAGtatattgcagcatctaatattctaacg
                     a"
                     /listShort="S182, ydeH"
                     /GFF_Attribute="listLong"
     S_feature       549519..549629
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_567551_567661"
                     /HighExp="LoTm, T4.0H, T3.30H, T2.30H, T3.0H, T2.0H,
                     T1.30H, T5.0H, T1.0H, T-0.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S182"
     CDS             549630..550076
                     /gene="ydeH"
                     /locus_tag="BSU_05200"
                     /old_locus_tag="BSU05200"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388401.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05200"
                     /db_xref="EnsemblGenomes-Tr:CAB12327"
                     /db_xref="GOA:P96665"
                     /db_xref="SubtiList:BG12135"
                     /db_xref="UniProtKB/Swiss-Prot:P96665"
                     /translation="MNHIKWLSDLKKAGLLALGKGVITLLKRFSLVIVTLMMSIVVVL
                     AAAKESPGDHVISFDEPIILMISIGIVVFLLIPPLVMSFFGNLVVRIISGVYQCFIVF
                     TFLGLIPIGFLIPNGFLTILVSIAGTLVSIASVAVTLCIGKNKKDI*"
     gene            549630..550076
                     /gene="ydeH"
                     /locus_tag="BSU_05200"
                     /old_locus_tag="BSU05200"
     downshifts      550105
                     /Source="Nicolas_upshifts"
                     /id="D247"
                     /incds=0
                     /nref=200
                     /ntot=251
                     /MaxReadThrough="2.56495"
                     /MaxDrop="6.50538"
                     /score="-1.7193297"
                     /energy="-4.5"
                     /TU="NA"
                     /idTUdmin="U400"
                     /TUdmin="-8"
                     /isTUend="TRUE"
     promotor_-35    550156..550163
                     /Source="Nicolas_upshift_promotors"
                     /id="U401"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.921078921078921"
                     /psig="0.99100899100899"
                     /xcortree=2390
                     /SigmaFactorBS="tacaaaaagagaaggcttgtgggccttctttttttgtTGTTG
                     CATcatccccactttgaGCTTAATCTATTGAATAATAagagaaggaacctatagaaga
                     a"
                     /listShort="ydeI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    550178..550197
                     /Source="Nicolas_upshift_promotors"
                     /id="U401"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.921078921078921"
                     /psig="0.99100899100899"
                     /xcortree=2390
                     /SigmaFactorBS="tacaaaaagagaaggcttgtgggccttctttttttgtTGTTG
                     CATcatccccactttgaGCTTAATCTATTGAATAATAagagaaggaacctatagaaga
                     a"
                     /listShort="ydeI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        550179
                     /Source="Nicolas_upshifts"
                     /id="U401"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.921078921078921"
                     /psig="0.99100899100899"
                     /xcortree=2390
                     /SigmaFactorBS="tacaaaaagagaaggcttgtgggccttctttttttgtTGTTG
                     CATcatccccactttgaGCTTAATCTATTGAATAATAagagaaggaacctatagaaga
                     a"
                     /listShort="ydeI"
                     /GFF_Attribute="listLong"
     CDS             550313..550906
                     /gene="ydeI"
                     /locus_tag="BSU_05210"
                     /old_locus_tag="BSU05210"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16390439"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388402.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05210"
                     /db_xref="EnsemblGenomes-Tr:CAB12328"
                     /db_xref="InterPro:IPR014922"
                     /db_xref="InterPro:IPR016786"
                     /db_xref="SubtiList:BG12136"
                     /db_xref="UniProtKB/Swiss-Prot:P96666"
                     /translation="MTNSRTNPKVDEFLSKAKKWKEEFEKLRTIILDCELTEDFKWMH
                     PCYTYHNKNIVLIHGFKEYCALLFHKGVLLQDTDGILIQQTENVQAARQIRFTNVQEI
                     NELENILKAYIHEAIEVEKAGLKVDVNKNIELNIPEELQNKFDEIPALKIAFEALTPG
                     RQRAYTLYFSQAKQSKTRESRVEKYVQKILDGKGLKD*"
     gene            550313..550906
                     /gene="ydeI"
                     /locus_tag="BSU_05210"
                     /old_locus_tag="BSU05210"
     downshifts      550949
                     /Source="Nicolas_upshifts"
                     /id="D248"
                     /incds=0
                     /nref=2
                     /ntot=40
                     /MaxReadThrough="1.63432"
                     /MaxDrop="2.96785"
                     /score="2.93671425"
                     /energy="-6.9"
                     /TU="NA"
                     /idTUdmin="U401"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(551025)
                     /Source="Nicolas_upshifts"
                     /id="D249"
                     /incds=0
                     /nref=1
                     /ntot=64
                     /MaxReadThrough="2.19009"
                     /MaxDrop="2.9369"
                     /score="-1.28013562"
                     /energy="-6.9"
                     /TU="NA"
                     /idTUdmin="U403"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    551038..551045
                     /Source="Nicolas_upshift_promotors"
                     /id="U402"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.707292707292707"
                     /psig="0.996003996003996"
                     /xcortree=378
                     /SigmaFactorBS="tcttaggacaacattcacttactgctgaaatgcttctaaCAT
                     TGTATgccactagacagcgTTATAAAATATTAATGCAACacctagaaatctatccaat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        551059
                     /Source="Nicolas_upshifts"
                     /id="U402"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.707292707292707"
                     /psig="0.996003996003996"
                     /xcortree=378
                     /SigmaFactorBS="tcttaggacaacattcacttactgctgaaatgcttctaaCAT
                     TGTATgccactagacagcgTTATAAAATATTAATGCAACacctagaaatctatccaat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    551060..551079
                     /Source="Nicolas_upshift_promotors"
                     /id="U402"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.707292707292707"
                     /psig="0.996003996003996"
                     /xcortree=378
                     /SigmaFactorBS="tcttaggacaacattcacttactgctgaaatgcttctaaCAT
                     TGTATgccactagacagcgTTATAAAATATTAATGCAACacctagaaatctatccaat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             complement(551258..551917)
                     /gene="ydeJ"
                     /locus_tag="BSU_05220"
                     /old_locus_tag="BSU05220"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388403.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05220"
                     /db_xref="EnsemblGenomes-Tr:CAB12329"
                     /db_xref="GOA:P96667"
                     /db_xref="SubtiList:BG12137"
                     /db_xref="UniProtKB/Swiss-Prot:P96667"
                     /translation="MKKRRKICYCNTALLLMILLAGCTDSKDGEAQQPSNQASAVQTD
                     EKHTEPEESTKIRKDEAEPITESEESATKAANDTSSAEEKSKEDNVLAAYSSEKIEYA
                     RVWLQLGPNQEIDELNVRHIAAGEPINPNDDTSASYPENVTQLAGSRLVDGSVTYHGN
                     GDGTIHVYNVPLRWDSADDIEKGVMREVTESIIKNRKTVYVDTGDDEKIKRLIDIMMI
                     H*"
     gene            complement(551258..551917)
                     /gene="ydeJ"
                     /locus_tag="BSU_05220"
                     /old_locus_tag="BSU05220"
     promotor_-10    complement(551966..551985)
                     /Source="Nicolas_upshift_promotors"
                     /id="U403"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.997002997002997"
                     /xcortree=3174
                     /SigmaFactorBS="agatcgtttcctcttcttaaacagttttcaaTATCATcctat
                     ctattcCATGGTAATATTTAGATACAtaaacttatatatgaagctgacctgaattaat
                     a"
                     /listShort="ydeJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(551973)
                     /Source="Nicolas_upshifts"
                     /id="U403"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.997002997002997"
                     /xcortree=3174
                     /SigmaFactorBS="agatcgtttcctcttcttaaacagttttcaaTATCATcctat
                     ctattcCATGGTAATATTTAGATACAtaaacttatatatgaagctgacctgaattaat
                     a"
                     /listShort="ydeJ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(551997..552002)
                     /Source="Nicolas_upshift_promotors"
                     /id="U403"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig="0.997002997002997"
                     /xcortree=3174
                     /SigmaFactorBS="agatcgtttcctcttcttaaacagttttcaaTATCATcctat
                     ctattcCATGGTAATATTTAGATACAtaaacttatatatgaagctgacctgaattaat
                     a"
                     /listShort="ydeJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(552339..553202)
                     /gene="ydeK"
                     /locus_tag="BSU_05230"
                     /old_locus_tag="BSU05230"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_388404.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05230"
                     /db_xref="EnsemblGenomes-Tr:CAB12330"
                     /db_xref="GOA:P96668"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12138"
                     /db_xref="UniProtKB/Swiss-Prot:P96668"
                     /translation="MNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAI
                     AGVLAGGLLLIFRQQHPAKRDLISLLVVAFGVVIGFPLLTALALQHVTSAHAIVFIGL
                     LPLATAVFGVLRGGERPRPVFWIFSAAGSLLVAGFALIQGGGSSPLGDAYMLASIVVC
                     GLGYAEGAKLSRRLGNWQVISWALVLSLPLMLPLSFFFTPDSWSAIGVPALLSLAYVS
                     LFSMLIGFVFWYRGLAQGGIAAVGQLQLLQPFFGLLLASVILHEKVGWALVAVNIAVI
                     MCVAAARRFAK*"
     gene            complement(552339..553202)
                     /gene="ydeK"
                     /locus_tag="BSU_05230"
                     /old_locus_tag="BSU05230"
     promotor_-35    553245..553251
                     /Source="Nicolas_upshift_promotors"
                     /id="U404"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.548451548451548"
                     /psig="0.97002997002997"
                     /xcortree=639
                     /SigmaFactorBS="ctttcttgttcattgtctgtatttTCTTAACaaaaccagcag
                     ctaAGGATTACAATGACTATAAActggaattggccttttataaacagccagttttcat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    553266..553285
                     /Source="Nicolas_upshift_promotors"
                     /id="U404"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.548451548451548"
                     /psig="0.97002997002997"
                     /xcortree=639
                     /SigmaFactorBS="ctttcttgttcattgtctgtatttTCTTAACaaaaccagcag
                     ctaAGGATTACAATGACTATAAActggaattggccttttataaacagccagttttcat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(553267..553286)
                     /Source="Nicolas_upshift_promotors"
                     /id="U405"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.811188811188811"
                     /psig="0.997002997002997"
                     /xcortree=412
                     /SigmaFactorBS="cgttgttctcctaactggtatgcatttttttatgaaaactgg
                     cTGTTTATAaaaggccaattccaGTTTATAGTCATTGTAATCCttagctgctggtttt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        553281
                     /Source="Nicolas_upshifts"
                     /id="U404"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.548451548451548"
                     /psig="0.97002997002997"
                     /xcortree=639
                     /SigmaFactorBS="ctttcttgttcattgtctgtatttTCTTAACaaaaccagcag
                     ctaAGGATTACAATGACTATAAActggaattggccttttataaacagccagttttcat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     upshifts        complement(553291)
                     /Source="Nicolas_upshifts"
                     /id="U405"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.811188811188811"
                     /psig="0.997002997002997"
                     /xcortree=412
                     /SigmaFactorBS="cgttgttctcctaactggtatgcatttttttatgaaaactgg
                     cTGTTTATAaaaggccaattccaGTTTATAGTCATTGTAATCCttagctgctggtttt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(553301..553308)
                     /Source="Nicolas_upshift_promotors"
                     /id="U405"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.811188811188811"
                     /psig="0.997002997002997"
                     /xcortree=412
                     /SigmaFactorBS="cgttgttctcctaactggtatgcatttttttatgaaaactgg
                     cTGTTTATAaaaggccaattccaGTTTATAGTCATTGTAATCCttagctgctggtttt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             553357..554748
                     /gene="ydeL"
                     /locus_tag="BSU_05240"
                     /old_locus_tag="BSU05240"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 28348215;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388405.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05240"
                     /db_xref="EnsemblGenomes-Tr:CAB12331"
                     /db_xref="GOA:P96669"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12139"
                     /db_xref="UniProtKB/Swiss-Prot:P96669"
                     /translation="MDITPFLNRTLDIPLYQQLYRYFKENMHRGRIQKGMKLPSKRLL
                     ANQLSISQTTVERAYEQLAAEGYIVSKPRSGWFADYHDSDFAYDRMPSTTPIQQEAEE
                     NKQWIDFHYGNVDSSYFPFSAWRKSMVNSLDQYGHELYRPGHVLGEFELRTLIAEYLY
                     QSRGVHCGPEQVIIGAGNPILLQILCQVFEPNISIGYEDPGYPRARKIFEANRMNIVP
                     IPVDDEGICIQKIKEQQPNLVYVTPSHQFTLGTIMTINRRIQLLKWAAENQSFIIEDD
                     YDGEFRYTGQPVPSLQGLDQHNRVIYMGTFSKSLLPSLRISYMILPSPLLKKGHEITS
                     LYKQTVSCHSQLTLAEFIKNGEWQKHINRMRKLYRKKRAIVLEAVQRELGEHVRIRGE
                     NSGLRILLDVYLPFGEKELIEKAKKHGVKIYPVSLSYQHHPPTKTVSLGFAGVSESDI
                     REGIKKLKAAWKI*"
     gene            553357..554748
                     /gene="ydeL"
                     /locus_tag="BSU_05240"
                     /old_locus_tag="BSU05240"
     promotor_-35    554876..554883
                     /Source="Nicolas_upshift_promotors"
                     /id="U406"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig="0.999000999001"
                     /xcortree=2260
                     /SigmaFactorBS="gatacgtctgtttagcgaaaaacagaatTTTTTATTtgctcc
                     tcacAGTGCTAAAATAAACAAAATagacaattgaaaaaatagaggtgtaagaatgaag
                     t"
                     /listShort="ydeM, S183"
                     /listLong="ydeO"
                     /label="promotor_-35"
     promotor_-10    554894..554913
                     /Source="Nicolas_upshift_promotors"
                     /id="U406"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig="0.999000999001"
                     /xcortree=2260
                     /SigmaFactorBS="gatacgtctgtttagcgaaaaacagaatTTTTTATTtgctcc
                     tcacAGTGCTAAAATAAACAAAATagacaattgaaaaaatagaggtgtaagaatgaag
                     t"
                     /listShort="ydeM, S183"
                     /listLong="ydeO"
                     /label="promotor_-10"
     upshifts        554908
                     /Source="Nicolas_upshifts"
                     /id="U406"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig="0.999000999001"
                     /xcortree=2260
                     /SigmaFactorBS="gatacgtctgtttagcgaaaaacagaatTTTTTATTtgctcc
                     tcacAGTGCTAAAATAAACAAAATagacaattgaaaaaatagaggtgtaagaatgaag
                     t"
                     /listShort="ydeM, S183"
                     /listLong="ydeO"
     CDS             554942..555367
                     /gene="ydeM"
                     /locus_tag="BSU_05250"
                     /old_locus_tag="BSU05250"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 1556068, 26349822;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative dehydratase"
                     /protein_id="NP_388406.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05250"
                     /db_xref="EnsemblGenomes-Tr:CAB12332"
                     /db_xref="InterPro:IPR002539"
                     /db_xref="InterPro:IPR029069"
                     /db_xref="SubtiList:BG12140"
                     /db_xref="UniProtKB/Swiss-Prot:P96670"
                     /translation="MKLDEFTIGQVFKTKSLKVSKDDIMRFAGEFDPQYMHVDEEKAS
                     KGRFNGIIASGIQTLAISFKLWIEEGFYGDDIIAGTEMNHMTFIKPVYPDDELFTIVE
                     VLDKQPKRNELGILTVLLSTYNQKEVKVFEGELSVLIKR*"
     gene            554942..555367
                     /gene="ydeM"
                     /locus_tag="BSU_05250"
                     /old_locus_tag="BSU05250"
     S_feature       555368..556622
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_573400_574654"
                     /HighExp="G135, H2O2, G150, HiOs, G180, Cold, Paraq, UNK1,
                     MG 15, LBGexp"
                     /AntisenseName="ydeN"
                     /AntisenseCor="0.40423774227585801"
                     /AntisenseRegPval="-11.3"
                     /CDS_PredictionProba="0.127641"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S183"
     CDS             complement(555420..555992)
                     /gene="ydeN"
                     /locus_tag="BSU_05260"
                     /old_locus_tag="BSU05260"
                     /EC_number="3.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15159570; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative alpha/beta hydrolase"
                     /protein_id="NP_388407.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05260"
                     /db_xref="EnsemblGenomes-Tr:CAB12333"
                     /db_xref="GOA:P96671"
                     /db_xref="InterPro:IPR010662"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:1UXO"
                     /db_xref="SubtiList:BG12141"
                     /db_xref="UniProtKB/Swiss-Prot:P96671"
                     /translation="MTKQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQ
                     PRLEDWLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLRKQLGGIILVSGFAKS
                     LPTLQMLDEFTQGSFDHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQIDAALYEVQ
                     HGGHFLEDEGFTSLPIVYDVLTSYFSKETR*"
     gene            complement(555420..555992)
                     /gene="ydeN"
                     /locus_tag="BSU_05260"
                     /old_locus_tag="BSU05260"
     downshifts      complement(555425)
                     /Source="Nicolas_upshifts"
                     /id="D250"
                     /incds=0
                     /nref=16
                     /ntot=160
                     /MaxReadThrough="1.96868"
                     /MaxDrop="3.80195"
                     /score="2.50673989"
                     /energy="-11.3"
                     /TU="NA"
                     /idTUdmin="U407"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(555993..556073)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_574025_574105_c"
                     /HighExp="dia15, dia5, Diami, Etha, LPhT, Lbtran, Heat,
                     H2O2, Sw, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.955"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S184"
     CDS             complement(556074..556403)
                     /gene="ydzF"
                     /locus_tag="BSU_05270"
                     /old_locus_tag="BSU05270"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388408.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05270"
                     /db_xref="EnsemblGenomes-Tr:CAB12334"
                     /db_xref="GOA:O31494"
                     /db_xref="InterPro:IPR002577"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12809"
                     /db_xref="UniProtKB/Swiss-Prot:O31494"
                     /translation="MNSLCRSKQAPFEYTLSLIGGKWKMRILYELGCEKTMRYGELKR
                     AMPFITHKMLSAQLKELQTDGLIHRSEVSHTPLKVEYSLSDRGRSLYPLIDEMCKWGM
                     AQGGPHM*"
     gene            complement(556074..556403)
                     /gene="ydzF"
                     /locus_tag="BSU_05270"
                     /old_locus_tag="BSU05270"
     misc_feature    complement(556420..556439)
                     /Source="Nicolas_upshift_promotors"
                     /id="U407"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.955044955044955"
                     /xcortree=1959
                     /SigmaFactorBS="cctttcacttcagatcgtgaatcgccctcaaacttcaacacc
                     gaaaatcctaatttatTCTGATATGATACTTAAAAAaggaggtttgattacaatgaat
                     a"
                     /listShort="ydzF, S184, ydeN"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(556437)
                     /Source="Nicolas_upshifts"
                     /id="U407"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.955044955044955"
                     /xcortree=1959
                     /SigmaFactorBS="cctttcacttcagatcgtgaatcgccctcaaacttcaacacc
                     gaaaatcctaatttatTCTGATATGATACTTAAAAAaggaggtttgattacaatgaat
                     a"
                     /listShort="ydzF, S184, ydeN"
                     /GFF_Attribute="listLong"
     misc_feature    556611..556630
                     /Source="Nicolas_upshift_promotors"
                     /id="U408"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig=1
                     /xcortree=2345
                     /SigmaFactorBS="agttactttatttaaaaaaacgcatgtttttagctgaaaata
                     tctatTATGGTATATTTAAATATAAagaaatatttgagaaatgaggaatggtatgaat
                     a"
                     /listShort="ydeO"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        556624
                     /Source="Nicolas_upshifts"
                     /id="U408"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig=1
                     /xcortree=2345
                     /SigmaFactorBS="agttactttatttaaaaaaacgcatgtttttagctgaaaata
                     tctatTATGGTATATTTAAATATAAagaaatatttgagaaatgaggaatggtatgaat
                     a"
                     /listShort="ydeO"
                     /GFF_Attribute="listLong"
     CDS             556658..557530
                     /gene="ydeO"
                     /locus_tag="BSU_05280"
                     /old_locus_tag="BSU05280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388409.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05280"
                     /db_xref="EnsemblGenomes-Tr:CAB12335"
                     /db_xref="GOA:P96672"
                     /db_xref="InterPro:IPR003740"
                     /db_xref="InterPro:IPR019264"
                     /db_xref="SubtiList:BG12142"
                     /db_xref="UniProtKB/Swiss-Prot:P96672"
                     /translation="MNTPKKHKKFKAKMILQIIMVIIGGIIAAYGLETVLIPNSVSDG
                     GVTGLSIVGSQLFNLPLGILIAVINIPFVWLGYKQIGKSFALLSIIGIVSLAAGTSFF
                     HHTPAIIEGDTLLITVVGGIILGFGMGLALRNGGALDGIDMLAVLLSRKLPFGTSDLI
                     LFLNLFVFIFVSTVFGLQGALLSVIAYYIASKVIHVVEEGLSGSKTFQIITTQPELMV
                     ETIRDQLGRSATYKEAYGGFSHEKFKEITCVINRLEETKLKEIINDIDKTAFVTVYDV
                     AEVKGSNFRNLNHH*"
     gene            556658..557530
                     /gene="ydeO"
                     /locus_tag="BSU_05280"
                     /old_locus_tag="BSU05280"
     downshifts      557417
                     /Source="Nicolas_upshifts"
                     /id="D251"
                     /incds=1
                     /nref=7
                     /ntot=181
                     /MaxReadThrough="3.84278"
                     /MaxDrop="2.68681"
                     /score="15.0132064"
                     /energy="-12.2"
                     /TU="U408"
                     /idTUdmin="U408"
                     /TUdmin="-198"
                     /isTUend="FALSE"
     downshifts      557615
                     /Source="Nicolas_upshifts"
                     /id="D252"
                     /incds=0
                     /nref=54
                     /ntot=208
                     /MaxReadThrough="1.19842"
                     /MaxDrop="3.77294"
                     /score="15.0132064"
                     /energy="-12.2"
                     /TU="NA"
                     /idTUdmin="U408"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(557680..558066)
                     /gene="ydeP"
                     /locus_tag="BSU_05290"
                     /old_locus_tag="BSU05290"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388410.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05290"
                     /db_xref="EnsemblGenomes-Tr:CAB12336"
                     /db_xref="GOA:P96673"
                     /db_xref="InterPro:IPR002577"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12143"
                     /db_xref="UniProtKB/Swiss-Prot:P96673"
                     /translation="MRNRKLGIDYSSDDFEGCPVETTLDIIGGKWKGILLYHLIDGKK
                     RFNEFRKLYPKITQRMLTLQLRELERDGVIHREVYKQVPPKVEYSLTEFGRTLEPVIL
                     HMKDWGEKYKDRIDKLEAARKAEDKI*"
     gene            complement(557680..558066)
                     /gene="ydeP"
                     /locus_tag="BSU_05290"
                     /old_locus_tag="BSU05290"
     downshifts      complement(557692)
                     /Source="Nicolas_upshifts"
                     /id="D253"
                     /incds=0
                     /nref=29
                     /ntot=191
                     /MaxReadThrough="0.85093"
                     /MaxDrop="4.4837"
                     /score="-9.3516261"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U409"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     S_feature       complement(558067..558131)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_576099_576163_c"
                     /HighExp="Diami, dia5, Salt, dia15, Etha, Heat, G180,
                     HiOs, LBGexp, HiTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S185"
     promotor_-35    558119..558126
                     /Source="Nicolas_upshift_promotors"
                     /id="U410"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.67032967032967"
                     /psig="0.936063936063936"
                     /xcortree=1790
                     /SigmaFactorBS="agtatactttttgatactatatacattcaatgtgcgTACTTT
                     TTatattttaatataCATCATATAATGATGTCACAtctaaggaatgaaaggaatggat
                     c"
                     /listShort="ydeQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(558120..558139)
                     /Source="Nicolas_upshift_promotors"
                     /id="U409"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.568431568431568"
                     /psig="0.999000999001"
                     /xcortree=1896
                     /SigmaFactorBS="gttttcatatgatccattcctttcattccttaGATGTGACat
                     cattatatgatgTATATTAAAATATAAAAAGTacgcacattgaatgtatatagtatca
                     a"
                     /listShort="S185, ydeP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(558133)
                     /Source="Nicolas_upshifts"
                     /id="U409"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.568431568431568"
                     /psig="0.999000999001"
                     /xcortree=1896
                     /SigmaFactorBS="gttttcatatgatccattcctttcattccttaGATGTGACat
                     cattatatgatgTATATTAAAATATAAAAAGTacgcacattgaatgtatatagtatca
                     a"
                     /listShort="S185, ydeP"
                     /GFF_Attribute="listLong"
     promotor_-10    558140..558159
                     /Source="Nicolas_upshift_promotors"
                     /id="U410"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.67032967032967"
                     /psig="0.936063936063936"
                     /xcortree=1790
                     /SigmaFactorBS="agtatactttttgatactatatacattcaatgtgcgTACTTT
                     TTatattttaatataCATCATATAATGATGTCACAtctaaggaatgaaaggaatggat
                     c"
                     /listShort="ydeQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        558143
                     /Source="Nicolas_upshifts"
                     /id="U410"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.67032967032967"
                     /psig="0.936063936063936"
                     /xcortree=1790
                     /SigmaFactorBS="agtatactttttgatactatatacattcaatgtgcgTACTTT
                     TTatattttaatataCATCATATAATGATGTCACAtctaaggaatgaaaggaatggat
                     c"
                     /listShort="ydeQ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(558154..558161)
                     /Source="Nicolas_upshift_promotors"
                     /id="U409"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.568431568431568"
                     /psig="0.999000999001"
                     /xcortree=1896
                     /SigmaFactorBS="gttttcatatgatccattcctttcattccttaGATGTGACat
                     cattatatgatgTATATTAAAATATAAAAAGTacgcacattgaatgtatatagtatca
                     a"
                     /listShort="S185, ydeP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             558177..558770
                     /gene="ydeQ"
                     /locus_tag="BSU_05300"
                     /old_locus_tag="BSU05300"
                     /EC_number="1.6.99.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NAD(P)H oxidoreductase involved in
                     regulating potassium efflux"
                     /protein_id="NP_388411.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05300"
                     /db_xref="EnsemblGenomes-Tr:CAB12337"
                     /db_xref="GOA:P96674"
                     /db_xref="InterPro:IPR003680"
                     /db_xref="InterPro:IPR029039"
                     /db_xref="SubtiList:BG12144"
                     /db_xref="UniProtKB/Swiss-Prot:P96674"
                     /translation="MDHMKTLVLVVHPNIESSRINKKWKEAVLSEPDVTVHDLYEKYR
                     DQPIDVEFEQQQLLAHDRIVFQFPLYWYSSPPLLKQWFDEVFTFGWAHGPGGNKLKGK
                     EWVTAMSIGSPEHSYQAGGYNLFSISELTKPFQASAHLVGMTYLPSFAEYRANTISDQ
                     EIAESANRYVKHITNIELNPKVRLQRYLKQLESVDLT*"
     gene            558177..558770
                     /gene="ydeQ"
                     /locus_tag="BSU_05300"
                     /old_locus_tag="BSU05300"
     CDS             complement(558914..560101)
                     /gene="ydeR"
                     /locus_tag="BSU_05310"
                     /old_locus_tag="BSU05310"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388412.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05310"
                     /db_xref="EnsemblGenomes-Tr:CAB12338"
                     /db_xref="GOA:P96675"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12145"
                     /db_xref="UniProtKB/Swiss-Prot:P96675"
                     /translation="MANGNKQAGQRISPSLTLLLATACGIIVANLYYAQPLVGLISKA
                     IGLSPSGAGLIVTLTQIGYVAGLLFLVPLGDIIENKKLIVVSLLLSAAALTLTAFVKH
                     GTLFLAAAFFVGLGSIAAQVLVPFASYLASDAARGRVVGNVMSGLLLGIMLSRPISSL
                     VADIWGWNAIFALSAVVSVILAIVLSKVLPARKPTANTNYTALLGSMWKLLRTTPVLR
                     RRAIYHAFVFGAFSLFWTTVPLLLSGPDFHFSQKAIALYALVGIAGAVTAPIGGRLAD
                     RGLTRLATGIALGVVVVSLLLPLMIQSSSPVGITVLVAAAILLDMGVSANLVLSQRAI
                     FSLAPEIRSRLNGLFMAIFFLGGAIGSSIGGWAYASGGWSTALWIGIAFPVIALLYFI
                     TEK*"
     gene            complement(558914..560101)
                     /gene="ydeR"
                     /locus_tag="BSU_05310"
                     /old_locus_tag="BSU05310"
     promotor_-35    560237..560241
                     /Source="Nicolas_upshift_promotors"
                     /id="U411"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.999000999001"
                     /xcortree=2381
                     /SigmaFactorBS="aaaaataatatactaaacgttcagttttgtaaatggatttct
                     GTTTTctttttttattcaaTTTAAGTATACTGAACGTATagtttatattgcgggaagg
                     a"
                     /listShort="ydeS, ydzO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        560255
                     /Source="Nicolas_upshifts"
                     /id="U411"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.999000999001"
                     /xcortree=2381
                     /SigmaFactorBS="aaaaataatatactaaacgttcagttttgtaaatggatttct
                     GTTTTctttttttattcaaTTTAAGTATACTGAACGTATagtttatattgcgggaagg
                     a"
                     /listShort="ydeS, ydzO"
                     /GFF_Attribute="listLong"
     promotor_-10    560256..560275
                     /Source="Nicolas_upshift_promotors"
                     /id="U411"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.999000999001"
                     /xcortree=2381
                     /SigmaFactorBS="aaaaataatatactaaacgttcagttttgtaaatggatttct
                     GTTTTctttttttattcaaTTTAAGTATACTGAACGTATagtttatattgcgggaagg
                     a"
                     /listShort="ydeS, ydzO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             560305..560901
                     /gene="ydeS"
                     /locus_tag="BSU_05320"
                     /old_locus_tag="BSU05320"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15944459; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (TetR/AcrR
                     family)"
                     /protein_id="NP_388413.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05320"
                     /db_xref="EnsemblGenomes-Tr:CAB12339"
                     /db_xref="GOA:P96676"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR011075"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG12146"
                     /db_xref="UniProtKB/Swiss-Prot:P96676"
                     /translation="MQSKRGRPRDEGTHKAILSAAYDLLLEKGFDAVTVDKIAERAKV
                     SKATIYKWWSNKAAVIMDSFLSTATDRLPVPDTGSSVQDIVTHATNLARFLTSREGTV
                     IKELIGAGQLDEKLAEEYRTRFFQPRRLQAKGLLEKGIQKGELRENLDIEVSIDLIYG
                     PIFYRLLITGDEVNDSYVRDLVMNAFKGVQATSATESM*"
     gene            560305..560901
                     /gene="ydeS"
                     /locus_tag="BSU_05320"
                     /old_locus_tag="BSU05320"
     CDS             561015..561200
                     /gene="ydzO"
                     /locus_tag="BSU_05329"
                     /old_locus_tag="BSU05329"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097684.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05329"
                     /db_xref="EnsemblGenomes-Tr:CAX52555"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3V9"
                     /translation="MSKKKSFNREYITSYYYIPFHRLEQGFYTSMEYRKVGVFKQQGK
                     IDGHYVGVMAMEKILAM*"
     gene            561015..561200
                     /gene="ydzO"
                     /locus_tag="BSU_05329"
                     /old_locus_tag="BSU05329"
     downshifts      561179
                     /Source="Nicolas_upshifts"
                     /id="D254"
                     /incds=0
                     /nref=5
                     /ntot=123
                     /MaxReadThrough="1.06987"
                     /MaxDrop="2.89833"
                     /score="-5.04743481"
                     /energy="-6.3"
                     /TU="NA"
                     /idTUdmin="U411"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    561312..561315
                     /Source="Nicolas_upshift_promotors"
                     /id="U412"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.99000999000999"
                     /xcortree=2480
                     /SigmaFactorBS="tctatgaccactcccataactgaaatagtctaatatttatac
                     cagaagggATTGtttatataaataaaAGTTTATATAATGACGGGGGcgctaaggaaac
                     g"
                     /listShort="S186, aseR, ydfA, ydzS, ydzS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       561322..561508
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_579354_579540"
                     /HighExp="LBGstat, G180, LBGexp, G135, Paraq, G150, Oxctl,
                     dia0, Diami, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S186"
     upshifts        561322
                     /Source="Nicolas_upshifts"
                     /id="U412"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.99000999000999"
                     /xcortree=2480
                     /SigmaFactorBS="tctatgaccactcccataactgaaatagtctaatatttatac
                     cagaagggATTGtttatataaataaaAGTTTATATAATGACGGGGGcgctaaggaaac
                     g"
                     /listShort="S186, aseR, ydfA, ydzS, ydzS"
                     /GFF_Attribute="listLong"
     promotor_-10    561330..561349
                     /Source="Nicolas_upshift_promotors"
                     /id="U412"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.99000999000999"
                     /xcortree=2480
                     /SigmaFactorBS="tctatgaccactcccataactgaaatagtctaatatttatac
                     cagaagggATTGtttatataaataaaAGTTTATATAATGACGGGGGcgctaaggaaac
                     g"
                     /listShort="S186, aseR, ydfA, ydzS, ydzS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             561509..561844
                     /gene="aseR"
                     /locus_tag="BSU_05330"
                     /old_locus_tag="BSU05330"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:15948947, 16430705"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15948947, 16430705;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (metals sensing
                     ArsR-SmtB repressors family)"
                     /protein_id="NP_388414.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05330"
                     /db_xref="EnsemblGenomes-Tr:CAB12340"
                     /db_xref="GOA:P96677"
                     /db_xref="InterPro:IPR001845"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12147"
                     /db_xref="UniProtKB/Swiss-Prot:P96677"
                     /translation="MTIDVAAMTRCLKTLSDQTRLIMMRLFLEQEYCVCQLVDMFEMS
                     QPAISQHLRKLKNAGFVNEDRRGQWRYYSINGSCPEFDTLQLILHQIDQEDELLNHIK
                     QKKTQACCQ*"
     gene            561509..561844
                     /gene="aseR"
                     /locus_tag="BSU_05330"
                     /old_locus_tag="BSU05330"
     CDS             561857..563164
                     /gene="arsF"
                     /locus_tag="BSU_05340"
                     /old_locus_tag="BSU05340"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12950922, 14970228,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite/antimonite/H+ antiporter"
                     /protein_id="NP_388415.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05340"
                     /db_xref="EnsemblGenomes-Tr:CAB12341"
                     /db_xref="GOA:P96678"
                     /db_xref="InterPro:IPR000802"
                     /db_xref="SubtiList:BG12148"
                     /db_xref="UniProtKB/Swiss-Prot:P96678"
                     /translation="MTSMILAVFIFLLTLVLVIWQPKNLSIGWSACGGAVLALIAGVV
                     NFHDVLTVTGIVWNATLAFVAIILISLILDNIGFFEWAALHMAKAAKGYGVRMFVYVS
                     LLGAIVAALFANDGAALILTPIVLAMVRALHFNEKLVFPFIIASGFIADTTSLPFVVS
                     NLVNIVSADYFHITFIDYASRMVVPYLFSLLASIIVLYLFFRKSIPKRYDLTEVKKPV
                     EAIKDQNMFRLSWYILGLLLIGYFASEFFSIPVSVVAGSIAIIFLIAAQKSPAVHTKK
                     VVKEAPWAIVFFSIGMYVVVYGVRNAGLTDVLSDVIQAAADQGLFAGTIGMGFIAAIL
                     SSIMNNLPTVMIDALAIAGTDTHGMMREALIYANVIGSDLGPKITPIGSLATLLWLHV
                     LSHKGMKISWGTYFKTGIILTIPTLLITLVGLYIWLLIIHSCF*"
     gene            561857..563164
                     /gene="arsF"
                     /locus_tag="BSU_05340"
                     /old_locus_tag="BSU05340"
     CDS             563196..563300
                     /gene="ydzSn"
                     /locus_tag="BSU_05343"
                     /old_locus_tag="BSU05343"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; N-terminal part
                     of ydzS"
                     /translation="CTGNSCRSQMAEGWGRKYLGAKWNVYSAGIEAQG*"
     gene            563196..563300
                     /gene="ydzSn"
                     /locus_tag="BSU_05343"
                     /old_locus_tag="BSU05343"
                     /pseudo
     CDS             563309..563422
                     /gene="ydzSc"
                     /locus_tag="BSU_05344"
                     /old_locus_tag="BSU05344"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; C-terminal part
                     of ydzS"
                     /translation="AVKAMKEAGIDISNQTSEKFDDPAKAHGTEEVFPKGP*"
     gene            563309..563422
                     /gene="ydzSc"
                     /locus_tag="BSU_05344"
                     /old_locus_tag="BSU05344"
                     /pseudo
     promotor_-35    563608..563616
                     /Source="Nicolas_upshift_promotors"
                     /id="U413"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=429
                     /SigmaFactorBS="cagggaagttatttagctggtgacAGAGGAAAAttgatttgt
                     gAACAGAATCATGAAGGAGAcggtgttttaaaggagttgtctgttttgcaggaattaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    563627..563645
                     /Source="Nicolas_upshift_promotors"
                     /id="U413"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=429
                     /SigmaFactorBS="cagggaagttatttagctggtgacAGAGGAAAAttgatttgt
                     gAACAGAATCATGAAGGAGAcggtgttttaaaggagttgtctgttttgcaggaattaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        563644
                     /Source="Nicolas_upshifts"
                     /id="U413"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.987012987012987"
                     /psig="0.987012987012987"
                     /xcortree=429
                     /SigmaFactorBS="cagggaagttatttagctggtgacAGAGGAAAAttgatttgt
                     gAACAGAATCATGAAGGAGAcggtgttttaaaggagttgtctgttttgcaggaattaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             563662..564447
                     /gene="ydfB"
                     /locus_tag="BSU_05350"
                     /old_locus_tag="BSU05350"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12793527; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_388416.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05350"
                     /db_xref="EnsemblGenomes-Tr:CAB12342"
                     /db_xref="GOA:P96679"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="InterPro:IPR027365"
                     /db_xref="SubtiList:BG12149"
                     /db_xref="UniProtKB/Swiss-Prot:P96679"
                     /translation="MSVLQELTKKKYSSLKTMFDDKYCPTFVYSILDQTIPGAVYADD
                     QTFPKSFFIGTESGIYFIAGDQGNRDFHDFIAGYYEEQVKSSKRFTLFSSSDTWDSVL
                     KPILKDDLNQMRRAAFSYQPKSFKKTLQLPKGLVLKRIDEDIISHSTAFNSAYYEEYW
                     NSVSQFASKGFGFAVLHGNHVVSECTSIFLGHNRAEMDIYTLEEYRGLGLAYCVANRF
                     IAFCMENGIVPSWDCDICNNSSIALAAKLGFKTVTEYTIYYSG*"
     gene            563662..564447
                     /gene="ydfB"
                     /locus_tag="BSU_05350"
                     /old_locus_tag="BSU05350"
     downshifts      563709
                     /Source="Nicolas_upshifts"
                     /id="D255"
                     /incds=0
                     /nref=3
                     /ntot=24
                     /MaxReadThrough="2.67554"
                     /MaxDrop="5.08398"
                     /score="39.1565399"
                     /energy="-19.2"
                     /TU="NA"
                     /idTUdmin="U413"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      564457
                     /Source="Nicolas_upshifts"
                     /id="D256"
                     /incds=0
                     /nref=2
                     /ntot=90
                     /MaxReadThrough="0.161840000000001"
                     /MaxDrop="3.51451"
                     /score="-0.169292431"
                     /energy="-13.6"
                     /TU="NA"
                     /idTUdmin="U413"
                     /TUdmin=748
                     /isTUend="FALSE"
     CDS             complement(564504..565424)
                     /gene="ydfC"
                     /locus_tag="BSU_05360"
                     /old_locus_tag="BSU05360"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid exporter"
                     /protein_id="NP_388417.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05360"
                     /db_xref="EnsemblGenomes-Tr:CAB12343"
                     /db_xref="GOA:P96680"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12150"
                     /db_xref="UniProtKB/Swiss-Prot:P96680"
                     /translation="MRKKTVQIMISHSLMIGLWASAFPGIRAGLEGYTPEHLALFRLL
                     IGSMALLLFAVLTQMRLPDLKDIPAIFLLGFLGFAFYHILLNIGEKTVSAGVASLLVT
                     TAPIFSAMLSRLFYKEHFGFTKWLGSMISLLGVLLIAFGAGDFTYSMSGILVILLAAF
                     SESIYFVFQARYIKKYGFIPFVTFTIWGGTIPMLVFLPGLGEEMMNASISATLSIVYL
                     GLLPTVIPYFALAYVTSFVGASEATLSLYVTPALALIISWLWIGEIPTLLSLLGGVVT
                     VGGVCFTYLKVNKMNKIFITHFSAKRVKKL*"
     gene            complement(564504..565424)
                     /gene="ydfC"
                     /locus_tag="BSU_05360"
                     /old_locus_tag="BSU05360"
     CDS             565557..567005
                     /gene="ydfD"
                     /locus_tag="BSU_05370"
                     /old_locus_tag="BSU05370"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 28348215;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388418.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05370"
                     /db_xref="EnsemblGenomes-Tr:CAB12344"
                     /db_xref="GOA:P96681"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12151"
                     /db_xref="UniProtKB/Swiss-Prot:P96681"
                     /translation="MSFPEEKKMKKLPKYRQIVHFIKEKIGNGEWPIGSKIPSQRTLA
                     KDFQVNRSTVITALEELMADGLIEGTMGKGTVVINNTWTLMAKNSAPDWDQYVTSGIQ
                     MPSRKIVQEINQSESNTDLIQLSKGELSAEIFPLAVMKEMMGKVSQHMEAFGYEEPKG
                     YLPLREALSNYLKTIGINVSSSSILIVSGALQALQLISMGLLQRGSTVYLDQPSYLYS
                     LHVFQSAGMKLTGLPMDNEGLLPENVHLTRGERGRAILYTNPCFHNPTGILMSKKRRE
                     EILAVSENTQLPIIEDDIYRELWIDEIPPYPIKTIDKNGHVLYIGSLSKTLSPGLRIG
                     WIVGPEPVIERLSDIKMQTDYGSSSLSQRVAAEWFTSGHYQQHVEKVRQQLKVRRELA
                     LSALETHLKEVATWNIPKGGFFVWIKILPSISMKLLYTKALSKGILINLGSIYAQEKG
                     NYIRLSYAYASLEDLQKGIYELGLMIKELASR*"
     gene            565557..567005
                     /gene="ydfD"
                     /locus_tag="BSU_05370"
                     /old_locus_tag="BSU05370"
     CDS             complement(567123..567746)
                     /gene="ydfE"
                     /locus_tag="BSU_05380"
                     /old_locus_tag="BSU05380"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative flavoprotein"
                     /protein_id="NP_388419.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05380"
                     /db_xref="EnsemblGenomes-Tr:CAB12345"
                     /db_xref="GOA:P96682"
                     /db_xref="InterPro:IPR002563"
                     /db_xref="InterPro:IPR012349"
                     /db_xref="SubtiList:BG12152"
                     /db_xref="UniProtKB/Swiss-Prot:P96682"
                     /translation="MDIKKQDTRRFKEIKPKIMYYGTSTFLLTTLNEDGTTNISPMSS
                     SWALGHYIILGVGLGGKAIDNLERHKECVINLPGPDLWENVERISSYSGKKSIPPLKK
                     QIGFTYKKEKYEAAGLTPLQSKTVSPTRIKECPIQIEAEVKHIRLPEYESSFAIVETQ
                     ALHFHAEESIILDENHINPSKWSPLIYNFRHYFGLGREVGKTFRSET*"
     gene            complement(567123..567746)
                     /gene="ydfE"
                     /locus_tag="BSU_05380"
                     /old_locus_tag="BSU05380"
     promotor_-10    complement(567770..567789)
                     /Source="Nicolas_upshift_promotors"
                     /id="U414"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.398601398601399"
                     /psig="0.999000999001"
                     /xcortree=2726
                     /SigmaFactorBS="atattaggattcatgattttcctccttacattcatatttCGA
                     TGATagttgaaatgttaaTCCTTTACAATATAAATGTAagcgtgacaaggaggaaaaa
                     a"
                     /listShort="ydfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    567778..567785
                     /Source="Nicolas_upshift_promotors"
                     /id="U415"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig=1
                     /xcortree=2389
                     /SigmaFactorBS="tccaacgttttttcctccttgtcacgcttacatttaTATTGT
                     AAaggattaacatttcAACTATCATCGAAATATGAAtgtaaggaggaaaatcatgaat
                     c"
                     /listShort="ydfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(567789)
                     /Source="Nicolas_upshifts"
                     /id="U414"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.398601398601399"
                     /psig="0.999000999001"
                     /xcortree=2726
                     /SigmaFactorBS="atattaggattcatgattttcctccttacattcatatttCGA
                     TGATagttgaaatgttaaTCCTTTACAATATAAATGTAagcgtgacaaggaggaaaaa
                     a"
                     /listShort="ydfE"
                     /GFF_Attribute="listLong"
     promotor_-10    567800..567819
                     /Source="Nicolas_upshift_promotors"
                     /id="U415"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig=1
                     /xcortree=2389
                     /SigmaFactorBS="tccaacgttttttcctccttgtcacgcttacatttaTATTGT
                     AAaggattaacatttcAACTATCATCGAAATATGAAtgtaaggaggaaaatcatgaat
                     c"
                     /listShort="ydfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        567802
                     /Source="Nicolas_upshifts"
                     /id="U415"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig=1
                     /xcortree=2389
                     /SigmaFactorBS="tccaacgttttttcctccttgtcacgcttacatttaTATTGT
                     AAaggattaacatttcAACTATCATCGAAATATGAAtgtaaggaggaaaatcatgaat
                     c"
                     /listShort="ydfF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(567804..567810)
                     /Source="Nicolas_upshift_promotors"
                     /id="U414"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.398601398601399"
                     /psig="0.999000999001"
                     /xcortree=2726
                     /SigmaFactorBS="atattaggattcatgattttcctccttacattcatatttCGA
                     TGATagttgaaatgttaaTCCTTTACAATATAAATGTAagcgtgacaaggaggaaaaa
                     a"
                     /listShort="ydfE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             567836..568516
                     /gene="ydfF"
                     /locus_tag="BSU_05390"
                     /old_locus_tag="BSU05390"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388420.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05390"
                     /db_xref="EnsemblGenomes-Tr:CAB12346"
                     /db_xref="GOA:P96683"
                     /db_xref="InterPro:IPR001845"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12153"
                     /db_xref="UniProtKB/Swiss-Prot:P96683"
                     /translation="MNPNIAKISSLLSDPSRSSILLSLMDGRIHPAGELAYLANIKPQ
                     TASFHLNKLLEAKLISVEKHGRHRYYRLADSDAANVIEQLLHIAPKAKVKSLKESKEK
                     KDLHFARTCYDHLAGYVGVQMAHSLVEQGMLKKVDLNFEVTSEGALFFSKLGINEEQQ
                     RNKRRAFARCCLDWSERQHHIAGALGNALLVRMLEEEWIVRMPKTRAIRITQSGKIAF
                     EKHLNVKI*"
     gene            567836..568516
                     /gene="ydfF"
                     /locus_tag="BSU_05390"
                     /old_locus_tag="BSU05390"
     downshifts      568549
                     /Source="Nicolas_upshifts"
                     /id="D257"
                     /incds=0
                     /nref=113
                     /ntot=245
                     /MaxReadThrough="0.50202"
                     /MaxDrop="4.24716"
                     /score="-7.74889591"
                     /energy="-4.5"
                     /TU="U415"
                     /idTUdmin="U415"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     CDS             complement(568596..569039)
                     /gene="ydfG"
                     /locus_tag="BSU_05400"
                     /old_locus_tag="BSU05400"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388421.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05400"
                     /db_xref="EnsemblGenomes-Tr:CAB12347"
                     /db_xref="GOA:P96684"
                     /db_xref="InterPro:IPR003779"
                     /db_xref="InterPro:IPR004675"
                     /db_xref="InterPro:IPR029032"
                     /db_xref="SubtiList:BG12154"
                     /db_xref="UniProtKB/Swiss-Prot:P96684"
                     /translation="MSQRVSYYEIAPEGMKIMMDMEKYTKQSSINRTTRELIKIRVSQ
                     MNGCAFCIDMHTSDARKMGETEQRIYCLHAWNECDFYSPEEKAALELSEHITLIPSKR
                     VPDELYHRVREHYDEEQYVDLVLIINQINSWNRISIAMGNRAASK*"
     gene            complement(568596..569039)
                     /gene="ydfG"
                     /locus_tag="BSU_05400"
                     /old_locus_tag="BSU05400"
     downshifts      complement(568601)
                     /Source="Nicolas_upshifts"
                     /id="D258"
                     /incds=0
                     /nref=10
                     /ntot=187
                     /MaxReadThrough="1.76648"
                     /MaxDrop="3.73786"
                     /score="0.225628164"
                     /energy="-10.8"
                     /TU="NA"
                     /idTUdmin="U416"
                     /TUdmin=2
                     /isTUend="TRUE"
     promotor_-10    complement(569062..569081)
                     /Source="Nicolas_upshift_promotors"
                     /id="U416"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=2022
                     /SigmaFactorBS="gcttctttccaaaagacgctgaaacagctgtcattcaaaccg
                     caCATTGGTAaaatgatcaatacCGGGATACAATCTAGGTATTctatggaaaggagtc
                     t"
                     /listShort="ydfG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(569086)
                     /Source="Nicolas_upshifts"
                     /id="U416"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=2022
                     /SigmaFactorBS="gcttctttccaaaagacgctgaaacagctgtcattcaaaccg
                     caCATTGGTAaaatgatcaatacCGGGATACAATCTAGGTATTctatggaaaggagtc
                     t"
                     /listShort="ydfG"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(569095..569102)
                     /Source="Nicolas_upshift_promotors"
                     /id="U416"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=2022
                     /SigmaFactorBS="gcttctttccaaaagacgctgaaacagctgtcattcaaaccg
                     caCATTGGTAaaatgatcaatacCGGGATACAATCTAGGTATTctatggaaaggagtc
                     t"
                     /listShort="ydfG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(569125..569304)
                     /gene="ydzP"
                     /locus_tag="BSU_05408"
                     /old_locus_tag="BSU05408"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097685.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05408"
                     /db_xref="EnsemblGenomes-Tr:CAX52558"
                     /db_xref="GOA:C0H3W0"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3W0"
                     /translation="MNMYWFLGALLYFLIGTYIFIRVTRDSQSGSWILLALAAPLIIA
                     GYPYFYSKKLLSKRR*"
     gene            complement(569125..569304)
                     /gene="ydzP"
                     /locus_tag="BSU_05408"
                     /old_locus_tag="BSU05408"
     CDS             complement(569301..569444)
                     /gene="ydzQ"
                     /locus_tag="BSU_05409"
                     /old_locus_tag="BSU05409"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097686.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05409"
                     /db_xref="EnsemblGenomes-Tr:CAX52559"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3W1"
                     /translation="MKSIDLTILSLKRKGIRTEKVLKNQNPDRLSHMTDKNAQPKSKE
                     KEE*"
     gene            complement(569301..569444)
                     /gene="ydzQ"
                     /locus_tag="BSU_05409"
                     /old_locus_tag="BSU05409"
     promotor_-35    569395..569397
                     /Source="Nicolas_upshift_promotors"
                     /id="U417"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.649350649350649"
                     /psig="0.998001998001998"
                     /xcortree=2487
                     /SigmaFactorBS="tctgattttttaataccttttcggtcCGGattccttttctct
                     ttAATGATAAAATTGTGAGATCaatcgatttcaatgatgatcattccttcaatgaata
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    569413..569432
                     /Source="Nicolas_upshift_promotors"
                     /id="U417"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.649350649350649"
                     /psig="0.998001998001998"
                     /xcortree=2487
                     /SigmaFactorBS="tctgattttttaataccttttcggtcCGGattccttttctct
                     ttAATGATAAAATTGTGAGATCaatcgatttcaatgatgatcattccttcaatgaata
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        569429
                     /Source="Nicolas_upshifts"
                     /id="U417"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.649350649350649"
                     /psig="0.998001998001998"
                     /xcortree=2487
                     /SigmaFactorBS="tctgattttttaataccttttcggtcCGGattccttttctct
                     ttAATGATAAAATTGTGAGATCaatcgatttcaatgatgatcattccttcaatgaata
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             569712..570935
                     /gene="ydfH"
                     /locus_tag="BSU_05410"
                     /old_locus_tag="BSU05410"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15941986"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15941986;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YdfI]"
                     /protein_id="NP_388422.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05410"
                     /db_xref="EnsemblGenomes-Tr:CAB12348"
                     /db_xref="GOA:P96685"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR011712"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12155"
                     /db_xref="UniProtKB/Swiss-Prot:P96685"
                     /translation="MLIRNPFKDKYYSHDRRALNMLALRVPGLAFILMIYIASIVLQF
                     VSGGWSILLLYAFTILIAIFALLHWHSYRWVKKRVILYFAVQGLITFALANLMTGFFI
                     LVIIGLYAFLIGQIIGMADRRRTFLILYLLLLLVINSAYHLHKGEVLHFIVIAAPIMI
                     VIITYAATFFAQVDEKIKAQLTLERLELAHQQVEQLTLQNERQRMARDLHDTLAQGLV
                     SLNMQLDAIHVHLAKGNTERAKEIIQQSMKRVKSTIADARSAIDDLRSKSEEIGVLKE
                     RITSLMDHFIESTGMACLLDYRLHQVLDVRTAENCYYIIGECMTNAAKHAEAKTIWIS
                     IWDDEKGRLHLTVKDNGKGFDVEKGKKKRGHYGLLGIQERVRAINGQFNIKSTKLKGT
                     QIEITVPIQGEMQDE*"
     gene            569712..570935
                     /gene="ydfH"
                     /locus_tag="BSU_05410"
                     /old_locus_tag="BSU05410"
     CDS             570928..571569
                     /gene="ydfI"
                     /locus_tag="BSU_05420"
                     /old_locus_tag="BSU05420"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 15941986"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 15941986;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YdfH]"
                     /protein_id="NP_388423.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05420"
                     /db_xref="EnsemblGenomes-Tr:CAB12349"
                     /db_xref="GOA:P96686"
                     /db_xref="InterPro:IPR000792"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12156"
                     /db_xref="UniProtKB/Swiss-Prot:P96686"
                     /translation="MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLAD
                     ELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIILTTYNEDHLMIEGIELGAKGYLL
                     KDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
                     AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN*"
     gene            570928..571569
                     /gene="ydfI"
                     /locus_tag="BSU_05420"
                     /old_locus_tag="BSU05420"
     downshifts      571563
                     /Source="Nicolas_upshifts"
                     /id="D259"
                     /incds=0
                     /nref=5
                     /ntot=147
                     /MaxReadThrough="1.15378"
                     /MaxDrop="2.65603"
                     /score="8.33575703"
                     /energy="-6.4"
                     /TU="NA"
                     /idTUdmin="U419"
                     /TUdmin="-176"
                     /isTUend="FALSE"
     promotor_-10    complement(571596..571615)
                     /Source="Nicolas_upshift_promotors"
                     /id="U418"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.796203796203796"
                     /psig="0.999000999001"
                     /xcortree=1843
                     /SigmaFactorBS="tcctttcaacacattgcttgatcacattctttctcattgtaG
                     TTGACAAtgaaatgaaaaaaACGTACATTCGGGCATGTACgtttgggcaattttcaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(571617)
                     /Source="Nicolas_upshifts"
                     /id="U418"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.796203796203796"
                     /psig="0.999000999001"
                     /xcortree=1843
                     /SigmaFactorBS="tcctttcaacacattgcttgatcacattctttctcattgtaG
                     TTGACAAtgaaatgaaaaaaACGTACATTCGGGCATGTACgtttgggcaattttcaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(571629..571636)
                     /Source="Nicolas_upshift_promotors"
                     /id="U418"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.796203796203796"
                     /psig="0.999000999001"
                     /xcortree=1843
                     /SigmaFactorBS="tcctttcaacacattgcttgatcacattctttctcattgtaG
                     TTGACAAtgaaatgaaaaaaACGTACATTCGGGCATGTACgtttgggcaattttcaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    571677..571682
                     /Source="Nicolas_upshift_promotors"
                     /id="U419"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.833166833166833"
                     /psig="0.833166833166833"
                     /xcortree=1016
                     /SigmaFactorBS="actacaatgagaaagaatgtgatcaagcaatgtgttgaaagg
                     AGATTAtcatgtcaaaaatgTTATATACATTAGGAGGATgggttgctcgcaatcgcat
                     a"
                     /listShort="ydfJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             571685..573859
                     /gene="ydfJ"
                     /locus_tag="BSU_05430"
                     /old_locus_tag="BSU05430"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15941986; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative proton metabolite efflux transporter"
                     /protein_id="NP_388424.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05430"
                     /db_xref="EnsemblGenomes-Tr:CAB12350"
                     /db_xref="GOA:P96687"
                     /db_xref="InterPro:IPR000731"
                     /db_xref="InterPro:IPR004869"
                     /db_xref="SubtiList:BG12157"
                     /db_xref="UniProtKB/Swiss-Prot:P96687"
                     /translation="MSKMLYTLGGWVARNRIKAICAWIVVLVAAIGLAVTLKPSFSED
                     MSIPDTPSEKAMDVIQKEFPHGPDKGSIRVIFGAGDGEKLTGKPAKKAIEDTFKEISK
                     DDSVDSIASPFVTGTIAKDGTVAYADIQYKSSADDIKDYSIKHLKDSLKMADDEGLQT
                     ELSGDVPGAEMEIGGVSEIVGIILAFVVLAITFGSLLIAGLPILTALIGLGVSIGLVL
                     IGTQVFDIASVSLSLAGMIGLAVGIDYALFIFTKHRQFLGEGIQKNESIARAVGTAGS
                     AVVFAGLTVIVALCGLTVVNIPFMSAMGLTAGLSVLMAVLASITLVPAVLSIAGKRMI
                     PKSNKKIEKQSTETNVWGRFVTKNPIMLSVCSILILIVISIPSMHLELGLPDAGMKAK
                     DNPDRRAYDLLAEGFGEGFNGQLTIVADATNATENKAEAFADAVKEIKGLDHVASVTP
                     AMPNKEGNFAIITVVPETGPNDVTTKDLVHDVRSLSDKNGVDLLVTGSTAVNIDISDR
                     LNDAIPVFAVLIVGFAFVLLTIVFRSLLVPLVAVAGFMLTMTATLGICVFVLQDGNLI
                     DFFKIPEKGPILAFLPILSIGILFGLAMDYQVFLVSRMREEYVKTNNPVQAIQAGLKH
                     SGPVVTAAGLIMIFVFAGFIFAGEASIKANGLALSFGVLFDAFIVRMTLIPSVMKLMG
                     NAAWYLPKWLDKIIPNVDIEGHQLTKEIQPEIDHEQKKQISV*"
     gene            571685..573859
                     /gene="ydfJ"
                     /locus_tag="BSU_05430"
                     /old_locus_tag="BSU05430"
     upshifts        571695
                     /Source="Nicolas_upshifts"
                     /id="U419"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.833166833166833"
                     /psig="0.833166833166833"
                     /xcortree=1016
                     /SigmaFactorBS="actacaatgagaaagaatgtgatcaagcaatgtgttgaaagg
                     AGATTAtcatgtcaaaaatgTTATATACATTAGGAGGATgggttgctcgcaatcgcat
                     a"
                     /listShort="ydfJ"
                     /GFF_Attribute="listLong"
     promotor_-10    571697..571715
                     /Source="Nicolas_upshift_promotors"
                     /id="U419"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.833166833166833"
                     /psig="0.833166833166833"
                     /xcortree=1016
                     /SigmaFactorBS="actacaatgagaaagaatgtgatcaagcaatgtgttgaaagg
                     AGATTAtcatgtcaaaaatgTTATATACATTAGGAGGATgggttgctcgcaatcgcat
                     a"
                     /listShort="ydfJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_feature    complement(572761..572779)
                     /Source="Nicolas_upshift_promotors"
                     /id="U420"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.763236763236763"
                     /psig="0.763236763236763"
                     /xcortree=1205
                     /SigmaFactorBS="atgcatagatgggatactaatgacgatcaaaatcagaatgct
                     GCATACACTTAGCATGATAggatttttggtgacaaagcgtccccagacatttgtttca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(572761)
                     /Source="Nicolas_upshifts"
                     /id="U420"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.763236763236763"
                     /psig="0.763236763236763"
                     /xcortree=1205
                     /SigmaFactorBS="atgcatagatgggatactaatgacgatcaaaatcagaatgct
                     GCATACACTTAGCATGATAggatttttggtgacaaagcgtccccagacatttgtttca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     S_feature       complement(573863..574270)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_591895_592302_c"
                     /HighExp="Paraq, H2O2, Oxctl, aero, LBGexp, dia15, GM 150,
                     M/G, ferm, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S187"
     promotor_-35    573880..573884
                     /Source="Nicolas_upshift_promotors"
                     /id="U421"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=3115
                     /SigmaFactorBS="aacaaaagaaacaaatcagtgtgtaatagaaaaagcagatct
                     tttaTGATCtgctcttttgctTATGGTAGTATTTAGAAGATgaagtcggcagttaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        573894
                     /Source="Nicolas_upshifts"
                     /id="U421"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=3115
                     /SigmaFactorBS="aacaaaagaaacaaatcagtgtgtaatagaaaaagcagatct
                     tttaTGATCtgctcttttgctTATGGTAGTATTTAGAAGATgaagtcggcagttaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    573897..573916
                     /Source="Nicolas_upshift_promotors"
                     /id="U421"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=3115
                     /SigmaFactorBS="aacaaaagaaacaaatcagtgtgtaatagaaaaagcagatct
                     tttaTGATCtgctcttttgctTATGGTAGTATTTAGAAGATgaagtcggcagttaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(573908)
                     /Source="Nicolas_upshifts"
                     /id="D260"
                     /incds=0
                     /nref=22
                     /ntot=134
                     /MaxReadThrough="-0.100210000000001"
                     /MaxDrop="3.637"
                     /score="4.29161871"
                     /energy="-8.8"
                     /TU="NA"
                     /idTUdmin="U422"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     CDS             complement(574271..575173)
                     /gene="cesA"
                     /locus_tag="BSU_05440"
                     /old_locus_tag="BSU05440"
                     /EC_number="3.1.1.1"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:7765103, 22248594, 24418394"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7765103, 22248594,
                     24418394; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase NP"
                     /protein_id="NP_388425.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05440"
                     /db_xref="EnsemblGenomes-Tr:CAB12351"
                     /db_xref="GOA:P96688"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="PDB:2R11"
                     /db_xref="SubtiList:BG11957"
                     /db_xref="UniProtKB/Swiss-Prot:P96688"
                     /translation="MSNHSSSIPELSDNGIRYYQTYNESLSLWPVRCKSFYISTRFGQ
                     THVIASGPEDAPPLVLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNKSIPENVS
                     GTRTDYANWLLDVFDNLGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFL
                     PFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNA
                     DGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVL
                     SMEQPTYVNERVMRFFNAETGISR*"
     gene            complement(574271..575173)
                     /gene="cesA"
                     /locus_tag="BSU_05440"
                     /old_locus_tag="BSU05440"
     S_feature       complement(575174..575269)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_593206_593301_c"
                     /HighExp="nit, ferm, aero, LoTm, M/G, GM 150, Diami,
                     Paraq, dia15, LBGexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S188"
     promotor_-10    complement(575249..575268)
                     /Source="Nicolas_upshift_promotors"
                     /id="U422"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=2448
                     /SigmaFactorBS="tcaataatctgtttcaatcgtttttttccttttcatcttgGA
                     TTTGACgtctaataacaacTGTATTATATTGTAAATAAAgtctgttatatcaaaatca
                     g"
                     /listShort="S188, nap, S187"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(575269)
                     /Source="Nicolas_upshifts"
                     /id="U422"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=2448
                     /SigmaFactorBS="tcaataatctgtttcaatcgtttttttccttttcatcttgGA
                     TTTGACgtctaataacaacTGTATTATATTGTAAATAAAgtctgttatatcaaaatca
                     g"
                     /listShort="S188, nap, S187"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(575282..575289)
                     /Source="Nicolas_upshift_promotors"
                     /id="U422"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=2448
                     /SigmaFactorBS="tcaataatctgtttcaatcgtttttttccttttcatcttgGA
                     TTTGACgtctaataacaacTGTATTATATTGTAAATAAAgtctgttatatcaaaatca
                     g"
                     /listShort="S188, nap, S187"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(575375..576064)
                     /gene="ydfK"
                     /locus_tag="BSU_05450"
                     /old_locus_tag="BSU05450"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10200972, 15849754,
                     16850406; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388426.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05450"
                     /db_xref="EnsemblGenomes-Tr:CAB12352"
                     /db_xref="GOA:P96689"
                     /db_xref="InterPro:IPR007563"
                     /db_xref="SubtiList:BG12158"
                     /db_xref="UniProtKB/Swiss-Prot:P96689"
                     /translation="MFGTIFNTVMIIAGSIIGGIFKKGIKDEYQDILMQAMGFAAVAL
                     GINAITQHLPDSKYPILFIVSLAIGGLLGQIINLELRFNKLVNKFSKSNLAEGLSTAV
                     LLFCIGSLSILGPVEAALHGDYTYLLTNGMLDGITSIVLASTFGFGIAAAALVLFSWQ
                     GSIYLFAQVMESAINTDLINEITIVGGILILSSGLSILGIKKFKTLNLLPSLLIPPVV
                     IFVIHAFGLRF*"
     gene            complement(575375..576064)
                     /gene="ydfK"
                     /locus_tag="BSU_05450"
                     /old_locus_tag="BSU05450"
     CDS             complement(576154..576966)
                     /gene="ydfL"
                     /locus_tag="BSU_05460"
                     /old_locus_tag="BSU05460"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator of efflux
                     transporter"
                     /protein_id="NP_388427.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05460"
                     /db_xref="EnsemblGenomes-Tr:CAB12353"
                     /db_xref="GOA:P96690"
                     /db_xref="InterPro:IPR000551"
                     /db_xref="InterPro:IPR009061"
                     /db_xref="InterPro:IPR010499"
                     /db_xref="InterPro:IPR011256"
                     /db_xref="InterPro:IPR029442"
                     /db_xref="SubtiList:BG12159"
                     /db_xref="UniProtKB/Swiss-Prot:P96690"
                     /translation="MKEFFSIGEVSKLFNVKISALRYYDEIGLLKPEYKDEQTNYRYY
                     STQQFERLDTIKYLRALGLPINKLLDFYNSQNTNTLLHLLKSQQVEIDRKKKELERIE
                     RKISRRITHIEDAVNMPLHQISKIKLPAMRVAYLQHEYVLGHDIEHSLAELRTHLNVN
                     EDIFIGKIGLSISAANVKAKQFDKYSSIFMILEDENEKTSSEIIFPSREYLQIRFKGS
                     HPEAEPYYKKLLAYMKEHHYEVAGDSIEITLIDYGITNNLDNYVTEILLPIK*"
     gene            complement(576154..576966)
                     /gene="ydfL"
                     /locus_tag="BSU_05460"
                     /old_locus_tag="BSU05460"
     promotor_-10    complement(576995..577014)
                     /Source="Nicolas_upshift_promotors"
                     /id="U423"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=1898
                     /SigmaFactorBS="tttttagaaggagttttttctttatgctgcaAACTTTACctt
                     tagtactcgccgTACTATATAATGTGTGTATAtcaatcataggacagaaaggttgtta
                     g"
                     /listShort="ydfL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(577008)
                     /Source="Nicolas_upshifts"
                     /id="U423"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=1898
                     /SigmaFactorBS="tttttagaaggagttttttctttatgctgcaAACTTTACctt
                     tagtactcgccgTACTATATAATGTGTGTATAtcaatcataggacagaaaggttgtta
                     g"
                     /listShort="ydfL"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(577030..577037)
                     /Source="Nicolas_upshift_promotors"
                     /id="U423"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=1898
                     /SigmaFactorBS="tttttagaaggagttttttctttatgctgcaAACTTTACctt
                     tagtactcgccgTACTATATAATGTGTGTATAtcaatcataggacagaaaggttgtta
                     g"
                     /listShort="ydfL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(577077..577970)
                     /gene="mneP"
                     /locus_tag="BSU_05470"
                     /old_locus_tag="BSU05470"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:27748968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 27748968; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="primary Mn(II) efflux pump"
                     /protein_id="NP_388428.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05470"
                     /db_xref="EnsemblGenomes-Tr:CAB12354"
                     /db_xref="GOA:C0SP78"
                     /db_xref="InterPro:IPR002524"
                     /db_xref="InterPro:IPR027469"
                     /db_xref="InterPro:IPR027470"
                     /db_xref="InterPro:IPR036837"
                     /db_xref="SubtiList:BG12160"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP78"
                     /translation="MASEREQISRKVALIALIANLILMAGKVFFGLVGDSEAVFADGI
                     HSAADVVASIAVLAVIGISNKPPDQDHPFGHGKAEVISEAIVGIILVIVSVYILIEAI
                     LSFVKGPSVPQYSALFAALISYVAKEILYRYSIKQGKKWNSKAIIAIAYDHKGDIVAS
                     LAAFIGVLLAIIGNSRGWSYLLYADAIASAIVAYLIFKISMELIRPSVDVLMEKSVDP
                     ELIEEYKAVIFQCDQVKRIDRIRAREHGHYKLLDVRLSLDHDLTIKQGHDIAREIRNE
                     IKRQFSDVEEVLIHVNPYFEE*"
     gene            complement(577077..577970)
                     /gene="mneP"
                     /locus_tag="BSU_05470"
                     /old_locus_tag="BSU05470"
     downshifts      complement(577097)
                     /Source="Nicolas_upshifts"
                     /id="D261"
                     /incds=0
                     /nref=23
                     /ntot=121
                     /MaxReadThrough="1.07979"
                     /MaxDrop="4.0938"
                     /score="12.079524"
                     /energy="-6.2"
                     /TU="NA"
                     /idTUdmin="U424"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     S_feature       complement(577971..578063)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_596003_596095_c"
                     /HighExp="LPh, HPh, LPhT, UNK1, MG t5, MG 5, MG 15, BMM,
                     GM 120, Fru"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S189"
     promotor_-10    complement(578044..578063)
                     /Source="Nicolas_upshift_promotors"
                     /id="U424"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=1748
                     /SigmaFactorBS="caccttatttattagtaaacaggaaacaacgttgcTATAGAC
                     CcactcgaaattgaatTGGTATGATAAACAAAGTGAttacacaggaaaggatacggag
                     a"
                     /listShort="S189, ydfM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(578061)
                     /Source="Nicolas_upshifts"
                     /id="U424"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=1748
                     /SigmaFactorBS="caccttatttattagtaaacaggaaacaacgttgcTATAGAC
                     CcactcgaaattgaatTGGTATGATAAACAAAGTGAttacacaggaaaggatacggag
                     a"
                     /listShort="S189, ydfM"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(578079..578086)
                     /Source="Nicolas_upshift_promotors"
                     /id="U424"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.756243756243756"
                     /psig=1
                     /xcortree=1748
                     /SigmaFactorBS="caccttatttattagtaaacaggaaacaacgttgcTATAGAC
                     CcactcgaaattgaatTGGTATGATAAACAAAGTGAttacacaggaaaggatacggag
                     a"
                     /listShort="S189, ydfM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    578252..578259
                     /Source="Nicolas_upshift_promotors"
                     /id="U425"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=3024
                     /SigmaFactorBS="agtgaaaaatttccacctaattttcaaaaaccTATTGACAtg
                     agaagatctgtaTTTTACTATTATCTCATATTcaagatattttaatttgagatatttg
                     g"
                     /listShort="ydfN, ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    578274..578293
                     /Source="Nicolas_upshift_promotors"
                     /id="U425"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=3024
                     /SigmaFactorBS="agtgaaaaatttccacctaattttcaaaaaccTATTGACAtg
                     agaagatctgtaTTTTACTATTATCTCATATTcaagatattttaatttgagatatttg
                     g"
                     /listShort="ydfN, ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        578280
                     /Source="Nicolas_upshifts"
                     /id="U425"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=3024
                     /SigmaFactorBS="agtgaaaaatttccacctaattttcaaaaaccTATTGACAtg
                     agaagatctgtaTTTTACTATTATCTCATATTcaagatattttaatttgagatatttg
                     g"
                     /listShort="ydfN, ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
     CDS             578446..579066
                     /gene="ydfN"
                     /locus_tag="BSU_05480"
                     /old_locus_tag="BSU05480"
                     /EC_number="1.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17407181; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388429.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05480"
                     /db_xref="EnsemblGenomes-Tr:CAB12355"
                     /db_xref="GOA:P96692"
                     /db_xref="InterPro:IPR000415"
                     /db_xref="InterPro:IPR029479"
                     /db_xref="PDB:3BEM"
                     /db_xref="SubtiList:BG12161"
                     /db_xref="UniProtKB/Swiss-Prot:P96692"
                     /translation="MAEFTHLVNERRSASNFLSGHPITKEDLNEMFELVALAPSAFNL
                     QHTKYVTVLDQDVKEKLKQAANGQYKVVSSSAVLLVLGDKQAYQQAADIYEGLKVLGI
                     LNKQEYDHMVQDTVSFYENRGEQFKRDEAIRNASLSAMMFMLSAKEKGWDTCPMIGFD
                     AEAVKRILNIDDQFEVVMMITIGKEKTESRRPRGYRKPVNEFVEYM*"
     gene            578446..579066
                     /gene="ydfN"
                     /locus_tag="BSU_05480"
                     /old_locus_tag="BSU05480"
     promotor_-35    578790..578796
                     /Source="Nicolas_upshift_promotors"
                     /id="U426"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=151
                     /SigmaFactorBS="tattggggatattaaataagcaagagtatgaccacatggtgc
                     aagacacCGTTTCGttttatgaaaacaGGGGAGAACAATTTAAGAGagatgaggcgat
                     a"
                     /listShort="ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        578801
                     /Source="Nicolas_upshifts"
                     /id="U426"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=151
                     /SigmaFactorBS="tattggggatattaaataagcaagagtatgaccacatggtgc
                     aagacacCGTTTCGttttatgaaaacaGGGGAGAACAATTTAAGAGagatgaggcgat
                     a"
                     /listShort="ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
     promotor_-10    578810..578828
                     /Source="Nicolas_upshift_promotors"
                     /id="U426"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=151
                     /SigmaFactorBS="tattggggatattaaataagcaagagtatgaccacatggtgc
                     aagacacCGTTTCGttttatgaaaacaGGGGAGAACAATTTAAGAGagatgaggcgat
                     a"
                     /listShort="ydfO, S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             579082..580020
                     /gene="ydfO"
                     /locus_tag="BSU_05490"
                     /old_locus_tag="BSU05490"
                     /EC_number="1.13.11.-"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17407181; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative dioxygenase"
                     /protein_id="NP_388430.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05490"
                     /db_xref="EnsemblGenomes-Tr:CAB12356"
                     /db_xref="GOA:P96693"
                     /db_xref="InterPro:IPR004360"
                     /db_xref="InterPro:IPR029068"
                     /db_xref="PDB:3OAJ"
                     /db_xref="SubtiList:BG12162"
                     /db_xref="UniProtKB/Swiss-Prot:P96693"
                     /translation="MAKKTMGIHHITAIVGHPQENTDFYAGVLGLRLVKQTVNFDDPG
                     TYHLYFGNEGGKPGTIITFFPWAGARQGVIGDGQVGVTSYVVPKGAMAFWEKRLEKFN
                     VPYTKIERFGEQYVEFDDPHGLHLEIVEREEGEANTWTFGEVTPDVAIKGFGGATLLS
                     EQPDKTADLLENIMGLERVGKEGDFVRYRSAGDIGNVIDLKLTPIGRGQMGAGTVHHI
                     AWRANDDEDQLDWQRYIASHGYGVTPVRDRNYFNAIYFREHGEILFEIATDPPGFAHD
                     ETQETMGEKLMLPVQYEPHRTQIEQGLLPFEVRELD*"
     gene            579082..580020
                     /gene="ydfO"
                     /locus_tag="BSU_05490"
                     /old_locus_tag="BSU05490"
     promotor_-35    580008..580011
                     /Source="Nicolas_upshift_promotors"
                     /id="U427"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.658341658341658"
                     /psig="0.658341658341658"
                     /xcortree=729
                     /SigmaFactorBS="caaattgaacaagggctgctgccgtttgaagtaagAGAGtta
                     gattgatttgaCACATAAAAAATAAAGAAACatatattcaattgatgattgctggatg
                     g"
                     /listShort="S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    580026..580045
                     /Source="Nicolas_upshift_promotors"
                     /id="U427"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.658341658341658"
                     /psig="0.658341658341658"
                     /xcortree=729
                     /SigmaFactorBS="caaattgaacaagggctgctgccgtttgaagtaagAGAGtta
                     gattgatttgaCACATAAAAAATAAAGAAACatatattcaattgatgattgctggatg
                     g"
                     /listShort="S190, ydfP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       580033..580121
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_598065_598153"
                     /HighExp="Etha, BT, S6, S7, S8, G/S, GM 10, Gly, GM 15,
                     B36"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigB, SigA"
                     /TUshortPSig="0.658, 0.993, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S190"
     upshifts        580033
                     /Source="Nicolas_upshifts"
                     /id="U427"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.658341658341658"
                     /psig="0.658341658341658"
                     /xcortree=729
                     /SigmaFactorBS="caaattgaacaagggctgctgccgtttgaagtaagAGAGtta
                     gattgatttgaCACATAAAAAATAAAGAAACatatattcaattgatgattgctggatg
                     g"
                     /listShort="S190, ydfP"
                     /GFF_Attribute="listLong"
     CDS             580122..580511
                     /gene="ydfP"
                     /locus_tag="BSU_05500"
                     /old_locus_tag="BSU05500"
                     /EC_number="1.-.-.-"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15306018, 15849754,
                     16850406, 17407181; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane bound oxidoreductase"
                     /protein_id="NP_388431.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05500"
                     /db_xref="EnsemblGenomes-Tr:CAB12357"
                     /db_xref="GOA:P96694"
                     /db_xref="InterPro:IPR032808"
                     /db_xref="SubtiList:BG12163"
                     /db_xref="UniProtKB/Swiss-Prot:P96694"
                     /translation="MEDAGLLLIRIMIGVVFLFYGTQKLFGWFGGYGIKGTGQWFESI
                     GVKPGNVAAALSGLGELVSGILFILGVFLPLGAAIITIIMLGAIVKVHGAKGFANGAG
                     GFEYNLVLIAVSIGVALIGSGAYALHF*"
     gene            580122..580511
                     /gene="ydfP"
                     /locus_tag="BSU_05500"
                     /old_locus_tag="BSU05500"
     downshifts      580502
                     /Source="Nicolas_upshifts"
                     /id="D262"
                     /incds=0
                     /nref=3
                     /ntot=91
                     /MaxReadThrough="1.0642"
                     /MaxDrop="3.85597"
                     /score="-8.69038499"
                     /energy="-9.3"
                     /TU="NA"
                     /idTUdmin="U427"
                     /TUdmin=29
                     /isTUend="FALSE"
     misc_feature    580625..580644
                     /Source="Nicolas_upshift_promotors"
                     /id="U428"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.665334665334665"
                     /psig="0.946053946053946"
                     /xcortree=2048
                     /SigmaFactorBS="cattttcggcaagcttgcaggtactctgcaaagcaaaaaagc
                     ggatatcataaatataAATCTGTATAGTGAATGATAcgtattgatgagcttggtcatg
                     a"
                     /listShort="S191, ydfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       580627..580696
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_598659_598728"
                     /HighExp="Diami, dia5, H2O2, dia15, Etha, S8, Paraq, Salt,
                     LPhT, G180"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.946"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S191"
     upshifts        580627
                     /Source="Nicolas_upshifts"
                     /id="U428"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.665334665334665"
                     /psig="0.946053946053946"
                     /xcortree=2048
                     /SigmaFactorBS="cattttcggcaagcttgcaggtactctgcaaagcaaaaaagc
                     ggatatcataaatataAATCTGTATAGTGAATGATAcgtattgatgagcttggtcatg
                     a"
                     /listShort="S191, ydfQ"
                     /GFF_Attribute="listLong"
     CDS             580697..581035
                     /gene="ydfQ"
                     /locus_tag="BSU_05510"
                     /old_locus_tag="BSU05510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15937154; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative thioredoxin or thiol-disulfide
                     isomerase"
                     /protein_id="NP_388432.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05510"
                     /db_xref="EnsemblGenomes-Tr:CAB12358"
                     /db_xref="GOA:P96695"
                     /db_xref="InterPro:IPR013766"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="SubtiList:BG12164"
                     /db_xref="UniProtKB/Swiss-Prot:P96695"
                     /translation="MKEMTGLHSLVSIENFIKQHKFSFIYISRPGCTVCHAVLPQLRI
                     VLDQFPNIKLGHINADDVAEVAGRFSVFTVPVLLLFIDGTEFLREARFVHFEQLEQKL
                     KRVYRLYEGE*"
     gene            580697..581035
                     /gene="ydfQ"
                     /locus_tag="BSU_05510"
                     /old_locus_tag="BSU05510"
     downshifts      581023
                     /Source="Nicolas_upshifts"
                     /id="D263"
                     /incds=0
                     /nref=9
                     /ntot=28
                     /MaxReadThrough="1.76745"
                     /MaxDrop="4.78737"
                     /score="17.861178"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U428"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(581075..581311)
                     /gene="ydzH"
                     /locus_tag="BSU_05520"
                     /old_locus_tag="BSU05520"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein,
                     sporulation-related"
                     /protein_id="NP_388433.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05520"
                     /db_xref="EnsemblGenomes-Tr:CAB12359"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG12810"
                     /db_xref="UniProtKB/Swiss-Prot:O31496"
                     /translation="MRSQINISNLTINGMTQNANTDIGQNLQNSHTANSKNYGVNFTL
                     GDYSPSHSIIISASCDNDTSDQGQVDNPSSPSEE*"
     gene            complement(581075..581311)
                     /gene="ydzH"
                     /locus_tag="BSU_05520"
                     /old_locus_tag="BSU05520"
     downshifts      complement(581099)
                     /Source="Nicolas_upshifts"
                     /id="D264"
                     /incds=0
                     /nref=1
                     /ntot=10
                     /MaxReadThrough="3.87679"
                     /MaxDrop="2.5881"
                     /score="9.38580075"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U430"
                     /TUdmin=418
                     /isTUend="FALSE"
     promotor_-35    581123..581129
                     /Source="Nicolas_upshift_promotors"
                     /id="U429"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.722277722277722"
                     /psig="0.722277722277722"
                     /xcortree=1208
                     /SigmaFactorBS="aagggttatcaacctgcccttgatcactTGTATCAttatcac
                     aacttgcTGAAATAATAATtgaatgagaaggagagtaatctcctaatgtgaaattcac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    581144..581155
                     /Source="Nicolas_upshift_promotors"
                     /id="U429"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.722277722277722"
                     /psig="0.722277722277722"
                     /xcortree=1208
                     /SigmaFactorBS="aagggttatcaacctgcccttgatcactTGTATCAttatcac
                     aacttgcTGAAATAATAATtgaatgagaaggagagtaatctcctaatgtgaaattcac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        581155
                     /Source="Nicolas_upshifts"
                     /id="U429"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.722277722277722"
                     /psig="0.722277722277722"
                     /xcortree=1208
                     /SigmaFactorBS="aagggttatcaacctgcccttgatcactTGTATCAttatcac
                     aacttgcTGAAATAATAATtgaatgagaaggagagtaatctcctaatgtgaaattcac
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     S_feature       complement(581312..581473)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_599344_599505_c"
                     /HighExp="BT, B36, S8, S7, G135, S5, S6, G180, Pyr,
                     LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S192"
     S_feature       complement(581477..581842)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_599509_599874_c"
                     /HighExp="BT, B36, S8, S7, S6, G/S, S5, Pyr, B60, S4"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigGF, SigK"
                     /TUshortPSig="0.994, 0.989, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S193"
     downshifts      complement(581517)
                     /Source="Nicolas_upshifts"
                     /id="D265"
                     /incds=0
                     /nref=26
                     /ntot=52
                     /MaxReadThrough="2.64253"
                     /MaxDrop="4.6761"
                     /score="8.29803249"
                     /energy="-12.4"
                     /TU="NA"
                     /idTUdmin="U430"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(581843..582073)
                     /gene="ydzR"
                     /locus_tag="BSU_05529"
                     /old_locus_tag="BSU05529"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 19383706, 20709900"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein,
                     sporulation-related"
                     /protein_id="YP_003097687.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05529"
                     /db_xref="EnsemblGenomes-Tr:CAX52560"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3W2"
                     /translation="MMKFPVYIHSISGNSVFNNGFAVSISPFSVSKTTEGSGGSNTGL
                     VFESNALSQTSSANQAQNVTYAIQELLSKLLA*"
     gene            complement(581843..582073)
                     /gene="ydzR"
                     /locus_tag="BSU_05529"
                     /old_locus_tag="BSU05529"
     downshifts      582057
                     /Source="Nicolas_upshifts"
                     /id="D266"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="1.08051"
                     /MaxDrop="3.36374"
                     /score="17.861178"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U428"
                     /TUdmin=1034
                     /isTUend="FALSE"
     promotor_-10    complement(582094..582113)
                     /Source="Nicolas_upshift_promotors"
                     /id="U430"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1432
                     /SigmaFactorBS="ggtttttgtctcttactgaaagtttttgccgttttGTTTAAG
                     CAActgctgctcacacACCATATTGTATAAACAGTCataacagagaggagagatgaat
                     g"
                     /listShort="ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(582111)
                     /Source="Nicolas_upshifts"
                     /id="U430"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1432
                     /SigmaFactorBS="ggtttttgtctcttactgaaagtttttgccgttttGTTTAAG
                     CAActgctgctcacacACCATATTGTATAAACAGTCataacagagaggagagatgaat
                     g"
                     /listShort="ydzR, S193"
                     /GFF_Attribute="listLong"
     S_feature       complement(582113..582196)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_600145_600228_c"
                     /HighExp="S8, S5, S7, S6, S4, nit, ferm, BT, Pyr, G/S"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigK"
                     /TUshortPSig="0.989, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S194"
     promotor_-35    complement(582127..582136)
                     /Source="Nicolas_upshift_promotors"
                     /id="U430"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1432
                     /SigmaFactorBS="ggtttttgtctcttactgaaagtttttgccgttttGTTTAAG
                     CAActgctgctcacacACCATATTGTATAAACAGTCataacagagaggagagatgaat
                     g"
                     /listShort="ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(582197..582874)
                     /gene="ydfR"
                     /locus_tag="BSU_05530"
                     /old_locus_tag="BSU05530"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein of unknown function"
                     /protein_id="NP_388434.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05530"
                     /db_xref="EnsemblGenomes-Tr:CAB12360"
                     /db_xref="GOA:P96696"
                     /db_xref="InterPro:IPR007353"
                     /db_xref="InterPro:IPR023090"
                     /db_xref="SubtiList:BG12165"
                     /db_xref="UniProtKB/Swiss-Prot:P96696"
                     /translation="MNRLPFGYIKLRLAGRKANPMTNLIHHWSGGSMNFTWESLVLIV
                     AGVILLRISGRKSIAQMTSTQTVVMISIGTIIVQPIIEYSLFKTLIAAAIFTSTLIVM
                     EWIQMKSNTIEKMLTGKAKIVIENGQLHIENLKKMRLTADQLEMQLRLHGVTAIQDVK
                     IATLEANGQLGIELTDDAKPLTVRDLKKLIHPDFINKDGQAQSGNQNIFDEVGKKNKK
                     NVPKKLH*"
     gene            complement(582197..582874)
                     /gene="ydfR"
                     /locus_tag="BSU_05530"
                     /old_locus_tag="BSU05530"
     promotor_-10    complement(582845..582856)
                     /Source="Nicolas_upshift_promotors"
                     /id="U431"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=782
                     /SigmaFactorBS="taatatatccatctataccaaaaatattgttcggttcaggac
                     AGAATGAaccgactgcctttcGGATATATTAAAttgcgattggccggaagaaaagcca
                     a"
                     /listShort="ydfR, S194, ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(582859)
                     /Source="Nicolas_upshifts"
                     /id="U431"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=782
                     /SigmaFactorBS="taatatatccatctataccaaaaatattgttcggttcaggac
                     AGAATGAaccgactgcctttcGGATATATTAAAttgcgattggccggaagaaaagcca
                     a"
                     /listShort="ydfR, S194, ydzR, S193"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(582871..582877)
                     /Source="Nicolas_upshift_promotors"
                     /id="U431"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.98901098901099"
                     /psig="0.98901098901099"
                     /xcortree=782
                     /SigmaFactorBS="taatatatccatctataccaaaaatattgttcggttcaggac
                     AGAATGAaccgactgcctttcGGATATATTAAAttgcgattggccggaagaaaagcca
                     a"
                     /listShort="ydfR, S194, ydzR, S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(582875..583708)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_600907_601740_c"
                     /HighExp="S6, S8, S7, S5, BT, B36, G/S, Pyr, nit, B60"
                     /AntisenseName="ydfS"
                     /AntisenseCor="0.65823831974361602"
                     /AntisenseRegPval="-34.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S195"
     promotor_-35    582890..582895
                     /Source="Nicolas_upshift_promotors"
                     /id="U432"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.944055944055944"
                     /psig="0.944055944055944"
                     /xcortree=781
                     /SigmaFactorBS="ccgaaaggcagtcggttcattctgtcctgaaccgaACAATAt
                     ttttggtatagatGGATATATTAAGccaaacaatgatagcaacaggagttttttggcc
                     g"
                     /listShort="ydfS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    582910..582921
                     /Source="Nicolas_upshift_promotors"
                     /id="U432"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.944055944055944"
                     /psig="0.944055944055944"
                     /xcortree=781
                     /SigmaFactorBS="ccgaaaggcagtcggttcattctgtcctgaaccgaACAATAt
                     ttttggtatagatGGATATATTAAGccaaacaatgatagcaacaggagttttttggcc
                     g"
                     /listShort="ydfS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        582915
                     /Source="Nicolas_upshifts"
                     /id="U432"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.944055944055944"
                     /psig="0.944055944055944"
                     /xcortree=781
                     /SigmaFactorBS="ccgaaaggcagtcggttcattctgtcctgaaccgaACAATAt
                     ttttggtatagatGGATATATTAAGccaaacaatgatagcaacaggagttttttggcc
                     g"
                     /listShort="ydfS"
                     /GFF_Attribute="listLong"
     CDS             582987..583694
                     /gene="ydfS"
                     /locus_tag="BSU_05540"
                     /old_locus_tag="BSU05540"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388435.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05540"
                     /db_xref="EnsemblGenomes-Tr:CAB12361"
                     /db_xref="GOA:P96697"
                     /db_xref="InterPro:IPR007353"
                     /db_xref="InterPro:IPR023090"
                     /db_xref="SubtiList:BG12166"
                     /db_xref="UniProtKB/Swiss-Prot:P96697"
                     /translation="MIELEVVIRTVASFGLLLIAERILGKQTISQMTIFDFIAAITLG
                     AIAAGLAYNTSIKPHNMAISFSIFVLTIFLISFLSIKNRKLRKFFAGDPTVLIQNGKI
                     LESNMRKMRYTLDYLNQQLREKEIFNIEEVLFAILETNGQLTVLRKPQFRHVTKQDLM
                     IAVNQEQRLPIELIMDGEIIENNLKQNRLTESWLLEELRKRDIKVKETVYAVLLGNGD
                     IYVDQYKDHISVPMDKE*"
     gene            582987..583694
                     /gene="ydfS"
                     /locus_tag="BSU_05540"
                     /old_locus_tag="BSU05540"
     CDS             complement(583709..584140)
                     /gene="cotP"
                     /locus_tag="BSU_05550"
                     /old_locus_tag="BSU05550"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11150673"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11150673; Product type s:
                     structure"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein"
                     /protein_id="NP_388436.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05550"
                     /db_xref="EnsemblGenomes-Tr:CAB12362"
                     /db_xref="GOA:P96698"
                     /db_xref="InterPro:IPR002068"
                     /db_xref="InterPro:IPR008978"
                     /db_xref="InterPro:IPR031107"
                     /db_xref="SubtiList:BG12167"
                     /db_xref="UniProtKB/Swiss-Prot:P96698"
                     /translation="MDFEKIRKWLEITNEYKQSDFWTNVLKYKAPEHFFDSEASTFVY
                     DFYQDEEYNFIIVEMPGVYEEELTIRLLSKTQLLIKGTITPVFPAEMEVLRERYYGEI
                     ERIIQLPEAAETHLLQIQLLNGLLHISYPRQVETVAFNKGL*"
     gene            complement(583709..584140)
                     /gene="cotP"
                     /locus_tag="BSU_05550"
                     /old_locus_tag="BSU05550"
     CDS             complement(584153..584395)
                     /gene="ydgA"
                     /locus_tag="BSU_05560"
                     /old_locus_tag="BSU05560"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; putative
                     germination protein"
                     /protein_id="NP_388437.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05560"
                     /db_xref="EnsemblGenomes-Tr:CAB12363"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG12168"
                     /db_xref="UniProtKB/Swiss-Prot:P96699"
                     /translation="MPYQINIANIKINGVTQNGNIDVGPTVHNSHTANSKYFGANFSL
                     GDLSPTSSLLNTGNIDSDVSDQDQIGNPSAPISNQI*"
     gene            complement(584153..584395)
                     /gene="ydgA"
                     /locus_tag="BSU_05560"
                     /old_locus_tag="BSU05560"
     CDS             complement(584409..584681)
                     /gene="ydgB"
                     /locus_tag="BSU_05570"
                     /old_locus_tag="BSU05570"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; putative
                     germination protein"
                     /protein_id="NP_388438.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05570"
                     /db_xref="EnsemblGenomes-Tr:CAB12364"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG12169"
                     /db_xref="UniProtKB/Swiss-Prot:P96700"
                     /translation="MPSTVINLYYLKINSISGNGSITIGEAAYNSPTNNQKSQGTNSS
                     FGDTSPTESVMENFLNDPDVNDQTSIGNSDTSNVNAPPIAPPPILD*"
     gene            complement(584409..584681)
                     /gene="ydgB"
                     /locus_tag="BSU_05570"
                     /old_locus_tag="BSU05570"
     promotor_-10    complement(584703..584722)
                     /Source="Nicolas_upshift_promotors"
                     /id="U433"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1305
                     /SigmaFactorBS="gatagagttttgcccgtaaatgCAAGGAACAAttgggtgcag
                     cggCGCATAATGTACTGTACAGAaagatggaagggtgtgatgggatgccgtctacagt
                     a"
                     /listShort="ydgB, ydgA, cotP, S195, ydfR, S194, ydzR,
                     S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(584707)
                     /Source="Nicolas_upshifts"
                     /id="U433"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1305
                     /SigmaFactorBS="gatagagttttgcccgtaaatgCAAGGAACAAttgggtgcag
                     cggCGCATAATGTACTGTACAGAaagatggaagggtgtgatgggatgccgtctacagt
                     a"
                     /listShort="ydgB, ydgA, cotP, S195, ydfR, S194, ydzR,
                     S193"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(584736..584745)
                     /Source="Nicolas_upshift_promotors"
                     /id="U433"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1305
                     /SigmaFactorBS="gatagagttttgcccgtaaatgCAAGGAACAAttgggtgcag
                     cggCGCATAATGTACTGTACAGAaagatggaagggtgtgatgggatgccgtctacagt
                     a"
                     /listShort="ydgB, ydgA, cotP, S195, ydfR, S194, ydzR,
                     S193"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    584900..584907
                     /Source="Nicolas_upshift_promotors"
                     /id="U434"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig="0.997002997002997"
                     /xcortree=1917
                     /SigmaFactorBS="gaagctggcaaacaggatcagtttgaaatAATTGACAatgaa
                     gctaatgccaTGAAATAATACTCGTGAGTAacattactcgtgggtattatttttgggg
                     t"
                     /listShort="ydgC, ydgD, S196, ydgE, S197"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    584923..584942
                     /Source="Nicolas_upshift_promotors"
                     /id="U434"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig="0.997002997002997"
                     /xcortree=1917
                     /SigmaFactorBS="gaagctggcaaacaggatcagtttgaaatAATTGACAatgaa
                     gctaatgccaTGAAATAATACTCGTGAGTAacattactcgtgggtattatttttgggg
                     t"
                     /listShort="ydgC, ydgD, S196, ydgE, S197"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        584931
                     /Source="Nicolas_upshifts"
                     /id="U434"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig="0.997002997002997"
                     /xcortree=1917
                     /SigmaFactorBS="gaagctggcaaacaggatcagtttgaaatAATTGACAatgaa
                     gctaatgccaTGAAATAATACTCGTGAGTAacattactcgtgggtattatttttgggg
                     t"
                     /listShort="ydgC, ydgD, S196, ydgE, S197"
                     /GFF_Attribute="listLong"
     CDS             584980..585567
                     /gene="ydgC"
                     /locus_tag="BSU_05580"
                     /old_locus_tag="BSU05580"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388439.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05580"
                     /db_xref="EnsemblGenomes-Tr:CAB12365"
                     /db_xref="GOA:P96701"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG12170"
                     /db_xref="UniProtKB/Swiss-Prot:P96701"
                     /translation="MKSKGVESRKRLLKAAANEFSVRGFHDAKVSEIVKKAGFTQPSF
                     YLYFQSKEAIFAELITDFHSRVRKLTESLLLENGLNTEDVSKRVLLAVETVFQFLDED
                     KDLTKIGFFLNPEAKQMKKDLAMVLKENLEAEQRLGYFHSELDMETVAECLVGMIEHL
                     TESFLLTGIKDPASLAAEVVNLLIYGMLPKGNDVR*"
     gene            584980..585567
                     /gene="ydgC"
                     /locus_tag="BSU_05580"
                     /old_locus_tag="BSU05580"
     CDS             585564..585908
                     /gene="ydgD"
                     /locus_tag="BSU_05590"
                     /old_locus_tag="BSU05590"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388440.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05590"
                     /db_xref="EnsemblGenomes-Tr:CAB12366"
                     /db_xref="GOA:P96702"
                     /db_xref="InterPro:IPR032808"
                     /db_xref="SubtiList:BG12171"
                     /db_xref="UniProtKB/Swiss-Prot:P96702"
                     /translation="MISIMMKVSLAVFMLAGGIIKVSRVPFQVEHWRHYQYPLWFLTV
                     TGILEIAGALAMTAGIWNRYAAIGAGVLFVVLMAGAIHAHMFRARQSVIMAIQAMICL
                     IVSIMIIMGSYT*"
     gene            585564..585908
                     /gene="ydgD"
                     /locus_tag="BSU_05590"
                     /old_locus_tag="BSU05590"
     S_feature       585909..586070
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_603941_604102"
                     /HighExp="Salt, Diami, dia15, dia5, aero, H2O2, SMMPr,
                     Etha, Lbtran, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S196"
     CDS             586071..586544
                     /gene="ydgE"
                     /locus_tag="BSU_05600"
                     /old_locus_tag="BSU05600"
                     /EC_number="2.3.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_388441.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05600"
                     /db_xref="EnsemblGenomes-Tr:CAB12367"
                     /db_xref="GOA:P96703"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG12172"
                     /db_xref="UniProtKB/Swiss-Prot:P96703"
                     /translation="MAFTLEDMTEEEFEAFRGMSVQNFAKQNITSGTWTEKEAFEKSE
                     QAYENMIPNGRDSSNHYFWNITNDQGERMGWLWLYADPLHPQKEAFIYSFGLYEAFRG
                     KGLAQLALQTLDERARELGAERLALHVFAHNETAVYLYQKMGYAMTNIRMRKQLC*"
     gene            586071..586544
                     /gene="ydgE"
                     /locus_tag="BSU_05600"
                     /old_locus_tag="BSU05600"
     S_feature       586545..587237
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_604577_605269"
                     /HighExp="Salt, H2O2, dia15, aero, T-2.40H, Diami,
                     T-3.40H, T-1.40H, T-4.40H, T-0.40H"
                     /AntisenseName="vmlR"
                     /AntisenseCor="-7.1224465259194999E-2"
                     /AntisenseRegPval="-0.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S197"
     downshifts      complement(586687)
                     /Source="Nicolas_upshifts"
                     /id="D267"
                     /incds=0
                     /nref=4
                     /ntot=88
                     /MaxReadThrough="0.39199"
                     /MaxDrop="3.39645"
                     /score="18.2783449"
                     /energy="-8.8"
                     /TU="NA"
                     /idTUdmin="U436"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(586704..588347)
                     /gene="vmlR"
                     /locus_tag="BSU_05610"
                     /old_locus_tag="BSU05610"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16109936, 22226636, 24687494, 25891423"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16109936, 22226636,
                     24687494, 25891423; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette efflux transporter"
                     /protein_id="NP_388442.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05610"
                     /db_xref="EnsemblGenomes-Tr:CAB12368"
                     /db_xref="GOA:P39115"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR032781"
                     /db_xref="SubtiList:BG10767"
                     /db_xref="UniProtKB/Swiss-Prot:P39115"
                     /translation="MKEIVTLTNVSYEVKDQTVFKHVNASVQQGDIIGIIGKNGAGKS
                     TLLHLIHNDLAPAQGQILRKDIKLALVEQETAAYSFADQTPAEKKLLEKWHVPLRDFH
                     QLSGGEKLKARLAKGLSEDADLLLLDEPTNHLDEKSLQFLIQQLKHYNGTVILVSHDR
                     YFLDEAATKIWSLEDQTLIEFKGNYSGYMKFREKKRLTQQREYEKQQKMVERIEAQMN
                     GLASWSEKAHAQSTKKEGFKEYHRVKAKRTDAQIKSKQKRLEKELEKAKAEPVTPEYT
                     VRFSIDTTHKTGKRFLEVQNVTKAFGERTLFKNANFTIQHGEKVAIIGPNGSGKTTLL
                     NIILGQETAEGSVWVSPSANIGYLTQEVFDLPLEQTPEELFENETFKARGHVQNLMRH
                     LGFTAAQWTEPIKHMSMGERVKIKLMAYILEEKDVLILDEPTNHLDLPSREQLEETLS
                     QYSGTLLAVSHDRYFLEKTTNSKLVISNNGIEKQLNDVPSERNEREELRLKLETERQE
                     VLGKLSFMTPNDKGYKELDQAFNELTKRIKELDHQDKKD*"
     gene            complement(586704..588347)
                     /gene="vmlR"
                     /locus_tag="BSU_05610"
                     /old_locus_tag="BSU05610"
     S_feature       complement(588382..588579)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_606414_606611_c"
                     /HighExp="BC, Sw, B60, B36, LoTm, S7, HiOs, S4, BI,
                     M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S198"
     promotor_-35    588396..588398
                     /Source="Nicolas_upshift_promotors"
                     /id="U435"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.433566433566434"
                     /psig="0.494505494505494"
                     /xcortree=34
                     /SigmaFactorBS="gctttaaagggagaataaaaaaatcctcccaaatgtgTTGga
                     aggattagccgtgcCTGTGCATGATCAAATAAGctattttttataaatagcagtgtcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    588415..588433
                     /Source="Nicolas_upshift_promotors"
                     /id="U435"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.433566433566434"
                     /psig="0.494505494505494"
                     /xcortree=34
                     /SigmaFactorBS="gctttaaagggagaataaaaaaatcctcccaaatgtgTTGga
                     aggattagccgtgcCTGTGCATGATCAAATAAGctattttttataaatagcagtgtcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        588419
                     /Source="Nicolas_upshifts"
                     /id="U435"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.433566433566434"
                     /psig="0.494505494505494"
                     /xcortree=34
                     /SigmaFactorBS="gctttaaagggagaataaaaaaatcctcccaaatgtgTTGga
                     aggattagccgtgcCTGTGCATGATCAAATAAGctattttttataaatagcagtgtcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      complement(588425)
                     /Source="Nicolas_upshifts"
                     /id="D268"
                     /incds=0
                     /nref=210
                     /ntot=265
                     /MaxReadThrough="3.59768"
                     /MaxDrop="6.27457"
                     /score="29.5863709"
                     /energy="-11.8"
                     /TU="U436"
                     /idTUdmin="U437"
                     /TUdmin=242
                     /isTUend="FALSE"
     downshifts      588545
                     /Source="Nicolas_upshifts"
                     /id="D269"
                     /incds=0
                     /nref=35
                     /ntot=150
                     /MaxReadThrough="1.71902"
                     /MaxDrop="4.95368"
                     /score="-7.23582918"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U435"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     promotor_-10    complement(588571..588590)
                     /Source="Nicolas_upshift_promotors"
                     /id="U436"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.717282717282717"
                     /psig=1
                     /xcortree=414
                     /SigmaFactorBS="atgagagcaggagtttttttgatgaaaatgaccTTTGCTTTt
                     gaatttaaaggTATGCTATAGTGTTTGTAATcaaaacaagaagggatgatgggtggac
                     a"
                     /listShort="S198, vmlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(588583)
                     /Source="Nicolas_upshifts"
                     /id="U436"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.717282717282717"
                     /psig=1
                     /xcortree=414
                     /SigmaFactorBS="atgagagcaggagtttttttgatgaaaatgaccTTTGCTTTt
                     gaatttaaaggTATGCTATAGTGTTTGTAATcaaaacaagaagggatgatgggtggac
                     a"
                     /listShort="S198, vmlR"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(588603..588610)
                     /Source="Nicolas_upshift_promotors"
                     /id="U436"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.717282717282717"
                     /psig=1
                     /xcortree=414
                     /SigmaFactorBS="atgagagcaggagtttttttgatgaaaatgaccTTTGCTTTt
                     gaatttaaaggTATGCTATAGTGTTTGTAATcaaaacaagaagggatgatgggtggac
                     a"
                     /listShort="S198, vmlR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(588666)
                     /Source="Nicolas_upshifts"
                     /id="D270"
                     /incds=0
                     /nref=92
                     /ntot=203
                     /MaxReadThrough="2.22553"
                     /MaxDrop="5.71399"
                     /score="18.9878298"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U437"
                     /TUdmin=1
                     /isTUend="TRUE"
     CDS             complement(588667..590043)
                     /gene="ydgF"
                     /locus_tag="BSU_05620"
                     /old_locus_tag="BSU05620"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16109936,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amino acid permease"
                     /protein_id="NP_388443.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05620"
                     /db_xref="EnsemblGenomes-Tr:CAB12369"
                     /db_xref="GOA:P96704"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004840"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="SubtiList:BG12173"
                     /db_xref="UniProtKB/Swiss-Prot:P96704"
                     /translation="MTDDMTKDNINQQTLQRGLKNRHIQLIAIGGAIGTGLFLGSGKS
                     IHFAGPSILFAYMITGIICFLIMRSLGELLLSNLNYHSFVDFVQDYLGDMAAFITGWT
                     YWFCWISIAMADLTAVGLYTQYWLPGVPQWVPGLIALIILLIMNLATVKLFGELEFWF
                     ALIKVIAILALIVIGLVMIFKGFSTSSGVSSFTNLWSHGGLFPNGMHGFILSFQMVVF
                     AFVGIELVGLTAGETENPEKVIPKAINNIPVRVLLFYIGALLVIMSIYPWDIINPSES
                     PFVQVFVAVGIVGAASIINFVVLTSAASACNSAVFSTSRMVYSLAKDHNAPESMAKLT
                     QRKVPRNALFFSAIVILIGVTLNYIMPEGVFTLITSISTVCFIYIWGITVICHMKYRK
                     TRPELAKTNKFKLPLYPFTNYLILAFLAFVLVVLALAQDTRVSLFVTPVWFILLIVIY
                     KVRKAKHQ*"
     gene            complement(588667..590043)
                     /gene="ydgF"
                     /locus_tag="BSU_05620"
                     /old_locus_tag="BSU05620"
     misc_feature    complement(590093..590112)
                     /Source="Nicolas_upshift_promotors"
                     /id="U437"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.897102897102897"
                     /psig=1
                     /xcortree=1890
                     /SigmaFactorBS="aatcacattaaaattcttttcatcaatccttttttagtaaaa
                     aagatagaaattttAGTGTTATAATAATCATTAAaaatagattgctgactcaataaac
                     a"
                     /listShort="ydgF"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(590108)
                     /Source="Nicolas_upshifts"
                     /id="U437"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.897102897102897"
                     /psig=1
                     /xcortree=1890
                     /SigmaFactorBS="aatcacattaaaattcttttcatcaatccttttttagtaaaa
                     aagatagaaattttAGTGTTATAATAATCATTAAaaatagattgctgactcaataaac
                     a"
                     /listShort="ydgF"
                     /GFF_Attribute="listLong"
     CDS             complement(590214..590732)
                     /gene="dinB"
                     /locus_tag="BSU_05630"
                     /old_locus_tag="BSU05630"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 1847907, 3110138,
                     12644484, 16267290, 22059487; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="nuclease inhibitor"
                     /protein_id="NP_388444.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05630"
                     /db_xref="EnsemblGenomes-Tr:CAB12370"
                     /db_xref="GOA:Q02886"
                     /db_xref="InterPro:IPR007837"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="SubtiList:BG10539"
                     /db_xref="UniProtKB/Swiss-Prot:Q02886"
                     /translation="MSDFAFKLYEYNVWANQQIFNRLKELPKEIYHQEIQSVFPSISH
                     VLSHVYLSDLGWIEVFSGKTLSDALALAEQLKEQTEAKEIEEMEDLFLRLSERYILFL
                     QQKEQLNKPLQIQNPSSGIMKTTVSELLPHVVNHGTYHRGNITAMLRQAGYASAPTDY
                     GLYLFMTKTEKA*"
     gene            complement(590214..590732)
                     /gene="dinB"
                     /locus_tag="BSU_05630"
                     /old_locus_tag="BSU05630"
     downshifts      complement(590228)
                     /Source="Nicolas_upshifts"
                     /id="D271"
                     /incds=0
                     /nref=35
                     /ntot=176
                     /MaxReadThrough="2.77148"
                     /MaxDrop="6.32316"
                     /score="16.2748201"
                     /energy="-15"
                     /TU="NA"
                     /idTUdmin="U438"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(590758..590777)
                     /Source="Nicolas_upshift_promotors"
                     /id="U438"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.839160839160839"
                     /psig=1
                     /xcortree=1506
                     /SigmaFactorBS="tcctctaaactatatatgtcaacaaattttattttcgagcaC
                     TCTacataagaactcatgTTCGTGTATAATGAAAGCTAtacacacgaaagggggaatt
                     t"
                     /listShort="dinB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(590777)
                     /Source="Nicolas_upshifts"
                     /id="U438"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.839160839160839"
                     /psig=1
                     /xcortree=1506
                     /SigmaFactorBS="tcctctaaactatatatgtcaacaaattttattttcgagcaC
                     TCTacataagaactcatgTTCGTGTATAATGAAAGCTAtacacacgaaagggggaatt
                     t"
                     /listShort="dinB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(590793..590796)
                     /Source="Nicolas_upshift_promotors"
                     /id="U438"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.839160839160839"
                     /psig=1
                     /xcortree=1506
                     /SigmaFactorBS="tcctctaaactatatatgtcaacaaattttattttcgagcaC
                     TCTacataagaactcatgTTCGTGTATAATGAAAGCTAtacacacgaaagggggaatt
                     t"
                     /listShort="dinB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    590814..590821
                     /Source="Nicolas_upshift_promotors"
                     /id="U439"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig="0.97002997002997"
                     /xcortree=2440
                     /SigmaFactorBS="gagtgctcgaaaataaaattTGTTGACAtatatagtttagag
                     GAATAAACTAATTGACATTGaacataaagtttagcggggtaaactataatgaggaggg
                     g"
                     /listShort="ydgG, ydgH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    590836..590855
                     /Source="Nicolas_upshift_promotors"
                     /id="U439"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig="0.97002997002997"
                     /xcortree=2440
                     /SigmaFactorBS="gagtgctcgaaaataaaattTGTTGACAtatatagtttagag
                     GAATAAACTAATTGACATTGaacataaagtttagcggggtaaactataatgaggaggg
                     g"
                     /listShort="ydgG, ydgH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        590854
                     /Source="Nicolas_upshifts"
                     /id="U439"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.528471528471528"
                     /psig="0.97002997002997"
                     /xcortree=2440
                     /SigmaFactorBS="gagtgctcgaaaataaaattTGTTGACAtatatagtttagag
                     GAATAAACTAATTGACATTGaacataaagtttagcggggtaaactataatgaggaggg
                     g"
                     /listShort="ydgG, ydgH"
                     /GFF_Attribute="listLong"
     CDS             590901..591359
                     /gene="ydgG"
                     /locus_tag="BSU_05640"
                     /old_locus_tag="BSU05640"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (MarR
                     family)"
                     /protein_id="NP_388445.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05640"
                     /db_xref="EnsemblGenomes-Tr:CAB12371"
                     /db_xref="GOA:P96705"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12174"
                     /db_xref="UniProtKB/Swiss-Prot:P96705"
                     /translation="MNEQKLCQAINLFVEVLLEGTEFVHREINQDVFKHISREQADLL
                     KILKVKGPTSPGSLAMYQNVHKSAISNRLKKLLEKGLVQWDDCPEKSDRRSKLINITP
                     SGEHILEELDSAIFNALKPLIDDIDEEHLHSIIEIFTILKSKFKGGDSAE*"
     gene            590901..591359
                     /gene="ydgG"
                     /locus_tag="BSU_05640"
                     /old_locus_tag="BSU05640"
     CDS             591356..594013
                     /gene="ydgH"
                     /locus_tag="BSU_05650"
                     /old_locus_tag="BSU05650"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15941986; Product type
                     m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane component"
                     /protein_id="NP_388446.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05650"
                     /db_xref="EnsemblGenomes-Tr:CAB12372"
                     /db_xref="GOA:P96706"
                     /db_xref="InterPro:IPR000731"
                     /db_xref="InterPro:IPR004869"
                     /db_xref="SubtiList:BG12175"
                     /db_xref="UniProtKB/Swiss-Prot:P96706"
                     /translation="MRAIIKFKWAIAAIVLALTVVLSLFSPNLTELANQKGQAQLPAD
                     AVSERANAILKQAGEDNNSISVVFTLDNAIKKETENQLRIIIDKIKKIDGVEEVTSPL
                     SAEKEVKDQLMSKDKKTVLMPVTITGSDKKAEKIADEIYQIVPDDLTAYITGASLINQ
                     DFAHSSEEGLKKTEVITVCLIIGLLLIVFRSVVTPFIPIVVVGFSYLISQSILGILVY
                     NVDFPISTFTQTFLVAILFGIGTDYCILLLTRFREELANGHDKKEAALIAYRTGGKTL
                     FISGFAVLIGFSALGFAKFAIFQSAVGVAVGVGILMIILYTLLPLFMVTLGEKLFWPS
                     KKVLSHSDNKLWAFLGRHSVARPFLFIVITVVITLPFILTYDDQISFDSTAEISSDYK
                     SIKALEAIKDGFGEGKAFPINVVVKGDKDLTTADTIPYLGNISKAIEKVDHVDSVMTI
                     TQPTGKKIKDLYIDNQLGSVSDGLDKTVKGIADVQSGLTDIENGLNQMAGQTGSASNG
                     GSGGSLGDAADGLGKINQQLQLVSKQISQTGNTAQTVQQLTAISGQLGQIQTGLEQAN
                     QQLSGQQAQAGTLTESLKKLSEGVKSANEGLTKVSDGITASSDILEDMSKSPTVRDTG
                     IFIPDQVMKDKDFKKSIDQYSFADGKGVQLSVVLDSNPYSEQAITTINQIKKAVANEV
                     DGTPLENAQIVYGGVTSMNADLKELSTTDFSRTMVIMIIGLFIVLTILFRSMIMPIYM
                     IASLLLTYYTSISITELIFVNGLGNAGVSWAVPFFSFVILIALGVDYSIFLLDRFKEE
                     VHLGIEQGVVRSMSKMGSVIITAAIILAGTFAAMMPSGVNTLMQVASVIIIGLLLYGL
                     VILPLFIPAIIATFGEGNWWPFGRKKGKE*"
     gene            591356..594013
                     /gene="ydgH"
                     /locus_tag="BSU_05650"
                     /old_locus_tag="BSU05650"
     downshifts      594134
                     /Source="Nicolas_upshifts"
                     /id="D272"
                     /incds=0
                     /nref=3
                     /ntot=27
                     /MaxReadThrough="0.245049999999999"
                     /MaxDrop="4.45167"
                     /score="13.780898"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U439"
                     /TUdmin=22
                     /isTUend="TRUE"
     CDS             complement(594159..594788)
                     /gene="ydgI"
                     /locus_tag="BSU_05660"
                     /old_locus_tag="BSU05660"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 26415543; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase of unidentified specificity
                     (reduces 5-(aziridin-1-yl)-2,4-dinitrobenzamide prodrug)"
                     /protein_id="NP_388447.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05660"
                     /db_xref="EnsemblGenomes-Tr:CAB12385"
                     /db_xref="GOA:P96707"
                     /db_xref="InterPro:IPR000415"
                     /db_xref="InterPro:IPR029479"
                     /db_xref="SubtiList:BG12176"
                     /db_xref="UniProtKB/Swiss-Prot:P96707"
                     /translation="MIKTNDFMEIMKGRRSIRNYDPAVKISKEEMTEILEEATTAPSS
                     VNAQPWRFLVIDSPEGKEKLAPLASFNQTQVTTSSAVIAVFADMNNADYLEEIYSKAV
                     ELGYMPQEVKDRQIAALTAHFEKLPAQVNRETILIDGGLVSMQLMLTARAHGYDTNPI
                     GGYDKENIAETFGLDKERYVPVMLLSIGKAADEGYASYRLPIDTIAEWK*"
     gene            complement(594159..594788)
                     /gene="ydgI"
                     /locus_tag="BSU_05660"
                     /old_locus_tag="BSU05660"
     downshifts      complement(594163)
                     /Source="Nicolas_upshifts"
                     /id="D273"
                     /incds=0
                     /nref=21
                     /ntot=184
                     /MaxReadThrough="2.66406"
                     /MaxDrop="6.06581"
                     /score="21.7451043"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U440"
                     /TUdmin=3
                     /isTUend="TRUE"
     CDS             complement(594804..595298)
                     /gene="ydgJ"
                     /locus_tag="BSU_05670"
                     /old_locus_tag="BSU05670"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (MarR
                     family)"
                     /protein_id="NP_388448.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05670"
                     /db_xref="EnsemblGenomes-Tr:CAB12386"
                     /db_xref="GOA:P96708"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR001845"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12177"
                     /db_xref="UniProtKB/Swiss-Prot:P96708"
                     /translation="MTCQSLIYQLIVLTGKKGWVLASFCSEEAEILYQLQGVNKVIGV
                     KFEACTGISQSRLELLTLLYHADEISQSDLQKKVNIDSAAVTRHLKQLESKGMVSRRR
                     KPEDNRITLVRLTDQGRERIESSKKEKERFMKEMLANVSAEERRLLIDVLARMRNNIN
                     NIEA*"
     gene            complement(594804..595298)
                     /gene="ydgJ"
                     /locus_tag="BSU_05670"
                     /old_locus_tag="BSU05670"
     promotor_-10    complement(595290..595309)
                     /Source="Nicolas_upshift_promotors"
                     /id="U440"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig=1
                     /xcortree=1967
                     /SigmaFactorBS="ttatgcgctgggaggttgttcaaaagtgcaaatggCTTGCAa
                     gatgaaatcaatcgTTGTATATTAATTGACGTGTcaatcattgatatatcaattaata
                     g"
                     /listShort="ydgJ, ydgI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(595305)
                     /Source="Nicolas_upshifts"
                     /id="U440"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig=1
                     /xcortree=1967
                     /SigmaFactorBS="ttatgcgctgggaggttgttcaaaagtgcaaatggCTTGCAa
                     gatgaaatcaatcgTTGTATATTAATTGACGTGTcaatcattgatatatcaattaata
                     g"
                     /listShort="ydgJ, ydgI"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(595325..595330)
                     /Source="Nicolas_upshift_promotors"
                     /id="U440"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig=1
                     /xcortree=1967
                     /SigmaFactorBS="ttatgcgctgggaggttgttcaaaagtgcaaatggCTTGCAa
                     gatgaaatcaatcgTTGTATATTAATTGACGTGTcaatcattgatatatcaattaata
                     g"
                     /listShort="ydgJ, ydgI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    595496..595498
                     /Source="Nicolas_upshift_promotors"
                     /id="U441"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=2606
                     /SigmaFactorBS="ttcggaatatcactttgccggcccgtgctcaagcggCTTtca
                     caggctgaaagtTATGATACAATATACAAATGtttcacagcttcaatccatagttgga
                     g"
                     /listShort="S199, ydgK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    595514..595533
                     /Source="Nicolas_upshift_promotors"
                     /id="U441"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=2606
                     /SigmaFactorBS="ttcggaatatcactttgccggcccgtgctcaagcggCTTtca
                     caggctgaaagtTATGATACAATATACAAATGtttcacagcttcaatccatagttgga
                     g"
                     /listShort="S199, ydgK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       595520..595608
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_613552_613640"
                     /HighExp="H2O2, G180, G135, Diami, Paraq, Oxctl, G150,
                     LBGexp, LPh, HPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S199"
     upshifts        595520
                     /Source="Nicolas_upshifts"
                     /id="U441"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=2606
                     /SigmaFactorBS="ttcggaatatcactttgccggcccgtgctcaagcggCTTtca
                     caggctgaaagtTATGATACAATATACAAATGtttcacagcttcaatccatagttgga
                     g"
                     /listShort="S199, ydgK"
                     /GFF_Attribute="listLong"
     CDS             595609..596817
                     /gene="ydgK"
                     /locus_tag="BSU_05680"
                     /old_locus_tag="BSU05680"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388449.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05680"
                     /db_xref="EnsemblGenomes-Tr:CAB12387"
                     /db_xref="GOA:P96709"
                     /db_xref="InterPro:IPR004812"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12178"
                     /db_xref="UniProtKB/Swiss-Prot:P96709"
                     /translation="MLHNPTGKERLALAFLLGMLAILGPLNIDMYLPSFPEIAKDLSA
                     SASLVQLSLTACLVGLTIGQLIVGPVSDAQGRRKPLLICIFLFALSSLFCALSPNITT
                     LVAARFLQGFTASAGLVLSRAIVRDVFTGRELSKFFSLLMVITAVAPMVAPMTGGAIL
                     LLPFATWHTIFHVLMIIGFLLVLLIALRLKETLPLEKRIPSSIGTSVKTMGSLLKDRS
                     FMGYALTVGFIHGGSFAYVSGTPFVYQDIYGVSPQVFSILFGINGLAIISGSFIIGRF
                     GGIIHEKSLLRIAVITAMIATAVLLTMTMIHGPLATLVISIFIYMITIGMVLTSTFTL
                     AMEKQGHRAGSASALLGMLPLLLGSIVSPLVGINETTAVPMGAIMFVTAVIGSLAFFG
                     LTKERVGQNS*"
     gene            595609..596817
                     /gene="ydgK"
                     /locus_tag="BSU_05680"
                     /old_locus_tag="BSU05680"
     downshifts      596796
                     /Source="Nicolas_upshifts"
                     /id="D274"
                     /incds=0
                     /nref=23
                     /ntot=112
                     /MaxReadThrough="0.507390000000001"
                     /MaxDrop="3.27202"
                     /score="25.806679"
                     /energy="-7.5"
                     /TU="NA"
                     /idTUdmin="U441"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(596853..597590)
                     /gene="ydhB"
                     /locus_tag="BSU_05690"
                     /old_locus_tag="BSU05690"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388450.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05690"
                     /db_xref="EnsemblGenomes-Tr:CAB12388"
                     /db_xref="GOA:O05493"
                     /db_xref="InterPro:IPR002781"
                     /db_xref="SubtiList:BG12179"
                     /db_xref="UniProtKB/Swiss-Prot:O05493"
                     /translation="MLIILVMFLLGIILGFIGAGGAGFVIALLTLLFHIPIHTALGTS
                     LAGMAFTSLSGAYSHYREGNIQMKIGLIVGGFAAVGSFFGAKLTSFIPADLLHYLTAG
                     MLFLSAILILIRLFILKEKAQVNQSTLSTYTRAVILGIAAGVLSGTFGIGSAPFIQIG
                     LMIMLNLSIRHSVGTTMLVIIPLAVGGGIGYITEGFVDYVLLVKVLVGTMCGAYVGAK
                     FTNLMPKVVLKSAIFLTPAIAGLLLLF*"
     gene            complement(596853..597590)
                     /gene="ydhB"
                     /locus_tag="BSU_05690"
                     /old_locus_tag="BSU05690"
     S_feature       complement(597591..597729)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_615623_615761_c"
                     /HighExp="T0.30H, T1.30H, T1.0H, T-0.40H, T2.0H, T0.0H,
                     LBGstat, T2.30H, T-1.10H, T-1.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.108111"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S200"
     promotor_-10    complement(597717..597736)
                     /Source="Nicolas_upshift_promotors"
                     /id="U442"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.773226773226773"
                     /psig="0.999000999001"
                     /xcortree=1711
                     /SigmaFactorBS="atataacagatggtaatgggaagcaacaaactGCCTTGTCag
                     atccctgaattTGAGGTACGATATGTTTGCTgaacgacggtcgacggactactggcaa
                     c"
                     /listShort="S200, ydhB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(597729)
                     /Source="Nicolas_upshifts"
                     /id="U442"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.773226773226773"
                     /psig="0.999000999001"
                     /xcortree=1711
                     /SigmaFactorBS="atataacagatggtaatgggaagcaacaaactGCCTTGTCag
                     atccctgaattTGAGGTACGATATGTTTGCTgaacgacggtcgacggactactggcaa
                     c"
                     /listShort="S200, ydhB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(597750..597757)
                     /Source="Nicolas_upshift_promotors"
                     /id="U442"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.773226773226773"
                     /psig="0.999000999001"
                     /xcortree=1711
                     /SigmaFactorBS="atataacagatggtaatgggaagcaacaaactGCCTTGTCag
                     atccctgaattTGAGGTACGATATGTTTGCTgaacgacggtcgacggactactggcaa
                     c"
                     /listShort="S200, ydhB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    597761..597768
                     /Source="Nicolas_upshift_promotors"
                     /id="U443"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig="0.999000999001"
                     /xcortree=1978
                     /SigmaFactorBS="atcgtacctcaaattcagggatctgacaaggcagtTTGTTGC
                     TtcccattaccatcTGTTATATGATTTTGATGAAgaaaagcccttgaatatattcaaa
                     a"
                     /listShort="ydhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    597782..597801
                     /Source="Nicolas_upshift_promotors"
                     /id="U443"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig="0.999000999001"
                     /xcortree=1978
                     /SigmaFactorBS="atcgtacctcaaattcagggatctgacaaggcagtTTGTTGC
                     TtcccattaccatcTGTTATATGATTTTGATGAAgaaaagcccttgaatatattcaaa
                     a"
                     /listShort="ydhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        597786
                     /Source="Nicolas_upshifts"
                     /id="U443"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig="0.999000999001"
                     /xcortree=1978
                     /SigmaFactorBS="atcgtacctcaaattcagggatctgacaaggcagtTTGTTGC
                     TtcccattaccatcTGTTATATGATTTTGATGAAgaaaagcccttgaatatattcaaa
                     a"
                     /listShort="ydhC"
                     /GFF_Attribute="listLong"
     CDS             597839..598513
                     /gene="ydhC"
                     /locus_tag="BSU_05700"
                     /old_locus_tag="BSU05700"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (GntR
                     family)"
                     /protein_id="NP_388451.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05700"
                     /db_xref="EnsemblGenomes-Tr:CAB12389"
                     /db_xref="GOA:O05494"
                     /db_xref="InterPro:IPR000485"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR008920"
                     /db_xref="InterPro:IPR011711"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12180"
                     /db_xref="UniProtKB/Swiss-Prot:O05494"
                     /translation="MDDFKLDKPTPYYLQFYNQLKKMIFNGTFKPGERINETQLAKSF
                     GVSRSPIREAMRLLEKDGLLKADDRNGFSITSLTAKDVDEIYKIRIPLEQLAVELVID
                     EADEEELTILEKQLEETEKAIHNGTEDTEIIRLNQKFHELLVDFSHNRHLKNLLEHVN
                     DLIHFCRILNYTGDHRAETILREHRRIFEEVKKKNKEAAKQHVLAHFNHDCEHLKHVL
                     EEGKEN*"
     gene            597839..598513
                     /gene="ydhC"
                     /locus_tag="BSU_05700"
                     /old_locus_tag="BSU05700"
     promotor_-35    598572..598577
                     /Source="Nicolas_upshift_promotors"
                     /id="U444"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1131
                     /SigmaFactorBS="agcagaacccttggtatttttttatgtattcacCACATAtct
                     aagaggccccgtTAATAAGATTTTATGATGGtttgactaacgaataatgggggttaaa
                     t"
                     /listShort="ydhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    598593..598611
                     /Source="Nicolas_upshift_promotors"
                     /id="U444"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1131
                     /SigmaFactorBS="agcagaacccttggtatttttttatgtattcacCACATAtct
                     aagaggccccgtTAATAAGATTTTATGATGGtttgactaacgaataatgggggttaaa
                     t"
                     /listShort="ydhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        598599
                     /Source="Nicolas_upshifts"
                     /id="U444"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1131
                     /SigmaFactorBS="agcagaacccttggtatttttttatgtattcacCACATAtct
                     aagaggccccgtTAATAAGATTTTATGATGGtttgactaacgaataatgggggttaaa
                     t"
                     /listShort="ydhD"
                     /GFF_Attribute="listLong"
     CDS             598640..599902
                     /gene="spoL"
                     /locus_tag="BSU_05710"
                     /old_locus_tag="BSU05710"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11011148, 12177332; Product
                     type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore cortex lytic enzyme"
                     /protein_id="NP_388452.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05710"
                     /db_xref="EnsemblGenomes-Tr:CAB12390"
                     /db_xref="GOA:O05495"
                     /db_xref="InterPro:IPR001223"
                     /db_xref="InterPro:IPR011583"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="PDB:3CZ8"
                     /db_xref="SubtiList:BG12181"
                     /db_xref="UniProtKB/Swiss-Prot:O05495"
                     /translation="MFIHIVGPGDSLFSIGRRYGASVDQIRGVNGLDETNIVPGQALL
                     IPLYVYTVQPRDTLTAIAAKAFVPLERLRAANPGISPNALQAGAKITIPSISNYIAGT
                     LSFYVLRNPDLDRELINDYAPYSSSISIFEYHIAPNGDIANQLNDAAAIETTWQRRVT
                     PLATITNLTSGGFSTEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQVSAAD
                     RDLFTGFLRQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYGGIGAVVNYMFIMAYD
                     WHHAGSEPGPVAPITEIRRTIEFTIAQVPSRKIIIGVPLYGYDWIIPYQPGTVASAIS
                     NQNAIERAMRYQAPIQYSAEYQSPFFRYSDQQGRTHEVWFEDVRSMSRKMQIVREYRL
                     QAIGAWQLTLGFTPGPWLLRKFFTIRKV*"
     gene            598640..599902
                     /gene="spoL"
                     /locus_tag="BSU_05710"
                     /old_locus_tag="BSU05710"
     downshifts      599876
                     /Source="Nicolas_upshifts"
                     /id="D275"
                     /incds=0
                     /nref=33
                     /ntot=81
                     /MaxReadThrough="2.3134"
                     /MaxDrop="5.20337"
                     /score="15.7593331"
                     /energy="-7.1"
                     /TU="NA"
                     /idTUdmin="U444"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    599974..599981
                     /Source="Nicolas_upshift_promotors"
                     /id="U445"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.612387612387612"
                     /psig="0.999000999001"
                     /xcortree=1616
                     /SigmaFactorBS="taagtccagagcagcagaatagttcattcatttgtACCTTGC
                     AtgggttgtgttccCATTTTACGATTAGTAGTAGtctgatcaaacaaagagtcagaat
                     a"
                     /listShort="ydhE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    599995..600014
                     /Source="Nicolas_upshift_promotors"
                     /id="U445"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.612387612387612"
                     /psig="0.999000999001"
                     /xcortree=1616
                     /SigmaFactorBS="taagtccagagcagcagaatagttcattcatttgtACCTTGC
                     AtgggttgtgttccCATTTTACGATTAGTAGTAGtctgatcaaacaaagagtcagaat
                     a"
                     /listShort="ydhE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        599999
                     /Source="Nicolas_upshifts"
                     /id="U445"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.612387612387612"
                     /psig="0.999000999001"
                     /xcortree=1616
                     /SigmaFactorBS="taagtccagagcagcagaatagttcattcatttgtACCTTGC
                     AtgggttgtgttccCATTTTACGATTAGTAGTAGtctgatcaaacaaagagtcagaat
                     a"
                     /listShort="ydhE"
                     /GFF_Attribute="listLong"
     CDS             600063..601250
                     /gene="ydhE"
                     /locus_tag="BSU_05720"
                     /old_locus_tag="BSU05720"
                     /function="18.1: Enzymes of unknown specificity"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 20639339; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase"
                     /protein_id="NP_388453.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05720"
                     /db_xref="EnsemblGenomes-Tr:CAB12391"
                     /db_xref="GOA:O05496"
                     /db_xref="InterPro:IPR002213"
                     /db_xref="InterPro:IPR006326"
                     /db_xref="SubtiList:BG12182"
                     /db_xref="UniProtKB/Swiss-Prot:O05496"
                     /translation="MKTVLILNFPAEGHVNPTLGITKAFSDKGYDVHYISTEKYKKRL
                     EAAGATVHLHRDLLRTTPIHVGSPNGILDFVKIHIKTSLDILQIVKDLSKSIQFDFVY
                     YDKFGAGELVRDYLDIPGVSSSASFLFGEEHLKILPLHPESGAPLELDQECEDLLAKM
                     KETYGVAPKNLVQFMNNKGELNVVYTSRYFQPESDRFGDECLFIGPSFPKRAEKTDFP
                     IEQLKDEKVIYISMGTVLDHTEDFFNLCIDAFSGFNGKVVIAAGEKADLTKLKQAPEN
                     FIIAPYVPQLEVLEQSDVFITHGGMNSVNEGIHFSVPLVVMPHDKDQPMVAQRLSELH
                     AGYVISKDEVNAQILKQAVDEVLRNDQYTAGIKKINQSFKECMDMEEVMERIDELIRQ
                     KNK*"
     gene            600063..601250
                     /gene="ydhE"
                     /locus_tag="BSU_05720"
                     /old_locus_tag="BSU05720"
     downshifts      601262
                     /Source="Nicolas_upshifts"
                     /id="D276"
                     /incds=0
                     /nref=17
                     /ntot=224
                     /MaxReadThrough="1.77672"
                     /MaxDrop="5.25325"
                     /score="-6.36206618"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U445"
                     /TUdmin=1
                     /isTUend="TRUE"
     CDS             complement(601289..601999)
                     /gene="ydhF"
                     /locus_tag="BSU_05730"
                     /old_locus_tag="BSU05730"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10913081, 11557812;
                     Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphate-starvation lipoprotein"
                     /protein_id="NP_388454.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05730"
                     /db_xref="EnsemblGenomes-Tr:CAB12392"
                     /db_xref="InterPro:IPR029050"
                     /db_xref="InterPro:IPR029051"
                     /db_xref="SubtiList:BG12183"
                     /db_xref="UniProtKB/Swiss-Prot:O05497"
                     /translation="MRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQ
                     KDSTDDYQPNSQVTDDRTLHKVGQTFSDDKGKAVLKDIKQVNKTYKIGDVELTVKEMK
                     LIHLRPDYSMIDYFHELTHDEEFDFVKVFVDIKNTSTKKVNVAPIALMKTNTGETFDW
                     NKDIYLEELNGELEGGAEKSGNLGFIVNASSGHAHDKAADAEKKTKEIKWIEITTSDV
                     FDHNHKKISDAQKIKIKF*"
     gene            complement(601289..601999)
                     /gene="ydhF"
                     /locus_tag="BSU_05730"
                     /old_locus_tag="BSU05730"
     downshifts      complement(601315)
                     /Source="Nicolas_upshifts"
                     /id="D277"
                     /incds=0
                     /nref=11
                     /ntot=36
                     /MaxReadThrough="4.05808"
                     /MaxDrop="4.7318"
                     /score="13.7192471"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U446"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(602065..603453)
                     /gene="phoB"
                     /locus_tag="BSU_05740"
                     /old_locus_tag="BSU05740"
                     /EC_number="3.1.3.1"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9335276, 10913081, 16030210, 16491025, 26382712,
                     27226549"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9335276, 10913081,
                     16030210, 16491025, 26382712, 27226549; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase III (promiscuous,
                     heptaprenylglyceryl phosphate is a substrate)"
                     /protein_id="NP_388455.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05740"
                     /db_xref="EnsemblGenomes-Tr:CAB12393"
                     /db_xref="GOA:P19405"
                     /db_xref="InterPro:IPR001952"
                     /db_xref="InterPro:IPR017849"
                     /db_xref="InterPro:IPR017850"
                     /db_xref="InterPro:IPR018299"
                     /db_xref="SubtiList:BG10697"
                     /db_xref="UniProtKB/Swiss-Prot:P19405"
                     /translation="MKKFPKKLLPIAVLSSIAFSSLASGSVPEASAQEKKKGNQDEIK
                     NVIVLIGDGMGVSYTSAYRYLKDNKKTKVVEPTAFDQYLVGQQTTYPDDPEQNVTDSA
                     AAATAMSAGIKTYNNAIAVDNDGSEAKTVLEAAKEKGKATGLVATSEITHATPASFGS
                     HDHSRKNMNSIADDYFDEMVNGKHKIDVLLGGGKSNFDRKDRNLIKEFKKAGYSYVDD
                     RKDMLKNKDSQVLGLFADGGLPKKIDRTKDIPSLKDMTNTAIKKLNKDKDGFFLMVEG
                     SQIDWAGHDNDIVGAMSEMEDFEQAYKAAIDFAKKDKHTLVVATADHSTGGYSIGADG
                     IYNWFSEPIKAAKRTPDFMAEKIADGADVEKTLKTYIDQKKLALTKAEIQSVEEAAKS
                     KEVLDIDNAIENIFNKRSHTGWTTGGHTGEDVPVYAYGPSSETFAGQIDNTEIAKNVF
                     KALQYNIKINDK*"
     gene            complement(602065..603453)
                     /gene="phoB"
                     /locus_tag="BSU_05740"
                     /old_locus_tag="BSU05740"
     promotor_-10    complement(603510..603527)
                     /Source="Nicolas_upshift_promotors"
                     /id="U446"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.982017982017982"
                     /psig="0.011988011988012"
                     /xcortree=9
                     /SigmaFactorBS="ggtgccagttcattattcttgtaaatccaaTCTTTAAAatcg
                     atTAATACTAGCTTAACAGTttaaaaatataattgggttgtcattgagattcatctat
                     a"
                     /listShort="phoB, ydhF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(603511)
                     /Source="Nicolas_upshifts"
                     /id="U446"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.982017982017982"
                     /psig="0.011988011988012"
                     /xcortree=9
                     /SigmaFactorBS="ggtgccagttcattattcttgtaaatccaaTCTTTAAAatcg
                     atTAATACTAGCTTAACAGTttaaaaatataattgggttgtcattgagattcatctat
                     a"
                     /listShort="phoB, ydhF"
                     /GFF_Attribute="listLong"
     S_feature       complement(603513..603581)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_621545_621613_c"
                     /HighExp="S6, S4, S5, S3, S7, LoTm, S8, T5.0H, B36, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S201"
     promotor_-35    complement(603534..603541)
                     /Source="Nicolas_upshift_promotors"
                     /id="U446"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.982017982017982"
                     /psig="0.011988011988012"
                     /xcortree=9
                     /SigmaFactorBS="ggtgccagttcattattcttgtaaatccaaTCTTTAAAatcg
                     atTAATACTAGCTTAACAGTttaaaaatataattgggttgtcattgagattcatctat
                     a"
                     /listShort="phoB, ydhF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(603571..603589)
                     /Source="Nicolas_upshift_promotors"
                     /id="U447"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1157
                     /SigmaFactorBS="tattcctccaatttatttctttagtactatcgctctttcCTT
                     CTAaaacttctcataaaaGAATAACCATTATTTAAGGgtgccagttcattattcttgt
                     a"
                     /listShort="S201, phoB, ydhF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(603589)
                     /Source="Nicolas_upshifts"
                     /id="U447"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1157
                     /SigmaFactorBS="tattcctccaatttatttctttagtactatcgctctttcCTT
                     CTAaaacttctcataaaaGAATAACCATTATTTAAGGgtgccagttcattattcttgt
                     a"
                     /listShort="S201, phoB, ydhF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(603605..603610)
                     /Source="Nicolas_upshift_promotors"
                     /id="U447"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1157
                     /SigmaFactorBS="tattcctccaatttatttctttagtactatcgctctttcCTT
                     CTAaaacttctcataaaaGAATAACCATTATTTAAGGgtgccagttcattattcttgt
                     a"
                     /listShort="S201, phoB, ydhF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    603658..603665
                     /Source="Nicolas_upshift_promotors"
                     /id="U448"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.642357642357642"
                     /psig="0.997002997002997"
                     /xcortree=1887
                     /SigmaFactorBS="tagtactaaagaaataaattggaggaatagatactggCCGTG
                     GATaggcggactgaaaTCTGCTATAGTCGCATAGAAgcaacccgcttacatcttgaac
                     a"
                     /listShort="S202, ydhG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    603679..603698
                     /Source="Nicolas_upshift_promotors"
                     /id="U448"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.642357642357642"
                     /psig="0.997002997002997"
                     /xcortree=1887
                     /SigmaFactorBS="tagtactaaagaaataaattggaggaatagatactggCCGTG
                     GATaggcggactgaaaTCTGCTATAGTCGCATAGAAgcaacccgcttacatcttgaac
                     a"
                     /listShort="S202, ydhG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       603681..603814
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_621713_621846"
                     /HighExp="Diami, dia15, H2O2, Paraq, Oxctl, HPh, G180,
                     G135, LPh, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S202"
     upshifts        603681
                     /Source="Nicolas_upshifts"
                     /id="U448"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.642357642357642"
                     /psig="0.997002997002997"
                     /xcortree=1887
                     /SigmaFactorBS="tagtactaaagaaataaattggaggaatagatactggCCGTG
                     GATaggcggactgaaaTCTGCTATAGTCGCATAGAAgcaacccgcttacatcttgaac
                     a"
                     /listShort="S202, ydhG"
                     /GFF_Attribute="listLong"
     CDS             603815..604186
                     /gene="fra"
                     /locus_tag="BSU_05750"
                     /old_locus_tag="BSU05750"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:20087498, 21744456, 25826316"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20087498, 21744456,
                     25826316; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="frataxin; iron/sulfur chaperone"
                     /protein_id="NP_388456.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05750"
                     /db_xref="EnsemblGenomes-Tr:CAB12394"
                     /db_xref="GOA:Q797E6"
                     /db_xref="InterPro:IPR014922"
                     /db_xref="PDB:2OC6"
                     /db_xref="SubtiList:BG12184"
                     /db_xref="UniProtKB/Swiss-Prot:Q797E6"
                     /translation="MDVFSEYLAGIADPFHRERTEEVLTWIKNKYPNLHTEIKWNQPM
                     FTDHGTFIIGFSVSKKHLAVAPEKVTIAHVEDDIVKAGYDYTEQLIRIPWNGPVDYTL
                     LEKMIEFNILDKADCSTFWRK*"
     gene            603815..604186
                     /gene="fra"
                     /locus_tag="BSU_05750"
                     /old_locus_tag="BSU05750"
     downshifts      604165
                     /Source="Nicolas_upshifts"
                     /id="D278"
                     /incds=0
                     /nref=9
                     /ntot=150
                     /MaxReadThrough="2.88587"
                     /MaxDrop="3.59127"
                     /score="28.8500849"
                     /energy="-8.1"
                     /TU="NA"
                     /idTUdmin="U448"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(604260)
                     /Source="Nicolas_upshifts"
                     /id="D279"
                     /incds=0
                     /nref=9
                     /ntot=187
                     /MaxReadThrough="1.63268"
                     /MaxDrop="2.98181"
                     /score="0.51805655"
                     /energy="-13"
                     /TU="NA"
                     /idTUdmin="U450"
                     /TUdmin=2
                     /isTUend="TRUE"
     CDS             complement(604261..604758)
                     /gene="ydhH"
                     /locus_tag="BSU_05760"
                     /old_locus_tag="BSU05760"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388457.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05760"
                     /db_xref="EnsemblGenomes-Tr:CAB12395"
                     /db_xref="GOA:O05500"
                     /db_xref="InterPro:IPR032545"
                     /db_xref="SubtiList:BG12185"
                     /db_xref="UniProtKB/Swiss-Prot:O05500"
                     /translation="MSSHYKYPLIFTAFLLIAFCLIFFSYHLIHHVRLEYPNWQGESK
                     DQNWEAVFTKNEDAPNEYSGKLYWIGDTIEIDNTYLESLIVKKDDEVLLSSDTEIPMH
                     DYAGGTFSDGSAKEKSVSFLERLDEHELEGHDITIEVKWKQGNHYSASQLTLNEKTLF
                     DEKQQ*"
     gene            complement(604261..604758)
                     /gene="ydhH"
                     /locus_tag="BSU_05760"
                     /old_locus_tag="BSU05760"
     CDS             complement(604776..605258)
                     /gene="ydhI"
                     /locus_tag="BSU_05770"
                     /old_locus_tag="BSU05770"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_388458.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05770"
                     /db_xref="EnsemblGenomes-Tr:CAB12396"
                     /db_xref="GOA:O05501"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG12186"
                     /db_xref="UniProtKB/Swiss-Prot:O05501"
                     /translation="MMIIIPNNEIAKHMLTDFFAKHWGTPEMAISSGIFRCDELDGFA
                     AVNESGEIIGCITYTIDGKDCEIISLDSMIENKGIGTALLQQVEEKAKHAHCQRIKLI
                     TTNDNVNAIAFYQKRGYQFAAVFPNAVEKARRLKPEIPEVAENGILIRDEILFSKVID
                     *"
     gene            complement(604776..605258)
                     /gene="ydhI"
                     /locus_tag="BSU_05770"
                     /old_locus_tag="BSU05770"
     promotor_-35    604931..604938
                     /Source="Nicolas_upshift_promotors"
                     /id="U449"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=2430
                     /SigmaFactorBS="gaattgatagcctctcttttgataaaacgctatcgCATTTAC
                     AttatcattcgttgTGATAAGCTTTATTCGTTGAcaatgtgcatgtttagccttctct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    604952..604971
                     /Source="Nicolas_upshift_promotors"
                     /id="U449"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=2430
                     /SigmaFactorBS="gaattgatagcctctcttttgataaaacgctatcgCATTTAC
                     AttatcattcgttgTGATAAGCTTTATTCGTTGAcaatgtgcatgtttagccttctct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        604956
                     /Source="Nicolas_upshifts"
                     /id="U449"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=2430
                     /SigmaFactorBS="gaattgatagcctctcttttgataaaacgctatcgCATTTAC
                     AttatcattcgttgTGATAAGCTTTATTCGTTGAcaatgtgcatgtttagccttctct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(605287..605306)
                     /Source="Nicolas_upshift_promotors"
                     /id="U450"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig="0.994005994005994"
                     /xcortree=2264
                     /SigmaFactorBS="atatcgctgatttccatgccgtcacctcaacatCTATttttt
                     ttgttatatATTGTTTATATTGATAGTACatatgcaatctttcaatagaggagtgtta
                     t"
                     /listShort="ydhI, ydhH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(605297)
                     /Source="Nicolas_upshifts"
                     /id="U450"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig="0.994005994005994"
                     /xcortree=2264
                     /SigmaFactorBS="atatcgctgatttccatgccgtcacctcaacatCTATttttt
                     ttgttatatATTGTTTATATTGATAGTACatatgcaatctttcaatagaggagtgtta
                     t"
                     /listShort="ydhI, ydhH"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(605321..605324)
                     /Source="Nicolas_upshift_promotors"
                     /id="U450"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig="0.994005994005994"
                     /xcortree=2264
                     /SigmaFactorBS="atatcgctgatttccatgccgtcacctcaacatCTATttttt
                     ttgttatatATTGTTTATATTGATAGTACatatgcaatctttcaatagaggagtgtta
                     t"
                     /listShort="ydhI, ydhH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             605341..606318
                     /gene="ydhJ"
                     /locus_tag="BSU_05780"
                     /old_locus_tag="BSU05780"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-dependent phosphohydrolase"
                     /protein_id="NP_388459.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05780"
                     /db_xref="EnsemblGenomes-Tr:CAB12397"
                     /db_xref="GOA:O05502"
                     /db_xref="InterPro:IPR003607"
                     /db_xref="InterPro:IPR006674"
                     /db_xref="SubtiList:BG12187"
                     /db_xref="UniProtKB/Swiss-Prot:O05502"
                     /translation="MEISDIIYGQHHIDGVLEELIKSAPVQRLKGIYQGGASFLVNRK
                     WNVTRYEHSIGVMLLIKKLGGTIEEQIAGLLHDVSHTAFSHVVDVVFENQAEDYHENI
                     FQQVIVHSEIPDILQKHGYHTEELLSDDSRWTLLEQPAPELCADRTDYTLRDMYRYGH
                     INLHEAQTFLDHLIVRNGRMFPDSIEAAEWFVSVYYKEVIDFFLNPVNVYGYEYLARA
                     LKAALRHDVISAEDLLKTDQEVLNILRASKNEEVLSLLTSIHPGIQVIEDDIQYDFHQ
                     KKKMRLIDPSIFLDDKWIKSSGVSEKVRKMGEAAYQKAKKGVYIKILKQ*"
     gene            605341..606318
                     /gene="ydhJ"
                     /locus_tag="BSU_05780"
                     /old_locus_tag="BSU05780"
     downshifts      606298
                     /Source="Nicolas_upshifts"
                     /id="D280"
                     /incds=0
                     /nref=2
                     /ntot=92
                     /MaxReadThrough="2.31799"
                     /MaxDrop="3.19063"
                     /score="28.8500849"
                     /energy="-8.1"
                     /TU="NA"
                     /idTUdmin="U451"
                     /TUdmin="-770"
                     /isTUend="FALSE"
     promotor_-35    606345..606351
                     /Source="Nicolas_upshift_promotors"
                     /id="U451"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=176
                     /SigmaFactorBS="agtaattgccgcctgacagcggctttttttaTGTTTGGcttt
                     gcaaacaaagGGGAATAGGACAAACTGCGggaacgctttatgagaatatcagcgtatt
                     t"
                     /listShort="ydhK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    606366..606384
                     /Source="Nicolas_upshift_promotors"
                     /id="U451"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=176
                     /SigmaFactorBS="agtaattgccgcctgacagcggctttttttaTGTTTGGcttt
                     gcaaacaaagGGGAATAGGACAAACTGCGggaacgctttatgagaatatcagcgtatt
                     t"
                     /listShort="ydhK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        606374
                     /Source="Nicolas_upshifts"
                     /id="U451"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=176
                     /SigmaFactorBS="agtaattgccgcctgacagcggctttttttaTGTTTGGcttt
                     gcaaacaaagGGGAATAGGACAAACTGCGggaacgctttatgagaatatcagcgtatt
                     t"
                     /listShort="ydhK"
                     /GFF_Attribute="listLong"
     promotor_-35    606410..606417
                     /Source="Nicolas_upshift_promotors"
                     /id="U452"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.434565434565435"
                     /psig="0.98001998001998"
                     /xcortree=1765
                     /SigmaFactorBS="ataggacaaactgcgggaacgctttatgagaatatcagcgTA
                     TTTACAtaccgttcgggggTATAGTATTATCGAGAGGGCatgttttcattgtctgcgg
                     g"
                     /listShort="ydhK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        606430
                     /Source="Nicolas_upshifts"
                     /id="U452"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.434565434565435"
                     /psig="0.98001998001998"
                     /xcortree=1765
                     /SigmaFactorBS="ataggacaaactgcgggaacgctttatgagaatatcagcgTA
                     TTTACAtaccgttcgggggTATAGTATTATCGAGAGGGCatgttttcattgtctgcgg
                     g"
                     /listShort="ydhK"
                     /GFF_Attribute="listLong"
     promotor_-10    606431..606450
                     /Source="Nicolas_upshift_promotors"
                     /id="U452"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.434565434565435"
                     /psig="0.98001998001998"
                     /xcortree=1765
                     /SigmaFactorBS="ataggacaaactgcgggaacgctttatgagaatatcagcgTA
                     TTTACAtaccgttcgggggTATAGTATTATCGAGAGGGCatgttttcattgtctgcgg
                     g"
                     /listShort="ydhK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             606460..607077
                     /gene="ydhK"
                     /locus_tag="BSU_05790"
                     /old_locus_tag="BSU05790"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388460.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05790"
                     /db_xref="EnsemblGenomes-Tr:CAB12398"
                     /db_xref="InterPro:IPR011438"
                     /db_xref="PDB:2KY9"
                     /db_xref="PDB:4FIB"
                     /db_xref="PDB:4MDW"
                     /db_xref="SubtiList:BG12188"
                     /db_xref="UniProtKB/Swiss-Prot:O05503"
                     /translation="MSAGKSYRKKMKQRRMNMKISKYALGILMLSLVFVLSACGNNNS
                     TKESTHDNHSDSSTHEEMDHSGSADVPEGLQESKNPKYKVGSQVIINTSHMKGMKGAE
                     ATVTGAYDTTAYVVSYTPTNGGQRVDHHKWVIQEEIKDAGDKTLQPGDQVILEASHMK
                     GMKGATAEIDSAEKTTVYMVDYTSTTSGEKVKNHKWVTEDELSAK*"
     gene            606460..607077
                     /gene="ydhK"
                     /locus_tag="BSU_05790"
                     /old_locus_tag="BSU05790"
     downshifts      607064
                     /Source="Nicolas_upshifts"
                     /id="D281"
                     /incds=0
                     /nref=62
                     /ntot=212
                     /MaxReadThrough="1.07295"
                     /MaxDrop="7.27889"
                     /score="30.3859931"
                     /energy="-11.4"
                     /TU="U452"
                     /idTUdmin="U451"
                     /TUdmin="-4"
                     /isTUend="TRUE"
     CDS             complement(607093..608259)
                     /gene="pbuE"
                     /locus_tag="BSU_05800"
                     /old_locus_tag="BSU05800"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12923093, 15849754, 16850406, 17935948, 25573585"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12923093, 15849754,
                     16850406, 17935948, 25573585; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine efflux transporter"
                     /protein_id="NP_388461.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05800"
                     /db_xref="EnsemblGenomes-Tr:CAB12399"
                     /db_xref="GOA:Q797E3"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12189"
                     /db_xref="UniProtKB/Swiss-Prot:Q797E3"
                     /translation="MNFKVFLLAASTIAVGLVELIVGGILPQIANDLDISIVSAGQLI
                     SVFALGYAVSGPLLLALTAKIERKRLYLIALFVFFLSNLVAYFSPNFATLMVSRVLAA
                     MSTGLIVVLSLTIAPKIVAPEYRARAIGIIFMGFSSAIALGVPLGILISDSFGWRILF
                     LGIGLLALISMLIISIFFERIPAEKMIPFREQLKTIGNLKIASSHLVTMFTLAGHYTL
                     YAYFAPFLEETLHLSSFWVSICYFLFGISAVCGGPFGGALSDRLGSFKSILLVTGSFA
                     IIMFLLPLSTSSMIFFLPVMVIWGLLSWSLAPAQQSYLIEIAPDSSDIQQSFNTSALQ
                     VGIALGSAIGGVVLDQTGTVVSTAWCGGSIVIIAVLFAFISLTRPVQTAKKSSL*"
     gene            complement(607093..608259)
                     /gene="pbuE"
                     /locus_tag="BSU_05800"
                     /old_locus_tag="BSU05800"
     downshifts      complement(607122)
                     /Source="Nicolas_upshifts"
                     /id="D282"
                     /incds=0
                     /nref=40
                     /ntot=58
                     /MaxReadThrough="2.22188"
                     /MaxDrop="4.89202"
                     /score="36.362851"
                     /energy="-12.4"
                     /TU="NA"
                     /idTUdmin="U453"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_RNA        complement(608314..608414)
                     /gene="aswA"
                     /locus_tag="BSU_misc_RNA_8"
                     /product="adenine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:14718920, 16201765, 19603494, 20022916, 21283784,
                     23087247, 25573585"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14718920, 16201765,
                     19603494, 20022916, 21283784, 23087247, 25573585; Product
                     type n: RNA"
     gene            complement(608314..608414)
                     /gene="aswA"
                     /locus_tag="BSU_misc_RNA_8"
     downshifts      complement(608355)
                     /Source="Nicolas_upshifts"
                     /id="D283"
                     /incds=0
                     /nref=38
                     /ntot=127
                     /MaxReadThrough="5.85661"
                     /MaxDrop="6.06248"
                     /score="33.0784595"
                     /energy="-19.4"
                     /TU="U453"
                     /idTUdmin="U453"
                     /TUdmin="-1233"
                     /isTUend="FALSE"
     promotor_-10    complement(608424..608443)
                     /Source="Nicolas_upshift_promotors"
                     /id="U453"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95104895104895"
                     /psig=1
                     /xcortree=2453
                     /SigmaFactorBS="tatttttttccggttcaccgttttataaatttttcTATGGaa
                     gattcattcataaTGTGGTACACTCATCAACGGaaacgaatcaattaaatagctatta
                     t"
                     /listShort="NA, pbuE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(608438)
                     /Source="Nicolas_upshifts"
                     /id="U453"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95104895104895"
                     /psig=1
                     /xcortree=2453
                     /SigmaFactorBS="tatttttttccggttcaccgttttataaatttttcTATGGaa
                     gattcattcataaTGTGGTACACTCATCAACGGaaacgaatcaattaaatagctatta
                     t"
                     /listShort="NA, pbuE"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(608459..608463)
                     /Source="Nicolas_upshift_promotors"
                     /id="U453"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95104895104895"
                     /psig=1
                     /xcortree=2453
                     /SigmaFactorBS="tatttttttccggttcaccgttttataaatttttcTATGGaa
                     gattcattcataaTGTGGTACACTCATCAACGGaaacgaatcaattaaatagctatta
                     t"
                     /listShort="NA, pbuE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    608522..608529
                     /Source="Nicolas_upshift_promotors"
                     /id="U454"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig="0.999000999001"
                     /xcortree=1575
                     /SigmaFactorBS="aaaaaaatatgattatatttattttataaaagTATAGACAtt
                     taaaattaaatGACTATAATAATCAATGTAAgcgttttaataacaggggggatagcag
                     t"
                     /listShort="gmuB, gmuA, gmuC, gmuD, S203, gmuR, gmuE,
                     gmuF, gmuG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    608543..608562
                     /Source="Nicolas_upshift_promotors"
                     /id="U454"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig="0.999000999001"
                     /xcortree=1575
                     /SigmaFactorBS="aaaaaaatatgattatatttattttataaaagTATAGACAtt
                     taaaattaaatGACTATAATAATCAATGTAAgcgttttaataacaggggggatagcag
                     t"
                     /listShort="gmuB, gmuA, gmuC, gmuD, S203, gmuR, gmuE,
                     gmuF, gmuG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        608550
                     /Source="Nicolas_upshifts"
                     /id="U454"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig="0.999000999001"
                     /xcortree=1575
                     /SigmaFactorBS="aaaaaaatatgattatatttattttataaaagTATAGACAtt
                     taaaattaaatGACTATAATAATCAATGTAAgcgttttaataacaggggggatagcag
                     t"
                     /listShort="gmuB, gmuA, gmuC, gmuD, S203, gmuR, gmuE,
                     gmuF, gmuG"
                     /GFF_Attribute="listLong"
     CDS             608590..608901
                     /gene="gmuB"
                     /locus_tag="BSU_05810"
                     /old_locus_tag="BSU05810"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 18177310; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligo-alpha-mannoside phosphotransferase system
                     enzyme IIB"
                     /protein_id="NP_388462.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05810"
                     /db_xref="EnsemblGenomes-Tr:CAB12400"
                     /db_xref="GOA:O05505"
                     /db_xref="InterPro:IPR003501"
                     /db_xref="InterPro:IPR013012"
                     /db_xref="InterPro:IPR036095"
                     /db_xref="SubtiList:BG12190"
                     /db_xref="UniProtKB/Swiss-Prot:O05505"
                     /translation="MKKILLACSSGMSTSLLVTKMKEYAQSIGEEAEIWAVGQDKAKE
                     DMRKADAVLIGPQMSFLKSELQKEADQYNIQVEVIDMMAYGMADGKKAYEQALSLMVN
                     Q*"
     gene            608590..608901
                     /gene="gmuB"
                     /locus_tag="BSU_05810"
                     /old_locus_tag="BSU05810"
     CDS             608901..609233
                     /gene="gmuA"
                     /locus_tag="BSU_05820"
                     /old_locus_tag="BSU05820"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligo-alpha-mannoside phosphotransferase system
                     enzyme IIA"
                     /protein_id="NP_388463.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05820"
                     /db_xref="EnsemblGenomes-Tr:CAB12401"
                     /db_xref="GOA:O05506"
                     /db_xref="InterPro:IPR003188"
                     /db_xref="InterPro:IPR036542"
                     /db_xref="SubtiList:BG12191"
                     /db_xref="UniProtKB/Swiss-Prot:O05506"
                     /translation="MEQMKITNLTDEQISFQLILHSGNARSCIIQSLRAYKEGKKDEA
                     DALIAKAEQDLSAAHDIHFQMIQKESGGEATAFSLLLMHAEDHLMSTLSMKELVKEML
                     DLFKTKNI*"
     gene            608901..609233
                     /gene="gmuA"
                     /locus_tag="BSU_05820"
                     /old_locus_tag="BSU05820"
     CDS             609252..610580
                     /gene="gmuC"
                     /locus_tag="BSU_05830"
                     /old_locus_tag="BSU05830"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16850406,
                     18177310; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligo-alpha-mannoside phosphotransferase system
                     enzyme IIC"
                     /protein_id="NP_388464.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05830"
                     /db_xref="EnsemblGenomes-Tr:CAB12402"
                     /db_xref="GOA:O05507"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR004501"
                     /db_xref="InterPro:IPR004796"
                     /db_xref="SubtiList:BG12192"
                     /db_xref="UniProtKB/Swiss-Prot:O05507"
                     /translation="MFEKISQFLVPIAGRLNNNRYLQVLRDAFMLAFPLTIFGSIFVV
                     LTNLPFLNKIMNASMLTSFQSHFGIASTATMGIMSVFVVFGIGYYLSKSYQVEAVFGG
                     AIALVSFLLLTPFIIQPETGDAITGVIPVDRLGAKGMFLGMITAFLSGEIYRRIVQKN
                     LTIKMPAGVPPAVAKSFAALIPAFITLTVFLLINVMVTLFFKTNMHDVIYHAIQAPLV
                     GLGSGIIPTLIAVFFIQILWFFGLHGQIIINSVMDPIWNTLQVENLSAYTAGKEIPHI
                     ISKPFMEIYTVGMGGTGMTLAIVFTILIFMKSRQMKQVSKLGLAPGIFNVNEPIIFGL
                     PIVMNPIIIVPWVLAPMVVTLVTYLAMSAGLVPPPTGVTVPWTVPLFINGIMATNSIM
                     GGVMQLINLLIVFVIWFPFLKAMDKLNLAKEKEQAVQETAAQQNDNSIKM*"
     gene            609252..610580
                     /gene="gmuC"
                     /locus_tag="BSU_05830"
                     /old_locus_tag="BSU05830"
     CDS             610598..611995
                     /gene="gmuD"
                     /locus_tag="BSU_05840"
                     /old_locus_tag="BSU05840"
                     /EC_number="3.2.1.86"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14652714, 15139916, 18177310"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14652714, 15139916,
                     18177310; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="mannoside-phospho-beta-d-glucosidase"
                     /protein_id="NP_388465.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05840"
                     /db_xref="EnsemblGenomes-Tr:CAB12403"
                     /db_xref="GOA:O05508"
                     /db_xref="InterPro:IPR001360"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR018120"
                     /db_xref="SubtiList:BG12193"
                     /db_xref="UniProtKB/Swiss-Prot:O05508"
                     /translation="MAHTEQYRFPKDFWWGSSASATQMEGAADRDGKGQNIWDYWFEK
                     EPHRFFDHVGPADTSQFYDNYKEDIRLMKELGHNSFRMSISWSRLIPNGTGEINDKAA
                     DFYNNVIDELIANGIEPFVNLFHFDMPMALQKIGGWVNRETVDAYENYARTCFRLFGG
                     RVKKWFTHNEPIVPVEGGYLYDFHYPNKVDFKEAVQVGFHTMLSSARAIQAYREMKQD
                     GKIGIILNLTPSYPRSSHPADVKAGEIADAFFNRSFLDPSVKGEFPKELVDILKHEGF
                     MPDYNAEDLDIIKKNTVDLLGVNYYQPRRVKAKEHLPNPDAPFLPDRYFDPYVMPGRK
                     MNPHRGWEIYEKGVYDILINLKENYGNIECFISENGMGVEGEERFRDEQGIIQDDYRI
                     EFIKEHLKWIHRAIQEGSNVKGYHLWTFMDNWSWTNAYKNRYGFVSVNLEKDGERTVK
                     KSGKWFKEVAEHSGF*"
     gene            610598..611995
                     /gene="gmuD"
                     /locus_tag="BSU_05840"
                     /old_locus_tag="BSU05840"
     S_feature       611996..612082
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_630028_630114"
                     /HighExp="G150, T0.30H, T1.0H, M40t90, T1.30H, Mt0, M0t90,
                     Lbexp, dia0, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S203"
     promotor_-35    612060..612067
                     /Source="Nicolas_upshift_promotors"
                     /id="U455"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.74025974025974"
                     /psig="0.997002997002997"
                     /xcortree=640
                     /SigmaFactorBS="aatcatcataacgaatagagatgacgaaaatccgcaACATTG
                     ATgaaatagggaaaaGAACTTATGATATCCGTAAAagcttatgtgatatcaaacagct
                     g"
                     /listShort="gmuR, gmuE, gmuF, gmuG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    612081..612100
                     /Source="Nicolas_upshift_promotors"
                     /id="U455"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.74025974025974"
                     /psig="0.997002997002997"
                     /xcortree=640
                     /SigmaFactorBS="aatcatcataacgaatagagatgacgaaaatccgcaACATTG
                     ATgaaatagggaaaaGAACTTATGATATCCGTAAAagcttatgtgatatcaaacagct
                     g"
                     /listShort="gmuR, gmuE, gmuF, gmuG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        612084
                     /Source="Nicolas_upshifts"
                     /id="U455"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.74025974025974"
                     /psig="0.997002997002997"
                     /xcortree=640
                     /SigmaFactorBS="aatcatcataacgaatagagatgacgaaaatccgcaACATTG
                     ATgaaatagggaaaaGAACTTATGATATCCGTAAAagcttatgtgatatcaaacagct
                     g"
                     /listShort="gmuR, gmuE, gmuF, gmuG"
                     /GFF_Attribute="listLong"
     CDS             612138..612851
                     /gene="gmuR"
                     /locus_tag="BSU_05850"
                     /old_locus_tag="BSU05850"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:18177310"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 18177310; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (GntR family)"
                     /protein_id="NP_388466.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05850"
                     /db_xref="EnsemblGenomes-Tr:CAB12404"
                     /db_xref="GOA:O05509"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR011663"
                     /db_xref="InterPro:IPR028978"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12194"
                     /db_xref="UniProtKB/Swiss-Prot:O05509"
                     /translation="MNKYEIIANEMRNRIKNNVYPIDQPIPDEVSLAKEFNSSRMTMK
                     RALDNLVAEGLLFRKRGHGTFIIQSAIQDDHVHVVSNEILGLTNLLKDKKIKSKVIQF
                     EVQFPTEEVAAHLSIDQKTPVYYVVRLRIVEGEPYVLEKTYMPTHLIPGINDDVLHDS
                     IYNHITNVLQLKIAGTHRKIRACKSDHIDQQHLGCKQDDPILEVEHVGFLDTGIPFEY
                     SFSRHRHDKFVVTSVNIRR*"
     gene            612138..612851
                     /gene="gmuR"
                     /locus_tag="BSU_05850"
                     /old_locus_tag="BSU05850"
     CDS             612880..613779
                     /gene="gmuE"
                     /locus_tag="BSU_05860"
                     /old_locus_tag="BSU05860"
                     /EC_number="2.7.1.4"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15018644, 18177310, 21185308"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15018644, 18177310,
                     21185308; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK fructokinase; glucomannan utilization
                     protein E"
                     /protein_id="NP_388467.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05860"
                     /db_xref="EnsemblGenomes-Tr:CAB12405"
                     /db_xref="GOA:O05510"
                     /db_xref="InterPro:IPR000600"
                     /db_xref="PDB:1XC3"
                     /db_xref="PDB:3LM9"
                     /db_xref="PDB:3OHR"
                     /db_xref="SubtiList:BG12195"
                     /db_xref="UniProtKB/Swiss-Prot:O05510"
                     /translation="MLGGIEAGGTKFVCAVGREDGTIIDRIEFPTKMPDETIEKVIQY
                     FSQFSLQAIGIGSFGPVDNDKTSQTYGTITATPKAGWRHYPFLQTVKNEMKIPVGFST
                     DVNAAALGEFLFGEAKGLDSCLYITIGTGIGAGAIVEGRLLQGLSHPEMGHIYIRRHP
                     DDVYQGKCPYHGDCFEGLASGPAIEARWGKKAADLSDIAQVWELEGYYIAQALAQYIL
                     ILAPKKIILGGGVMQQKQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAG
                     IIGTLVLAHQALQAEAASGEVRS*"
     gene            612880..613779
                     /gene="gmuE"
                     /locus_tag="BSU_05860"
                     /old_locus_tag="BSU05860"
     CDS             613776..614723
                     /gene="gmuF"
                     /locus_tag="BSU_05870"
                     /old_locus_tag="BSU05870"
                     /EC_number="5.3.1.8"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 10704478, 18177310,
                     3017192; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohexomutase; cupin family"
                     /protein_id="NP_388468.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05870"
                     /db_xref="EnsemblGenomes-Tr:CAB12406"
                     /db_xref="GOA:O05511"
                     /db_xref="InterPro:IPR001250"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR014628"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="SubtiList:BG12196"
                     /db_xref="UniProtKB/Swiss-Prot:O05511"
                     /translation="MTHPLFLEPVFKERLWGGTKLRDAFGYAIPSQKTGECWAVSAHA
                     HGSSSVKNGPLAGKTLDQVWKDHPEIFGFPDGKVFPLLVKLLDANMDLSVQVHPDDDY
                     AKLHENGDLGKTECWYIIDCKDDAELILGHHASTKEEFKQRIESGDWNGLLRRIKIKP
                     GDFFYVPSGTLHALCKGTLVLEIQQNSDTTYRVYDYDRCNDQGQKRTLHIEKAMEVIT
                     IPHIDKVHTPEVKEVGNAEIIVYVQSDYFSVYKWKISGRAAFPSYQTYLLGSVLSGSG
                     RIINNGIQYECNAGSHFILPAHFGEFTIEGTCEFMISHP*"
     gene            613776..614723
                     /gene="gmuF"
                     /locus_tag="BSU_05870"
                     /old_locus_tag="BSU05870"
     CDS             614742..615830
                     /gene="gmuG"
                     /locus_tag="BSU_05880"
                     /old_locus_tag="BSU05880"
                     /EC_number="3.2.1.78"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2694961, 7727534, 18177310, 28101462, 25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2694961, 7727534,
                     18177310, 28101462, 25355936; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="exported mannan endo-1,4-beta-mannosidase"
                     /protein_id="NP_388469.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05880"
                     /db_xref="EnsemblGenomes-Tr:CAB12407"
                     /db_xref="GOA:O05512"
                     /db_xref="InterPro:IPR000805"
                     /db_xref="InterPro:IPR016714"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR022790"
                     /db_xref="PDB:2WHK"
                     /db_xref="PDB:3CBW"
                     /db_xref="SubtiList:BG12197"
                     /db_xref="UniProtKB/Swiss-Prot:O05512"
                     /translation="MFKKHTISLLIIFLLASAVLAKPIEAHTVSPVNPNAQQTTKTVM
                     NWLAHLPNRTENRVLSGAFGGYSHDTFSMAEADRIRSATGQSPAIYGCDYARGWLETA
                     NIEDSIDVSCNGDLMSYWKNGGIPQISLHLANPAFQSGHFKTPITNDQYKKILDSSTV
                     EGKRLNAMLSKIADGLQELENQGVPVLFRPLHEMNGEWFWWGLTSYNQKDNERISLYK
                     QLYKKIYHYMTDTRGLDHLIWVYSPDANRDFKTDFYPGASYVDIVGLDAYFQDAYSIN
                     GYDQLTALNKPFAFTEVGPQTANGSFDYSLFINAIKQKYPKTIYFLAWNDEWSAAVNK
                     GASALYHDSWTLNKGEIWNGDSLTPIVE*"
     gene            614742..615830
                     /gene="gmuG"
                     /locus_tag="BSU_05880"
                     /old_locus_tag="BSU05880"
     downshifts      615824
                     /Source="Nicolas_upshifts"
                     /id="D284"
                     /incds=0
                     /nref=1
                     /ntot=17
                     /MaxReadThrough="1.56881"
                     /MaxDrop="2.87204"
                     /score="7.63230089"
                     /energy="-5.4"
                     /TU="NA"
                     /idTUdmin="U454"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(615891..616619)
                     /gene="ydhUc"
                     /locus_tag="BSU_05890"
                     /old_locus_tag="BSU05890"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Mn catalase fragment; C-terminal part of YhdU"
                     /db_xref="SubtiList:BG12198"
                     /translation="FFQSSNFRGKQKQYRDLLRGIFLEEIAHVELVQNTINALLDESG
                     GEGVGSQGTDQAPLDEAVKHANPHHYIIGAQSSLPVDAGGNPWNGSWVYNHGNLITDL
                     LDNLLLESTGVLQKTRIYEMSSNQTFRETLAFLIVRDNAHQNAFAKALETLGVEWAKL
                     LPVPNYDINKYPECRKYVELGYHNTHFNFRLDETRISEIYQGKSPSRNGGELQVIDPP
                     AGFPVPVLPEIPNEHSPGLGDMNA*"
     gene            complement(615891..616619)
                     /gene="ydhUc"
                     /locus_tag="BSU_05890"
                     /old_locus_tag="BSU05890"
                     /pseudo
     downshifts      complement(615941)
                     /Source="Nicolas_upshifts"
                     /id="D285"
                     /incds=0
                     /nref=13
                     /ntot=37
                     /MaxReadThrough="1.1517"
                     /MaxDrop="5.0503"
                     /score="0.317473754"
                     /energy="-17.6"
                     /TU="NA"
                     /idTUdmin="U456"
                     /TUdmin=3
                     /isTUend="TRUE"
     CDS             complement(616550..616744)
                     /gene="ydhUn"
                     /locus_tag="BSU_05899"
                     /old_locus_tag="BSU05899"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Mn catalase fragment; N-terminal part of YhdU"
                     /translation="MYYYKEELINIIKPDKPDPAAAKVLQEILGGHYGEMRTMMQFFS
                     KALISEESRNSTAICFAAFF*"
     gene            complement(616550..616744)
                     /gene="ydhUn"
                     /locus_tag="BSU_05899"
                     /old_locus_tag="BSU05899"
                     /pseudo
     promotor_-10    complement(616777..616788)
                     /Source="Nicolas_upshift_promotors"
                     /id="U456"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=907
                     /SigmaFactorBS="ttattttcttctttcacgccttcccatgcttatcatgTATAT
                     ATtttatctcatcttACAAATAATATAagaaaatctcttaagaagaaatgaggcgtgt
                     t"
                     /listShort="ydhU, ydhU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(616785)
                     /Source="Nicolas_upshifts"
                     /id="U456"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=907
                     /SigmaFactorBS="ttattttcttctttcacgccttcccatgcttatcatgTATAT
                     ATtttatctcatcttACAAATAATATAagaaaatctcttaagaagaaatgaggcgtgt
                     t"
                     /listShort="ydhU, ydhU"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(616802..616808)
                     /Source="Nicolas_upshift_promotors"
                     /id="U456"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=907
                     /SigmaFactorBS="ttattttcttctttcacgccttcccatgcttatcatgTATAT
                     ATtttatctcatcttACAAATAATATAagaaaatctcttaagaagaaatgaggcgtgt
                     t"
                     /listShort="ydhU, ydhU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    616863..616870
                     /Source="Nicolas_upshift_promotors"
                     /id="U457"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=2625
                     /SigmaFactorBS="cgtgaaagaagaaaataaaaaaatacaggaaaagtGTTGACC
                     AaataaaacaggcaTGGTATATTATTAAACGTCGctgatgaacagcgtgaaacaaaac
                     a"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    616884..616903
                     /Source="Nicolas_upshift_promotors"
                     /id="U457"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=2625
                     /SigmaFactorBS="cgtgaaagaagaaaataaaaaaatacaggaaaagtGTTGACC
                     AaataaaacaggcaTGGTATATTATTAAACGTCGctgatgaacagcgtgaaacaaaac
                     a"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_no_box 616886..616986
                     /Source="Nicolas_upshift_promotors"
                     /id="U458"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.604395604395604"
                     /psig="0.0919080919080919"
                     /xcortree=1636
                     /SigmaFactorBS="gtatattattaaacgtcgctgatgaacagcgtgaaacaaaac
                     agaaaaacaaaaaagttttcctaaggtgtttacaagattttaaaaatgtgtataataa
                     g"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        616888
                     /Source="Nicolas_upshifts"
                     /id="U457"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=2625
                     /SigmaFactorBS="cgtgaaagaagaaaataaaaaaatacaggaaaagtGTTGACC
                     AaataaaacaggcaTGGTATATTATTAAACGTCGctgatgaacagcgtgaaacaaaac
                     a"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
     downshifts      complement(616934)
                     /Source="Nicolas_upshifts"
                     /id="D286"
                     /incds=0
                     /nref=1
                     /ntot=54
                     /MaxReadThrough="2.24619"
                     /MaxDrop="4.20389"
                     /score="11.9939391"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U456"
                     /TUdmin="-990"
                     /isTUend="FALSE"
     upshifts        616946
                     /Source="Nicolas_upshifts"
                     /id="U458"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.604395604395604"
                     /psig="0.0919080919080919"
                     /xcortree=1636
                     /SigmaFactorBS="gtatattattaaacgtcgctgatgaacagcgtgaaacaaaac
                     agaaaaacaaaaaagttttcctaaggtgtttacaagattttaaaaatgtgtataataa
                     g"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
     promotor_-35    616954..616961
                     /Source="Nicolas_upshift_promotors"
                     /id="U459"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.96003996003996"
                     /xcortree=1634
                     /SigmaFactorBS="aaaaacaaaaaagttttcctaaggTGTTTACAagattttaaa
                     aatGTGTATAATAAGAAAAGTCGaattgaaaaagattcgaaaaaacattaaaaaactt
                     c"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    616975..616994
                     /Source="Nicolas_upshift_promotors"
                     /id="U459"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.96003996003996"
                     /xcortree=1634
                     /SigmaFactorBS="aaaaacaaaaaagttttcctaaggTGTTTACAagattttaaa
                     aatGTGTATAATAAGAAAAGTCGaattgaaaaagattcgaaaaaacattaaaaaactt
                     c"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       616990..617077
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_635022_635109"
                     /HighExp="LBGstat, C30, Cold, Heat, Oxctl, T-1.10H,
                     T-0.40H, T-1.40H, UNK1, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, Sig-, SigA"
                     /TUshortPSig="0.96, 0.0919, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S204"
     upshifts        616990
                     /Source="Nicolas_upshifts"
                     /id="U459"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.418581418581419"
                     /psig="0.96003996003996"
                     /xcortree=1634
                     /SigmaFactorBS="aaaaacaaaaaagttttcctaaggTGTTTACAagattttaaa
                     aatGTGTATAATAAGAAAAGTCGaattgaaaaagattcgaaaaaacattaaaaaactt
                     c"
                     /listShort="S204, trnE-Arg, trnE-Gly, rrnE-16S"
                     /GFF_Attribute="listLong"
     tRNA            617078..617154
                     /gene="trnE-Arg"
                     /locus_tag="BSU_tRNA_79"
                     /product="tRNA-Arg"
                     /inference="profile:tRNAscan:1.23"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            617078..617154
                     /gene="trnE-Arg"
                     /locus_tag="BSU_tRNA_79"
     tRNA            617168..617241
                     /gene="trnE-Gly"
                     /locus_tag="BSU_tRNA_80"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gly(UCC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            617168..617241
                     /gene="trnE-Gly"
                     /locus_tag="BSU_tRNA_80"
     rRNA            617401..618955
                     /gene="rrnE-16S"
                     /locus_tag="BSU_rRNA_30"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            617401..618955
                     /gene="rrnE-16S"
                     /locus_tag="BSU_rRNA_30"
     rRNA            619123..622050
                     /gene="rrnE-23S"
                     /locus_tag="BSU_rRNA_12"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            619123..622050
                     /gene="rrnE-23S"
                     /locus_tag="BSU_rRNA_12"
     rRNA            622106..622222
                     /gene="rrnE-5S"
                     /locus_tag="BSU_rRNA_13"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            622106..622222
                     /gene="rrnE-5S"
                     /locus_tag="BSU_rRNA_13"
     tRNA            622236..622312
                     /gene="trnE-Met"
                     /locus_tag="BSU_tRNA_21"
                     /product="tRNA-Met"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Met(CAU); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            622236..622312
                     /gene="trnE-Met"
                     /locus_tag="BSU_tRNA_21"
     tRNA            622373..622449
                     /gene="trnE-Asp"
                     /locus_tag="BSU_tRNA_22"
                     /product="tRNA-Asp"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Asp(GUC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            622373..622449
                     /gene="trnE-Asp"
                     /locus_tag="BSU_tRNA_22"
     downshifts      622446
                     /Source="Nicolas_upshifts"
                     /id="D287"
                     /incds=0
                     /nref=38
                     /ntot=211
                     /MaxReadThrough="6.00554"
                     /MaxDrop="5.14761"
                     /score="7.63230089"
                     /energy="-5.4"
                     /TU="NA"
                     /idTUdmin="U460"
                     /TUdmin="-3784"
                     /isTUend="FALSE"
     promotor_-35    622550..622554
                     /Source="Nicolas_upshift_promotors"
                     /id="U460"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2461
                     /SigmaFactorBS="tggtgtcatagccaagctttctttatatcgggaacaTCTTGg
                     atattccagcaaaaTTCGATAAACTAGGAAGAGCacaaataggcataagcagggttga
                     a"
                     /listShort="thiL, ydiB, ydiC, rimI, gcp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    622570..622589
                     /Source="Nicolas_upshift_promotors"
                     /id="U460"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2461
                     /SigmaFactorBS="tggtgtcatagccaagctttctttatatcgggaacaTCTTGg
                     atattccagcaaaaTTCGATAAACTAGGAAGAGCacaaataggcataagcagggttga
                     a"
                     /listShort="thiL, ydiB, ydiC, rimI, gcp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        622574
                     /Source="Nicolas_upshifts"
                     /id="U460"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2461
                     /SigmaFactorBS="tggtgtcatagccaagctttctttatatcgggaacaTCTTGg
                     atattccagcaaaaTTCGATAAACTAGGAAGAGCacaaataggcataagcagggttga
                     a"
                     /listShort="thiL, ydiB, ydiC, rimI, gcp"
                     /GFF_Attribute="listLong"
     CDS             622630..623607
                     /gene="thiL"
                     /locus_tag="BSU_05900"
                     /old_locus_tag="BSU05900"
                     /EC_number="2.7.4.16"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16291685, 26443755; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-monophosphate kinase"
                     /protein_id="NP_388471.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05900"
                     /db_xref="EnsemblGenomes-Tr:CAB12409"
                     /db_xref="GOA:O05514"
                     /db_xref="InterPro:IPR006283"
                     /db_xref="InterPro:IPR010918"
                     /db_xref="InterPro:IPR016188"
                     /db_xref="InterPro:IPR036676"
                     /db_xref="InterPro:IPR036921"
                     /db_xref="SubtiList:BG10693"
                     /db_xref="UniProtKB/Swiss-Prot:O05514"
                     /translation="MDEFDLIHSITPRTIHHSSVDVGIGDDAALYTAKHGVQEIVCVD
                     TMVEDVHFKLHYSSPEDIGYKALAVNISDIAAMGGIPKFYLVSLAVPSKWTESEIKAM
                     YEGMNELAKLYHMDLIGGDTVSTADKLVVTVTVIGEIEKGQACLRSLAKPNDIVFVTG
                     EIGSSAAGLSLLLEETNPQNSSVETDYFIHRHKRPEPRVSVGRLCSIFKRAALNDVSD
                     GLASELNEIAEASCVSIEIVESMLPIHSDLPKLHPNWKEWALFGGEDFELTGTVSNEE
                     WEVLKQECAALHLPITKIGYVREKTKSKVILKTDQTSMILEKKGYNHFK*"
     gene            622630..623607
                     /gene="thiL"
                     /locus_tag="BSU_05900"
                     /old_locus_tag="BSU05900"
     CDS             623622..624098
                     /gene="tsaE"
                     /locus_tag="BSU_05910"
                     /old_locus_tag="BSU05910"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17005971, 19246765, 19376873, 19578062,
                     20701780, 20824107, 21183954, 21285948, 22378793,
                     23072323"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17005971,
                     19246765, 19376873, 19578062, 20701780, 20824107,
                     21183954, 21285948, 22378793, 23072323; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(NNU) t(6)A37 threonylcarbamoyladenosine
                     modification; ADP binding protein"
                     /protein_id="NP_388472.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05910"
                     /db_xref="EnsemblGenomes-Tr:CAB12410"
                     /db_xref="GOA:O05515"
                     /db_xref="InterPro:IPR003442"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12199"
                     /db_xref="UniProtKB/Swiss-Prot:O05515"
                     /translation="MKQLKWRTVNPEETKAIAKLTAAFAKPGDVLTLEGDLGAGKTTF
                     TKGFAEGLGITRIVNSPTFTIIKEYNDGVLPLYHMDVYRMEDESEDLGLDEYFHGQGV
                     CLVEWAHLIEEQLPQERLQIVIKRAGDDEREITFTAVGNRYEMLCEELSRHDNISN*"
     gene            623622..624098
                     /gene="tsaE"
                     /locus_tag="BSU_05910"
                     /old_locus_tag="BSU05910"
     CDS             624079..624768
                     /gene="tsaB"
                     /locus_tag="BSU_05920"
                     /old_locus_tag="BSU05920"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 17005971, 20944216, 19376873, 19578062,
                     20701780, 20824107, 21183954, 21285948, 22378793,
                     23072323"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 17005971,
                     20944216, 19376873, 19578062, 20701780, 20824107,
                     21183954, 21285948, 22378793, 23072323; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(NNU) t(6)A37 threonylcarbamoyladenosine
                     modification; protease involved in TsaD function"
                     /protein_id="NP_388473.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05920"
                     /db_xref="EnsemblGenomes-Tr:CAB12411"
                     /db_xref="GOA:O05516"
                     /db_xref="InterPro:IPR000905"
                     /db_xref="InterPro:IPR022496"
                     /db_xref="SubtiList:BG12200"
                     /db_xref="UniProtKB/Swiss-Prot:O05516"
                     /translation="MTILAIDTSNYTLGIALLREDTVIAEYITYLKKNHSVRAMPAVH
                     SLLNDCDMAPQDLSKIVVAKGPGSYTGVRIGVTLAKTLAWSLDIPISAVSSLETLAAN
                     GRHFDGLISPIFDARRGQVYTGLYQYKNGLLEQVVPDQNVMLADWLEMLKEKDRPVLF
                     LGHDTSLHKQMIEDVLGTKGFIGTAAQHNPRPSELAFLGKEKEAADVHGLVPDYLRLA
                     EAEAKWIESQK*"
     gene            624079..624768
                     /gene="tsaB"
                     /locus_tag="BSU_05920"
                     /old_locus_tag="BSU05920"
     CDS             624778..625233
                     /gene="rimI"
                     /locus_tag="BSU_05930"
                     /old_locus_tag="BSU05930"
                     /EC_number="2.3.1.267"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 2828880; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18 alanine
                     N-acetyltransferase"
                     /protein_id="NP_388474.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05930"
                     /db_xref="EnsemblGenomes-Tr:CAB12412"
                     /db_xref="GOA:O05517"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR006464"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG12201"
                     /db_xref="UniProtKB/Swiss-Prot:O05517"
                     /translation="MKTKAAVRNMRLEDIDHVYEIEASSFTSPWTKDSFYHELLENPY
                     AHYLVIEKDGHLAGYCGIWIVMDDAQITNIAIKPEYRGQSLGETLFRSAVELCKEKDA
                     RRLSLEVRVSNHPAQGLYKKFGMQPGGIRKNYYTDNGEDALIMWVTINE*"
     gene            624778..625233
                     /gene="rimI"
                     /locus_tag="BSU_05930"
                     /old_locus_tag="BSU05930"
     CDS             625226..626266
                     /gene="tsaD"
                     /locus_tag="BSU_05940"
                     /old_locus_tag="BSU05940"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11073929, 12682299, 9743119,
                     20824107, 21625506, 21873492, 19376873, 19578062,
                     20701780, 20824107, 21183954, 21285948, 22378793; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(NNU) t(6)A37 threonylcarbamoyladenosine
                     modification; glycation binding protein"
                     /protein_id="NP_388475.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05940"
                     /db_xref="EnsemblGenomes-Tr:CAB12413"
                     /db_xref="GOA:O05518"
                     /db_xref="InterPro:IPR000905"
                     /db_xref="InterPro:IPR017860"
                     /db_xref="InterPro:IPR017861"
                     /db_xref="InterPro:IPR022450"
                     /db_xref="SubtiList:BG12202"
                     /db_xref="UniProtKB/Swiss-Prot:O05518"
                     /translation="MSEQKDMYVLGIETSCDETAAAIVKNGKEIISNVVASQIESHKR
                     FGGVVPEIASRHHVEQITLVIEEAFRKAGMTYSDIDAIAVTEGPGLVGALLIGVNAAK
                     ALSFAYNIPLVGVHHIAGHIYANRLVEDIVFPALALVVSGGHTELVYMKEHGSFEVIG
                     ETLDDAAGEAYDKVARTMGLPYPGGPQIDKLAEKGNDNIPLPRAWLEEGSYNFSFSGL
                     KSAVINTLHNASQKGQEIAPEDLSASFQNSVIDVLVTKTARAAKEYDVKQVLLAGGVA
                     ANRGLRAALEKEFAQHEGITLVIPPLALCTDNAAMIAAAGTIAFEKGIRGAYDMNGQP
                     GLELTSYQSLTR*"
     gene            625226..626266
                     /gene="tsaD"
                     /locus_tag="BSU_05940"
                     /old_locus_tag="BSU05940"
     downshifts      626230
                     /Source="Nicolas_upshifts"
                     /id="D288"
                     /incds=0
                     /nref=39
                     /ntot=222
                     /MaxReadThrough="3.15518"
                     /MaxDrop="4.65228"
                     /score="3.97936019"
                     /energy="-10.1"
                     /TU="NA"
                     /idTUdmin="U460"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(626496..628424)
                     /gene="ydiF"
                     /locus_tag="BSU_05950"
                     /old_locus_tag="BSU05950"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11916677, 16109936,
                     24389466; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative energy-sensing inhibitor of
                     translation"
                     /protein_id="NP_388476.2"
                     /db_xref="EnsemblGenomes-Gn:BSU05950"
                     /db_xref="EnsemblGenomes-Tr:CAB12414"
                     /db_xref="GOA:O05519"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR032524"
                     /db_xref="InterPro:IPR032781"
                     /db_xref="SubtiList:BG12203"
                     /db_xref="UniProtKB/Swiss-Prot:O05519"
                     /translation="MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKST
                     LLKIIAGQLSYEKGEIIKPKDITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMR
                     AMEEKMAAADPGELESIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQV
                     QSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHD
                     RYFLDKVVNQVYEVSRAESKKYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFV
                     DRNLARASTTKRAQSRRKQLERMDVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTI
                     SYENQPPLLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSV
                     GYYDQEQAELTSSKRVLDELWDEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEK
                     ARLALAKLMLQKANFLILDEPTNHLDLDSKEVLENALIDYPGTLLFVSHDRYFINRIA
                     TRVLELSSSHIEEYLGDYDYYTEKKTEQLELEKMNQQEETDKTPATVKSDSKRSYEEE
                     KEWKKKERQRLRRIEEIETTVQTIEENISRNDELLCDPEVYQDHEKVQAIHADNEKLN
                     QELESLLSEWEELSTEED*"
     gene            complement(626496..628424)
                     /gene="ydiF"
                     /locus_tag="BSU_05950"
                     /old_locus_tag="BSU05950"
     downshifts      complement(626513)
                     /Source="Nicolas_upshifts"
                     /id="D289"
                     /incds=0
                     /nref=170
                     /ntot=266
                     /MaxReadThrough="1.32926"
                     /MaxDrop="5.81869"
                     /score="16.702581"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U463"
                     /TUdmin="-9"
                     /isTUend="TRUE"
     misc_feature    628176..628195
                     /Source="Nicolas_upshift_promotors"
                     /id="U461"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.821178821178821"
                     /psig="0.98901098901099"
                     /xcortree=2080
                     /SigmaFactorBS="tccttttccattgcttttaagtggtcaaaaacagtcagcagc
                     tcttctttTATGGTAAGCTTAGAATCCAagccagtatgctgggcgagatatcccattg
                     t"
                     /listShort="S205, S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        628186
                     /Source="Nicolas_upshifts"
                     /id="U461"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.821178821178821"
                     /psig="0.98901098901099"
                     /xcortree=2080
                     /SigmaFactorBS="tccttttccattgcttttaagtggtcaaaaacagtcagcagc
                     tcttctttTATGGTAAGCTTAGAATCCAagccagtatgctgggcgagatatcccattg
                     t"
                     /listShort="S205, S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
     S_feature       628188..628377
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_646220_646409"
                     /HighExp="Diami, H2O2, dia5, Paraq, G135, G180, G150,
                     Cold, dia15, BC"
                     /AntisenseName="ydiF"
                     /AntisenseCor="0.47406689574609401"
                     /AntisenseRegPval="-15.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.989"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S205"
     promotor_-35    628342..628349
                     /Source="Nicolas_upshift_promotors"
                     /id="U462"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.997002997002997"
                     /xcortree=2055
                     /SigmaFactorBS="ctacaatggcgatgcgatcacgaTTTCTGACttccagcttta
                     taTTGTTTAAAATAGTATCAGCaccaaatgatttggacagctgattaacttgtaagat
                     c"
                     /listShort="S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    628363..628382
                     /Source="Nicolas_upshift_promotors"
                     /id="U462"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.997002997002997"
                     /xcortree=2055
                     /SigmaFactorBS="ctacaatggcgatgcgatcacgaTTTCTGACttccagcttta
                     taTTGTTTAAAATAGTATCAGCaccaaatgatttggacagctgattaacttgtaagat
                     c"
                     /listShort="S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       628379..628549
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_646411_646581"
                     /HighExp="Diami, dia5, dia15, H2O2, Etha, G180, G150,
                     Oxctl, Mt0, Paraq"
                     /AntisenseName="ydiF"
                     /AntisenseCor="0.63697451027099605"
                     /AntisenseRegPval="-31.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 0.989"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S206"
     upshifts        628379
                     /Source="Nicolas_upshifts"
                     /id="U462"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.997002997002997"
                     /xcortree=2055
                     /SigmaFactorBS="ctacaatggcgatgcgatcacgaTTTCTGACttccagcttta
                     taTTGTTTAAAATAGTATCAGCaccaaatgatttggacagctgattaacttgtaagat
                     c"
                     /listShort="S206, moaC, rex, tatAY, tatCY"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(628444..628463)
                     /Source="Nicolas_upshift_promotors"
                     /id="U463"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.891108891108891"
                     /psig="0.999000999001"
                     /xcortree=2085
                     /SigmaFactorBS="tttcttctctatgtcttatatggccaatgtatTGTTTGCTga
                     cttctggttcaTAAGCTACACTTAACTTATTatagcagaggtgaaataatatgatgat
                     c"
                     /listShort="ydiF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(628456)
                     /Source="Nicolas_upshifts"
                     /id="U463"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.891108891108891"
                     /psig="0.999000999001"
                     /xcortree=2085
                     /SigmaFactorBS="tttcttctctatgtcttatatggccaatgtatTGTTTGCTga
                     cttctggttcaTAAGCTACACTTAACTTATTatagcagaggtgaaataatatgatgat
                     c"
                     /listShort="ydiF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(628477..628484)
                     /Source="Nicolas_upshift_promotors"
                     /id="U463"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.891108891108891"
                     /psig="0.999000999001"
                     /xcortree=2085
                     /SigmaFactorBS="tttcttctctatgtcttatatggccaatgtatTGTTTGCTga
                     cttctggttcaTAAGCTACACTTAACTTATTatagcagaggtgaaataatatgatgat
                     c"
                     /listShort="ydiF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             628550..629062
                     /gene="moaC"
                     /locus_tag="BSU_05960"
                     /old_locus_tag="BSU05960"
                     /EC_number="4.6.1.17"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10903949, 16632608,
                     18607082, 20606263, 25941396, 26575208; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein C"
                     /protein_id="NP_388477.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05960"
                     /db_xref="EnsemblGenomes-Tr:CAB12415"
                     /db_xref="GOA:O05520"
                     /db_xref="InterPro:IPR002820"
                     /db_xref="InterPro:IPR023045"
                     /db_xref="InterPro:IPR036522"
                     /db_xref="SubtiList:BG12204"
                     /db_xref="UniProtKB/Swiss-Prot:O05520"
                     /translation="MNGFSHFNEQGRAQMVDISEKSSTVRTAAAVSSVHMKNEVYEKI
                     QSHDIGKGDVLAVAQVAGIMAAKQTSNIIPMCHPLSLSGVDISFDWKIKEAEVILHIK
                     AQVKTKGSTGVEMEALTSASVCALTVYDMCKALDKGMVIGPTFLLEKTGGKNGDFKRE
                     LSEYNLEDQK*"
     gene            628550..629062
                     /gene="moaC"
                     /locus_tag="BSU_05960"
                     /old_locus_tag="BSU05960"
     CDS             629059..629706
                     /gene="rex"
                     /locus_tag="BSU_05970"
                     /old_locus_tag="BSU05970"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15231791, 16207915, 17015645, 17322317, 18485070,
                     21402078, 23046954, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15231791, 16207915,
                     17015645, 17322317, 18485070, 21402078, 23046954,
                     26735940; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription repressor of cydABCD and yjlC-ndh
                     expression"
                     /protein_id="NP_388478.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05970"
                     /db_xref="EnsemblGenomes-Tr:CAB12416"
                     /db_xref="GOA:O05521"
                     /db_xref="InterPro:IPR003781"
                     /db_xref="InterPro:IPR009718"
                     /db_xref="InterPro:IPR022876"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2VT2"
                     /db_xref="PDB:2VT3"
                     /db_xref="SubtiList:BG12205"
                     /db_xref="UniProtKB/Swiss-Prot:O05521"
                     /translation="MNKDQSKIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVK
                     VDSATIRRDFSYFGALGKKGYGYNVDYLLSFFRKTLDQDEMTDVILIGVGNLGTAFLH
                     YNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVAAQS
                     ITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYSVLEEIE*"
     gene            629059..629706
                     /gene="rex"
                     /locus_tag="BSU_05970"
                     /old_locus_tag="BSU05970"
     promotor_no_box 629536..629636
                     /Source="Nicolas_upshift_promotors"
                     /id="U464"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="Sig-"
                     /pcomp="0.386613386613387"
                     /psig="0.386613386613387"
                     /xcortree=511
                     /SigmaFactorBS="tccattacagacagattggtcgcattaggaatcaagggaatc
                     cttaattttacgccggcccgtttgaatgtgccggaacacattcgaattcatcatatag
                     a"
                     /listShort="tatAY, tatCY"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        629596
                     /Source="Nicolas_upshifts"
                     /id="U464"
                     /multdbtbs="-"
                     /comp="M2"
                     /sig="Sig-"
                     /pcomp="0.386613386613387"
                     /psig="0.386613386613387"
                     /xcortree=511
                     /SigmaFactorBS="tccattacagacagattggtcgcattaggaatcaagggaatc
                     cttaattttacgccggcccgtttgaatgtgccggaacacattcgaattcatcatatag
                     a"
                     /listShort="tatAY, tatCY"
                     /GFF_Attribute="listLong"
     CDS             629728..629901
                     /gene="tatAY"
                     /locus_tag="BSU_05980"
                     /old_locus_tag="BSU05980"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15187182, 19049517, 22041895, 22544248, 24652282,
                     26239117, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15187182, 19049517,
                     22041895, 22544248, 24652282, 26239117, 22720735; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the twin-arginine pre-protein
                     translocation pathway"
                     /protein_id="NP_388479.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05980"
                     /db_xref="EnsemblGenomes-Tr:CAB12417"
                     /db_xref="GOA:O05522"
                     /db_xref="InterPro:IPR003369"
                     /db_xref="InterPro:IPR006312"
                     /db_xref="SubtiList:BG12206"
                     /db_xref="UniProtKB/Swiss-Prot:O05522"
                     /translation="MPIGPGSLAVIAIVALIIFGPKKLPELGKAAGDTLREFKNATKG
                     LTSDEEEKKKEDQ*"
     gene            629728..629901
                     /gene="tatAY"
                     /locus_tag="BSU_05980"
                     /old_locus_tag="BSU05980"
     CDS             629908..630672
                     /gene="tatCY"
                     /locus_tag="BSU_05990"
                     /old_locus_tag="BSU05990"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11007775, 15187182, 15849754, 16850406, 19049517,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11007775, 15187182,
                     15849754, 16850406, 19049517, 22720735; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the twin-arginine pre-protein
                     translocation pathway"
                     /protein_id="NP_388480.1"
                     /db_xref="EnsemblGenomes-Gn:BSU05990"
                     /db_xref="EnsemblGenomes-Tr:CAB12418"
                     /db_xref="GOA:O05523"
                     /db_xref="InterPro:IPR002033"
                     /db_xref="InterPro:IPR019820"
                     /db_xref="SubtiList:BG12207"
                     /db_xref="UniProtKB/Swiss-Prot:O05523"
                     /translation="MTRMKVNQMSLLEHIAELRKRLLIVALAFVVFFIAGFFLAKPII
                     VYLQETDEAKQLTLNAFNLTDPLYVFMQFAFIIGIVLTSPVILYQLWAFVSPGLYEKE
                     RKVTLSYIPVSILLFLAGLSFSYYILFPFVVDFMKRISQDLNVNQVIGINEYFHFLLQ
                     LTIPFGLLFQMPVILMFLTRLGIVTPMFLAKIRKYAYFTLLVIAALITPPELLSHMMV
                     TVPLLILYEISILISKAAYRKAQKSSAADRDVSSGQ*"
     gene            629908..630672
                     /gene="tatCY"
                     /locus_tag="BSU_05990"
                     /old_locus_tag="BSU05990"
     downshifts      630652
                     /Source="Nicolas_upshifts"
                     /id="D290"
                     /incds=0
                     /nref=151
                     /ntot=251
                     /MaxReadThrough="4.01237"
                     /MaxDrop="6.80817"
                     /score="19.4098216"
                     /energy="-12.7"
                     /TU="NA"
                     /idTUdmin="U461"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(630710..630901)
                     /gene="ydiK"
                     /locus_tag="BSU_06000"
                     /old_locus_tag="BSU06000"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388481.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06000"
                     /db_xref="EnsemblGenomes-Tr:CAB12419"
                     /db_xref="GOA:O05524"
                     /db_xref="InterPro:IPR025426"
                     /db_xref="SubtiList:BG12208"
                     /db_xref="UniProtKB/Swiss-Prot:O05524"
                     /translation="MRNPVVWGMIYFAVGCIFTYLAASSPGSMWSFYSILLMVFAAYN
                     ISISFKMFAFSFKIKKNQK*"
     gene            complement(630710..630901)
                     /gene="ydiK"
                     /locus_tag="BSU_06000"
                     /old_locus_tag="BSU06000"
     downshifts      complement(630727)
                     /Source="Nicolas_upshifts"
                     /id="D291"
                     /incds=0
                     /nref=211
                     /ntot=258
                     /MaxReadThrough="0.81338"
                     /MaxDrop="6.43897"
                     /score="25.5376889"
                     /energy="-12.7"
                     /TU="NA"
                     /idTUdmin="U467"
                     /TUdmin="-21"
                     /isTUend="TRUE"
     CDS             complement(630898..631632)
                     /gene="ydiL"
                     /locus_tag="BSU_06010"
                     /old_locus_tag="BSU06010"
                     /EC_number="3.4.-.-"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protease"
                     /protein_id="NP_388482.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06010"
                     /db_xref="EnsemblGenomes-Tr:CAB12420"
                     /db_xref="GOA:O05525"
                     /db_xref="InterPro:IPR003675"
                     /db_xref="SubtiList:BG12209"
                     /db_xref="UniProtKB/Swiss-Prot:O05525"
                     /translation="MRKQYWFIILTYIIMQFSALIAIPLLFKFGYAGGQPTDENMLHA
                     QGLWSVISFIACLVVVLLILRTVPKETLRNGQKDSIGLSILWAIAGFFIALFSQGIAG
                     SIEYYVFGIGRESENTQAILDVIQAVPLMIIVSSIVGPILEEIIFRKIIFGALYEKTN
                     FFFAGLISSVIFGIVHADLKHLLLYTAMGFTFAFLYARTKRIWVPIFAHLMMNTFVVI
                     MQLEPVRNYLEQQSTQMQLIIGGLFL*"
     gene            complement(630898..631632)
                     /gene="ydiL"
                     /locus_tag="BSU_06010"
                     /old_locus_tag="BSU06010"
     promotor_-35    631290..631295
                     /Source="Nicolas_upshift_promotors"
                     /id="U465"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.952047952047952"
                     /psig="0.952047952047952"
                     /xcortree=1034
                     /SigmaFactorBS="tgcctgaatgacatccagaatcgcttgtgtattttctgATTC
                     TCttccgatgccaaaaACATAATATTCAATAGAGCctgctattccttgagagaaaagg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    631310..631328
                     /Source="Nicolas_upshift_promotors"
                     /id="U465"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.952047952047952"
                     /psig="0.952047952047952"
                     /xcortree=1034
                     /SigmaFactorBS="tgcctgaatgacatccagaatcgcttgtgtattttctgATTC
                     TCttccgatgccaaaaACATAATATTCAATAGAGCctgctattccttgagagaaaagg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        631312
                     /Source="Nicolas_upshifts"
                     /id="U465"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.952047952047952"
                     /psig="0.952047952047952"
                     /xcortree=1034
                     /SigmaFactorBS="tgcctgaatgacatccagaatcgcttgtgtattttctgATTC
                     TCttccgatgccaaaaACATAATATTCAATAGAGCctgctattccttgagagaaaagg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    631631..631632
                     /Source="Nicolas_upshift_promotors"
                     /id="U466"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.508491508491508"
                     /psig="0.237762237762238"
                     /xcortree=1461
                     /SigmaFactorBS="aaaataataaaccaatactgttttctcAAatggtatgtACTC
                     CTTTGTTAAGTgggtttcgttcatctacagctattgtaacataatcggtacgggggtg
                     a"
                     /listShort="S207"
                     /listLong="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /label="promotor_-35"
     promotor_-10    631642..631656
                     /Source="Nicolas_upshift_promotors"
                     /id="U466"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.508491508491508"
                     /psig="0.237762237762238"
                     /xcortree=1461
                     /SigmaFactorBS="aaaataataaaccaatactgttttctcAAatggtatgtACTC
                     CTTTGTTAAGTgggtttcgttcatctacagctattgtaacataatcggtacgggggtg
                     a"
                     /listShort="S207"
                     /listLong="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /label="promotor_-10"
     upshifts        631664
                     /Source="Nicolas_upshifts"
                     /id="U466"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.508491508491508"
                     /psig="0.237762237762238"
                     /xcortree=1461
                     /SigmaFactorBS="aaaataataaaccaatactgttttctcAAatggtatgtACTC
                     CTTTGTTAAGTgggtttcgttcatctacagctattgtaacataatcggtacgggggtg
                     a"
                     /listShort="S207"
                     /listLong="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
     promotor_-10    complement(631669..631688)
                     /Source="Nicolas_upshift_promotors"
                     /id="U467"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=2332
                     /SigmaFactorBS="tcacgcttacatcattcttttccgctcccttttccgttagct
                     TTTTCAcccccgtaccgatTATGTTACAATAGCTGTAGAtgaacgaaacccacttaac
                     a"
                     /listShort="ydiL, ydiK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       631686..631794
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_649718_649826"
                     /HighExp="S4, S5, H2O2, S3, S8, S6, Diami, Oxctl, G180,
                     dia15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.238"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S207"
     upshifts        complement(631689)
                     /Source="Nicolas_upshifts"
                     /id="U467"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=2332
                     /SigmaFactorBS="tcacgcttacatcattcttttccgctcccttttccgttagct
                     TTTTCAcccccgtaccgatTATGTTACAATAGCTGTAGAtgaacgaaacccacttaac
                     a"
                     /listShort="ydiL, ydiK"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(631702..631707)
                     /Source="Nicolas_upshift_promotors"
                     /id="U467"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig=1
                     /xcortree=2332
                     /SigmaFactorBS="tcacgcttacatcattcttttccgctcccttttccgttagct
                     TTTTCAcccccgtaccgatTATGTTACAATAGCTGTAGAtgaacgaaacccacttaac
                     a"
                     /listShort="ydiL, ydiK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    631768..631774
                     /Source="Nicolas_upshift_promotors"
                     /id="U468"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.999000999001"
                     /xcortree=2363
                     /SigmaFactorBS="tgatgtaagcgtgaaaaattttttatcttatcACTTGAAatt
                     ggaagggagaTTCTTTATTATAAGAATTGTgttagcactctttagtgctgagtgctaa
                     a"
                     /listShort="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    631788..631807
                     /Source="Nicolas_upshift_promotors"
                     /id="U468"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.999000999001"
                     /xcortree=2363
                     /SigmaFactorBS="tgatgtaagcgtgaaaaattttttatcttatcACTTGAAatt
                     ggaagggagaTTCTTTATTATAAGAATTGTgttagcactctttagtgctgagtgctaa
                     a"
                     /listShort="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       631796..631870
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_649828_649902"
                     /HighExp="HiTm, Etha, dia15, Heat, C90, dia5, LoTm, Lbexp,
                     H2O2, S1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.238"
                     /label="S208"
     upshifts        631796
                     /Source="Nicolas_upshifts"
                     /id="U468"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.495504495504495"
                     /psig="0.999000999001"
                     /xcortree=2363
                     /SigmaFactorBS="tgatgtaagcgtgaaaaattttttatcttatcACTTGAAatt
                     ggaagggagaTTCTTTATTATAAGAATTGTgttagcactctttagtgctgagtgctaa
                     a"
                     /listShort="S208, groES, groEL, S209, S210, ydiM, S211,
                     ydzU, ydzV, S212, S213, ydiO, ydiP"
                     /GFF_Attribute="listLong"
     CDS             631871..632155
                     /gene="groES"
                     /locus_tag="BSU_06020"
                     /old_locus_tag="BSU06020"
                     /function="16.6: Maintain"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:11407116, 17031040, 9303302"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11407116, 17031040,
                     9303302; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin small subunit"
                     /protein_id="NP_388483.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06020"
                     /db_xref="EnsemblGenomes-Tr:CAB12421"
                     /db_xref="GOA:P28599"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR018369"
                     /db_xref="InterPro:IPR020818"
                     /db_xref="InterPro:IPR037124"
                     /db_xref="SubtiList:BG10422"
                     /db_xref="UniProtKB/Swiss-Prot:P28599"
                     /translation="MLKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGS
                     GRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVIG*"
     gene            631871..632155
                     /gene="groES"
                     /locus_tag="BSU_06020"
                     /old_locus_tag="BSU06020"
     CDS             632202..633836
                     /gene="groEL"
                     /locus_tag="BSU_06030"
                     /old_locus_tag="BSU06030"
                     /function="16.6: Maintain"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:9303302, 11407116, 17031040, 17420574, 22268681"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9303302, 11407116,
                     17031040, 17420574, 22268681; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin large subunit"
                     /protein_id="NP_388484.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06030"
                     /db_xref="EnsemblGenomes-Tr:CAB12422"
                     /db_xref="GOA:P28598"
                     /db_xref="InterPro:IPR001844"
                     /db_xref="InterPro:IPR002423"
                     /db_xref="InterPro:IPR018370"
                     /db_xref="InterPro:IPR027409"
                     /db_xref="InterPro:IPR027410"
                     /db_xref="InterPro:IPR027413"
                     /db_xref="SubtiList:BG10423"
                     /db_xref="UniProtKB/Swiss-Prot:P28598"
                     /translation="MAKEIKFSEEARRAMLRGVDALADAVKVTLGPKGRNVVLEKKFG
                     SPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREG
                     LKNVTAGANPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISAADEEVGSLI
                     AEAMERVGNDGVITIEESKGFTTELEVVEGMQFDRGYASPYMVTDSDKMEAVLDNPYI
                     LITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTFNAVAVKA
                     PGFGDRRKAMLEDIAVLTGGEVITEDLGLDLKSTQIAQLGRASKVVVTKENTTIVEGA
                     GETDKISARVTQIRAQVEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKL
                     RIEDALNSTRAAVEEGIVSGGGTALVNVYNKVAAVEAEGDAQTGINIVLRALEEPIRQ
                     IAHNAGLEGSVIVERLKNEEIGVGFNAATGEWVNMIEKGIVDPTKVTRSALQNAASVA
                     AMFLTTEAVVADKPEENGGGAGMPDMGGMGGMGGMM*"
     gene            632202..633836
                     /gene="groEL"
                     /locus_tag="BSU_06030"
                     /old_locus_tag="BSU06030"
     S_feature       633837..633929
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_651869_651961"
                     /HighExp="HiTm, Etha, dia15, Heat, Diami, dia5, C90, S1,
                     S2, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.238"
                     /label="S209"
     downshifts      633886
                     /Source="Nicolas_upshifts"
                     /id="D292"
                     /incds=0
                     /nref=228
                     /ntot=267
                     /MaxReadThrough="6.24882"
                     /MaxDrop="5.77437"
                     /score="-6.71161833"
                     /energy="-16.3"
                     /TU="U468"
                     /idTUdmin="U466"
                     /TUdmin=2112
                     /isTUend="FALSE"
     CDS             complement(633924..634052)
                     /gene="ydzTc"
                     /locus_tag="BSU_06033"
                     /old_locus_tag="BSU06033"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); C-terminal part of YdzT; defective prophage 3"
                     /translation="EAGVGIKEIQQQFGHSDINTTMDIYAHMTANMEKRSPNSLVN*"
     gene            complement(633924..634052)
                     /gene="ydzTc"
                     /locus_tag="BSU_06033"
                     /old_locus_tag="BSU06033"
                     /pseudo
     S_feature       633931..635399
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_651963_653431"
                     /HighExp="H2O2, Heat, dia15, Diami, S1, G135, G150, S2,
                     G180, dia5"
                     /AntisenseName="ydzT"
                     /AntisenseCor="-2.9485116084752801E-2"
                     /AntisenseRegPval="-0.2"
                     /CDS_PredictionProba="0.23100000000000001"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.238"
                     /label="S210"
     CDS             complement(634055..634213)
                     /gene="ydzT"
                     /locus_tag="BSU_06034"
                     /old_locus_tag="BSU06034"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); internal part of YdzT"
                     /db_xref="PSEUDO:CAX52563.1"
                     /translation="MIYQDSSFIFEREDGHPQLRKVIETRLKRLLKKAGIKRMSPPTL
                     LGIPIPPY*"
     gene            complement(634055..634213)
                     /gene="ydzT"
                     /locus_tag="BSU_06034"
                     /old_locus_tag="BSU06034"
                     /pseudo
     CDS             complement(634258..634386)
                     /gene="ydzT"
                     /locus_tag="BSU_06036"
                     /old_locus_tag="BSU06036"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); internal part of YdzT"
                     /db_xref="PSEUDO:CAX52564.1"
                     /translation="MISQVTKTLYTPNNQIEKYQLLTPKTTGSVDIVRIDETMSIY*"
     gene            complement(634258..634386)
                     /gene="ydzT"
                     /locus_tag="BSU_06036"
                     /old_locus_tag="BSU06036"
                     /pseudo
     CDS             complement(634479..634688)
                     /gene="ydzT"
                     /locus_tag="BSU_06037"
                     /old_locus_tag="BSU06037"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); internal part of YdzT"
                     /db_xref="PSEUDO:CAX52565.1"
                     /translation="MYEDRTLELNEQYSHNCLGGIHACGRMIFRKAKTQGIIKMNPTG
                     DFQLPKKQQSIGKRGADTFSKARSI*"
     gene            complement(634479..634688)
                     /gene="ydzT"
                     /locus_tag="BSU_06037"
                     /old_locus_tag="BSU06037"
                     /pseudo
     CDS             complement(634681..634986)
                     /gene="ydzTn"
                     /locus_tag="BSU_06038"
                     /old_locus_tag="BSU06038"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; putative integrase
                     (fragment); N-terminal part of YdzT; defective prophage 3"
                     /db_xref="PSEUDO:CAX52566.1"
                     /translation="MELSYLLGIDPLTKKRLEISKGRFKTKKEAPVAARHVELQNDNG
                     TFIKESDMPFKTFAKGWLKIYNRSGVKISSVRASEKKMMHFIAVLGQYPISKTQKNV*
                     "
     gene            complement(634681..634986)
                     /gene="ydzTn"
                     /locus_tag="BSU_06038"
                     /old_locus_tag="BSU06038"
                     /pseudo
     CDS             635400..635780
                     /gene="ydiM"
                     /locus_tag="BSU_06040"
                     /old_locus_tag="BSU06040"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; prophage 3 region"
                     /protein_id="NP_388485.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06040"
                     /db_xref="EnsemblGenomes-Tr:CAB12423"
                     /db_xref="SubtiList:BG12785"
                     /db_xref="UniProtKB/Swiss-Prot:O34672"
                     /translation="MLSDNNFVSETLENVQYLLPGAKVIKLRGYSRAHKVYTIAKSPV
                     EKWKVAAGLSGSEIAILIRKGHWIGASIPAGGIVIDIDDSKQGELVKGLLDAQNFHCH
                     CIRTLMGGSLFLRITNMGKRKLNK*"
     gene            635400..635780
                     /gene="ydiM"
                     /locus_tag="BSU_06040"
                     /old_locus_tag="BSU06040"
     S_feature       635781..636038
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_653813_654070"
                     /HighExp="H2O2, dia15, S1, Heat, G150, Diami, G135, G180,
                     S2, Etha"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.1454"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.238"
                     /label="S211"
     CDS             636039..636311
                     /gene="ydzU"
                     /locus_tag="BSU_06048"
                     /old_locus_tag="BSU06048"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; prophage 3 region"
                     /protein_id="YP_003097688.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06048"
                     /db_xref="EnsemblGenomes-Tr:CAX52567"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3W7"
                     /translation="MKAWKVEPYEISKAMELIYKYLLLDKKDFSLEEFYKLTIYAIKW
                     KLEQAQFPLYLESTKKSHQNVIPQPFKIKGNVLYKTVIKNSGDFEE*"
     gene            636039..636311
                     /gene="ydzU"
                     /locus_tag="BSU_06048"
                     /old_locus_tag="BSU06048"
     CDS             636301..636660
                     /gene="ydzV"
                     /locus_tag="BSU_06049"
                     /old_locus_tag="BSU06049"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type h :
                     extrachromosomal origin"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; phage terminase
                     (fragment); defective prophage 3"
                     /db_xref="PSEUDO:CAX52568.1"
                     /translation="MKNSSSWRVGVIHPFKKLSNIERNSVHYELASNDNGREKKDIVP
                     ASVISPSGSCFSLADNGLVEKEGQKMKLTERQRRFCDFFTETRNTTEATRLAGNKGKN
                     LNRVASQNLSKLDIQTI*"
     gene            636301..636660
                     /gene="ydzV"
                     /locus_tag="BSU_06049"
                     /old_locus_tag="BSU06049"
                     /pseudo
     S_feature       636661..637104
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_654693_655136"
                     /HighExp="H2O2, dia15, S1, G180, G135, G150, Heat, Diami,
                     S2, Etha"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.238"
                     /label="S212"
     CDS             636946..637161
                     /gene="ydiN"
                     /locus_tag="BSU_06050"
                     /old_locus_tag="BSU06050"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-terminus of restriction enzyme;
                     defective prophage 3"
                     /db_xref="PSEUDO:SOX90546.1"
                     /translation="MIKFSVILGMIRCSLTHITTKNTVNALKRMIYPKQKPSFFHEFK
                     VLYKLLKKFCIKGIMIKNIRSCMGYFL*"
     gene            636946..637161
                     /gene="ydiN"
                     /locus_tag="BSU_06050"
                     /old_locus_tag="BSU06050"
                     /pseudo
     promotor_-35    637091..637097
                     /Source="Nicolas_upshift_promotors"
                     /id="U469"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.428571428571429"
                     /psig="0.997002997002997"
                     /xcortree=1874
                     /SigmaFactorBS="agcaaaaaccttcattctttcatgaatttaaagtattatata
                     agcTACTGAAaaagttttgtataAAAGGTATAATGATAAAGAAcattcgttcttgtat
                     g"
                     /listShort="S213, ydiO, ydiP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       637106..637190
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_655138_655222"
                     /HighExp="Diami, H2O2, dia5, dia15, Salt, M40t45, G180,
                     G150, G135, M40t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 0.999"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.238"
                     /label="S213"
     upshifts        637106
                     /Source="Nicolas_upshifts"
                     /id="U469"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.428571428571429"
                     /psig="0.997002997002997"
                     /xcortree=1874
                     /SigmaFactorBS="agcaaaaaccttcattctttcatgaatttaaagtattatata
                     agcTACTGAAaaagttttgtataAAAGGTATAATGATAAAGAAcattcgttcttgtat
                     g"
                     /listShort="S213, ydiO, ydiP"
                     /GFF_Attribute="listLong"
     promotor_-10    637111..637130
                     /Source="Nicolas_upshift_promotors"
                     /id="U469"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.428571428571429"
                     /psig="0.997002997002997"
                     /xcortree=1874
                     /SigmaFactorBS="agcaaaaaccttcattctttcatgaatttaaagtattatata
                     agcTACTGAAaaagttttgtataAAAGGTATAATGATAAAGAAcattcgttcttgtat
                     g"
                     /listShort="S213, ydiO, ydiP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             637191..638474
                     /gene="bsuMA"
                     /locus_tag="BSU_06060"
                     /old_locus_tag="BSU06060"
                     /EC_number="2.1.1.37"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11751814, 12682299, 16014871, 16267290"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11751814, 12682299,
                     16014871, 16267290; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-methyltransferase (cytosine-specific);
                     prophage 3 region"
                     /protein_id="NP_388487.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06060"
                     /db_xref="EnsemblGenomes-Tr:CAB12425"
                     /db_xref="GOA:O34939"
                     /db_xref="InterPro:IPR001525"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG12787"
                     /db_xref="UniProtKB/Swiss-Prot:O34939"
                     /translation="MTNFILNENKQLSLAIEDENIENFYIDGTDLVRKIIRRSGSGVT
                     SRVPVLSTQDLENKNLHELYDESWLRMKNRPNTELTTESINIADLFSGCGGLSLGVWE
                     ACRALGINPRFSFACDLNEAALSVYEKNFSPDFSLNESIEKHINGELGAPLTVEEQRI
                     KDKVKKIDFILAGPPCQGHSDLNNHTRRKDPRNALLMRVSRVIELFQPSSVLVENVPG
                     IIHDKSGSFKEFKNHLKTQGYYFDEIVLNAEKLGVSQARRRYFIFASKTPVSSLNQIN
                     EFYSTNSRPISWAISDLVENVGDDIFNTASEHSLENKRRIEYLFENNLFELPNSERPD
                     CHRLKPHSYKSVYGRMYWDRPAPTITRGFGSTGQGRFVHSLLKRTITPHEAARIQFFP
                     DFFNFGDLRRRQYQDVIGNAVPSKLSYLLALHQLR*"
     gene            637191..638474
                     /gene="bsuMA"
                     /locus_tag="BSU_06060"
                     /old_locus_tag="BSU06060"
     CDS             638496..639665
                     /gene="bsuMB"
                     /locus_tag="BSU_06070"
                     /old_locus_tag="BSU06070"
                     /EC_number="2.1.1.37"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11751814, 16267290"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11751814, 16267290;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-methyltransferase (cytosine-specific);
                     defective prophage 3"
                     /protein_id="NP_388488.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06070"
                     /db_xref="EnsemblGenomes-Tr:CAB12426"
                     /db_xref="GOA:O34680"
                     /db_xref="InterPro:IPR001525"
                     /db_xref="InterPro:IPR018117"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="InterPro:IPR031303"
                     /db_xref="SubtiList:BG12788"
                     /db_xref="UniProtKB/Swiss-Prot:O34680"
                     /translation="MKVVSLFSGIGGIELGLHQSGHTTEIFCEVDPLAKAVLSKNFPG
                     VKIEDDINEIRELPSCDLVAAGFPCQDLSQAGGKEGIDGSRSGLVKKLFELIEKKEHA
                     NRPPWILIENVPYMLRLNRGKAMSYLTSVLSELGYTWAYRTVDARCFGLPQRRHRVIL
                     LASLFEDPKDVIFSQDHSEPDLDGKPSVVDHSNYYGFYWTEGLRGVGWAREAVPPIKC
                     GSSVGIASPPAVWSPYEDIVGTINIRDAERLQGFPEDWTNITTETGKDIKEGARWRLV
                     GNAVSVRVSKWIGENLSQPKGSISDFEGELVTKTWPSAAWGYGDKKYKVPVSKWVANT
                     EQIAISEFLNHPLKPLSARALNGFLGRAARCTNVNYSDEFINSLERCKDRQLQKV*"
     gene            638496..639665
                     /gene="bsuMB"
                     /locus_tag="BSU_06070"
                     /old_locus_tag="BSU06070"
     downshifts      639671
                     /Source="Nicolas_upshifts"
                     /id="D293"
                     /incds=0
                     /nref=237
                     /ntot=257
                     /MaxReadThrough="2.10319"
                     /MaxDrop="7.17612"
                     /score="34.7238204"
                     /energy="-15.1"
                     /TU="NA"
                     /idTUdmin="U468"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(639745)
                     /Source="Nicolas_upshifts"
                     /id="D294"
                     /incds=0
                     /nref=26
                     /ntot=183
                     /MaxReadThrough="2.48582"
                     /MaxDrop="4.12737"
                     /score="11.0887998"
                     /energy="-15.6"
                     /TU="NA"
                     /idTUdmin="U471"
                     /TUdmin=2
                     /isTUend="TRUE"
     CDS             complement(639761..640030)
                     /gene="ydzWc"
                     /locus_tag="BSU_06073"
                     /old_locus_tag="BSU06073"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphoglucomutase; C-terminal part of
                     YdzW; defective prophage 3"
                     /db_xref="PSEUDO:CAX52569.1"
                     /translation="MNLASFGSVKVTTVEDYLTGIERLWKALRNSWAFHSQMFLNVFL
                     KSDPWMCLRLSGTEPKIKFYFRVDESLAETRNPQRIEKEFMELVE*"
     gene            complement(639761..640030)
                     /gene="ydzWc"
                     /locus_tag="BSU_06073"
                     /old_locus_tag="BSU06073"
                     /pseudo
     CDS             complement(639987..640157)
                     /gene="ydzWmc"
                     /locus_tag="BSU_06074"
                     /old_locus_tag="BSU06074"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphoglucomutase; internal part of
                     YdzW"
                     /translation="MSLYEALLSIEEYGYFQEGLRSLTLKGKEGAELIQQTLAAFRSE
                     FGQLWFRQGYHC*"
     gene            complement(639987..640157)
                     /gene="ydzWmc"
                     /locus_tag="BSU_06074"
                     /old_locus_tag="BSU06074"
                     /pseudo
     CDS             complement(640088..640573)
                     /gene="ydzWmb"
                     /locus_tag="BSU_06076"
                     /old_locus_tag="BSU06076"
                     /EC_number="5.4.2.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphoglucomutase; internal part of
                     YdzW"
                     /translation="LIATDPDADRLGIAVKNENGEYTVLTGNQTEPLLLHYILTQIKK
                     KGTLPSNGIVLKTIVTSELGREVATSFRVETIGVLTGFKFIARKINGYYKTGEHNFLF
                     GYEESYGYLIGDFVRDKDAVQTDVLAVEVCAYYKKKGFHYTKLSLVLKNMATFRKACA
                     H*"
     gene            complement(640088..640573)
                     /gene="ydzWmb"
                     /locus_tag="BSU_06076"
                     /old_locus_tag="BSU06076"
                     /pseudo
     promotor_-35    640438..640441
                     /Source="Nicolas_upshift_promotors"
                     /id="U470"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.563436563436563"
                     /psig="0.997002997002997"
                     /xcortree=3091
                     /SigmaFactorBS="aatcgttttaagaacgatcccattagatggaagtgttcCTTT
                     cttttttatttgggTTAAGATATAGTGGAGCAGAagtggctcggtttgatttccggtt
                     a"
                     /listShort="S214"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    640456..640475
                     /Source="Nicolas_upshift_promotors"
                     /id="U470"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.563436563436563"
                     /psig="0.997002997002997"
                     /xcortree=3091
                     /SigmaFactorBS="aatcgttttaagaacgatcccattagatggaagtgttcCTTT
                     cttttttatttgggTTAAGATATAGTGGAGCAGAagtggctcggtttgatttccggtt
                     a"
                     /listShort="S214"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        640460
                     /Source="Nicolas_upshifts"
                     /id="U470"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.563436563436563"
                     /psig="0.997002997002997"
                     /xcortree=3091
                     /SigmaFactorBS="aatcgttttaagaacgatcccattagatggaagtgttcCTTT
                     cttttttatttgggTTAAGATATAGTGGAGCAGAagtggctcggtttgatttccggtt
                     a"
                     /listShort="S214"
                     /GFF_Attribute="listLong"
     S_feature       640463..640867
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_658495_658899"
                     /HighExp="Cold, LoTm, C30, T0.30H, HPh, Gly, S0, LPh,
                     UNK1, T1.0H"
                     /AntisenseName="ydzW"
                     /AntisenseCor="0.298083403528066"
                     /AntisenseRegPval="-6.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S214"
     CDS             complement(640583..640726)
                     /gene="ydzW"
                     /locus_tag="BSU_06077"
                     /old_locus_tag="BSU06077"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphomannomutase; internal part of
                     YdzW"
                     /db_xref="PSEUDO:CAX52572.1"
                     /translation="MALAAMNYKHVAVGKEQEQPALCFPLSPVQMLKNMPRLSWPSGK
                     AAN*"
     gene            complement(640583..640726)
                     /gene="ydzW"
                     /locus_tag="BSU_06077"
                     /old_locus_tag="BSU06077"
                     /pseudo
     CDS             complement(640781..640978)
                     /gene="ydzW"
                     /locus_tag="BSU_06078"
                     /old_locus_tag="BSU06078"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphoglucomutase; internal part of
                     YdzW"
                     /translation="FAVRHLHGFAGIVVTASHNPPEYNGYKVYGPDGGQLPPSKGPDQ
                     NIAQRWTRHTLNYFRKLKYLR*"
     gene            complement(640781..640978)
                     /gene="ydzW"
                     /locus_tag="BSU_06078"
                     /old_locus_tag="BSU06078"
                     /pseudo
     CDS             complement(640936..641097)
                     /gene="ydzWma"
                     /locus_tag="BSU_06079"
                     /old_locus_tag="BSU06079"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphomannomutase; internal part of
                     YdzW"
                     /translation="DIYTLRKVSAGLAAFIMEAARTLASSAYVFESLRPTTVLSLQYV
                     TFMVLPVLL*"
     gene            complement(640936..641097)
                     /gene="ydzWma"
                     /locus_tag="BSU_06079"
                     /old_locus_tag="BSU06079"
                     /pseudo
     CDS             complement(641082..641189)
                     /gene="ydzWn"
                     /locus_tag="BSU_06083"
                     /old_locus_tag="BSU06083"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; Product type e :
                     enzyme"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative phosphomannomutase; N-terminal part of
                     YdzW; defective prophage 3"
                     /translation="MRKTWKMLFIRNLGYGTGGMRGEIGAGTNRMTSIR*"
     gene            complement(641082..641189)
                     /gene="ydzWn"
                     /locus_tag="BSU_06083"
                     /old_locus_tag="BSU06083"
                     /pseudo
     S_feature       complement(641190..641309)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_659222_659341_c"
                     /HighExp="LoTm, T4.0H, BC, T5.0H, M9-stat, T3.30H, S2,
                     T3.0H, Sw, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.993, 0.977"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S215"
     promotor_-10    complement(641300..641319)
                     /Source="Nicolas_upshift_promotors"
                     /id="U471"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.321678321678322"
                     /psig="0.993006993006993"
                     /xcortree=2932
                     /SigmaFactorBS="caagagcactcgatttatgtcagaaagtcgtCGTTcgaaaac
                     ctctagacTATATTATAATGAACAATAAtgttattttattgtaggtcaatcataggct
                     g"
                     /listShort="S215, ydzW, ydzW, ydzW, ydzW, ydzW, ydzW,
                     ydzW"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(641309)
                     /Source="Nicolas_upshifts"
                     /id="U471"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.321678321678322"
                     /psig="0.993006993006993"
                     /xcortree=2932
                     /SigmaFactorBS="caagagcactcgatttatgtcagaaagtcgtCGTTcgaaaac
                     ctctagacTATATTATAATGAACAATAAtgttattttattgtaggtcaatcataggct
                     g"
                     /listShort="S215, ydzW, ydzW, ydzW, ydzW, ydzW, ydzW,
                     ydzW"
                     /GFF_Attribute="listLong"
     S_feature       complement(641311..641526)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_659343_659558_c"
                     /HighExp="LBGstat, T0.30H, M9-stat, T1.0H, T1.30H, Lbtran,
                     T2.0H, LBGtran, T2.30H, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.11296"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.977"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S216"
     promotor_-35    complement(641335..641338)
                     /Source="Nicolas_upshift_promotors"
                     /id="U471"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.321678321678322"
                     /psig="0.993006993006993"
                     /xcortree=2932
                     /SigmaFactorBS="caagagcactcgatttatgtcagaaagtcgtCGTTcgaaaac
                     ctctagacTATATTATAATGAACAATAAtgttattttattgtaggtcaatcataggct
                     g"
                     /listShort="S215, ydzW, ydzW, ydzW, ydzW, ydzW, ydzW,
                     ydzW"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    641503..641509
                     /Source="Nicolas_upshift_promotors"
                     /id="U473"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.857142857142857"
                     /psig=1
                     /xcortree=2344
                     /SigmaFactorBS="taccaattcgatatttgaattggtctctcaaacaaTTCCATC
                     ctctttatttatTATGATACAATTATATTAATtagaaaatacatacatattagcttgt
                     g"
                     /listShort="ydiR, ydiS, ydjA, S217, S218, ydjB, S219,
                     ydjC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(641512..641531)
                     /Source="Nicolas_upshift_promotors"
                     /id="U472"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.458541458541459"
                     /psig="0.977022977022977"
                     /xcortree=3186
                     /SigmaFactorBS="tttacccccataaaatcacacaagctaatatgtatgtATTTt
                     ctaattaatataaTTGTATCATAATAAATAAAGaggatggaattgtttgagagaccaa
                     t"
                     /listShort="S216, S215, ydzW, ydzW, ydzW, ydzW, ydzW,
                     ydzW"
                     /listLong="ydzW"
                     /label="promotor_-10"
     promotor_-10    641522..641541
                     /Source="Nicolas_upshift_promotors"
                     /id="U473"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.857142857142857"
                     /psig=1
                     /xcortree=2344
                     /SigmaFactorBS="taccaattcgatatttgaattggtctctcaaacaaTTCCATC
                     ctctttatttatTATGATACAATTATATTAATtagaaaatacatacatattagcttgt
                     g"
                     /listShort="ydiR, ydiS, ydjA, S217, S218, ydjB, S219,
                     ydjC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(641526)
                     /Source="Nicolas_upshifts"
                     /id="U472"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.458541458541459"
                     /psig="0.977022977022977"
                     /xcortree=3186
                     /SigmaFactorBS="tttacccccataaaatcacacaagctaatatgtatgtATTTt
                     ctaattaatataaTTGTATCATAATAAATAAAGaggatggaattgtttgagagaccaa
                     t"
                     /listShort="S216, S215, ydzW, ydzW, ydzW, ydzW, ydzW,
                     ydzW"
                     /listLong="ydzW"
     upshifts        641528
                     /Source="Nicolas_upshifts"
                     /id="U473"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.857142857142857"
                     /psig=1
                     /xcortree=2344
                     /SigmaFactorBS="taccaattcgatatttgaattggtctctcaaacaaTTCCATC
                     ctctttatttatTATGATACAATTATATTAATtagaaaatacatacatattagcttgt
                     g"
                     /listShort="ydiR, ydiS, ydjA, S217, S218, ydjB, S219,
                     ydjC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(641546..641549)
                     /Source="Nicolas_upshift_promotors"
                     /id="U472"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.458541458541459"
                     /psig="0.977022977022977"
                     /xcortree=3186
                     /SigmaFactorBS="tttacccccataaaatcacacaagctaatatgtatgtATTTt
                     ctaattaatataaTTGTATCATAATAAATAAAGaggatggaattgtttgagagaccaa
                     t"
                     /listShort="S216, S215, ydzW, ydzW, ydzW, ydzW, ydzW,
                     ydzW"
                     /listLong="ydzW"
                     /label="promotor_-35"
     CDS             641591..642532
                     /gene="bsuRA"
                     /locus_tag="BSU_06090"
                     /old_locus_tag="BSU06090"
                     /EC_number="3.1.21.4"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:11751814, 15728999"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11751814, 15728999;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="type-2 restriction enzyme BsuMI component BsuRA
                     (YdiR); prophage region 3"
                     /protein_id="NP_388490.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06090"
                     /db_xref="EnsemblGenomes-Tr:CAB12428"
                     /db_xref="GOA:O35025"
                     /db_xref="SubtiList:BG12790"
                     /db_xref="UniProtKB/Swiss-Prot:O35025"
                     /translation="MTFIKRLEDAYETLLGNYPAGVSSTSTSKYNEIRKIVSEAFLIG
                     ENEVYVTGTSRRISNLDTRFAQGNQRNKHTRMAVAFISIPSVDDSELDELIIRTRNSA
                     ITTSSKFCNGEERGTIFDGILLFLVFEGETKVYPLAFLVFENDFELKEKAEELIPGIE
                     LKEYPRANQSPAQENNKSAKNEDEESAKSYVVFLDIEEDGSIVEFVEDKDKTYRIGDM
                     IWTASHTNGSSAITRRLEVIEVVENLVVCKIKHKYNEPVDKNSLLKFVNIEQDLISFL
                     DLHPNVQNGSEGFVSGDIVDENATTSSDDLPEDFENN*"
     gene            641591..642532
                     /gene="bsuRA"
                     /locus_tag="BSU_06090"
                     /old_locus_tag="BSU06090"
     CDS             642564..643595
                     /gene="bsuRB"
                     /locus_tag="BSU_06100"
                     /old_locus_tag="BSU06100"
                     /EC_number="3.1.21.4"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:11751814"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11751814; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="type-2 restriction enzyme BsuMI component BsuRB
                     (YdiS); prophage region 3"
                     /protein_id="NP_388491.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06100"
                     /db_xref="EnsemblGenomes-Tr:CAB12429"
                     /db_xref="GOA:O34885"
                     /db_xref="InterPro:IPR011704"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12791"
                     /db_xref="UniProtKB/Swiss-Prot:O34885"
                     /translation="MEISKQTSDLLLSLEKKKGTLPKFSVLRSIPRNRIIYGAPGTGK
                     SNYLEREVGKIFGDNPYVFTRVTFFPGYTYGQFIGAYKPVPIYKKLSGEEEIFSSNFR
                     DKMENFEPMIDYQFVPGPFIDVLIKALKNRYTNFILIIEEINRANAASVFGDIFQLLD
                     RNKNGESDYPVTFGPDIMNYLARNGIKDEMIKLPSNFFIWATMNNADQGVLPLDTAFK
                     RRWSFEYLELEKYRKAVDSWKLSLRYKGHNKVIMWNDFRDIINKRLKGKVPEDKLLGP
                     FFLKESELWNQNVFKNKLLYYLKEDVFKHNPTIDFLNASTFSELIEKYDGSDNIFTFD
                     IDDSSFVSD*"
     gene            642564..643595
                     /gene="bsuRB"
                     /locus_tag="BSU_06100"
                     /old_locus_tag="BSU06100"
     CDS             643598..644995
                     /gene="bsuRC"
                     /locus_tag="BSU_06110"
                     /old_locus_tag="BSU06110"
                     /EC_number="3.1.21.4"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11751814"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11751814; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="type-2 restriction enzyme BsuMI component BsuRC
                     (YdjA); prophage region 3"
                     /protein_id="NP_388492.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06110"
                     /db_xref="EnsemblGenomes-Tr:CAB12430"
                     /db_xref="GOA:O34303"
                     /db_xref="InterPro:IPR018579"
                     /db_xref="SubtiList:BG12792"
                     /db_xref="UniProtKB/Swiss-Prot:O34303"
                     /translation="MDKSSKFFFEDQKYNKERIVRVLGGNLALLKSKGILYEDSSGDL
                     IFNYVGVISNGRNVIFILPKYCNRHLDEHSKRTLFNKLLKIFKKYSGLNKSRESDYFV
                     SELDSDEVSDFMIADYLLNDFSLNGYYQKKFTEYEIDGEGIIDWSKTVNEITPVFSKG
                     VPYYFSTYNEVVQKDEYHLIVKIHKWALSKYFNDFGVILGFTGLEFDKSCDGMKILDY
                     ADFFGSVINKEIVNTYVDRDVKLLKALKTAIDREENQFSKRPTLSLYGTKYFHRVWEE
                     VCKTVFSHVNEYVKKISRPNWINFTDIEVNKEKKTLEPDIIKAFEYRSKEYFLILDAK
                     YYNINFDGKKLEGNPGVEDITKQLLYDKALEKLSRGKTKHNAFLFPSSNSTNTFKVFG
                     SVDFDFLDIAAVTLVYISAEQVYNLYLENKTFSTDDLFKFVSEINKSKKRHSVITSTL
                     YGNMFLFTKRLSDKN*"
     gene            643598..644995
                     /gene="bsuRC"
                     /locus_tag="BSU_06110"
                     /old_locus_tag="BSU06110"
     S_feature       644996..645192
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_663028_663224"
                     /HighExp="Lbtran, C90, M40t45, HPh, M0t45, LBGtran, aero,
                     Lbstat, BI, Mt0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S217"
     downshifts      645149
                     /Source="Nicolas_upshifts"
                     /id="D295"
                     /incds=0
                     /nref=3
                     /ntot=131
                     /MaxReadThrough="5.36465"
                     /MaxDrop="3.0162"
                     /score="7.16368756"
                     /energy="-18.1"
                     /TU="U473"
                     /idTUdmin="U473"
                     /TUdmin="-1364"
                     /isTUend="FALSE"
     downshifts      645211
                     /Source="Nicolas_upshifts"
                     /id="D296"
                     /incds=0
                     /nref=5
                     /ntot=69
                     /MaxReadThrough="4.58628"
                     /MaxDrop="3.49698"
                     /score="7.16368756"
                     /energy="-18.1"
                     /TU="U473"
                     /idTUdmin="U473"
                     /TUdmin="-1302"
                     /isTUend="FALSE"
     S_feature       645256..645568
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_663288_663600"
                     /HighExp="dia15, Diami, H2O2, Paraq, dia5, LBGstat, G180,
                     Oxctl, LBGexp, HPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S218"
     CDS             645569..645904
                     /gene="ydjB"
                     /locus_tag="BSU_06120"
                     /old_locus_tag="BSU06120"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; prophage region 3"
                     /protein_id="NP_388493.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06120"
                     /db_xref="EnsemblGenomes-Tr:CAB12431"
                     /db_xref="SubtiList:BG12793"
                     /db_xref="UniProtKB/Swiss-Prot:O34778"
                     /translation="MLNIKSDRIMTSDPQKFTVDGVRFFQQYLNKIRPDAMEIDNLII
                     NSDIIKEDLIVHVSKMIDRLALYDLHRKRSIDKHFSAAFTVDINDREEFYSANIADVS
                     IDLNESSGV*"
     gene            645569..645904
                     /gene="ydjB"
                     /locus_tag="BSU_06120"
                     /old_locus_tag="BSU06120"
     S_feature       645905..646286
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_663937_664318"
                     /HighExp="H2O2, dia15, G135, Paraq, G180, G150, Diami,
                     Oxctl, LBGexp, HPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S219"
     CDS             646287..646637
                     /gene="ydjC"
                     /locus_tag="BSU_06130"
                     /old_locus_tag="BSU06130"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; prophage region
                     3"
                     /protein_id="NP_388494.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06130"
                     /db_xref="EnsemblGenomes-Tr:CAB12432"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12794"
                     /db_xref="UniProtKB/Swiss-Prot:O34715"
                     /translation="MVSIFYANRLSYSIWNTIPGKYIREELEQNGVTYNELIKYWDIT
                     DPSQALPKVNKDNVLLISAKHDQYIDLKDADYLWESWGRPTRYVYNCGHSGIVLCRKK
                     LANDTLSFIREKLV*"
     gene            646287..646637
                     /gene="ydjC"
                     /locus_tag="BSU_06130"
                     /old_locus_tag="BSU06130"
     downshifts      646513
                     /Source="Nicolas_upshifts"
                     /id="D297"
                     /incds=1
                     /nref=1
                     /ntot=71
                     /MaxReadThrough="1.89703"
                     /MaxDrop="2.58458"
                     /score="-4.72838456"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U473"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(646743..649232)
                     /gene="gutR"
                     /locus_tag="BSU_06140"
                     /old_locus_tag="BSU06140"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11118449, 11390381, 12897001"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11118449, 11390381,
                     12897001; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of the glucitol
                     operon"
                     /protein_id="NP_388495.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06140"
                     /db_xref="EnsemblGenomes-Tr:CAB12433"
                     /db_xref="GOA:P39143"
                     /db_xref="InterPro:IPR002182"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011990"
                     /db_xref="InterPro:IPR013026"
                     /db_xref="InterPro:IPR019734"
                     /db_xref="InterPro:IPR024123"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10178"
                     /db_xref="UniProtKB/Swiss-Prot:P39143"
                     /translation="MAELENRKQFAQMLAPGVKTLKLHPDYKVRRKKNEKTGQSYIDK
                     IALQLGVSPNTIKSWIGQMGANYIPGRIDDGKLFGMIWIILEKTDLDIEWLTDLLEAT
                     TIPVIKPALPVWAASCLKKAKILRKDGLFGAPSEGEIENVVKRLFHDRPGQETNALTE
                     QPITHNLPSRWSGRFIGRSFDMEAIRQWMLSPSPVCLITGWAGMGKTTIALEAAYSCV
                     DDTSVWPAFNSIIWVSADWKGLSFSDFLNTIAYQLGRKEQIDKSINVKRFVVRNALAN
                     YTREKPILLIVDSIDTAERDIHEFITSLPQGVKVLLTARENVKQTYRESFGEMTAIQL
                     SGLDQTDAHEFFQQEVHHCLQTCNLPRKREKLEQLLHLSSDLKNEFISATAGNPKAMA
                     LSIAYMSDDDIPAQQLIHELGKAGYSLLELFEFLFGRTWDRCNEDTRKLWQTLCFFSK
                     PPDEKSLAAAAGLDARRFHYAMEQMRSYALIQPERSQGRTQYLAHQTVVAYGEQHLSE
                     QHEYEKEARNRWAHYYIDYAETHLKREQPNSIYWSYLLGRNLDQMKQEWPNILKVIQW
                     ASETEQKEILIELITRISHFLSRINLPLRIEYGRKAADAAHHLGQHTREAYFRIDTSG
                     WALMEVNDLDGALQQIEAGLKILEQSDAHDAYDLKVWGHALKARLFLKDGQQEKAETI
                     LNEIENQPISPTIQHRVLLVRGDLSFARGYHVEAIQLYEAANEISSTYGGEKTIEAYF
                     NLGVAYVKCDQFEKAEEAFEQMLYDKHNANQVELIYYHYGMAQLLYRKGEKTKAVESN
                     QKAIRLIDSWEPAIGIRGEVERLARATKENE*"
     gene            complement(646743..649232)
                     /gene="gutR"
                     /locus_tag="BSU_06140"
                     /old_locus_tag="BSU06140"
     downshifts      complement(646765)
                     /Source="Nicolas_upshifts"
                     /id="D298"
                     /incds=0
                     /nref=56
                     /ntot=209
                     /MaxReadThrough="0.69715"
                     /MaxDrop="4.256"
                     /score="0.285109352"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U474"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(649246..649265)
                     /Source="Nicolas_upshift_promotors"
                     /id="U474"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig="0.995004995004995"
                     /xcortree=2305
                     /SigmaFactorBS="ctttcctgctgtataaaaggacagcggcactgtacttttatt
                     ttttCATATACAaaaaacgctggatTGATAAAATAGTACTAATAGgaggtgcaggctt
                     a"
                     /listShort="gutR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(649272)
                     /Source="Nicolas_upshifts"
                     /id="U474"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig="0.995004995004995"
                     /xcortree=2305
                     /SigmaFactorBS="ctttcctgctgtataaaaggacagcggcactgtacttttatt
                     ttttCATATACAaaaaacgctggatTGATAAAATAGTACTAATAGgaggtgcaggctt
                     a"
                     /listShort="gutR"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(649279..649286)
                     /Source="Nicolas_upshift_promotors"
                     /id="U474"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.573426573426573"
                     /psig="0.995004995004995"
                     /xcortree=2305
                     /SigmaFactorBS="ctttcctgctgtataaaaggacagcggcactgtacttttatt
                     ttttCATATACAaaaaacgctggatTGATAAAATAGTACTAATAGgaggtgcaggctt
                     a"
                     /listShort="gutR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    649335..649336
                     /Source="Nicolas_upshift_promotors"
                     /id="U475"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.481518481518482"
                     /psig="0.848151848151848"
                     /xcortree=335
                     /SigmaFactorBS="aataaaagtacagtgccgctgtccttttatacagcaggaaag
                     gcTGttgaacgtgttaaaaAGCAGATAAAATGGGGGCAGtaacagagaaaacaaaaat
                     g"
                     /listShort="S220, gutB, gutP, ydjE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       649351..649433
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_667383_667465"
                     /HighExp="Lbstat, BI, M40t90, Mt0, M0t90, dia5, dia0,
                     Lbexp, Lbtran, LBGtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.848"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S220"
     upshifts        649351
                     /Source="Nicolas_upshifts"
                     /id="U475"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.481518481518482"
                     /psig="0.848151848151848"
                     /xcortree=335
                     /SigmaFactorBS="aataaaagtacagtgccgctgtccttttatacagcaggaaag
                     gcTGttgaacgtgttaaaaAGCAGATAAAATGGGGGCAGtaacagagaaaacaaaaat
                     g"
                     /listShort="S220, gutB, gutP, ydjE"
                     /GFF_Attribute="listLong"
     promotor_-10    649352..649371
                     /Source="Nicolas_upshift_promotors"
                     /id="U475"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.481518481518482"
                     /psig="0.848151848151848"
                     /xcortree=335
                     /SigmaFactorBS="aataaaagtacagtgccgctgtccttttatacagcaggaaag
                     gcTGttgaacgtgttaaaaAGCAGATAAAATGGGGGCAGtaacagagaaaacaaaaat
                     g"
                     /listShort="S220, gutB, gutP, ydjE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             649434..650495
                     /gene="gutB"
                     /locus_tag="BSU_06150"
                     /old_locus_tag="BSU06150"
                     /EC_number="1.1.1.14"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:1460002, 8195086, 8195087, 12897001, 19784641"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1460002, 8195086,
                     8195087, 12897001, 19784641; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glucitol (sorbitol) dehydrogenase"
                     /protein_id="NP_388496.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06150"
                     /db_xref="EnsemblGenomes-Tr:CAB12434"
                     /db_xref="GOA:Q06004"
                     /db_xref="InterPro:IPR002328"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR013154"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG10177"
                     /db_xref="UniProtKB/Swiss-Prot:Q06004"
                     /translation="MTHTVPQNMKAAVMHNTREIKIETLPVPDINHDEVLIKVMAVGI
                     CGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGR
                     CEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSV
                     GIHAAARTKLQPGSTIAIMGMGPVGLMAVAAAKAFGAGTIIVTDLEPLRLEAAKKMGA
                     THIINIREQDALEEIKTITNDRGVDVAWETAGNPAALQSALASVRRGGKLAIVGLPSQ
                     NEIPLNVPFIADNEIDIYGIFRYANTYPKGIEFLASGIVDTKHLVTDQYSLEQTQDAM
                     ERALQFKNECLKVMVYPNR*"
     gene            649434..650495
                     /gene="gutB"
                     /locus_tag="BSU_06150"
                     /old_locus_tag="BSU06150"
     CDS             650569..651960
                     /gene="gutP"
                     /locus_tag="BSU_06160"
                     /old_locus_tag="BSU06160"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 12897001, 22720735;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="H+-glucitol symporter; prophage region 3"
                     /protein_id="NP_388497.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06160"
                     /db_xref="EnsemblGenomes-Tr:CAB12435"
                     /db_xref="GOA:O34368"
                     /db_xref="InterPro:IPR001927"
                     /db_xref="InterPro:IPR018043"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12795"
                     /db_xref="UniProtKB/Swiss-Prot:O34368"
                     /translation="MIGTEKVTALKAKHQSKSSTGLSWFERIGYGFGDMSYNIIFQFV
                     NAYLLFYYTDVGGIQPAVIATLFLVVRVLDAIFDPIMGLILDKTNTRWGKARPYLLWV
                     AFPFALFTFLCFTTPHFGETGNMVYAYVTYILLGMSFSMQTIPVNSLTGRMTNSVEER
                     TVLTTTRMILVYIGILLSISCATPLATAIGGEDQAFGFQMTALIYAAVSIVLNLFSFF
                     TVRERIQPKKRKKQGIKKTLSVLFKNKPLLMLISSFLAFAIGFNIKLSTMVYYFTYNV
                     NHKEFVFMGTVLFFGAALISNLFIPFFSEKWGRKQVMIITAALSLISYAGLHFTPYSS
                     IPLIFIWLFASGFFTTPLNTLAWGMVADCVDYAEWKTGIRADGVVISSMSFINKLGVA
                     LAGSFSAIYLGIAGYVANTDQTVASLNAIKNMNALIPGFFILLSIILIAFYPLTEKRY
                     KHIISELEQRSAR*"
     gene            650569..651960
                     /gene="gutP"
                     /locus_tag="BSU_06160"
                     /old_locus_tag="BSU06160"
     promotor_-35    651987..651994
                     /Source="Nicolas_upshift_promotors"
                     /id="U476"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.871128871128871"
                     /psig="0.997002997002997"
                     /xcortree=489
                     /SigmaFactorBS="cgagataaatagatgtaaaatttttaatattcaaTGTTGTAT
                     ttatggcaaaaagTAATATACTGAGACTGTAATctagactttataaatgagtgtgata
                     a"
                     /listShort="ydjE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    652008..652027
                     /Source="Nicolas_upshift_promotors"
                     /id="U476"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.871128871128871"
                     /psig="0.997002997002997"
                     /xcortree=489
                     /SigmaFactorBS="cgagataaatagatgtaaaatttttaatattcaaTGTTGTAT
                     ttatggcaaaaagTAATATACTGAGACTGTAATctagactttataaatgagtgtgata
                     a"
                     /listShort="ydjE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        652013
                     /Source="Nicolas_upshifts"
                     /id="U476"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.871128871128871"
                     /psig="0.997002997002997"
                     /xcortree=489
                     /SigmaFactorBS="cgagataaatagatgtaaaatttttaatattcaaTGTTGTAT
                     ttatggcaaaaagTAATATACTGAGACTGTAATctagactttataaatgagtgtgata
                     a"
                     /listShort="ydjE"
                     /GFF_Attribute="listLong"
     CDS             652055..653017
                     /gene="ydjE"
                     /locus_tag="BSU_06170"
                     /old_locus_tag="BSU06170"
                     /EC_number="2.7.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26483775, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sugar kinase (ribokinase family);
                     prophage region 3"
                     /protein_id="NP_388498.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06170"
                     /db_xref="EnsemblGenomes-Tr:CAB12436"
                     /db_xref="GOA:O34768"
                     /db_xref="InterPro:IPR002173"
                     /db_xref="InterPro:IPR011611"
                     /db_xref="InterPro:IPR029056"
                     /db_xref="SubtiList:BG12796"
                     /db_xref="UniProtKB/Swiss-Prot:O34768"
                     /translation="MRSHSVVCIGELLIDFFCTDVDVDLMEGRQFLKSAGGAPANVSA
                     AIAKLGGDAAFSGKVGKDPFGYFLKRTLDAVHVDTSMLVMDEKAPTTLAFVSLKQNGE
                     RDFVFNRGADALFTLEDIDQEKLNEAKILHFGSATALLSDPFCSAYLRLMSIAKDNGQ
                     FISFDPNYREDLWRGRVSEFVSVAKKAIAVSDFVKVSDEELEIISGVKDHEKGVAILH
                     EIGANIVAVTLGKSGTLLSNGKDREIIPSIPVTSIDSTGAGDAFVGAALYQLANTDQI
                     QSVDADFVKLREIVAFANKVGALVCTKIGAIDALPSLDEIGVSL*"
     gene            652055..653017
                     /gene="ydjE"
                     /locus_tag="BSU_06170"
                     /old_locus_tag="BSU06170"
     downshifts      653002
                     /Source="Nicolas_upshifts"
                     /id="D299"
                     /incds=0
                     /nref=86
                     /ntot=213
                     /MaxReadThrough="2.99546"
                     /MaxDrop="4.52045"
                     /score="16.4550614"
                     /energy="-14"
                     /TU="NA"
                     /idTUdmin="U475"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     promotor_-35    653142..653151
                     /Source="Nicolas_upshift_promotors"
                     /id="U477"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1663
                     /SigmaFactorBS="agttgtatattttttgtttgaaatgtcattttttattaaaaa
                     agTGAAACTTTTaacgataataaaTAGTATATGTAACAAGggttaccgaattagcttt
                     a"
                     /listShort="pspA, S221, ydjG, ydjH, ydjI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        653158
                     /Source="Nicolas_upshifts"
                     /id="U477"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1663
                     /SigmaFactorBS="agttgtatattttttgtttgaaatgtcattttttattaaaaa
                     agTGAAACTTTTaacgataataaaTAGTATATGTAACAAGggttaccgaattagcttt
                     a"
                     /listShort="pspA, S221, ydjG, ydjH, ydjI"
                     /GFF_Attribute="listLong"
     promotor_-10    653164..653179
                     /Source="Nicolas_upshift_promotors"
                     /id="U477"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=1663
                     /SigmaFactorBS="agttgtatattttttgtttgaaatgtcattttttattaaaaa
                     agTGAAACTTTTaacgataataaaTAGTATATGTAACAAGggttaccgaattagcttt
                     a"
                     /listShort="pspA, S221, ydjG, ydjH, ydjI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             653213..653896
                     /gene="pspA"
                     /locus_tag="BSU_06180"
                     /old_locus_tag="BSU06180"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:11454200"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11454200; Product type h:
                     extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein A homolog regulator;
                     prophage region 3"
                     /protein_id="NP_388499.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06180"
                     /db_xref="EnsemblGenomes-Tr:CAB12437"
                     /db_xref="GOA:P54617"
                     /db_xref="InterPro:IPR007157"
                     /db_xref="SubtiList:BG12797"
                     /db_xref="UniProtKB/Swiss-Prot:P54617"
                     /translation="MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVK
                     AETAAVMAEEQRAKREYHECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLS
                     ELQAANQIAATNAAQMRKMHDKLVSDIGELEARKNMIKAKWAVAKTQERMNKLGASVS
                     STSQSMSAFGRMEDKVNKALDQANAMAELNSAPQDDMADLSAKYDTGGSSQVDDELAA
                     LKAKMMLDK*"
     gene            653213..653896
                     /gene="pspA"
                     /locus_tag="BSU_06180"
                     /old_locus_tag="BSU06180"
     S_feature       653897..653961
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_671929_671993"
                     /HighExp="Salt, S0, aero, T-0.40H, T-1.40H, SMMPr,
                     T-1.10H, T0.0H, Cold, GM 120"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S221"
     CDS             653962..654987
                     /gene="ydjG"
                     /locus_tag="BSU_06190"
                     /old_locus_tag="BSU06190"
                     /function="16.5: Explore"
                     /function="16.9: Replicate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type h : extrachromosomal
                     origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage replication protein; prophage
                     region 3"
                     /protein_id="NP_388500.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06190"
                     /db_xref="EnsemblGenomes-Tr:CAB12438"
                     /db_xref="GOA:O34434"
                     /db_xref="InterPro:IPR013137"
                     /db_xref="SubtiList:BG12798"
                     /db_xref="UniProtKB/Swiss-Prot:O34434"
                     /translation="MIISYKCPNCGSDMAFDSETGSLSCSSCGRQDNIESLPKENIAA
                     RFSDDEAKEYQCKNCGAVLITEAETTATTCSFCGGAAILADRLSGHLAPAKVIPFTIS
                     KQEAEQAFRKWCKKGLLTPRGFMSADRIKSITGMYIPFWMFDLNSEVQVRANCTRVHQ
                     YEEGDYICTETEHFEAFRDINLDYLKIPVDASEKMKDELMDKLEPYSYEELKDFQTAY
                     LAGYIAEKYNYTDEELFPRAKEKISSYIDSYIHSTFSGYTSVNVRDKHIHTKNVNSFY
                     VLLPVWMVSYDYERAEHIFAMNGQTGKVVGKPPISRGKVAAWFSGIAGGTFLALKLVS
                     LMMGGGF*"
     gene            653962..654987
                     /gene="ydjG"
                     /locus_tag="BSU_06190"
                     /old_locus_tag="BSU06190"
     CDS             654987..655751
                     /gene="ydjH"
                     /locus_tag="BSU_06200"
                     /old_locus_tag="BSU06200"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; prophage region
                     3"
                     /protein_id="NP_388501.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06200"
                     /db_xref="EnsemblGenomes-Tr:CAB12439"
                     /db_xref="GOA:O35004"
                     /db_xref="InterPro:IPR007621"
                     /db_xref="SubtiList:BG12799"
                     /db_xref="UniProtKB/Swiss-Prot:O35004"
                     /translation="MRGFFGKAIFVVLAVFIMMPLLGIEAVRASELQQHVYDRAHLLS
                     KAEIGKLESLSAKLGAKRDTDFIIITTKSTNGEDIADYTGDFYDRYGKGSTAILTIDM
                     TNREVFIAGFKKAEQYLDNSRLNSIRNTISSDLSNENYFEAFETYIQLSYKDMGIKPG
                     VNPDNIFFTWWFQLIAAIAVGGIAVSIMLYHAGGKVTVNGSTYMDQRTSDVIDQYDTY
                     IRTTVTRERKPSDKDSGSDGGVTKGGTSYSGSRGSF*"
     gene            654987..655751
                     /gene="ydjH"
                     /locus_tag="BSU_06200"
                     /old_locus_tag="BSU06200"
     CDS             655782..656753
                     /gene="ydjI"
                     /locus_tag="BSU_06210"
                     /old_locus_tag="BSU06210"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22720735; Product type
                     h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein"
                     /protein_id="NP_388502.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06210"
                     /db_xref="EnsemblGenomes-Tr:CAB12440"
                     /db_xref="InterPro:IPR033880"
                     /db_xref="InterPro:IPR036013"
                     /db_xref="SubtiList:BG12800"
                     /db_xref="UniProtKB/Swiss-Prot:O34789"
                     /translation="MSFFRNQLANVVEWEEFRDDMIFYKWNNREIKKGSRLIIRPGQD
                     AVFLNNGRVEGVFQDDGDYDIESEIIPFLSTLKGFKFGFNSGMRAEVLFVNTKEFTVR
                     WGTKQAINIPAAGMPGGMPIRANGTFNFKVQDYISLIDKIAGVKDQYFVEDIKTRIIS
                     ILDQLLMKWITREGKDMFNLQANAFDIAKGIQEDLDMQLISDGMTVTGFQIMSFNYPQ
                     EVQDMITKNASYGMVGDVNRYQQISMTDGMASGKMSGSGAASDMAGMMMGMNMANQMM
                     NQMNQNQQAQSSGPQSTGSGSKPNFCPNCGTKTGEANFCPNCGQKLV*"
     gene            655782..656753
                     /gene="ydjI"
                     /locus_tag="BSU_06210"
                     /old_locus_tag="BSU06210"
     downshifts      656743
                     /Source="Nicolas_upshifts"
                     /id="D300"
                     /incds=0
                     /nref=180
                     /ntot=247
                     /MaxReadThrough="2.71622"
                     /MaxDrop="5.81579"
                     /score="16.72046"
                     /energy="-11.1"
                     /TU="U477"
                     /idTUdmin="U477"
                     /TUdmin="-44"
                     /isTUend="FALSE"
     downshifts      656787
                     /Source="Nicolas_upshifts"
                     /id="D301"
                     /incds=0
                     /nref=1
                     /ntot=2
                     /MaxReadThrough="2.13813"
                     /MaxDrop="3.25329"
                     /score="16.72046"
                     /energy="-11.1"
                     /TU="NA"
                     /idTUdmin="U477"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(656800..657825)
                     /gene="ydjJ"
                     /locus_tag="BSU_06220"
                     /old_locus_tag="BSU06220"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane associated potassium channel;
                     prophage region 3"
                     /protein_id="NP_388503.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06220"
                     /db_xref="EnsemblGenomes-Tr:CAB12441"
                     /db_xref="GOA:O34733"
                     /db_xref="InterPro:IPR013099"
                     /db_xref="SubtiList:BG12801"
                     /db_xref="UniProtKB/Swiss-Prot:O34733"
                     /translation="MNEGYIIAGLLLLTAGMIDFLWTTLWLESGAGPITRCLSAWLWK
                     GCRKISGDHAKVLSMAGPLLLCLTLVIWISLFWSGWVLIYSSDPHSLMETQSKEPASW
                     SDRIYFSGYVMFTLGNGDLAPNGGLWKLVTIIETAQGLLTITFSVTYLISVLSAVNQK
                     RSFAQSVLSLGHDGTEIVHNAWNGKDFHDIDFLLVAASSELGKLTAQHNAFPILHFYH
                     STQHQESSIIAVAVLDEALTIFKYGIPEQYQPNQLHIKEARSSIKNYLDTVHTAYIHP
                     AEQAPPEPDISKLQQSGIPALSKQTFQIAVNSIKERRQLLLGIIQAGARKWPVQEQAI
                     GNAYSPK*"
     gene            complement(656800..657825)
                     /gene="ydjJ"
                     /locus_tag="BSU_06220"
                     /old_locus_tag="BSU06220"
     promotor_-10    complement(657857..657876)
                     /Source="Nicolas_upshift_promotors"
                     /id="U478"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=251
                     /SigmaFactorBS="ccacctatttttctctgtaaaatcaaacattcgttcaatTGT
                     TTCAgactcaggataaaAGGAAATAGAGAAGAAAATAaaagaaggctgacttaaggga
                     g"
                     /listShort="ydjJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(657875)
                     /Source="Nicolas_upshifts"
                     /id="U478"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=251
                     /SigmaFactorBS="ccacctatttttctctgtaaaatcaaacattcgttcaatTGT
                     TTCAgactcaggataaaAGGAAATAGAGAAGAAAATAaaagaaggctgacttaaggga
                     g"
                     /listShort="ydjJ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(657890..657896)
                     /Source="Nicolas_upshift_promotors"
                     /id="U478"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=251
                     /SigmaFactorBS="ccacctatttttctctgtaaaatcaaacattcgttcaatTGT
                     TTCAgactcaggataaaAGGAAATAGAGAAGAAAATAaaagaaggctgacttaaggga
                     g"
                     /listShort="ydjJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    658085..658092
                     /Source="Nicolas_upshift_promotors"
                     /id="U479"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=323
                     /SigmaFactorBS="tgattttccttttatagagtaaaaaattttcagaaatttaTA
                     TTGACTgaaagcgtttttatAATTATGATAATATCAGATAtaacaaaaatgtcactat
                     a"
                     /listShort="S222, iolT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        658105
                     /Source="Nicolas_upshifts"
                     /id="U479"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=323
                     /SigmaFactorBS="tgattttccttttatagagtaaaaaattttcagaaatttaTA
                     TTGACTgaaagcgtttttatAATTATGATAATATCAGATAtaacaaaaatgtcactat
                     a"
                     /listShort="S222, iolT"
                     /GFF_Attribute="listLong"
     S_feature       658107..658409
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_676139_676441"
                     /HighExp="M0t90, M40t90, Lbtran, T0.30H, BI, T1.0H,
                     M9-stat, S1, T1.30H, S0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.28450700000000001"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S222"
     promotor_-10    658107..658126
                     /Source="Nicolas_upshift_promotors"
                     /id="U479"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=323
                     /SigmaFactorBS="tgattttccttttatagagtaaaaaattttcagaaatttaTA
                     TTGACTgaaagcgtttttatAATTATGATAATATCAGATAtaacaaaaatgtcactat
                     a"
                     /listShort="S222, iolT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             658410..659831
                     /gene="iolT"
                     /locus_tag="BSU_06230"
                     /old_locus_tag="BSU06230"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11807058, 15849754, 16850406, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11807058, 15849754,
                     16850406, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inositol transporter"
                     /protein_id="NP_388504.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06230"
                     /db_xref="EnsemblGenomes-Tr:CAB12442"
                     /db_xref="GOA:O34718"
                     /db_xref="InterPro:IPR003663"
                     /db_xref="InterPro:IPR005828"
                     /db_xref="InterPro:IPR005829"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12802"
                     /db_xref="UniProtKB/Swiss-Prot:O34718"
                     /translation="MNKQGNQMSFLRTIILVSTFGGLLFGYDTGVLNGALPYMGEPDQ
                     LNLNAFTEGLVTSSLLFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPN
                     VTVMIISRFVLGIAVGGASVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAFVFNA
                     ILGTTMGDNSHVWRFMLVIASLPALFLFFGMIRMPESPRWLVSKGRKEDALRVLKKIR
                     DEKRAAAELQEIEFAFKKEDQLEKATFKDLSVPWVRRIVFIGLGIAIVQQITGVNSIM
                     YYGTEILRNSGFQTEAALIGNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTA
                     LLLIGIFSLVLEGSPALPYVVLSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMG
                     VTVFCLWMVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSVLFVKRFLPETKGLSLEQ
                     LEENFRAYDHSGAKKDSGAEVIG*"
     gene            658410..659831
                     /gene="iolT"
                     /locus_tag="BSU_06230"
                     /old_locus_tag="BSU06230"
     downshifts      659823
                     /Source="Nicolas_upshifts"
                     /id="D302"
                     /incds=0
                     /nref=11
                     /ntot=24
                     /MaxReadThrough="2.82455"
                     /MaxDrop="8.02371"
                     /score="11.3880907"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U479"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(659879)
                     /Source="Nicolas_upshifts"
                     /id="D303"
                     /incds=0
                     /nref=242
                     /ntot=272
                     /MaxReadThrough="1.00274"
                     /MaxDrop="9.32541"
                     /score="13.6781112"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U482"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     CDS             complement(659879..660919)
                     /gene="bdhA"
                     /locus_tag="BSU_06240"
                     /old_locus_tag="BSU06240"
                     /EC_number="1.1.1.4"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12469342, 18820069, 24525333, 26428232, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12469342, 18820069,
                     24525333, 26428232, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin reductase/2,3-butanediol dehydrogenase"
                     /protein_id="NP_388505.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06240"
                     /db_xref="EnsemblGenomes-Tr:CAB12443"
                     /db_xref="GOA:O34788"
                     /db_xref="InterPro:IPR002328"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR013154"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12803"
                     /db_xref="UniProtKB/Swiss-Prot:O34788"
                     /translation="MKAARWHNQKDIRIEHIEEPKTEPGKVKIKVKWCGICGSDLHEY
                     LGGPIFIPVDKPHPLTNETAPVTMGHEFSGEVVEVGEGVENYKVGDRVVVEPIFATHG
                     HQGAYNLDEQMGFLGLAGGGGGFSEYVSVDEELLFKLPDELSYEQGALVEPSAVALYA
                     VRSSKLKAGDKAAVFGCGPIGLLVIEALKAAGATDIYAVELSPERQQKAEELGAIIVD
                     PSKTDDVVAEIAERTGGGVDVAFEVTGVPVVLRQAIQSTTIAGETVIVSIWEKGAEIH
                     PNDIVIKERTVKGIIGYRDIFPAVLSLMKEGYFSADKLVTKKIVLDDLIEEGFGALIK
                     EKSQVKILVRPN*"
     gene            complement(659879..660919)
                     /gene="bdhA"
                     /locus_tag="BSU_06240"
                     /old_locus_tag="BSU06240"
     promotor_-35    660459..660468
                     /Source="Nicolas_upshift_promotors"
                     /id="U480"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1246
                     /SigmaFactorBS="agtttgcttgagcggacagcgtatagagcaactgcaGAAGGT
                     TCAAcgagcgcgccttgTTCATATGATAATTCATCAGgaagtttgaacaaaagctctt
                     c"
                     /listShort="S223"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    660482..660501
                     /Source="Nicolas_upshift_promotors"
                     /id="U480"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1246
                     /SigmaFactorBS="agtttgcttgagcggacagcgtatagagcaactgcaGAAGGT
                     TCAAcgagcgcgccttgTTCATATGATAATTCATCAGgaagtttgaacaaaagctctt
                     c"
                     /listShort="S223"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       660483..661018
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_678515_679050"
                     /HighExp="C30, Gly, S6, C90, S8, BT, S7, Sw, Fru, Lbstat"
                     /AntisenseName="bdhA"
                     /AntisenseCor="-0.174163895138467"
                     /AntisenseRegPval="-2.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S223"
     upshifts        660483
                     /Source="Nicolas_upshifts"
                     /id="U480"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1246
                     /SigmaFactorBS="agtttgcttgagcggacagcgtatagagcaactgcaGAAGGT
                     TCAAcgagcgcgccttgTTCATATGATAATTCATCAGgaagtttgaacaaaagctctt
                     c"
                     /listShort="S223"
                     /GFF_Attribute="listLong"
     S_feature       complement(660920..661214)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_678952_679246_c"
                     /HighExp="Lbtran, BI, T1.0H, M40t90, LBGstat, LoTm,
                     T0.30H, LPhT, Lbstat, ferm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S224"
     misc_feature    661019..661038
                     /Source="Nicolas_upshift_promotors"
                     /id="U481"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.994005994005994"
                     /xcortree=1752
                     /SigmaFactorBS="accggtcaatatgaactgttcacaaaatcgccatttttaaaa
                     ccaaaaaagaaatgaaaTTTTTATATAATATAATCTAcgtttttttgaaaaaaagaaa
                     c"
                     /listShort="S225"
                     /listLong="ydjM, ydjN"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       661020..661317
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_679052_679349"
                     /HighExp="G180, Paraq, Oxctl, H2O2, G135, G150, MG 5, C30,
                     UNK1, MG 15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S225"
     upshifts        661020
                     /Source="Nicolas_upshifts"
                     /id="U481"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig="0.994005994005994"
                     /xcortree=1752
                     /SigmaFactorBS="accggtcaatatgaactgttcacaaaatcgccatttttaaaa
                     ccaaaaaagaaatgaaaTTTTTATATAATATAATCTAcgtttttttgaaaaaaagaaa
                     c"
                     /listShort="S225"
                     /listLong="ydjM, ydjN"
     misc_feature    complement(661209..661223)
                     /Source="Nicolas_upshift_promotors"
                     /id="U482"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.598401598401598"
                     /psig="0.99000999000999"
                     /xcortree=3201
                     /SigmaFactorBS="tacaaagtcaaaaaagttacctctgctaaaataaaccatgga
                     agattatccTATTATAATAGCAGTattagagttataattattgatagagtagttgtcg
                     c"
                     /listShort="S224, bdhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(661214)
                     /Source="Nicolas_upshifts"
                     /id="U482"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.598401598401598"
                     /psig="0.99000999000999"
                     /xcortree=3201
                     /SigmaFactorBS="tacaaagtcaaaaaagttacctctgctaaaataaaccatgga
                     agattatccTATTATAATAGCAGTattagagttataattattgatagagtagttgtcg
                     c"
                     /listShort="S224, bdhA"
                     /GFF_Attribute="listLong"
     promotor_-35    661297
                     /Source="Nicolas_upshift_promotors"
                     /id="U483"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.462537462537463"
                     /psig="0.998001998001998"
                     /xcortree=3034
                     /SigmaFactorBS="cttttttgactttgtaacattactgtaaggatattgaaAtaa
                     aaaatagctggttgaTCGTGTATAATCTTCCTAGAtgttaacaaacagggggacgaaa
                     t"
                     /listShort="ydjM, ydjN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    661316..661335
                     /Source="Nicolas_upshift_promotors"
                     /id="U483"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.462537462537463"
                     /psig="0.998001998001998"
                     /xcortree=3034
                     /SigmaFactorBS="cttttttgactttgtaacattactgtaaggatattgaaAtaa
                     aaaatagctggttgaTCGTGTATAATCTTCCTAGAtgttaacaaacagggggacgaaa
                     t"
                     /listShort="ydjM, ydjN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        661319
                     /Source="Nicolas_upshifts"
                     /id="U483"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.462537462537463"
                     /psig="0.998001998001998"
                     /xcortree=3034
                     /SigmaFactorBS="cttttttgactttgtaacattactgtaaggatattgaaAtaa
                     aaaatagctggttgaTCGTGTATAATCTTCCTAGAtgttaacaaacagggggacgaaa
                     t"
                     /listShort="ydjM, ydjN"
                     /GFF_Attribute="listLong"
     CDS             661358..661729
                     /gene="walM"
                     /locus_tag="BSU_06250"
                     /old_locus_tag="BSU06250"
                     /experiment="publication(s) with functional evidences,
                     PMID:17581128, 20487291"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17581128, 20487291;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="protein involved in cell wall metabolism"
                     /protein_id="NP_388506.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06250"
                     /db_xref="EnsemblGenomes-Tr:CAB12444"
                     /db_xref="InterPro:IPR009009"
                     /db_xref="InterPro:IPR036908"
                     /db_xref="SubtiList:BG11036"
                     /db_xref="UniProtKB/Swiss-Prot:P40775"
                     /translation="MLKKVILAAFILVGSTLGAFSFSSDASAKHVNGNITWYNGVGKK
                     GSSGKKLGHWDCATKIGFDVPRNGTKIRAYAKAKPKKVITVYKNDVGRMPNAVLDVSP
                     KAFKALGYPLSKGKVAGHYSY*"
     gene            661358..661729
                     /gene="walM"
                     /locus_tag="BSU_06250"
                     /old_locus_tag="BSU06250"
     downshifts      661715
                     /Source="Nicolas_upshifts"
                     /id="D304"
                     /incds=0
                     /nref=5
                     /ntot=52
                     /MaxReadThrough="5.74148"
                     /MaxDrop="2.8439"
                     /score="-1.55787542"
                     /energy="-7.4"
                     /TU="U483"
                     /idTUdmin="U481"
                     /TUdmin=418
                     /isTUend="FALSE"
     CDS             661795..662841
                     /gene="ydjN"
                     /locus_tag="BSU_06260"
                     /old_locus_tag="BSU06260"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388507.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06260"
                     /db_xref="EnsemblGenomes-Tr:CAB12445"
                     /db_xref="InterPro:IPR011659"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="SubtiList:BG12804"
                     /db_xref="UniProtKB/Swiss-Prot:O34353"
                     /translation="MKKRIILLLAVIIAAAAAGVAFYVAKDKGHEKAADVSVNTESGD
                     ELLVSITDTDLLTKYYENDKVIHEEKLTSYPAFALDQKQQVLYYTGNNEQNEMRLFKL
                     DLKSHKKTMLYKGAESADSLFLSKDRSTIYFRLGKADESNFRIAAFDLKTKKYKNLYP
                     AANDQDDTVSSFFYNQKNDSFALLHYSVEEDYKKTDEANEKGIDPEPTTIHFAEGRQN
                     KFNELKSLNQFISDIAVSDDDKRILFTSYTQKGTEQTASIQMLNADTKKYESIISNQK
                     SFKLLIDAQPQFSKDGKNIYFLAEAKGAKKLKDETGREAKVRTIYSYSLENKTFKKVW
                     ENPNGIINSFFVIN*"
     gene            661795..662841
                     /gene="ydjN"
                     /locus_tag="BSU_06260"
                     /old_locus_tag="BSU06260"
     downshifts      662815
                     /Source="Nicolas_upshifts"
                     /id="D305"
                     /incds=0
                     /nref=41
                     /ntot=177
                     /MaxReadThrough="1.73572"
                     /MaxDrop="4.49184"
                     /score="21.8200083"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U483"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(662875..663033)
                     /gene="ydzJ"
                     /locus_tag="BSU_06269"
                     /old_locus_tag="BSU06269"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097689.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06269"
                     /db_xref="EnsemblGenomes-Tr:CAX52576"
                     /db_xref="GOA:O24817"
                     /db_xref="UniProtKB/Swiss-Prot:O24817"
                     /translation="MISNQQQKDLKKRAAFKKLNVAMNSYVELLFLSVPLIHIFKWLG
                     SLALHLIH*"
     gene            complement(662875..663033)
                     /gene="ydzJ"
                     /locus_tag="BSU_06269"
                     /old_locus_tag="BSU06269"
     downshifts      complement(662891)
                     /Source="Nicolas_upshifts"
                     /id="D306"
                     /incds=0
                     /nref=23
                     /ntot=155
                     /MaxReadThrough="0.7906"
                     /MaxDrop="3.61386"
                     /score="9.10659473"
                     /energy="-10.1"
                     /TU="NA"
                     /idTUdmin="U487"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(663090..663222)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_681122_681254_c"
                     /HighExp="LoTm, S8, S5, S6, S4, B36, S7, Cold, B60, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF, SigWXY"
                     /TUshortPSig="0.994, 1, 1"
                     /TUlongSig="SigK"
                     /TUlongPSig="0.994"
                     /label="S226"
     downshifts      complement(663133)
                     /Source="Nicolas_upshifts"
                     /id="D307"
                     /incds=0
                     /nref=57
                     /ntot=272
                     /MaxReadThrough="3.03092"
                     /MaxDrop="6.46708"
                     /score="5.41743429"
                     /energy="-8.4"
                     /TU="U484,U486,U487"
                     /idTUdmin="U484"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     CDS             complement(663223..663432)
                     /gene="ydjO"
                     /locus_tag="BSU_06270"
                     /old_locus_tag="BSU06270"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 28197687"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388508.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06270"
                     /db_xref="EnsemblGenomes-Tr:CAB12446"
                     /db_xref="InterPro:IPR025916"
                     /db_xref="SubtiList:BG12805"
                     /db_xref="UniProtKB/Swiss-Prot:O34759"
                     /translation="MSYYNKRNQEPLPKEDVSTWECTKEDCNGWTRKNFASSDTPLCP
                     LCGSKMVDGIRSLVNLQNNSQTKTS*"
     gene            complement(663223..663432)
                     /gene="ydjO"
                     /locus_tag="BSU_06270"
                     /old_locus_tag="BSU06270"
     promotor_-10    complement(663465..663484)
                     /Source="Nicolas_upshift_promotors"
                     /id="U484"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.66033966033966"
                     /psig="0.994005994005994"
                     /xcortree=586
                     /SigmaFactorBS="tggggttattggaaagtcataaagaaaaaggaattAggagat
                     tagggaaaagTATGAGACAATAGGAAATGTgcagtaaaatacatgagggaagaagtga
                     c"
                     /listShort="ydjO, S226"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(663476)
                     /Source="Nicolas_upshifts"
                     /id="U484"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.66033966033966"
                     /psig="0.994005994005994"
                     /xcortree=586
                     /SigmaFactorBS="tggggttattggaaagtcataaagaaaaaggaattAggagat
                     tagggaaaagTATGAGACAATAGGAAATGTgcagtaaaatacatgagggaagaagtga
                     c"
                     /listShort="ydjO, S226"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(663501)
                     /Source="Nicolas_upshift_promotors"
                     /id="U484"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.66033966033966"
                     /psig="0.994005994005994"
                     /xcortree=586
                     /SigmaFactorBS="tggggttattggaaagtcataaagaaaaaggaattAggagat
                     tagggaaaagTATGAGACAATAGGAAATGTgcagtaaaatacatgagggaagaagtga
                     c"
                     /listShort="ydjO, S226"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(663515..664330)
                     /gene="ydjP"
                     /locus_tag="BSU_06280"
                     /old_locus_tag="BSU06280"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9987136; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacrylate hydrolase"
                     /protein_id="NP_388509.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06280"
                     /db_xref="EnsemblGenomes-Tr:CAB12447"
                     /db_xref="GOA:O34592"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12806"
                     /db_xref="UniProtKB/Swiss-Prot:O34592"
                     /translation="MPYIILEDQTRLYYETHGSGTPILFIHGVLMSGQFFHKQFSVLS
                     ANYQCIRLDLRGHGESDKVLHGHTISQYARDIREFLNAMELDHVVLAGWSMGAFVVWD
                     YLNQFGNDNIQAAVIIDQSASDYQWEGWEHGPFDFDGLKTAMHAIQTDPLPFYESFIQ
                     NMFAEPPAETETEWMLAEILKQPAAISSTILFNQTAADYRGTLQNINVPALLCFGEDK
                     KFFSTAAGEHLRSNIPNATLVTFPKSSHCPFLEEPDAFNSTLLSFLDGVIGKS*"
     gene            complement(663515..664330)
                     /gene="ydjP"
                     /locus_tag="BSU_06280"
                     /old_locus_tag="BSU06280"
     promotor_-35    664157..664166
                     /Source="Nicolas_upshift_promotors"
                     /id="U485"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1434
                     /SigmaFactorBS="tgggaaatggtgtggccgtgaagcactttgtcagattcGCCG
                     TGTCCTctaagatcaagaCGAATACATTGATAATTGGCagaaagcaccgaaaattgtt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    664179..664198
                     /Source="Nicolas_upshift_promotors"
                     /id="U485"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1434
                     /SigmaFactorBS="tgggaaatggtgtggccgtgaagcactttgtcagattcGCCG
                     TGTCCTctaagatcaagaCGAATACATTGATAATTGGCagaaagcaccgaaaattgtt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        664179
                     /Source="Nicolas_upshifts"
                     /id="U485"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1434
                     /SigmaFactorBS="tgggaaatggtgtggccgtgaagcactttgtcagattcGCCG
                     TGTCCTctaagatcaagaCGAATACATTGATAATTGGCagaaagcaccgaaaattgtt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             complement(664343..665332)
                     /gene="yeaA"
                     /locus_tag="BSU_06290"
                     /old_locus_tag="BSU06290"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388510.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06290"
                     /db_xref="EnsemblGenomes-Tr:CAB12448"
                     /db_xref="InterPro:IPR025062"
                     /db_xref="SubtiList:BG12210"
                     /db_xref="UniProtKB/Swiss-Prot:O34803"
                     /translation="MLTHDLHEKTKHYISIYAELKTKLKWKVSHDQILMLISSAYIVN
                     KREFDFQRFYDLSSYIKSNIGSFSTLNSHHRFTVASILDIHFQHEAKQTFQTFIDVYN
                     EMVKLGYKRDMFTYLSALILLTGKSETTNQKEQMNMGLAVYQQMKKNHYFLTSTQNVP
                     LAVLLGENGKGLQALQKAETCYQLLAANGFKKGQYLHQVSHILALQSEKEPEMLVSAC
                     KQIYQSITESVKKTKDYHYPDLALLTFLEEPDIKTVLCITDELNQEKAFKWQKEMNFK
                     IAVSLYLSEHMEKNLLMESGLYTAIETVIQAQQAAATAAIISSTAASHTHDGN*"
     gene            complement(664343..665332)
                     /gene="yeaA"
                     /locus_tag="BSU_06290"
                     /old_locus_tag="BSU06290"
     promotor_-10    complement(665197..665215)
                     /Source="Nicolas_upshift_promotors"
                     /id="U486"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1147
                     /SigmaFactorBS="aattaaaatggaaagtttcacacgatcagATATTAatgctca
                     tttcttctGCATATATTGTGAATAAAAgagagtttgattttcagcgcttttatgattt
                     g"
                     /listShort="ydjP, ydjO, S226"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(665205)
                     /Source="Nicolas_upshifts"
                     /id="U486"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1147
                     /SigmaFactorBS="aattaaaatggaaagtttcacacgatcagATATTAatgctca
                     tttcttctGCATATATTGTGAATAAAAgagagtttgattttcagcgcttttatgattt
                     g"
                     /listShort="ydjP, ydjO, S226"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(665231..665236)
                     /Source="Nicolas_upshift_promotors"
                     /id="U486"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1147
                     /SigmaFactorBS="aattaaaatggaaagtttcacacgatcagATATTAatgctca
                     tttcttctGCATATATTGTGAATAAAAgagagtttgattttcagcgcttttatgattt
                     g"
                     /listShort="ydjP, ydjO, S226"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(665354..665369)
                     /Source="Nicolas_upshift_promotors"
                     /id="U487"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1666
                     /SigmaFactorBS="aaataacccgacaaacttgcctctagcaggcaagttttttct
                     ttaTGAAACCTTTggccctatttaTCGTATTACGTAAAAAcaacaaaaggagctgctt
                     t"
                     /listShort="yeaA, ydjP, ydjO, S226, ydzJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(665375)
                     /Source="Nicolas_upshifts"
                     /id="U487"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1666
                     /SigmaFactorBS="aaataacccgacaaacttgcctctagcaggcaagttttttct
                     ttaTGAAACCTTTggccctatttaTCGTATTACGTAAAAAcaacaaaaggagctgctt
                     t"
                     /listShort="yeaA, ydjP, ydjO, S226, ydzJ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(665381..665390)
                     /Source="Nicolas_upshift_promotors"
                     /id="U487"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1666
                     /SigmaFactorBS="aaataacccgacaaacttgcctctagcaggcaagttttttct
                     ttaTGAAACCTTTggccctatttaTCGTATTACGTAAAAAcaacaaaaggagctgctt
                     t"
                     /listShort="yeaA, ydjP, ydjO, S226, ydzJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(665430..666971)
                     /gene="cotA"
                     /locus_tag="BSU_06300"
                     /old_locus_tag="BSU06300"
                     /EC_number="1.3.3.5"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11514528, 12637519, 16391148, 17242517, 18031270,
                     19933362, 22112278, 25259857, 27050268"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11514528, 12637519,
                     16391148, 17242517, 18031270, 19933362, 22112278,
                     25259857, 27050268; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="outer spore coat copper-dependent promiscuous
                     laccase"
                     /protein_id="NP_388511.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06300"
                     /db_xref="EnsemblGenomes-Tr:CAB12449"
                     /db_xref="GOA:P07788"
                     /db_xref="InterPro:IPR001117"
                     /db_xref="InterPro:IPR008972"
                     /db_xref="InterPro:IPR011706"
                     /db_xref="InterPro:IPR011707"
                     /db_xref="PDB:1GSK"
                     /db_xref="PDB:1OF0"
                     /db_xref="PDB:1W6L"
                     /db_xref="PDB:1W6W"
                     /db_xref="PDB:1W8E"
                     /db_xref="PDB:2BHF"
                     /db_xref="PDB:2WSD"
                     /db_xref="PDB:2X87"
                     /db_xref="PDB:2X88"
                     /db_xref="PDB:3ZDW"
                     /db_xref="PDB:4A66"
                     /db_xref="PDB:4A67"
                     /db_xref="PDB:4A68"
                     /db_xref="PDB:4AKO"
                     /db_xref="PDB:4AKP"
                     /db_xref="PDB:4AKQ"
                     /db_xref="PDB:4Q89"
                     /db_xref="PDB:4Q8B"
                     /db_xref="PDB:4YVN"
                     /db_xref="PDB:4YVU"
                     /db_xref="SubtiList:BG10490"
                     /db_xref="UniProtKB/Swiss-Prot:P07788"
                     /translation="MTLEKFVDALPIPDTLKPVQQSKEKTYYEVTMEECTHQLHRDLP
                     PTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKT
                     VVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALT
                     RLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPS
                     LPNPSIVPAFCGETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQI
                     GSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGCGGDVNPETDANI
                     MQFRVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPVLLLNNKR
                     WHDPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYT
                     GPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRPMDI
                     TDPHK*"
     gene            complement(665430..666971)
                     /gene="cotA"
                     /locus_tag="BSU_06300"
                     /old_locus_tag="BSU06300"
     downshifts      complement(665443)
                     /Source="Nicolas_upshifts"
                     /id="D308"
                     /incds=0
                     /nref=46
                     /ntot=93
                     /MaxReadThrough="2.97674"
                     /MaxDrop="5.60726"
                     /score="22.3755425"
                     /energy="-9.1"
                     /TU="U488"
                     /idTUdmin="U488"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     promotor_-10    complement(667002..667021)
                     /Source="Nicolas_upshift_promotors"
                     /id="U488"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1297
                     /SigmaFactorBS="tcttcttcgggcgggctgcagcacgaagatttTTTGTAACCA
                     tcacgtccttattGTCATTAACTATAGTACCAAtttggaaaatttagataaggacaga
                     t"
                     /listShort="cotA"
                     /listLong="yeaA, ydjP, ydjO, S226"
                     /label="promotor_-10"
     upshifts        complement(667016)
                     /Source="Nicolas_upshifts"
                     /id="U488"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1297
                     /SigmaFactorBS="tcttcttcgggcgggctgcagcacgaagatttTTTGTAACCA
                     tcacgtccttattGTCATTAACTATAGTACCAAtttggaaaatttagataaggacaga
                     t"
                     /listShort="cotA"
                     /listLong="yeaA, ydjP, ydjO, S226"
     promotor_-35    complement(667035..667044)
                     /Source="Nicolas_upshift_promotors"
                     /id="U488"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1297
                     /SigmaFactorBS="tcttcttcgggcgggctgcagcacgaagatttTTTGTAACCA
                     tcacgtccttattGTCATTAACTATAGTACCAAtttggaaaatttagataaggacaga
                     t"
                     /listShort="cotA"
                     /listLong="yeaA, ydjP, ydjO, S226"
                     /label="promotor_-35"
     CDS             complement(667123..668532)
                     /gene="gabP"
                     /locus_tag="BSU_06310"
                     /old_locus_tag="BSU06310"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16547045, 16850406, 8951816, 9677314,
                     24142252"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16547045,
                     16850406, 8951816, 9677314, 24142252; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-aminobutyrate (GABA) permease; proline
                     permease"
                     /protein_id="NP_388512.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06310"
                     /db_xref="EnsemblGenomes-Tr:CAB12450"
                     /db_xref="GOA:P46349"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004840"
                     /db_xref="InterPro:IPR004841"
                     /db_xref="InterPro:IPR011265"
                     /db_xref="SubtiList:BG11328"
                     /db_xref="UniProtKB/Swiss-Prot:P46349"
                     /translation="MNQSQSGLKKELKTRHMTMISIAGVIGAGLFVGSGSVIHSTGPG
                     AVVSYALAGLLVIFIMRMLGEMSAVNPTSGSFSQYAHDAIGPWAGFTIGWLYWFFWVI
                     VIAIEAIAGAGIIQYWFHDIPLWLTSLILTIVLTLTNVYSVKSFGEFEYWFSLIKVVT
                     IIAFLIVGFAFIFGFAPGSEPVGFSNLTGKGGFFPEGISSVLLGIVVVIFSFMGTEIV
                     AIAAGETSNPIESVTKATRSVVWRIIVFYVGSIAIVVALLPWNSANILESPFVAVLEH
                     IGVPAAAQIMNFIVLTAVLSCLNSGLYTTSRMLYSLAERNEAPRRFMKLSKKGVPVQA
                     IVAGTFFSYIAVVMNYFSPDTVFLFLVNSSGAIALLVYLVIAVSQLKMRKKLEKTNPE
                     ALKIKMWLFPFLTYLTIIAICGILVSMAFIDSMRDELLLTGVITGIVLISYLVFRKRK
                     VSEKAAANPVTQQQPDILP*"
     gene            complement(667123..668532)
                     /gene="gabP"
                     /locus_tag="BSU_06310"
                     /old_locus_tag="BSU06310"
     downshifts      complement(667137)
                     /Source="Nicolas_upshifts"
                     /id="D309"
                     /incds=0
                     /nref=124
                     /ntot=216
                     /MaxReadThrough="3.22899"
                     /MaxDrop="5.0359"
                     /score="18.985683"
                     /energy="-13.5"
                     /TU="U489"
                     /idTUdmin="U489"
                     /TUdmin="-110"
                     /isTUend="FALSE"
     CDS             complement(668570..668857)
                     /gene="ydzX"
                     /locus_tag="BSU_06319"
                     /old_locus_tag="BSU06319"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097690.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06319"
                     /db_xref="EnsemblGenomes-Tr:CAX52577"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X2"
                     /translation="MIHPPQKNSDEGTLFLSSNLFAPPKIPSNPRTPVLLAFYRIVNI
                     TQNHTANKKRNIFSTHSLKAQTKHYKFEISWYIFLHEFSTNCIFMIEFQLS*"
     gene            complement(668570..668857)
                     /gene="ydzX"
                     /locus_tag="BSU_06319"
                     /old_locus_tag="BSU06319"
     misc_feature    complement(668573..668592)
                     /Source="Nicolas_upshift_promotors"
                     /id="U489"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.447552447552448"
                     /psig="0.996003996003996"
                     /xcortree=2898
                     /SigmaFactorBS="tttgaaataagctggtatattttcttacacgaattttcgaca
                     aactgtatatttaTGATAGAGTTTCAATTATCAtaatattcagtaatgattgcatttt
                     a"
                     /listShort="gabP"
                     /listLong="cotA"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(668587)
                     /Source="Nicolas_upshifts"
                     /id="U489"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.447552447552448"
                     /psig="0.996003996003996"
                     /xcortree=2898
                     /SigmaFactorBS="tttgaaataagctggtatattttcttacacgaattttcgaca
                     aactgtatatttaTGATAGAGTTTCAATTATCAtaatattcagtaatgattgcatttt
                     a"
                     /listShort="gabP"
                     /listLong="cotA"
     promotor_-35    668863..668870
                     /Source="Nicolas_upshift_promotors"
                     /id="U490"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.999000999001"
                     /xcortree=1749
                     /SigmaFactorBS="cgtcactatttttctgtggcgggtgaatcatgtttcTGTAGA
                     CCcactgcggatcagctTTGTAAGATAATAATAGGAAaatgtgagcgagaggaggttt
                     t"
                     /listShort="yeaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    668886..668905
                     /Source="Nicolas_upshift_promotors"
                     /id="U490"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.999000999001"
                     /xcortree=1749
                     /SigmaFactorBS="cgtcactatttttctgtggcgggtgaatcatgtttcTGTAGA
                     CCcactgcggatcagctTTGTAAGATAATAATAGGAAaatgtgagcgagaggaggttt
                     t"
                     /listShort="yeaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        668887
                     /Source="Nicolas_upshifts"
                     /id="U490"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.999000999001"
                     /xcortree=1749
                     /SigmaFactorBS="cgtcactatttttctgtggcgggtgaatcatgtttcTGTAGA
                     CCcactgcggatcagctTTGTAAGATAATAATAGGAAaatgtgagcgagaggaggttt
                     t"
                     /listShort="yeaB"
                     /GFF_Attribute="listLong"
     CDS             668930..669802
                     /gene="mneS"
                     /locus_tag="BSU_06320"
                     /old_locus_tag="BSU06320"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:27748968"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 27748968; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary Mn(II) exporter, promiscuous"
                     /protein_id="NP_388513.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06320"
                     /db_xref="EnsemblGenomes-Tr:CAB12451"
                     /db_xref="GOA:P46348"
                     /db_xref="InterPro:IPR002524"
                     /db_xref="InterPro:IPR027469"
                     /db_xref="InterPro:IPR027470"
                     /db_xref="InterPro:IPR036837"
                     /db_xref="SubtiList:BG11329"
                     /db_xref="UniProtKB/Swiss-Prot:P46348"
                     /translation="MERYDELKKGESGALVSIAAYLVLSAIKLIIGYLFHSEALTADG
                     LNNTTDIIASVAVLIGLRISQKPPDEDHPYGHFRAETIASLIASFIMMVVGLQVLFSA
                     GESIFSAKQETPDMIAAWTAAGGAVLMLIVYRYNKRLAKKVKSQALLAAAADNKSDAF
                     VSIGTFIGIVAAQFHLAWIDTVTAFVIGLLICKTAWDIFKESSHSLTDGFDIKDISAY
                     KQTIEKISGVSRLKDIKARYLGSTVHVDVVVEVSADLNITESHDIANEIERRMKEEHA
                     IDYSHVHMEPLEQK*"
     gene            668930..669802
                     /gene="mneS"
                     /locus_tag="BSU_06320"
                     /old_locus_tag="BSU06320"
     downshifts      669767
                     /Source="Nicolas_upshifts"
                     /id="D310"
                     /incds=0
                     /nref=2
                     /ntot=88
                     /MaxReadThrough="1.72291"
                     /MaxDrop="2.86431"
                     /score="24.8167732"
                     /energy="-10.2"
                     /TU="U490"
                     /idTUdmin="U490"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     downshifts      complement(670042)
                     /Source="Nicolas_upshifts"
                     /id="D311"
                     /incds=0
                     /nref=1
                     /ntot=3
                     /MaxReadThrough="0.65827"
                     /MaxDrop="3.33542"
                     /score="-0.424989042"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U489"
                     /TUdmin="-3015"
                     /isTUend="FALSE"
     misc_feature    670096..670115
                     /Source="Nicolas_upshift_promotors"
                     /id="U491"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig=1
                     /xcortree=2248
                     /SigmaFactorBS="ctttattggtaacaatttgctagaatcgtttttttatacaga
                     ttgcttttTGTGGTAAAGTTAGGTTACAttatgatgaattttgtagatgactaggagg
                     a"
                     /listShort="yeaC, yeaD, yebA"
                     /listLong="S227, guaA"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        670106
                     /Source="Nicolas_upshifts"
                     /id="U491"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.932067932067932"
                     /psig=1
                     /xcortree=2248
                     /SigmaFactorBS="ctttattggtaacaatttgctagaatcgtttttttatacaga
                     ttgcttttTGTGGTAAAGTTAGGTTACAttatgatgaattttgtagatgactaggagg
                     a"
                     /listShort="yeaC, yeaD, yebA"
                     /listLong="S227, guaA"
     CDS             670152..671114
                     /gene="yeaC"
                     /locus_tag="BSU_06330"
                     /old_locus_tag="BSU06330"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 21907250, 26933057;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative MoxR-like ATPase"
                     /protein_id="NP_388514.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06330"
                     /db_xref="EnsemblGenomes-Tr:CAB12452"
                     /db_xref="GOA:P94474"
                     /db_xref="InterPro:IPR011703"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12211"
                     /db_xref="UniProtKB/Swiss-Prot:P94474"
                     /translation="MAYQEDLHPLLGKAVEHINRVMVGKRDIAILSLAALLAKGHVLL
                     EDVPGVGKTMMVRALAKSIGADFKRIQFTPDLLPSDVTGVSIYNAKTMEFEYRPGPIM
                     GNIVLADEINRTSPKTQSALLEAMEEGSVTVDGHTMQLADPFFVMATQNPVEYEGTYP
                     LPEAQLDRFLFKLRMGYPSFNEELDVLSLQEKSHPIETLEPVIAKEDFIFLQREVQNV
                     RADDSIKEYIVEIVQKTRQHPSVQLGVSPRGSIALMKAAQAYALLHHRDYVIPDDIQY
                     LAPFTLPHRMMLHPEAKFEGIQAEAIVREIMSAVKVPVQRSAVR*"
     gene            670152..671114
                     /gene="yeaC"
                     /locus_tag="BSU_06330"
                     /old_locus_tag="BSU06330"
     CDS             671114..672310
                     /gene="yeaD"
                     /locus_tag="BSU_06340"
                     /old_locus_tag="BSU06340"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388515.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06340"
                     /db_xref="EnsemblGenomes-Tr:CAB12453"
                     /db_xref="InterPro:IPR002881"
                     /db_xref="InterPro:IPR036465"
                     /db_xref="SubtiList:BG12212"
                     /db_xref="UniProtKB/Swiss-Prot:P94475"
                     /translation="MNKKWQWLVYGWKLIILTLLTAAVFSYAMFQGGFVSWFLFYAFL
                     PFVLYAGLLALYPLRSFQASRQMDKTQLHAGDRLGVTVTLRRKLPFPLMYMVIEDCLP
                     EGIESLNRDGAAAKRLVFPWFKRSMTMSYELARVPRGEHHFHSVRVRTGDVLGLIEKT
                     AFFELDDTLFVYPFYQRFSYQVNERHQEDGVSGSSPIHQHHSSVAASVRNYQPGDRFA
                     ALDWKTSARRSQLMTKEFEPSRSKNLFLLMDRFSSDAFEEVVSVTASILHSVLKNGAG
                     AGLASIGKEKNIFPIQEGDQHFKHMLRHLAIAHCDAADPISRYAREELGKPSVRQADQ
                     VVVTGQLTEDMLHLAEIGGGRVTVILAKEKDAELSQAENVMIERMMKRQIRVRIMRGG
                     RVSRVV*"
     gene            671114..672310
                     /gene="yeaD"
                     /locus_tag="BSU_06340"
                     /old_locus_tag="BSU06340"
     CDS             672332..674545
                     /gene="yebA"
                     /locus_tag="BSU_06350"
                     /old_locus_tag="BSU06350"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388516.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06350"
                     /db_xref="EnsemblGenomes-Tr:CAB12454"
                     /db_xref="GOA:P94476"
                     /db_xref="InterPro:IPR002931"
                     /db_xref="InterPro:IPR025403"
                     /db_xref="InterPro:IPR036985"
                     /db_xref="SubtiList:BG12213"
                     /db_xref="UniProtKB/Swiss-Prot:P94476"
                     /translation="MPHDDHKGSRLSLLLFYFLAFLLLWEWLRPLDSFTETKHTGFFS
                     VFIGLTFLLTFFRMRWFVTVPFCVIFTLISIHILFYQGSIFDLSWVSSFLQDVYLNIT
                     LIQSGQWNDMIPSFRTLLFFVLLWLLVYLLHYWVIYQRRILFFFLMTVAYITILDTFT
                     PYDATFAVIRIVLIGFFMLGLLYLERIKLMERITLPKTSVLKWFLPLSVLVLAATGFG
                     LAAPKSEPAWPDPVPFLKKITHQDRVSAGESKIGYGNHDESLGGPFQQDATPVFTWQG
                     KERTYFRVETKDTYTGKGWIETDTGMSYQLSNGKVENLWFDHKVATERRTVRVKVDKH
                     YGYNHLMYPIGAETIQPKQAVSLEMNGNTEQISPISEQAGEIRNMGNYTVTYNSPVYK
                     LDELRKVKVRKNSEEYTFSDRYMQLPDSLPERVRTLAIKLTQDHDNMFDKVKAVEDYL
                     GSNAFTYETENVTIPKNDEDYVDQFLFETKMGYCDNFSSAMVVLLRSAGIPARWVKGY
                     TSGEYKEAGNKNGSIYEVTNNNAHSWVEVYFPEQGWVTFEPTKGFTNPAQFTSSDTKD
                     SGSDSSSSPKKAKEKQKEEKKQPQKEEKQKEKREPAVSKKPSASHTNAGAGLYAALAV
                     LAVLLVAAVLLYVFRSLWIPVFAVRKLKRRSDQHAFFEAYGALLKQLKRKGLPKRDSE
                     TLRDYAKRIDEKYDIEDMSKLTLSYERALYRNEDSSALWNDSRELWENLIKRRWS*"
     gene            672332..674545
                     /gene="yebA"
                     /locus_tag="BSU_06350"
                     /old_locus_tag="BSU06350"
     promotor_-35    674540..674547
                     /Source="Nicolas_upshift_promotors"
                     /id="U492"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.912087912087912"
                     /psig="0.999000999001"
                     /xcortree=2555
                     /SigmaFactorBS="aaatttaattaaaagaagatggTCTTGACCgcttatcgacgt
                     gtTGTTAGAATTAGTGAATATTatcggagtctgggagcgagttggcctgactccggca
                     a"
                     /listShort="S227, guaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    674562..674581
                     /Source="Nicolas_upshift_promotors"
                     /id="U492"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.912087912087912"
                     /psig="0.999000999001"
                     /xcortree=2555
                     /SigmaFactorBS="aaatttaattaaaagaagatggTCTTGACCgcttatcgacgt
                     gtTGTTAGAATTAGTGAATATTatcggagtctgggagcgagttggcctgactccggca
                     a"
                     /listShort="S227, guaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       674578..674707
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_692610_692739"
                     /HighExp="G180, Oxctl, G135, LBGexp, G150, Paraq, C30,
                     LPh, MG 25, C90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.63292099999999996"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S227"
     upshifts        674578
                     /Source="Nicolas_upshifts"
                     /id="U492"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.912087912087912"
                     /psig="0.999000999001"
                     /xcortree=2555
                     /SigmaFactorBS="aaatttaattaaaagaagatggTCTTGACCgcttatcgacgt
                     gtTGTTAGAATTAGTGAATATTatcggagtctgggagcgagttggcctgactccggca
                     a"
                     /listShort="S227, guaA"
                     /GFF_Attribute="listLong"
     CDS             674708..676249
                     /gene="guaA"
                     /locus_tag="BSU_06360"
                     /old_locus_tag="BSU06360"
                     /EC_number="6.3.5.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 1312531, 21856856; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthetase"
                     /protein_id="NP_388517.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06360"
                     /db_xref="EnsemblGenomes-Tr:CAB12455"
                     /db_xref="GOA:P29727"
                     /db_xref="InterPro:IPR001674"
                     /db_xref="InterPro:IPR004739"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR017926"
                     /db_xref="InterPro:IPR022310"
                     /db_xref="InterPro:IPR022955"
                     /db_xref="InterPro:IPR025777"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG10647"
                     /db_xref="UniProtKB/Swiss-Prot:P29727"
                     /translation="MTKLVNEMILVLDFGSQYNQLITRRIREFGVYSELHPHTLTAEE
                     IKKMNPKGIILSGGPNSVYDENSFRCDEKIFELDIPVLGICYGMQLMTHYLGGKVEAA
                     SQREYGKANIRIEGTPDLFRDLPNEQVVWMSHGDLVVEVPEGFTVDATSHHCPNSAMS
                     KADKKWYGVQFHPEVRHSEYGNDLLKNFVFGVCECEGEWSMENFIEIEMQKIRETVGD
                     KQVLCALSGGVDSSVVAVLIHKAIGDQLTCIFVDHGLLRKGEAEGVMKTFSEGFNMNV
                     IKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDEADKLKGIDYLAQGTLYTDIIE
                     SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRALGTELGIPDEIVWRQPFP
                     GPGLGIRVLGEVTEEKLEIVRESDAILREEIANHGLERDIWQYFTVLPDIRSVGVMGD
                     ARTYDYTIGIRAVTSIDGMTSDWARIPWDVLEVISTRIVNEVKHINRVVYDITSKPPA
                     TIEWE*"
     gene            674708..676249
                     /gene="guaA"
                     /locus_tag="BSU_06360"
                     /old_locus_tag="BSU06360"
     downshifts      676235
                     /Source="Nicolas_upshifts"
                     /id="D312"
                     /incds=0
                     /nref=247
                     /ntot=268
                     /MaxReadThrough="2.12151"
                     /MaxDrop="7.3702"
                     /score="22.5795134"
                     /energy="-18.5"
                     /TU="NA"
                     /idTUdmin="U492"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    676356..676360
                     /Source="Nicolas_upshift_promotors"
                     /id="U493"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=2631
                     /SigmaFactorBS="cgattttgcgcgactattgttcgctttttgTATTGttttttc
                     aaaatgaaCTTGGTACAATAGACACAGAaatcaaataagatgaattcgtataatcgcg
                     g"
                     /listShort="NA, pbuG"
                     /listLong="S228, yebC"
                     /label="promotor_-35"
     promotor_-10    676376..676395
                     /Source="Nicolas_upshift_promotors"
                     /id="U493"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=2631
                     /SigmaFactorBS="cgattttgcgcgactattgttcgctttttgTATTGttttttc
                     aaaatgaaCTTGGTACAATAGACACAGAaatcaaataagatgaattcgtataatcgcg
                     g"
                     /listShort="NA, pbuG"
                     /listLong="S228, yebC"
                     /label="promotor_-10"
     upshifts        676386
                     /Source="Nicolas_upshifts"
                     /id="U493"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=2631
                     /SigmaFactorBS="cgattttgcgcgactattgttcgctttttgTATTGttttttc
                     aaaatgaaCTTGGTACAATAGACACAGAaatcaaataagatgaattcgtataatcgcg
                     g"
                     /listShort="NA, pbuG"
                     /listLong="S228, yebC"
     misc_RNA        676393..676495
                     /gene="gswC"
                     /locus_tag="BSU_misc_RNA_9"
                     /product="guanine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:12787499, 15549109, 18072940, 19603494, 20022916,
                     20200045, 20204714, 21439477, 25023436, 27941758"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12787499, 15549109,
                     18072940, 19603494, 20022916, 20200045, 20204714,
                     21439477, 25023436, 27941758; Product type n: RNA"
     gene            676393..676495
                     /gene="gswC"
                     /locus_tag="BSU_misc_RNA_9"
     downshifts      676521
                     /Source="Nicolas_upshifts"
                     /id="D313"
                     /incds=0
                     /nref=11
                     /ntot=56
                     /MaxReadThrough="8.01916"
                     /MaxDrop="4.7859"
                     /score="24.3821572"
                     /energy="-11.3"
                     /TU="U493"
                     /idTUdmin="U492"
                     /TUdmin=286
                     /isTUend="FALSE"
     CDS             676630..677952
                     /gene="pbuG"
                     /locus_tag="BSU_06370"
                     /old_locus_tag="BSU06370"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:3110131, 11591660, 12923093, 15849754, 16850406,
                     19446032"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3110131, 11591660,
                     12923093, 15849754, 16850406, 19446032; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine/guanine permease"
                     /protein_id="NP_388518.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06370"
                     /db_xref="EnsemblGenomes-Tr:CAB12456"
                     /db_xref="GOA:O34987"
                     /db_xref="InterPro:IPR006043"
                     /db_xref="InterPro:IPR026033"
                     /db_xref="SubtiList:BG12811"
                     /db_xref="UniProtKB/Swiss-Prot:O34987"
                     /translation="MKTFFQFDELGTSYRNEIIGGLTTFLSMAYILFVNPITLALESV
                     KDFPEALRIDQGAVFTATALASAAGCILMGLIARYPIAIAPGMGLNAFFAFSVVLGMG
                     ISWQAALSGVFISGLIFVALSLTGFREKIINAIPPELKLAVGAGIGLFITFVGLQGSG
                     IITANPSTLVTIGNIHSGPVLLTIFGVIVTVILMVLRVNAGVFIGMLLTAVAGMIFGL
                     VPVPTQIIGSVPSLAPTFGQAWIHLPDIFSVQMLIVILTFLFVGFFDTAGTLVAVATQ
                     AGLMKENKLPRAGRALLADSSSIVIGAVLGTSTTTSYVESSSGVAAGARSGFAAIVTG
                     ILFLLATFFSPLLSVVTSNVTAPALIIVGALMVAPLGKIAWDKFEVAVPAFLTMIMMP
                     LTYSIATGIAIGFIFYPITMVCKGKAKEVHPIMYGLFVVFILYFIFLK*"
     gene            676630..677952
                     /gene="pbuG"
                     /locus_tag="BSU_06370"
                     /old_locus_tag="BSU06370"
     downshifts      677930
                     /Source="Nicolas_upshifts"
                     /id="D314"
                     /incds=0
                     /nref=47
                     /ntot=153
                     /MaxReadThrough="4.18958"
                     /MaxDrop="4.86237"
                     /score="42.0241443"
                     /energy="-13.4"
                     /TU="U493"
                     /idTUdmin="U493"
                     /TUdmin="-86"
                     /isTUend="FALSE"
     downshifts      677973
                     /Source="Nicolas_upshifts"
                     /id="D315"
                     /incds=0
                     /nref=1
                     /ntot=29
                     /MaxReadThrough="3.09696"
                     /MaxDrop="3.87785"
                     /score="42.0241443"
                     /energy="-13.4"
                     /TU="U493"
                     /idTUdmin="U493"
                     /TUdmin="-43"
                     /isTUend="FALSE"
     promotor_-35    678002..678011
                     /Source="Nicolas_upshift_promotors"
                     /id="U494"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1642
                     /SigmaFactorBS="aaccagctgcactggcagctggtttttttgttgcaaaagaTA
                     AAACCATTtcatacgatataCCGTCATGTAGATGTGccgccatgctttacttaaatgg
                     a"
                     /listShort="S228, yebC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       678022..678162
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_696054_696194"
                     /HighExp="T1.30H, T1.0H, T2.0H, T0.30H, B60, T2.30H,
                     T-0.40H, T0.0H, T3.0H, T-1.10H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.998"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S228"
     upshifts        678022
                     /Source="Nicolas_upshifts"
                     /id="U494"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1642
                     /SigmaFactorBS="aaccagctgcactggcagctggtttttttgttgcaaaagaTA
                     AAACCATTtcatacgatataCCGTCATGTAGATGTGccgccatgctttacttaaatgg
                     a"
                     /listShort="S228, yebC"
                     /GFF_Attribute="listLong"
     promotor_-10    678024..678039
                     /Source="Nicolas_upshift_promotors"
                     /id="U494"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1642
                     /SigmaFactorBS="aaccagctgcactggcagctggtttttttgttgcaaaagaTA
                     AAACCATTtcatacgatataCCGTCATGTAGATGTGccgccatgctttacttaaatgg
                     a"
                     /listShort="S228, yebC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             678163..678966
                     /gene="yebC"
                     /locus_tag="BSU_06380"
                     /old_locus_tag="BSU06380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22720735; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388519.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06380"
                     /db_xref="EnsemblGenomes-Tr:CAB12457"
                     /db_xref="GOA:O34341"
                     /db_xref="SubtiList:BG12812"
                     /db_xref="UniProtKB/Swiss-Prot:O34341"
                     /translation="MTEERKETFEEEINQSERIDADEEPLSRMSRKASRQSKQKQKQK
                     QKPRQERGESTVKDKLASVWAAINRYCGFAFSILKSPAKTVVTDGFSHYKYGLISMLI
                     FSIIFSIGNWFQLKASWNRPLGFGERHHAFYDGFLVVLVYLLIFFAVMVFAIWAVSRY
                     MMKQKVTFREAAAVLGSLLVPVIAVSILWLIFAIVNIPMLTVLFTVLILFSIFFIIAL
                     YVQRVYQAAQDAPIDYIYCVFAVVAIALLFTAVTWPFISEYITASLIPL*"
     gene            678163..678966
                     /gene="yebC"
                     /locus_tag="BSU_06380"
                     /old_locus_tag="BSU06380"
     downshifts      678951
                     /Source="Nicolas_upshifts"
                     /id="D316"
                     /incds=0
                     /nref=218
                     /ntot=263
                     /MaxReadThrough="1.47691"
                     /MaxDrop="7.03926"
                     /score="33.0377004"
                     /energy="-10.7"
                     /TU="NA"
                     /idTUdmin="U494"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    679034..679041
                     /Source="Nicolas_upshift_promotors"
                     /id="U495"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig=1
                     /xcortree=527
                     /SigmaFactorBS="tgtcacactttttacaaatatatctaaaaaacaTAGTTGATt
                     tgtaggattaacCCGTGTATGATGGGGAAAATgctgaaaacgtccagcgcaaaaacct
                     t"
                     /listShort="S229, yebD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    679055..679074
                     /Source="Nicolas_upshift_promotors"
                     /id="U495"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig=1
                     /xcortree=527
                     /SigmaFactorBS="tgtcacactttttacaaatatatctaaaaaacaTAGTTGATt
                     tgtaggattaacCCGTGTATGATGGGGAAAATgctgaaaacgtccagcgcaaaaacct
                     t"
                     /listShort="S229, yebD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       679061..679124
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_697093_697156"
                     /HighExp="B60, S2, S7, S8, Lbstat, nit, S4, BC, BT, M0t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S229"
     upshifts        679061
                     /Source="Nicolas_upshifts"
                     /id="U495"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig=1
                     /xcortree=527
                     /SigmaFactorBS="tgtcacactttttacaaatatatctaaaaaacaTAGTTGATt
                     tgtaggattaacCCGTGTATGATGGGGAAAATgctgaaaacgtccagcgcaaaaacct
                     t"
                     /listShort="S229, yebD"
                     /GFF_Attribute="listLong"
     CDS             679125..679292
                     /gene="yebD"
                     /locus_tag="BSU_06390"
                     /old_locus_tag="BSU06390"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388520.3"
                     /db_xref="EnsemblGenomes-Gn:BSU06390"
                     /db_xref="EnsemblGenomes-Tr:CAB12458"
                     /db_xref="InterPro:IPR025072"
                     /db_xref="SubtiList:BG12813"
                     /db_xref="UniProtKB/Swiss-Prot:O34904"
                     /translation="MADVLRRAINQKKQFLKTKLLLSEFYQGRGEQLADYTLSELEKE
                     YKSLQKMKKEI*"
     gene            679125..679292
                     /gene="yebD"
                     /locus_tag="BSU_06390"
                     /old_locus_tag="BSU06390"
     downshifts      679299
                     /Source="Nicolas_upshifts"
                     /id="D317"
                     /incds=0
                     /nref=64
                     /ntot=163
                     /MaxReadThrough="2.85884"
                     /MaxDrop="5.66286"
                     /score="29.2645456"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U495"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     promotor_-35    679343..679349
                     /Source="Nicolas_upshift_promotors"
                     /id="U496"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=744
                     /SigmaFactorBS="aggtgagtctgctgaaaagcgggcttttttgttttgATTTTG
                     AaaaggcgagaaagaGGGTAAACTACTACTGTTCaacacataaaagcgtgtcgaaata
                     t"
                     /listShort="S230, yebE, yebG, NA, S231"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    679364..679382
                     /Source="Nicolas_upshift_promotors"
                     /id="U496"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=744
                     /SigmaFactorBS="aggtgagtctgctgaaaagcgggcttttttgttttgATTTTG
                     AaaaggcgagaaagaGGGTAAACTACTACTGTTCaacacataaaagcgtgtcgaaata
                     t"
                     /listShort="S230, yebE, yebG, NA, S231"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       679367..679453
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_697399_697485"
                     /HighExp="Etha, Gly, M9-stat, Sw, B60, S4, S6, LPhT, S3,
                     S8"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.966"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S230"
     upshifts        679367
                     /Source="Nicolas_upshifts"
                     /id="U496"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=744
                     /SigmaFactorBS="aggtgagtctgctgaaaagcgggcttttttgttttgATTTTG
                     AaaaggcgagaaagaGGGTAAACTACTACTGTTCaacacataaaagcgtgtcgaaata
                     t"
                     /listShort="S230, yebE, yebG, NA, S231"
                     /GFF_Attribute="listLong"
     promotor_-35    679432..679439
                     /Source="Nicolas_upshift_promotors"
                     /id="U497"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.876123876123876"
                     /psig="0.999000999001"
                     /xcortree=2463
                     /SigmaFactorBS="cgtgtcgaaatattttgcttaagcttacgggcgaagcTGATT
                     GTAaacggctcatttcTCTAGTAGAATATGAATGCTttgtgcaagctgaagagtaggg
                     g"
                     /listShort="yebE, yebG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    679453..679472
                     /Source="Nicolas_upshift_promotors"
                     /id="U497"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.876123876123876"
                     /psig="0.999000999001"
                     /xcortree=2463
                     /SigmaFactorBS="cgtgtcgaaatattttgcttaagcttacgggcgaagcTGATT
                     GTAaacggctcatttcTCTAGTAGAATATGAATGCTttgtgcaagctgaagagtaggg
                     g"
                     /listShort="yebE, yebG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        679455
                     /Source="Nicolas_upshifts"
                     /id="U497"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.876123876123876"
                     /psig="0.999000999001"
                     /xcortree=2463
                     /SigmaFactorBS="cgtgtcgaaatattttgcttaagcttacgggcgaagcTGATT
                     GTAaacggctcatttcTCTAGTAGAATATGAATGCTttgtgcaagctgaagagtaggg
                     g"
                     /listShort="yebE, yebG"
                     /GFF_Attribute="listLong"
     CDS             679506..680060
                     /gene="yebE"
                     /locus_tag="BSU_06400"
                     /old_locus_tag="BSU06400"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388521.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06400"
                     /db_xref="EnsemblGenomes-Tr:CAB12459"
                     /db_xref="GOA:O34624"
                     /db_xref="InterPro:IPR019264"
                     /db_xref="InterPro:IPR022930"
                     /db_xref="SubtiList:BG12814"
                     /db_xref="UniProtKB/Swiss-Prot:O34624"
                     /translation="MMQTILSNGIAMVLIILIINIVYVSFFTIRMILTLKGQRYLAAG
                     ISTIEILVYVTGLSLVLDNLDQIQNVIAYALGYGLGVIVGMKIEEKLALGYIMVNVIT
                     KELDLDLPKQLREKGYGVTNWVAGGLEGDRTALQILTPRRYELQLYDTIKTLDSKAFI
                     IAYEPKTIHGGFWVKAVKKRRIKE*"
     gene            679506..680060
                     /gene="yebE"
                     /locus_tag="BSU_06400"
                     /old_locus_tag="BSU06400"
     CDS             680060..680257
                     /gene="yebG"
                     /locus_tag="BSU_06410"
                     /old_locus_tag="BSU06410"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388523.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06410"
                     /db_xref="EnsemblGenomes-Tr:CAB12461"
                     /db_xref="InterPro:IPR025930"
                     /db_xref="SubtiList:BG12816"
                     /db_xref="UniProtKB/Swiss-Prot:O34700"
                     /translation="MAKPKKKKFEVTEQQTIDAVLQQMKEEGYLPVRRMEEPIFMEKK
                     ENGSIQIVPCGKKIVFEGKLI*"
     gene            680060..680257
                     /gene="yebG"
                     /locus_tag="BSU_06410"
                     /old_locus_tag="BSU06410"
     downshifts      680247
                     /Source="Nicolas_upshifts"
                     /id="D318"
                     /incds=0
                     /nref=2
                     /ntot=91
                     /MaxReadThrough="2.80904"
                     /MaxDrop="2.65424"
                     /score="17.462689"
                     /energy="-17.6"
                     /TU="U496"
                     /idTUdmin="U497"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    680303..680310
                     /Source="Nicolas_upshift_promotors"
                     /id="U498"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=2428
                     /SigmaFactorBS="attagtagaatgaatttttgtatcgttcgataatatCGTTGA
                     CAttatccatgtccgtTGTTAAGATAAACATGAAATcaaaacacgacctcatataatc
                     t"
                     /listShort="NA, S231, purE, purK, purB, purC, purS, purQ,
                     purL, purF, S232, purM, purN, purH, purD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    680325..680344
                     /Source="Nicolas_upshift_promotors"
                     /id="U498"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=2428
                     /SigmaFactorBS="attagtagaatgaatttttgtatcgttcgataatatCGTTGA
                     CAttatccatgtccgtTGTTAAGATAAACATGAAATcaaaacacgacctcatataatc
                     t"
                     /listShort="NA, S231, purE, purK, purB, purC, purS, purQ,
                     purL, purF, S232, purM, purN, purH, purD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        680327
                     /Source="Nicolas_upshifts"
                     /id="U498"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=2428
                     /SigmaFactorBS="attagtagaatgaatttttgtatcgttcgataatatCGTTGA
                     CAttatccatgtccgtTGTTAAGATAAACATGAAATcaaaacacgacctcatataatc
                     t"
                     /listShort="NA, S231, purE, purK, purB, purC, purS, purQ,
                     purL, purF, S232, purM, purN, purH, purD"
                     /GFF_Attribute="listLong"
     misc_RNA        680337..680439
                     /gene="gswD"
                     /locus_tag="BSU_misc_RNA_10"
                     /product="guanine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:12787499, 15549109, 18072940, 19603494, 20022916,
                     20200045, 20204714, 21439477, 25023436, 27941758"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12787499, 15549109,
                     18072940, 19603494, 20022916, 20200045, 20204714,
                     21439477, 25023436, 27941758; Product type n: RNA"
     gene            680337..680439
                     /gene="gswD"
                     /locus_tag="BSU_misc_RNA_10"
     S_feature       680440..680579
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_698472_698611"
                     /HighExp="MG 10, MG 15, MG t5, BMM, MG 25, MG 5, HPh, GM
                     45, GM 90, M9-exp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="1, 0.966"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S231"
     CDS             680580..681068
                     /gene="purE"
                     /locus_tag="BSU_06420"
                     /old_locus_tag="BSU06420"
                     /EC_number="5.4.99.18"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 12787499, 16138311,
                     9683488; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N5-carboxyaminoimidazole ribonucleotide mutase"
                     /protein_id="NP_388524.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06420"
                     /db_xref="EnsemblGenomes-Tr:CAB12462"
                     /db_xref="GOA:P12044"
                     /db_xref="InterPro:IPR000031"
                     /db_xref="InterPro:IPR024694"
                     /db_xref="InterPro:IPR033747"
                     /db_xref="InterPro:IPR035893"
                     /db_xref="SubtiList:BG10700"
                     /db_xref="UniProtKB/Swiss-Prot:P12044"
                     /translation="MQPLVGIIMGSTSDWETMKHACDILDELNVPYEKKVVSAHRTPD
                     FMFEYAETARERGIKVIIAGAGGAAHLPGMTAAKTTLPVIGVPVQSKALNGMDSLLSI
                     VQMPGGVPVATTSIGKAGAVNAGLLAAQILSAFDEDLARKLDERRENTKQTVLESSDQ
                     LV*"
     gene            680580..681068
                     /gene="purE"
                     /locus_tag="BSU_06420"
                     /old_locus_tag="BSU06420"
     CDS             681061..682203
                     /gene="purK"
                     /locus_tag="BSU_06430"
                     /old_locus_tag="BSU06430"
                     /EC_number="6.3.4.18"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 8998996, 9683488,
                     21931218, 25372694; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N5-carboxyaminoimidazole ribonucleotide
                     synthase"
                     /protein_id="NP_388525.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06430"
                     /db_xref="EnsemblGenomes-Tr:CAB12463"
                     /db_xref="GOA:P12045"
                     /db_xref="InterPro:IPR003135"
                     /db_xref="InterPro:IPR005875"
                     /db_xref="InterPro:IPR006115"
                     /db_xref="InterPro:IPR011054"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="SubtiList:BG10701"
                     /db_xref="UniProtKB/Swiss-Prot:P12045"
                     /translation="MSKQIIYPGAVIGIIGGGQLGKMMAVSAKQMGYKVAVVDPVKDS
                     PCGQVADVEITAHYNDREAIRKLAEISDIITYEFENIDYDALHWLKDHAYLPQGSELL
                     LITQNRETEKKAIQSAGCEVAPYSIVKTKNELKQAVQELRLPAVLKTCRGGYDGKGQF
                     VIKEEAQMEQAAALLEHGTCILESWVSFKMELSVIVVRSVNGEISTFPTAENIHHNNI
                     LFQSIVPARVEKGIQQKAADLAVKLADELNLVGPLAVEMFLTEDGELLVNELAPRPHN
                     SGHYTLDLCETSQFEQHIRAVCGLPLGKTDLLKPGMMVNLLGDEVKLVEEDPELLKEA
                     KLYIYGKHEIKKGRKMGHITFMKQPEDEWIQEITNKWMNRDGGQAE*"
     gene            681061..682203
                     /gene="purK"
                     /locus_tag="BSU_06430"
                     /old_locus_tag="BSU06430"
     CDS             682200..683495
                     /gene="purB"
                     /locus_tag="BSU_06440"
                     /old_locus_tag="BSU06440"
                     /EC_number="4.3.2.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9622500, 9683488, 9890879,
                     11063569, 12787499; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="NP_388526.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06440"
                     /db_xref="EnsemblGenomes-Tr:CAB12464"
                     /db_xref="GOA:P12047"
                     /db_xref="InterPro:IPR000362"
                     /db_xref="InterPro:IPR004769"
                     /db_xref="InterPro:IPR008948"
                     /db_xref="InterPro:IPR019468"
                     /db_xref="InterPro:IPR020557"
                     /db_xref="InterPro:IPR022761"
                     /db_xref="InterPro:IPR024083"
                     /db_xref="PDB:1F1O"
                     /db_xref="SubtiList:BG10702"
                     /db_xref="UniProtKB/Swiss-Prot:P12047"
                     /translation="MIERYSRPEMSAIWTDENRFQAWLEVEILACEAWAELGVIPKED
                     VKVMRENASFDINRILEIEKDTRHDVVAFTRAVSESLGEERKWVHYGLTSTDVVDTAL
                     SYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEE
                     MKRNLERFKQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDR
                     HADYMATLALIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSEN
                     MTGMARVIRGYMMTAYENVPLWHERDISHSSAERIILPDATIALNYMLNRFSNIVKNL
                     TVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFREL
                     VEAEEKITSRLSPEKIADCFDYNYHLKNVDLIFERLGLA*"
     gene            682200..683495
                     /gene="purB"
                     /locus_tag="BSU_06440"
                     /old_locus_tag="BSU06440"
     promotor_-10    complement(682505..682524)
                     /Source="Nicolas_upshift_promotors"
                     /id="U499"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.993006993006993"
                     /xcortree=1708
                     /SigmaFactorBS="tttcgctttttcttttataatgtcaacaaatctctcaagaTC
                     CTTGAGcaaaatatcgtttgCCTGTTTTAATAAGTAGGAAagagccgtatcaacaacg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(682526)
                     /Source="Nicolas_upshifts"
                     /id="U499"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.993006993006993"
                     /xcortree=1708
                     /SigmaFactorBS="tttcgctttttcttttataatgtcaacaaatctctcaagaTC
                     CTTGAGcaaaatatcgtttgCCTGTTTTAATAAGTAGGAAagagccgtatcaacaacg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(682539..682546)
                     /Source="Nicolas_upshift_promotors"
                     /id="U499"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.791208791208791"
                     /psig="0.993006993006993"
                     /xcortree=1708
                     /SigmaFactorBS="tttcgctttttcttttataatgtcaacaaatctctcaagaTC
                     CTTGAGcaaaatatcgtttgCCTGTTTTAATAAGTAGGAAagagccgtatcaacaacg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             683569..684294
                     /gene="purC"
                     /locus_tag="BSU_06450"
                     /old_locus_tag="BSU06450"
                     /EC_number="6.3.2.6"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 2495272, 9683488,
                     10784038, 12787499, 26118696; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazole succinocarboxamide
                     synthetase"
                     /protein_id="NP_388527.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06450"
                     /db_xref="EnsemblGenomes-Tr:CAB12465"
                     /db_xref="GOA:P12046"
                     /db_xref="InterPro:IPR001636"
                     /db_xref="InterPro:IPR018236"
                     /db_xref="InterPro:IPR028923"
                     /db_xref="InterPro:IPR033934"
                     /db_xref="SubtiList:BG10703"
                     /db_xref="UniProtKB/Swiss-Prot:P12046"
                     /translation="MNIVKNELLYEGKAKKIYKTDDENTLYVVYKDSATAFNGEKKAE
                     ISGKGRLNNEISSLIFKHLHAKGINNHFIERISETEQLIKKVTIVPLEVVVRNVVAGS
                     MSKRLGIPEGTELEQPIIEFYYKDDALGDPLITEDHIWLLKAATPEQVETIKSITTIV
                     NEELQSIFDDCHVRLIDFKLEFGLDAEGQVLLADEISPDTCRLWDKETNEKLDKDLFR
                     RNLGSLTDAYEEIFNRLGGIHHV*"
     gene            683569..684294
                     /gene="purC"
                     /locus_tag="BSU_06450"
                     /old_locus_tag="BSU06450"
     CDS             684287..684541
                     /gene="purS"
                     /locus_tag="BSU_06460"
                     /old_locus_tag="BSU06460"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10784038, 12787499"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10784038, 12787499;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="factor required for
                     phosphoribosylformylglycinamidine synthetase activity"
                     /protein_id="NP_388528.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06460"
                     /db_xref="EnsemblGenomes-Tr:CAB12466"
                     /db_xref="GOA:P12049"
                     /db_xref="InterPro:IPR003850"
                     /db_xref="InterPro:IPR036604"
                     /db_xref="PDB:1T4A"
                     /db_xref="PDB:1TWJ"
                     /db_xref="SubtiList:BG10704"
                     /db_xref="UniProtKB/Swiss-Prot:P12049"
                     /translation="MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYME
                     LTIEKSDRDLDVLVKEMCEKLLANTVIEDYRYEVEEVVAQ*"
     gene            684287..684541
                     /gene="purS"
                     /locus_tag="BSU_06460"
                     /old_locus_tag="BSU06460"
     CDS             684538..685221
                     /gene="purQ"
                     /locus_tag="BSU_06470"
                     /old_locus_tag="BSU06470"
                     /EC_number="6.3.5.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12787499, 15301530, 15301532, 10784038, 9683488"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12787499, 15301530,
                     15301532, 10784038, 9683488; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthetase
                     subunit I"
                     /protein_id="NP_388529.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06470"
                     /db_xref="EnsemblGenomes-Tr:CAB12467"
                     /db_xref="GOA:P12041"
                     /db_xref="InterPro:IPR010075"
                     /db_xref="InterPro:IPR017926"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG10706"
                     /db_xref="UniProtKB/Swiss-Prot:P12041"
                     /translation="MKFAVIVLPGSNCDIDMYHAVKDELGHEVEYVWHEETSLDGFDG
                     VLIPGGFSYGDYLRCGAIARFANIMPAVKQAAAEGKPVLGVCNGFQILQELGLLPGAM
                     RRNKDLKFICRPVELIVQNDETLFTASYEKGESITIPVAHGEGNFYCDDETLATLKEN
                     NQIAFTYGSNINGSVSDIAGVVNEKGNVLGMMPHPERAVDELLGSADGLKLFQSIVKN
                     WRETHVTTA*"
     gene            684538..685221
                     /gene="purQ"
                     /locus_tag="BSU_06470"
                     /old_locus_tag="BSU06470"
     CDS             685205..687433
                     /gene="purL"
                     /locus_tag="BSU_06480"
                     /old_locus_tag="BSU06480"
                     /EC_number="6.3.5.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12787499, 15301532, 10784038, 9683488, 21671997"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12787499, 15301532,
                     10784038, 9683488, 21671997; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthetase
                     subunit II"
                     /protein_id="NP_388530.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06480"
                     /db_xref="EnsemblGenomes-Tr:CAB12468"
                     /db_xref="GOA:P12042"
                     /db_xref="InterPro:IPR010074"
                     /db_xref="InterPro:IPR010918"
                     /db_xref="InterPro:IPR016188"
                     /db_xref="InterPro:IPR036676"
                     /db_xref="InterPro:IPR036921"
                     /db_xref="SubtiList:BG10705"
                     /db_xref="UniProtKB/Swiss-Prot:P12042"
                     /translation="MSLLLEPSKEQIKEEKLYQQMGVSDDEFALIESILGRLPNYTEI
                     GIFSVMWSEHCSYKNSKPILRKFPTSGERVLQGPGEGAGIVDIGDNQAVVFKIESHNH
                     PSALEPYQGAATGVGGIIRDVFSMGARPIAVLNSLRFGELTSPRVKYLFEEVVAGIAG
                     YGNCIGIPTVGGEVQFDSSYEGNPLVNAMCVGLINHEDIKKGQAKGVGNTVMYVGAKT
                     GRDGIHGATFASEEMSDSSEEKRSAVQVGDPFMEKLLLEACLEVIQCDALVGIQDMGA
                     AGLTSSSAEMASKAGSGIEMNLDLIPQRETGMTAYEMMLSESQERMLLVIERGREQEI
                     IDIFDKYDLEAVSVGHVTDDKMLRLTHKGEVVCELPVDALAEEAPVYHKPSQEPAYYR
                     EFLETDVPAPQIEDANEMLKALLQQPTIASKEWVYDQYDYMVRTNTVVAPGSDAGVLR
                     IRGTKKALAMTTDCNARYLYLDPEVGGKIAVAEAARNIICSGAEPLAVTDNLNFGNPE
                     KPEIFWQIEKAADGISEACNVLSTPVIGGNVSLYNESNGTAIYPTPVIGMVGLIEDTA
                     HITTQHFKQAGDLVYVIGETKPEFAGSELQKMTEGRIYGKAPQIDLDVELSRQKALLD
                     AIKKGFVQSAHDVSEGGLGVAIAESVMTTENLGANVTVEGEAALLFSESQSRFVVSVK
                     KEHQAAFEATVKDAVHIGEVTADGILAIQNQDGQQMIHAQTKELERVWKGAIPCLLKS
                     KA*"
     gene            685205..687433
                     /gene="purL"
                     /locus_tag="BSU_06480"
                     /old_locus_tag="BSU06480"
     downshifts      complement(685453)
                     /Source="Nicolas_upshifts"
                     /id="D319"
                     /incds=1
                     /nref=1
                     /ntot=47
                     /MaxReadThrough="0.69202"
                     /MaxDrop="3.99287"
                     /score="-6.56256716"
                     /energy="-16.7"
                     /TU="NA"
                     /idTUdmin="U499"
                     /TUdmin="-3147"
                     /isTUend="FALSE"
     CDS             687409..688839
                     /gene="purF"
                     /locus_tag="BSU_06490"
                     /old_locus_tag="BSU06490"
                     /EC_number="2.4.2.14"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9683488, 10049369, 12787499, 16321950, 17981983"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9683488, 10049369,
                     12787499, 16321950, 17981983; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine phosphoribosylpyrophosphate
                     amidotransferase"
                     /protein_id="NP_388531.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06490"
                     /db_xref="EnsemblGenomes-Tr:CAB12469"
                     /db_xref="GOA:P00497"
                     /db_xref="InterPro:IPR000836"
                     /db_xref="InterPro:IPR005854"
                     /db_xref="InterPro:IPR017932"
                     /db_xref="InterPro:IPR029055"
                     /db_xref="InterPro:IPR029057"
                     /db_xref="InterPro:IPR035584"
                     /db_xref="PDB:1AO0"
                     /db_xref="PDB:1GPH"
                     /db_xref="SubtiList:BG10707"
                     /db_xref="UniProtKB/Swiss-Prot:P00497"
                     /translation="MLAEIKGLNEECGVFGIWGHEEAPQITYYGLHSLQHRGQEGAGI
                     VATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRS
                     QNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKN
                     SLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGMMGDAYVVASETCAFDVVGATYLR
                     EVEPGEMLIINDEGMKSERFSMNINRSICSMEYIYFSRPDSNIDGINVHSARKNLGKM
                     LAQESAVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQ
                     GVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHP
                     CFYGIDTSTHEELIASSHSVEEIRQEIGADTLSFLSVEGLLKGIGRKYDDSNCGQCLA
                     CFTGKYPTEIYQDTVLPHVKEAVLTK*"
     gene            687409..688839
                     /gene="purF"
                     /locus_tag="BSU_06490"
                     /old_locus_tag="BSU06490"
     S_feature       688840..688940
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_706872_706972"
                     /HighExp="MG 15, MG 25, MG 10, MG 5, aero, S0, MG t5, Gly,
                     LPh, GM 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S232"
     CDS             688941..689981
                     /gene="purM"
                     /locus_tag="BSU_06500"
                     /old_locus_tag="BSU06500"
                     /EC_number="6.3.3.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9683488, 10508786, 12787499,
                     16321950; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazole synthetase"
                     /protein_id="NP_388532.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06500"
                     /db_xref="EnsemblGenomes-Tr:CAB12470"
                     /db_xref="GOA:P12043"
                     /db_xref="InterPro:IPR004733"
                     /db_xref="InterPro:IPR010918"
                     /db_xref="InterPro:IPR016188"
                     /db_xref="InterPro:IPR036676"
                     /db_xref="InterPro:IPR036921"
                     /db_xref="SubtiList:BG10708"
                     /db_xref="UniProtKB/Swiss-Prot:P12043"
                     /translation="MSEAYKNAGVDIEAGYEAVKRMKKHVERTKRLGVMGSLGGFGGM
                     FDLSELSYQKPVLISGTDGVGTKLKLAFSMDKHDTIGVDAVAMCVNDVLAQGAEPLFF
                     LDYLAVGKADPVKIEQIVQGVAEGCEQSGSALVGGETAEMPGLYTADEYDIAGFSVGV
                     AEKDEIVTGEKIEEGHLLIGLSSSGLHSNGFSLVRKVLLDDAELDLDTTYEPFERPLG
                     EELLEPTRIYVKPVLAAVKSGKIDGMAHVTGGGFIENIPRMLPEGLSAEIDHGSWPIP
                     PIFSFLQEYGKLKEEDMFNVFNMGIGFVLAVKEEHLTDVIGTLESHGEKAYLIGRVKK
                     GEGVTFGGAALS*"
     gene            688941..689981
                     /gene="purM"
                     /locus_tag="BSU_06500"
                     /old_locus_tag="BSU06500"
     CDS             689978..690565
                     /gene="purN"
                     /locus_tag="BSU_06510"
                     /old_locus_tag="BSU06510"
                     /EC_number="2.1.2.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9683488, 10569930, 12787499,
                     19574646; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="NP_388533.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06510"
                     /db_xref="EnsemblGenomes-Tr:CAB12471"
                     /db_xref="GOA:P12040"
                     /db_xref="InterPro:IPR001555"
                     /db_xref="InterPro:IPR002376"
                     /db_xref="InterPro:IPR004607"
                     /db_xref="InterPro:IPR036477"
                     /db_xref="SubtiList:BG10709"
                     /db_xref="UniProtKB/Swiss-Prot:P12040"
                     /translation="MKKFAVFASGNGSNFEAIVTRLKEENWDASAALLVCDKPQAKVI
                     ERAEAFHIPSFAFEPKSYENKAAFEQAIIEQLRLHEVELIALAGYMRLIGDTLLQAYG
                     GKIINIHPSLLPAFPGIDAVGQAFRAGVKVAGITVHYVDEGMDTGPIIAQKAIEIDEH
                     DTLETIEQRIHKLEHKWYPSVIKQLLGLNNRGEKA*"
     gene            689978..690565
                     /gene="purN"
                     /locus_tag="BSU_06510"
                     /old_locus_tag="BSU06510"
     misc_feature    689988..690002
                     /Source="Nicolas_upshift_promotors"
                     /id="U500"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.52947052947053"
                     /psig="0.52947052947053"
                     /xcortree=2706
                     /SigmaFactorBS="aaaaaaggtgaaggcgtcacattcggcggtgcggcactttca
                     tgaaaaagtTTGCGGTATTTGCATcaggaaacggttcaaacttcgaagccatcgtcac
                     g"
                     /listShort="purN, purH, purD"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        689997
                     /Source="Nicolas_upshifts"
                     /id="U500"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.52947052947053"
                     /psig="0.52947052947053"
                     /xcortree=2706
                     /SigmaFactorBS="aaaaaaggtgaaggcgtcacattcggcggtgcggcactttca
                     tgaaaaagtTTGCGGTATTTGCATcaggaaacggttcaaacttcgaagccatcgtcac
                     g"
                     /listShort="purN, purH, purD"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(690264..690282)
                     /Source="Nicolas_upshift_promotors"
                     /id="U501"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1204
                     /SigmaFactorBS="tccaggaaacgccggaagaagcgatgggTGAATGttaatgat
                     ttttcccCCATATGCTTGAAGGAGCGtatcaccgatcagcctcatatagccggcaaga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(690271)
                     /Source="Nicolas_upshifts"
                     /id="U501"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1204
                     /SigmaFactorBS="tccaggaaacgccggaagaagcgatgggTGAATGttaatgat
                     ttttcccCCATATGCTTGAAGGAGCGtatcaccgatcagcctcatatagccggcaaga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(690298..690303)
                     /Source="Nicolas_upshift_promotors"
                     /id="U501"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1204
                     /SigmaFactorBS="tccaggaaacgccggaagaagcgatgggTGAATGttaatgat
                     ttttcccCCATATGCTTGAAGGAGCGtatcaccgatcagcctcatatagccggcaaga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             690562..692100
                     /gene="purH"
                     /locus_tag="BSU_06520"
                     /old_locus_tag="BSU06520"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12787499, 1937050, 9683488;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="fused phosphoribosylaminoimidazole carboxy
                     formyl formyltransferase; inosine-monophosphate
                     cyclohydrolase"
                     /protein_id="NP_388534.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06520"
                     /db_xref="EnsemblGenomes-Tr:CAB12472"
                     /db_xref="GOA:P12048"
                     /db_xref="InterPro:IPR002695"
                     /db_xref="InterPro:IPR011607"
                     /db_xref="InterPro:IPR016193"
                     /db_xref="InterPro:IPR024051"
                     /db_xref="InterPro:IPR036914"
                     /db_xref="SubtiList:BG10710"
                     /db_xref="UniProtKB/Swiss-Prot:P12048"
                     /translation="MTIKRALISVSDKTNLVPFVKELTELGVEVISTGGTKKLLQENG
                     VDVIGISEVTGFPEIMDGRLKTLHPNIHGGLLAVRGNEEHMAQINEHGIQPIDLVVVN
                     LYPFKETISKEDVTYEEAIENIDIGGPGMLRAASKNHQDVTVIVDPADYSPVLNQIKE
                     EGSVSLQKKRELAAKVFRHTAAYDALIADYLTNVVGEKEPEQFTVTFEKKQSLRYGEN
                     PHQEATFYQTALPVKGSIAQAEQLHGKELSYNNIKDADAAVQIVREFTEPAAVAVKHM
                     NPCGVGTGKTIAEAFDRAFEADKTSIFGGIIALNREVDKATAEALHNIFLEIIIAPSF
                     SQEALDVLTAKKNLRLLTLDVSAAVQKEKQLTSVQGGLLIQDLDMHGFDDAEISIPTK
                     REPNEQEWEDLKLAWKVVKHVKSNAIVLAKDNMTVGVGAGQMNRVGSAKIAIEQAGEK
                     AKGSALGSDAYFPMPDTVEEAAKAGVTAIIQPGGSIRDEDSIKKADEYGIAMVFTGIR
                     HFKH*"
     gene            690562..692100
                     /gene="purH"
                     /locus_tag="BSU_06520"
                     /old_locus_tag="BSU06520"
     CDS             692116..693384
                     /gene="purD"
                     /locus_tag="BSU_06530"
                     /old_locus_tag="BSU06530"
                     /EC_number="6.3.4.13"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9683488, 12787499, 16321950"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9683488, 12787499,
                     16321950; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase"
                     /protein_id="NP_388535.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06530"
                     /db_xref="EnsemblGenomes-Tr:CAB12473"
                     /db_xref="GOA:P12039"
                     /db_xref="InterPro:IPR000115"
                     /db_xref="InterPro:IPR011054"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="InterPro:IPR020559"
                     /db_xref="InterPro:IPR020560"
                     /db_xref="InterPro:IPR020561"
                     /db_xref="InterPro:IPR020562"
                     /db_xref="InterPro:IPR037123"
                     /db_xref="PDB:2XCL"
                     /db_xref="PDB:2XD4"
                     /db_xref="SubtiList:BG10711"
                     /db_xref="UniProtKB/Swiss-Prot:P12039"
                     /translation="MNVLIIGKGGREHTLAWKAAQSSLVENVFAAPGNDGMAASAQLV
                     NIEESDHAGLVSFAKQNQVGLTIVGPEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGS
                     KQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEE
                     EAIACLHDFLEDEKFGDASASVVIEEYLSGEEFSLMAFVKGEKVYPMVIAQDHKRAFD
                     GDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE
                     NGSKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDKEVDLRWKDTAAVSVVLASE
                     GYPESYAKGTPIGSLAAETEQVVVFHAGTKAEGGEFVTNGGRVANVTAFDETFEAARD
                     RVYKAVDEIFKPGLFFRKDIGARALKAAQK*"
     gene            692116..693384
                     /gene="purD"
                     /locus_tag="BSU_06530"
                     /old_locus_tag="BSU06530"
     downshifts      693369
                     /Source="Nicolas_upshifts"
                     /id="D320"
                     /incds=0
                     /nref=140
                     /ntot=249
                     /MaxReadThrough="2.77191"
                     /MaxDrop="5.90939"
                     /score="30.0999687"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U500"
                     /TUdmin=6
                     /isTUend="TRUE"
     CDS             complement(693424..693843)
                     /gene="yezC"
                     /locus_tag="BSU_06540"
                     /old_locus_tag="BSU06540"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (Lrp/AsnC
                     family)"
                     /protein_id="NP_388536.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06540"
                     /db_xref="EnsemblGenomes-Tr:CAB12474"
                     /db_xref="GOA:O31497"
                     /db_xref="InterPro:IPR000485"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR019885"
                     /db_xref="InterPro:IPR019887"
                     /db_xref="InterPro:IPR019888"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12874"
                     /db_xref="UniProtKB/Swiss-Prot:O31497"
                     /translation="MDDTDLQILSHLQRNGRLTMVELGKLVGLSSPSAAERVRKLEDK
                     GVITGYSANICYEKLNKHVTAFILMEPKSCKHYAAFATSHPDVAENHRITGMYSYVTK
                     VVTESVHTLEDFIDTSMAHGKPTTLVVLSSSSCHPAF*"
     gene            complement(693424..693843)
                     /gene="yezC"
                     /locus_tag="BSU_06540"
                     /old_locus_tag="BSU06540"
     misc_feature    complement(693913..693932)
                     /Source="Nicolas_upshift_promotors"
                     /id="U502"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig="0.999000999001"
                     /xcortree=3125
                     /SigmaFactorBS="ccccctctctgattgatggctttattatagaaaaaataagac
                     ggcatccaTATGCTACAATGAAGTTAAAtcaacagcattaccttacgatcaaaggaat
                     t"
                     /listShort="yezC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(693922)
                     /Source="Nicolas_upshifts"
                     /id="U502"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig="0.999000999001"
                     /xcortree=3125
                     /SigmaFactorBS="ccccctctctgattgatggctttattatagaaaaaataagac
                     ggcatccaTATGCTACAATGAAGTTAAAtcaacagcattaccttacgatcaaaggaat
                     t"
                     /listShort="yezC"
                     /GFF_Attribute="listLong"
     CDS             693987..695261
                     /gene="yecA"
                     /locus_tag="BSU_06550"
                     /old_locus_tag="BSU06550"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     26319875, 27723097, 24678831; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amino acid exporter"
                     /protein_id="NP_388537.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06550"
                     /db_xref="EnsemblGenomes-Tr:CAB12475"
                     /db_xref="GOA:O34560"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG12817"
                     /db_xref="UniProtKB/Swiss-Prot:O34560"
                     /translation="MLPELQRSITWIQGTALTIGAVLGCGILILPSVTADTAGPASLF
                     VWVFMSFLSFFLVGTLARLVKIAPSAGGITAYVQLAFQKKAGAILGWIMLGSVPIGVP
                     IIALTGAHYVSYITEAADWQITLIAGCMLAISILLHMRGIQLSANISTLVICVIVFLL
                     VTSIAVSLPHVTIAEFKPFLPHGWSAAGSVSVMIFFSFVGWEMITPLAEEFHRPEKDV
                     PLSLFLAASCVAGLYIMLSFVTVGTHSYGENGEIASLAMLISKGAGESGVYVTVCLAL
                     FITFATIHANIAGFSRMVYALAREGHIPVFFGKLSATKRTPIRVLTAMAAVFGLVLAA
                     HGLFQIDLTTLLKGPSAAFIASYICTMAAALKLLGRRDIGWWMALGAFVACAVIYSFS
                     GWALLYPAVLAAAGYFYMKTKGGHKKKLDHVL*"
     gene            693987..695261
                     /gene="yecA"
                     /locus_tag="BSU_06550"
                     /old_locus_tag="BSU06550"
     downshifts      695210
                     /Source="Nicolas_upshifts"
                     /id="D321"
                     /incds=0
                     /nref=4
                     /ntot=64
                     /MaxReadThrough="0.796809999999999"
                     /MaxDrop="2.92696"
                     /score="1.68718502"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U498"
                     /TUdmin=1825
                     /isTUend="FALSE"
     CDS             complement(695276..695503)
                     /gene="yezF"
                     /locus_tag="BSU_06559"
                     /old_locus_tag="BSU06559"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097691.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06559"
                     /db_xref="EnsemblGenomes-Tr:CAX52578"
                     /db_xref="GOA:C0H3X3"
                     /db_xref="InterPro:IPR021309"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X3"
                     /translation="MKPNISLINAVFRIACGLTIMSAASAKFTKKPWCRMHLFYIFMG
                     AMKAGSGILRFCPVTYMFQHSDSGNNEHQNG*"
     gene            complement(695276..695503)
                     /gene="yezF"
                     /locus_tag="BSU_06559"
                     /old_locus_tag="BSU06559"
     downshifts      complement(695287)
                     /Source="Nicolas_upshifts"
                     /id="D322"
                     /incds=0
                     /nref=29
                     /ntot=46
                     /MaxReadThrough="0.14199"
                     /MaxDrop="6.82335"
                     /score="34.1397958"
                     /energy="-13.9"
                     /TU="NA"
                     /idTUdmin="U504"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(695504..695924)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_713536_713956_c"
                     /HighExp="S8, S7, S5, S6, S4, ferm, nit, BT, Pyr, T5.0H"
                     /AntisenseName="yerA"
                     /AntisenseCor="0.38264258041500998"
                     /AntisenseRegPval="-10.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S233"
     promotor_-35    695571..695576
                     /Source="Nicolas_upshift_promotors"
                     /id="U503"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.59040959040959"
                     /psig=1
                     /xcortree=1592
                     /SigmaFactorBS="aaaagttttttaatcgaaccttcaaaaatttgtaacgttttt
                     atCGTGCGtgatgaggaaggaTGTGATACCATGAGTCTAATacatgtaaaggagagta
                     t"
                     /listShort="yerA, yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        695587
                     /Source="Nicolas_upshifts"
                     /id="U503"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.59040959040959"
                     /psig=1
                     /xcortree=1592
                     /SigmaFactorBS="aaaagttttttaatcgaaccttcaaaaatttgtaacgttttt
                     atCGTGCGtgatgaggaaggaTGTGATACCATGAGTCTAATacatgtaaaggagagta
                     t"
                     /listShort="yerA, yerB, yerC"
                     /GFF_Attribute="listLong"
     promotor_-10    695590..695609
                     /Source="Nicolas_upshift_promotors"
                     /id="U503"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.59040959040959"
                     /psig=1
                     /xcortree=1592
                     /SigmaFactorBS="aaaagttttttaatcgaaccttcaaaaatttgtaacgttttt
                     atCGTGCGtgatgaggaaggaTGTGATACCATGAGTCTAATacatgtaaaggagagta
                     t"
                     /listShort="yerA, yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             695632..697374
                     /gene="yerA"
                     /locus_tag="BSU_06560"
                     /old_locus_tag="BSU06560"
                     /EC_number="3.5.4.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23109554; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenine deaminase YerA"
                     /protein_id="NP_388538.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06560"
                     /db_xref="EnsemblGenomes-Tr:CAB12476"
                     /db_xref="GOA:O34909"
                     /db_xref="InterPro:IPR006679"
                     /db_xref="InterPro:IPR006680"
                     /db_xref="InterPro:IPR011059"
                     /db_xref="InterPro:IPR026912"
                     /db_xref="InterPro:IPR032466"
                     /db_xref="SubtiList:BG12829"
                     /db_xref="UniProtKB/Swiss-Prot:O34909"
                     /translation="MSERTFNWKNKDIRAQVDVVDSKLLPTLLLRNALVLNPYVKQWL
                     KKNIWIYQDRIVYVGHELPNRAEEIHTIDCEGKYIVPGYIEPHAHPFQIYNPQTLAEY
                     VSQYGTTTFVNDNLFLLLQSGKKKALTILNELKKQPVQYFWWSRYDLQTEVLNEDHVL
                     PFDVRKQWIEHPDVIQGGEMTGWPRLVDGDDLMLHCMQATKKQRKRIEGHFPGASDKT
                     LTKMKLFGADCDHEAMTGDEVMRRLELGYYVSLRNSSIRPDVRKILQELHEKGFRYYD
                     HFFYTTDGATPNFYKGGMTNELIRIALEEGVPAIDAYNMASFNIAKYYQMDDYLGVVG
                     PGRLASLNILEDPLNPNPVTVLSKGTILRENGCDLKAFTKTDWHKGGLVPLELSYDMT
                     MDDLQFSMPMGVKMRNAVIMEPYMIEIDNSMEQLSFDHDESYLTMLDRHGKWRVNTMI
                     KGFASSVQGFVSSFTTTGDIVAIGKNKADMLLAFARMKEIGGGIVLAENGNILHEIPL
                     ALCGCASSEAYEDVLEKEQKLRDLLTERGYEFCDPIYTLLFLQSTHLPYIRITPRGIF
                     DVMKKTVLFPSIMR*"
     gene            695632..697374
                     /gene="yerA"
                     /locus_tag="BSU_06560"
                     /old_locus_tag="BSU06560"
     promotor_-10    complement(695909..695920)
                     /Source="Nicolas_upshift_promotors"
                     /id="U504"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=923
                     /SigmaFactorBS="aaaaataagttatcattcacgaatgtcgttgttccgtattga
                     gaCACATATtccgccagtgtttGGGGATTATATAtttgaaaaggatgtgcgtgcggtt
                     c"
                     /listShort="S233, yezF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(695924)
                     /Source="Nicolas_upshifts"
                     /id="U504"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=923
                     /SigmaFactorBS="aaaaataagttatcattcacgaatgtcgttgttccgtattga
                     gaCACATATtccgccagtgtttGGGGATTATATAtttgaaaaggatgtgcgtgcggtt
                     c"
                     /listShort="S233, yezF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(695934..695940)
                     /Source="Nicolas_upshift_promotors"
                     /id="U504"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=923
                     /SigmaFactorBS="aaaaataagttatcattcacgaatgtcgttgttccgtattga
                     gaCACATATtccgccagtgtttGGGGATTATATAtttgaaaaggatgtgcgtgcggtt
                     c"
                     /listShort="S233, yezF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      695955
                     /Source="Nicolas_upshifts"
                     /id="D323"
                     /incds=1
                     /nref=13
                     /ntot=109
                     /MaxReadThrough="7.92321"
                     /MaxDrop="3.44855"
                     /score="1.68718502"
                     /energy="-14.2"
                     /TU="U503"
                     /idTUdmin="U498"
                     /TUdmin=2570
                     /isTUend="FALSE"
     promotor_-35    697348..697354
                     /Source="Nicolas_upshift_promotors"
                     /id="U505"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.4995004995005"
                     /psig="0.996003996003996"
                     /xcortree=2171
                     /SigmaFactorBS="cgcattacgccaagaggaatattcgacgtcatgaaaaaaact
                     GTACTCTttccatcgataaTGCGTTAAAATATAAAAGAGcagggagccgacatatgaa
                     a"
                     /listShort="yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        697366
                     /Source="Nicolas_upshifts"
                     /id="U505"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.4995004995005"
                     /psig="0.996003996003996"
                     /xcortree=2171
                     /SigmaFactorBS="cgcattacgccaagaggaatattcgacgtcatgaaaaaaact
                     GTACTCTttccatcgataaTGCGTTAAAATATAAAAGAGcagggagccgacatatgaa
                     a"
                     /listShort="yerB, yerC"
                     /GFF_Attribute="listLong"
     promotor_-10    697367..697386
                     /Source="Nicolas_upshift_promotors"
                     /id="U505"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.4995004995005"
                     /psig="0.996003996003996"
                     /xcortree=2171
                     /SigmaFactorBS="cgcattacgccaagaggaatattcgacgtcatgaaaaaaact
                     GTACTCTttccatcgataaTGCGTTAAAATATAAAAGAGcagggagccgacatatgaa
                     a"
                     /listShort="yerB, yerC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             697401..698396
                     /gene="yerB"
                     /locus_tag="BSU_06570"
                     /old_locus_tag="BSU06570"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12073041; Product type
                     lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388539.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06570"
                     /db_xref="EnsemblGenomes-Tr:CAB12477"
                     /db_xref="GOA:O34968"
                     /db_xref="InterPro:IPR021416"
                     /db_xref="InterPro:IPR023158"
                     /db_xref="InterPro:IPR035328"
                     /db_xref="PDB:2PSB"
                     /db_xref="SubtiList:BG12830"
                     /db_xref="UniProtKB/Swiss-Prot:O34968"
                     /translation="MKKWMTVCALCFVFFLLVSCQQKDAVPDTAKKLKAPLTGLKTEQ
                     KVTERRPVAVVVNNHPKARPQSGLSKADIVIEALAEGQITRFLAIFQSQMPETVGPVR
                     SAREYFVTLSNGFDSIFVHHGWSPGAKKQLESGAADYMNGLDFDGSLFWRADFSKPPH
                     NSYTSYDYIKKAAEQKGYKLKQETNPLLFQTSDAKPANESYNVRVDYGTNNVTNLVEY
                     NYDKKAEFYTRSSDGVITTDRETGKPVAMQNIFIVEASHHIIDQDGRRDIDLESGGKG
                     LLFQHGNVIETDWKQVNGRIVPVKDGKWLPFVPGKTWINIVPDLDAASISKGEGV*"
     gene            697401..698396
                     /gene="yerB"
                     /locus_tag="BSU_06570"
                     /old_locus_tag="BSU06570"
     CDS             698399..698713
                     /gene="yerC"
                     /locus_tag="BSU_06580"
                     /old_locus_tag="BSU06580"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 23504016, 26735940;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor-histidine operons"
                     /protein_id="NP_388540.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06580"
                     /db_xref="EnsemblGenomes-Tr:CAB12478"
                     /db_xref="GOA:Q7BVT7"
                     /db_xref="InterPro:IPR000831"
                     /db_xref="InterPro:IPR010921"
                     /db_xref="InterPro:IPR013368"
                     /db_xref="SubtiList:BG12831"
                     /db_xref="UniProtKB/Swiss-Prot:Q7BVT7"
                     /translation="MQIDKLRGKELDQLFNSILSLKDLEECYRFFDDLCTINEIQSLA
                     QRLEVARMLREGNTYHKIETETGASTATISRVKRCLNYGNDAYEMALDRVKETETESS
                     SK*"
     gene            698399..698713
                     /gene="yerC"
                     /locus_tag="BSU_06580"
                     /old_locus_tag="BSU06580"
     downshifts      698576
                     /Source="Nicolas_upshifts"
                     /id="D324"
                     /incds=1
                     /nref=1
                     /ntot=25
                     /MaxReadThrough="7.1005"
                     /MaxDrop="2.3494"
                     /score="10.9674476"
                     /energy="-15.8"
                     /TU="U503,U505"
                     /idTUdmin="U503"
                     /TUdmin="-374"
                     /isTUend="FALSE"
     downshifts      698718
                     /Source="Nicolas_upshifts"
                     /id="D325"
                     /incds=0
                     /nref=78
                     /ntot=262
                     /MaxReadThrough="3.58776"
                     /MaxDrop="5.59364"
                     /score="10.9674476"
                     /energy="-15.8"
                     /TU="U503,U505"
                     /idTUdmin="U503"
                     /TUdmin="-232"
                     /isTUend="FALSE"
     CDS             complement(698748..700325)
                     /gene="yerD"
                     /locus_tag="BSU_06590"
                     /old_locus_tag="BSU06590"
                     /EC_number="1.4.1.13"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15805528, 17114254,
                     19948795; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative osmotic shock glutamate synthase
                     subunit (flavoprotein subunit, ferredoxin-dependent)"
                     /protein_id="NP_388541.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06590"
                     /db_xref="EnsemblGenomes-Tr:CAB12479"
                     /db_xref="GOA:O34849"
                     /db_xref="InterPro:IPR002932"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR024188"
                     /db_xref="InterPro:IPR027283"
                     /db_xref="SubtiList:BG12832"
                     /db_xref="UniProtKB/Swiss-Prot:O34849"
                     /translation="METIIIALIAFIIGIIAIPIVLFAWIYIKDEKQQEHSILRNYPV
                     IGRFRYILEKIGPELRQYLYSNDNEEQPFSRKEYEQTVISGKYKSRMMGFGSVRDFDK
                     PGYYIRNAMFPKQREEMHVNQTPKIETQIYKMDADNLFKRKEHAEHIKADPYFLHPDD
                     VQVIGEHTCEKPFYVKGLVGQSAMSYGSLGERAVTALSKGLHLAGGTWMNTGEGGLSE
                     YHLKGGADIICQIGPGLFGVRKRNGEFSWEEFKRKSRIDQIKAFELKLAQGAKTRGGH
                     VDGAKVSEEVADIRNVEPGKSIDSPNRFYEFSNPPEMLDFIEKLRDVGQKPVGIKLVA
                     GHPEELHELFSHMQKSGKHPDFITIDGSEGGTGASFYELADTVGLPIMTALPIVDTLL
                     KQYGLRSQLKIFASGKLLTPDKIAVALALGADFVNIARGMMFSVGCIRALVCHTNTCP
                     AGVATTDPKLQKALSVEEKQHRVCNYVISLREGLFNLAAAAGINSPIHFSKEHVVYRK
                     EDGSIINIDNLIHQFVS*"
     gene            complement(698748..700325)
                     /gene="yerD"
                     /locus_tag="BSU_06590"
                     /old_locus_tag="BSU06590"
     downshifts      complement(698762)
                     /Source="Nicolas_upshifts"
                     /id="D326"
                     /incds=0
                     /nref=7
                     /ntot=24
                     /MaxReadThrough="2.99325"
                     /MaxDrop="5.6389"
                     /score="34.8793815"
                     /energy="-15.8"
                     /TU="U506"
                     /idTUdmin="U506"
                     /TUdmin="-88"
                     /isTUend="FALSE"
     promotor_-10    complement(700339..700358)
                     /Source="Nicolas_upshift_promotors"
                     /id="U506"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=244
                     /SigmaFactorBS="ggcaggagcacacatttttcaccagattccttctgctatTGT
                     TTGGaaagtgttctactgTGGAAATGGTTACATAAAAAgggaggctgagagatggaaa
                     c"
                     /listShort="yerD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(700358)
                     /Source="Nicolas_upshifts"
                     /id="U506"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=244
                     /SigmaFactorBS="ggcaggagcacacatttttcaccagattccttctgctatTGT
                     TTGGaaagtgttctactgTGGAAATGGTTACATAAAAAgggaggctgagagatggaaa
                     c"
                     /listShort="yerD"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(700373..700379)
                     /Source="Nicolas_upshift_promotors"
                     /id="U506"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=244
                     /SigmaFactorBS="ggcaggagcacacatttttcaccagattccttctgctatTGT
                     TTGGaaagtgttctactgTGGAAATGGTTACATAAAAAgggaggctgagagatggaaa
                     c"
                     /listShort="yerD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    700522..700525
                     /Source="Nicolas_upshift_promotors"
                     /id="U507"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2610
                     /SigmaFactorBS="aaaacacctttttcagtgaataacgagattaacggctttttc
                     cGTTTttccgcgctatgtgaaTTTGTTATAATGTTTAAATGgtaacaaacgaatggag
                     g"
                     /listShort="pcrB, pcrA, ligA, yerH, S234, yerI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        700539
                     /Source="Nicolas_upshifts"
                     /id="U507"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2610
                     /SigmaFactorBS="aaaacacctttttcagtgaataacgagattaacggctttttc
                     cGTTTttccgcgctatgtgaaTTTGTTATAATGTTTAAATGgtaacaaacgaatggag
                     g"
                     /listShort="pcrB, pcrA, ligA, yerH, S234, yerI"
                     /GFF_Attribute="listLong"
     promotor_-10    700542..700561
                     /Source="Nicolas_upshift_promotors"
                     /id="U507"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2610
                     /SigmaFactorBS="aaaacacctttttcagtgaataacgagattaacggctttttc
                     cGTTTttccgcgctatgtgaaTTTGTTATAATGTTTAAATGgtaacaaacgaatggag
                     g"
                     /listShort="pcrB, pcrA, ligA, yerH, S234, yerI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             700590..701276
                     /gene="pcrB"
                     /locus_tag="BSU_06600"
                     /old_locus_tag="BSU06600"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16377641, 21761520, 21214173, 27226549"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16377641, 21761520,
                     21214173, 27226549; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenylglyceryl-phosphate synthase"
                     /protein_id="NP_388542.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06600"
                     /db_xref="EnsemblGenomes-Tr:CAB12480"
                     /db_xref="GOA:O34790"
                     /db_xref="InterPro:IPR008205"
                     /db_xref="PDB:1VIZ"
                     /db_xref="PDB:3VZX"
                     /db_xref="PDB:3VZY"
                     /db_xref="PDB:3VZZ"
                     /db_xref="PDB:3W00"
                     /db_xref="SubtiList:BG12833"
                     /db_xref="UniProtKB/Swiss-Prot:O34790"
                     /translation="MYDVTEWKHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVT
                     EDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMK
                     EYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLE
                     YSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRA
                     LKTVAAVKGE*"
     gene            700590..701276
                     /gene="pcrB"
                     /locus_tag="BSU_06600"
                     /old_locus_tag="BSU06600"
     CDS             701338..703557
                     /gene="pcrA"
                     /locus_tag="BSU_06610"
                     /old_locus_tag="BSU06610"
                     /EC_number="3.6.4.12"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12073041, 12682299,
                     14594837, 16267290, 26070154; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="NP_388543.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06610"
                     /db_xref="EnsemblGenomes-Tr:CAB12481"
                     /db_xref="GOA:O34580"
                     /db_xref="InterPro:IPR000212"
                     /db_xref="InterPro:IPR005751"
                     /db_xref="InterPro:IPR014016"
                     /db_xref="InterPro:IPR014017"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR034739"
                     /db_xref="SubtiList:BG12834"
                     /db_xref="UniProtKB/Swiss-Prot:O34580"
                     /translation="MNYISNQLLSGLNPVQQEAVKTTDGPLLLMAGAGSGKTRVLTHR
                     IAYLMAEKHVAPWNILAITFTNKAAREMKERVESILGPGADDIWISTFHSMCVRILRR
                     DIDRIGINRNFSILDTADQLSVIKGILKERNLDPKKFDPRSILGTISSAKNELTEPEE
                     FSKVAGGYYDQVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDRVPEVLEFYQRKFQ
                     YIHVDEYQDTNRAQYMLVKQLAERFQNLCVVGDSDQSIYRWRGADITNILSFEKDYPN
                     ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKNLWTENDEGIKISYYRGDNEFGEGQ
                     FVAGKIHQLHSTGKRKLSDIAILYRTNAQSRVIEETLLKAGLNYNIVGGTKFYDRKEI
                     KDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGLSFFQAIQQVDF
                     IGVSAKAANALDSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSR
                     LENIDEFLSVTKNFEQKSEDKTLVAFLTDLALIADIDQLDQKEEESGGKDAITLMTLH
                     AAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEERRLAYVGITRAEQELYLTNAKMR
                     TLFGRTNMNPESRFIAEIPDDLLENLNEKKETRATSARKMQPRRGPVSRPVSYASKTG
                     GDTLNWAVGDKAGHKKWGTGTVVSVKGEGEGTELDIAFPSPVGVKRLLAAFAPIEKQ*
                     "
     gene            701338..703557
                     /gene="pcrA"
                     /locus_tag="BSU_06610"
                     /old_locus_tag="BSU06610"
     CDS             703581..705587
                     /gene="ligA"
                     /locus_tag="BSU_06620"
                     /old_locus_tag="BSU06620"
                     /EC_number="6.5.1.2"
                     /function="16.6: Maintain"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:164915, 11095673, 12682299, 16267290"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 164915, 11095673,
                     12682299, 16267290; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase (NAD-dependent)"
                     /protein_id="NP_388544.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06620"
                     /db_xref="EnsemblGenomes-Tr:CAB12482"
                     /db_xref="GOA:O31498"
                     /db_xref="InterPro:IPR001357"
                     /db_xref="InterPro:IPR001679"
                     /db_xref="InterPro:IPR003583"
                     /db_xref="InterPro:IPR004149"
                     /db_xref="InterPro:IPR004150"
                     /db_xref="InterPro:IPR010994"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR013839"
                     /db_xref="InterPro:IPR013840"
                     /db_xref="InterPro:IPR018239"
                     /db_xref="InterPro:IPR033136"
                     /db_xref="InterPro:IPR036420"
                     /db_xref="SubtiList:BG12835"
                     /db_xref="UniProtKB/Swiss-Prot:O31498"
                     /translation="MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQEL
                     IAIEEEHPDLRTPDSPTQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQ
                     SVGDDVAYNVELKIDGLAVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMN
                     RELSIEVRGEAYMPKRSFEALNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLD
                     IFVYSIAELDEMGVETQSQGLDFLDELGFKTNQERKKCGSIEEVITLIDELQAKRADL
                     PYEIDGIVIKVDSLDQQEELGFTAKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVIT
                     PTAILEPVKVAGTTVSRASLHNEDLIKEKDIRILDKVVVKKAGDIIPEVVNVLVDQRT
                     GEEKEFSMPTECPECGSELVRIEGEVALRCINPECPAQIREGLIHFVSRNAMNIDGLG
                     ERVITQLFEENLVRNVADLYKLTKERVIQLERMGEKSTENLISSIQKSKENSLERLLF
                     GLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAVDEIGEKMADAVITYFHKEEMLE
                     LLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTIVLTGKLEELSRNEAKAQIEALGGK
                     LTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEEQLMGELKK*"
     gene            703581..705587
                     /gene="ligA"
                     /locus_tag="BSU_06620"
                     /old_locus_tag="BSU06620"
     CDS             705603..706793
                     /gene="yerH"
                     /locus_tag="BSU_06630"
                     /old_locus_tag="BSU06630"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16267290; Product type
                     lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_388545.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06630"
                     /db_xref="EnsemblGenomes-Tr:CAB12483"
                     /db_xref="GOA:O34629"
                     /db_xref="InterPro:IPR011426"
                     /db_xref="SubtiList:BG12836"
                     /db_xref="UniProtKB/Swiss-Prot:O34629"
                     /translation="MKKTLALAATAAVLMLSACSSGFGGEKEEEITQKTAKSSEKAIV
                     PKYNISDSYYKMVLPFKAGKARGLTTEQLNTRLDIDEFETGLMRLAQDSFSTDDYLFQ
                     EGQYLDEDTVLSWLARKKTGSDLKKAEKEDKNFKNEGLNPALPSSGSTEEKNESSPIY
                     LASMLEHDYLVRKDKNSIQLGGVMIGLALNSVYYYREKTGDPQKEVEIKDSTLRQQGE
                     KIAQEVINRLRKKDNLKNVPITVALYKQASKTSIVPGNFIAKTEVKAGSTDISNWDDI
                     NEKYVFYPADTTTAEKYPDDTEVFKRFKNSIEEYFPNYTGVVGTALYENDEMKKMKID
                     IPMQFYGKSEVVAFTQFLTGEVMDYYSKSSVDVEVNITSSDGQEAVIIRNAGDKEPTV
                     HIYD*"
     gene            705603..706793
                     /gene="yerH"
                     /locus_tag="BSU_06630"
                     /old_locus_tag="BSU06630"
     misc_feature    complement(705798..705802)
                     /Source="Nicolas_upshift_promotors"
                     /id="U508"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.986013986013986"
                     /psig="0.000999000999001"
                     /xcortree=36
                     /SigmaFactorBS="atcagccctgtttcaaattcgtcaatgtccagccttgtattc
                     agctgttccgttgttaagCCGCGcgctttgcctgccttaaacggcagcaccattttgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(705802)
                     /Source="Nicolas_upshifts"
                     /id="U508"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.986013986013986"
                     /psig="0.000999000999001"
                     /xcortree=36
                     /SigmaFactorBS="atcagccctgtttcaaattcgtcaatgtccagccttgtattc
                     agctgttccgttgttaagCCGCGcgctttgcctgccttaaacggcagcaccattttgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    706830..706849
                     /Source="Nicolas_upshift_promotors"
                     /id="U509"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=3168
                     /SigmaFactorBS="tcacatttatgactgatagaaaacccttgtgccatattggca
                     caagggttttTATGTTACAATTAACAGGAAaagggaaaatattttcacttctgccgaa
                     a"
                     /listShort="S234, yerI"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       706838..706954
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_724870_724986"
                     /HighExp="LoTm, B60, Lbstat, B36, BI, M9-stat, T1.30H,
                     ferm, T3.30H, M40t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S234"
     upshifts        706838
                     /Source="Nicolas_upshifts"
                     /id="U509"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=3168
                     /SigmaFactorBS="tcacatttatgactgatagaaaacccttgtgccatattggca
                     caagggttttTATGTTACAATTAACAGGAAaagggaaaatattttcacttctgccgaa
                     a"
                     /listShort="S234, yerI"
                     /GFF_Attribute="listLong"
     downshifts      complement(706902)
                     /Source="Nicolas_upshifts"
                     /id="D327"
                     /incds=0
                     /nref=2
                     /ntot=118
                     /MaxReadThrough="1.21197"
                     /MaxDrop="3.77048"
                     /score="18.5253059"
                     /energy="-17.7"
                     /TU="NA"
                     /idTUdmin="U511"
                     /TUdmin=1122
                     /isTUend="FALSE"
     CDS             706955..707965
                     /gene="yerI"
                     /locus_tag="BSU_06640"
                     /old_locus_tag="BSU06640"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative kinase"
                     /protein_id="NP_388546.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06640"
                     /db_xref="EnsemblGenomes-Tr:CAB12484"
                     /db_xref="InterPro:IPR002575"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="SubtiList:BG12837"
                     /db_xref="UniProtKB/Swiss-Prot:O34640"
                     /translation="MLDVHKDIKKIFHEEQVLAEAAARYGFSKDQVRFLADAENYVYE
                     CMKDNQPYILKITHTIRRSSDYMMGEMEWLRHLAIGGISVAKPLPSLNGKDVEAVPDG
                     NGGSFLLRVYEKAPGQKVDESDWNETLFYELGRYTGSMHSLTKSYKLSNPAFKRQEWD
                     EEEQLKLRKYVPEDQIKVFQQADSLMNELRRLPKSQDNYGLVHADLHHGNFNWDHGKI
                     TAFDFDDIGYNWFVNDISILLYNVLWYPVVPYDDKAAFTEEFMTHFMKGYWEENELDP
                     AWLMIIPDFLRLRHMLIYGLLHQMFDLNTIGEEEKEMLAGFRRDIENGTPITAFDFSA
                     LV*"
     gene            706955..707965
                     /gene="yerI"
                     /locus_tag="BSU_06640"
                     /old_locus_tag="BSU06640"
     promotor_no_box complement(706972..707072)
                     /Source="Nicolas_upshift_promotors"
                     /id="U510"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.993006993006993"
                     /psig=0
                     /xcortree=53
                     /SigmaFactorBS="tttccgcatcagccagaaaacgcacctgatcttttgagaaac
                     cgtatctcgctgcagcttctgccaaaacctgctcttcatgaaatatttttttgatatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(707012)
                     /Source="Nicolas_upshifts"
                     /id="U510"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.993006993006993"
                     /psig=0
                     /xcortree=53
                     /SigmaFactorBS="tttccgcatcagccagaaaacgcacctgatcttttgagaaac
                     cgtatctcgctgcagcttctgccaaaacctgctcttcatgaaatatttttttgatatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      707948
                     /Source="Nicolas_upshifts"
                     /id="D328"
                     /incds=0
                     /nref=137
                     /ntot=253
                     /MaxReadThrough="3.07041"
                     /MaxDrop="5.10987"
                     /score="12.7441524"
                     /energy="-17"
                     /TU="NA"
                     /idTUdmin="U507"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       707992..708796
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_726024_726828"
                     /HighExp="B60, B36, LoTm, M9-stat, Cold, T1.30H, T0.30H,
                     ferm, Lbstat, LBGstat"
                     /AntisenseName="sapB"
                     /AntisenseCor="-0.57665624439942198"
                     /AntisenseRegPval="-24.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S235"
     CDS             complement(708003..708701)
                     /gene="sapB"
                     /locus_tag="BSU_06650"
                     /old_locus_tag="BSU06650"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 410907, 9043134,
                     14708580, 27350030, 28181542; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative magnesium transporter"
                     /protein_id="NP_388547.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06650"
                     /db_xref="EnsemblGenomes-Tr:CAB12485"
                     /db_xref="GOA:Q45514"
                     /db_xref="InterPro:IPR003416"
                     /db_xref="SubtiList:BG11845"
                     /db_xref="UniProtKB/Swiss-Prot:Q45514"
                     /translation="MLLSWYIDPDILLKLGIATLIGMVIGLERELKNKPLGLKTCIVI
                     AVSSCMLTIVSINAAYHFPKYYRIMMDPLRLPAQIISGVGFIGAGVILRKSNDVISGL
                     TTSAMIWGAAGLGLATGAGFYKEAFASLLFILISVEFLPWVVRKIGPDRLQEKDIRIR
                     MSLSDKDKMTEILKEMKRRDIKAHSVRIDDLGEKDFPIMEVKVRVHKNRYTTDVYYDI
                     KAIEGVVGVKCDTL*"
     gene            complement(708003..708701)
                     /gene="sapB"
                     /locus_tag="BSU_06650"
                     /old_locus_tag="BSU06650"
     downshifts      complement(708024)
                     /Source="Nicolas_upshifts"
                     /id="D329"
                     /incds=0
                     /nref=26
                     /ntot=129
                     /MaxReadThrough="2.5379"
                     /MaxDrop="3.83708"
                     /score="20.8493264"
                     /energy="-16.2"
                     /TU="NA"
                     /idTUdmin="U511"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(708721..708739)
                     /Source="Nicolas_upshift_promotors"
                     /id="U511"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.684315684315684"
                     /psig="0.684315684315684"
                     /xcortree=1465
                     /SigmaFactorBS="aagccatcaagcgcagcttggtggcttttgtgctcttgtttt
                     GCTATAaatactgtgagaaaaTCATATTTATTTAAAAACAccatagagaagggggaag
                     t"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(708742)
                     /Source="Nicolas_upshifts"
                     /id="U511"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.684315684315684"
                     /psig="0.684315684315684"
                     /xcortree=1465
                     /SigmaFactorBS="aagccatcaagcgcagcttggtggcttttgtgctcttgtttt
                     GCTATAaatactgtgagaaaaTCATATTTATTTAAAAACAccatagagaagggggaag
                     t"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(708755..708760)
                     /Source="Nicolas_upshift_promotors"
                     /id="U511"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.684315684315684"
                     /psig="0.684315684315684"
                     /xcortree=1465
                     /SigmaFactorBS="aagccatcaagcgcagcttggtggcttttgtgctcttgtttt
                     GCTATAaatactgtgagaaaaTCATATTTATTTAAAAACAccatagagaagggggaag
                     t"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(708808..710286)
                     /gene="opuE"
                     /locus_tag="BSU_06660"
                     /old_locus_tag="BSU06660"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:9701821, 11902719, 14996799, 15849754, 16850406,
                     17183215, 22685134"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9701821, 11902719,
                     14996799, 15849754, 16850406, 17183215, 22685134; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proline transporter"
                     /protein_id="NP_388548.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06660"
                     /db_xref="EnsemblGenomes-Tr:CAB12486"
                     /db_xref="GOA:O06493"
                     /db_xref="InterPro:IPR001734"
                     /db_xref="InterPro:IPR011851"
                     /db_xref="InterPro:IPR018212"
                     /db_xref="SubtiList:BG12641"
                     /db_xref="UniProtKB/Swiss-Prot:O06493"
                     /translation="MSIEIIISLGIYFIAMLLIGWYAFKKTTDINDYMLGGRGLGPFV
                     TALSAGAADMSGWMLMGVPGAMFATGLSTLWLALGLTIGAYSNYLLLAPRLRAYTEAA
                     DDAITIPDFFDKRFQHSSSLLKIVSALIIMIFFTLYTSSGMVSGGRLFESAFGADYKL
                     GLFLTTAVVVLYTLFGGFLAVSLTDFVQGAIMFAALVLVPIVAFTHVGGVAPTFHEID
                     AVNPHLLDIFKGASVISIISYLAWGLGYYGQPHIIVRFMAIKDIKDLKPARRIGMSWM
                     IITVLGSVLTGLIGVAYAHKFGVAVKDPEMIFIIFSKILFHPLITGFLLSAILAAIMS
                     SISSQLLVTASAVTEDLYRSFFRRKASDKELVMIGRLSVLVIAVIAVLLSLNPNSTIL
                     DLVGYAWAGFGSAFGPAILLSLYWKRMNEWGALAAMIVGAATVLIWITTGLAKSTGVY
                     EIIPGFILSMIAGIIVSMITKRPAKASYRLFGVMEKLLKRKK*"
     gene            complement(708808..710286)
                     /gene="opuE"
                     /locus_tag="BSU_06660"
                     /old_locus_tag="BSU06660"
     downshifts      complement(708822)
                     /Source="Nicolas_upshifts"
                     /id="D330"
                     /incds=0
                     /nref=43
                     /ntot=142
                     /MaxReadThrough="5.35634"
                     /MaxDrop="4.34381"
                     /score="9.43100511"
                     /energy="-13.8"
                     /TU="U512,U513"
                     /idTUdmin="U511"
                     /TUdmin="-798"
                     /isTUend="FALSE"
     upshifts        complement(709674)
                     /Source="Nicolas_upshifts"
                     /id="U512"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.475524475524476"
                     /psig="0.475524475524476"
                     /xcortree=138
                     /SigmaFactorBS="gacttcgtgcagggtgcgatcatgtttgcagcactagtgctt
                     gtGCCGATCGTTGCTTttacccatgtgggcggcgttgctccgactttccatgaaatcg
                     a"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
     misc_feature    complement(709677..709690)
                     /Source="Nicolas_upshift_promotors"
                     /id="U512"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="Sig-"
                     /pcomp="0.475524475524476"
                     /psig="0.475524475524476"
                     /xcortree=138
                     /SigmaFactorBS="gacttcgtgcagggtgcgatcatgtttgcagcactagtgctt
                     gtGCCGATCGTTGCTTttacccatgtgggcggcgttgctccgactttccatgaaatcg
                     a"
                     /listShort="sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       complement(710287..710417)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_728319_728449_c"
                     /HighExp="Salt, HiOs, Etha, Gly, MG 25, MG 45, M9-exp, MG
                     t5, MG 15, GM 5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.954"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S236"
     promotor_-10    complement(710408..710426)
                     /Source="Nicolas_upshift_promotors"
                     /id="U513"
                     /multdbtbs="SigA,SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.954045954045954"
                     /psig="0.954045954045954"
                     /xcortree=137
                     /SigmaFactorBS="tttgcaacggtatttccagcttatgatcaaTGTTTCAtcgct
                     tgaatggccGGGAATACTTTGTTAGGTTaagttaccaagtgcacccgcaaaagaattt
                     c"
                     /listShort="S236, opuE, sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(710417)
                     /Source="Nicolas_upshifts"
                     /id="U513"
                     /multdbtbs="SigA,SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.954045954045954"
                     /psig="0.954045954045954"
                     /xcortree=137
                     /SigmaFactorBS="tttgcaacggtatttccagcttatgatcaaTGTTTCAtcgct
                     tgaatggccGGGAATACTTTGTTAGGTTaagttaccaagtgcacccgcaaaagaattt
                     c"
                     /listShort="S236, opuE, sapB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(710441..710447)
                     /Source="Nicolas_upshift_promotors"
                     /id="U513"
                     /multdbtbs="SigA,SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.954045954045954"
                     /psig="0.954045954045954"
                     /xcortree=137
                     /SigmaFactorBS="tttgcaacggtatttccagcttatgatcaaTGTTTCAtcgct
                     tgaatggccGGGAATACTTTGTTAGGTTaagttaccaagtgcacccgcaaaagaattt
                     c"
                     /listShort="S236, opuE, sapB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    710548..710551
                     /Source="Nicolas_upshift_promotors"
                     /id="U514"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.88011988011988"
                     /psig="0.999000999001"
                     /xcortree=2562
                     /SigmaFactorBS="ttcaaaaaataattaaagtaaaaatattcagaaaaatatttc
                     GTTTctccttctcctcatttTAGTATAAAATATATAGGGTattgtttcgaaaacacag
                     g"
                     /listShort="S237, gatC, gatA, gatB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       710566..710699
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_728598_728731"
                     /HighExp="G180, G150, LBGexp, Oxctl, Paraq, dia0, G135,
                     Lbexp, H2O2, LBGtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S237"
     upshifts        710566
                     /Source="Nicolas_upshifts"
                     /id="U514"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.88011988011988"
                     /psig="0.999000999001"
                     /xcortree=2562
                     /SigmaFactorBS="ttcaaaaaataattaaagtaaaaatattcagaaaaatatttc
                     GTTTctccttctcctcatttTAGTATAAAATATATAGGGTattgtttcgaaaacacag
                     g"
                     /listShort="S237, gatC, gatA, gatB"
                     /GFF_Attribute="listLong"
     promotor_-10    710568..710587
                     /Source="Nicolas_upshift_promotors"
                     /id="U514"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.88011988011988"
                     /psig="0.999000999001"
                     /xcortree=2562
                     /SigmaFactorBS="ttcaaaaaataattaaagtaaaaatattcagaaaaatatttc
                     GTTTctccttctcctcatttTAGTATAAAATATATAGGGTattgtttcgaaaacacag
                     g"
                     /listShort="S237, gatC, gatA, gatB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             710700..710990
                     /gene="gatC"
                     /locus_tag="BSU_06670"
                     /old_locus_tag="BSU06670"
                     /EC_number="6.3.5.7"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9342321, 11445070, 12682299, 25005615"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9342321, 11445070,
                     12682299, 25005615; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA(Gln) amidotransferase (subunit C)"
                     /protein_id="NP_388549.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06670"
                     /db_xref="EnsemblGenomes-Tr:CAB12487"
                     /db_xref="GOA:O06492"
                     /db_xref="InterPro:IPR003837"
                     /db_xref="InterPro:IPR036113"
                     /db_xref="SubtiList:BG12838"
                     /db_xref="UniProtKB/Swiss-Prot:O06492"
                     /translation="MSRISIEEVKHVAHLARLAITEEEAKMFTEQLDSIISFAEELNE
                     VNTDNVEPTTHVLKMKNVMREDEAGKGLPVEDVMKNAPDHKDGYIRVPSILD*"
     gene            710700..710990
                     /gene="gatC"
                     /locus_tag="BSU_06670"
                     /old_locus_tag="BSU06670"
     CDS             711006..712463
                     /gene="gatA"
                     /locus_tag="BSU_06680"
                     /old_locus_tag="BSU06680"
                     /EC_number="6.3.5.7"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11445070, 12682299, 9342321"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11445070, 12682299,
                     9342321; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA(Gln) amidotransferase (subunit A)"
                     /protein_id="NP_388550.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06680"
                     /db_xref="EnsemblGenomes-Tr:CAB12488"
                     /db_xref="GOA:O06491"
                     /db_xref="InterPro:IPR000120"
                     /db_xref="InterPro:IPR004412"
                     /db_xref="InterPro:IPR020556"
                     /db_xref="InterPro:IPR023631"
                     /db_xref="InterPro:IPR036928"
                     /db_xref="SubtiList:BG12839"
                     /db_xref="UniProtKB/Swiss-Prot:O06491"
                     /translation="MSLFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFL
                     ALDEERARAYAKELDEAVDGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPI
                     YDATVVQRLQDAEAVTIGKLNMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAA
                     AVAAGEVPFSLGSDTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITR
                     TVEDNAFLLQAISGVDKMDSTSANVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEA
                     RESVLAALKVLEGLGATWEEVSLPHSKYALATYYLLSSSEASANLARFDGIRYGYRTD
                     NADNLIDLYKQTRAEGFGNEVKRRIMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDV
                     FEKYDVIVGPTTPTPAFKIGENTKDPLTMYANDILTIPVNLAGVPGISVPCGLADGLP
                     LGLQIIGKHFDESTVYRVAHAFEQATDHHKAKPEL*"
     gene            711006..712463
                     /gene="gatA"
                     /locus_tag="BSU_06680"
                     /old_locus_tag="BSU06680"
     CDS             712477..713907
                     /gene="gatB"
                     /locus_tag="BSU_06690"
                     /old_locus_tag="BSU06690"
                     /EC_number="6.3.5.7"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11445070, 12682299, 9342321"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11445070, 12682299,
                     9342321; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA(Gln) amidotransferase (subunit B)"
                     /protein_id="NP_388551.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06690"
                     /db_xref="EnsemblGenomes-Tr:CAB12489"
                     /db_xref="GOA:O30509"
                     /db_xref="InterPro:IPR003789"
                     /db_xref="InterPro:IPR004413"
                     /db_xref="InterPro:IPR006075"
                     /db_xref="InterPro:IPR014746"
                     /db_xref="InterPro:IPR017958"
                     /db_xref="InterPro:IPR017959"
                     /db_xref="InterPro:IPR018027"
                     /db_xref="InterPro:IPR023168"
                     /db_xref="SubtiList:BG12840"
                     /db_xref="UniProtKB/Swiss-Prot:O30509"
                     /translation="MNFETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGY
                     PGVLPVLNKEAVEFAMKAAMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGEN
                     GWIEIEVGGKTKRIGITRLHLEEDAGKLTHTGDGYSLVDFNRQGTPLVEIVSEPDIRT
                     PEEAYAYLEKLKSIIQYTGVSDCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSF
                     AFVQKGLEHEEKRQEQVLLSGGVIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDL
                     VELYIDDEWKERVKASIPELPDERRKRYIEELGLPAYDAMVLTLTKEMADFFEETVQK
                     GAEAKQASNWLMGEVSAYLNAEQKELADVALTPEGLAGMIKLIEKGTISSKIAKKVFK
                     ELIEKGGDAEKIVKEKGLVQISDEGVLLKLVTEALDNNPQSIEDFKNGKDRAIGFLVG
                     QIMKASKGQANPPMVNKILLEEIKKR*"
     gene            712477..713907
                     /gene="gatB"
                     /locus_tag="BSU_06690"
                     /old_locus_tag="BSU06690"
     downshifts      713888
                     /Source="Nicolas_upshifts"
                     /id="D331"
                     /incds=0
                     /nref=257
                     /ntot=266
                     /MaxReadThrough="1.62334"
                     /MaxDrop="8.77378"
                     /score="26.1218607"
                     /energy="-9.6"
                     /TU="NA"
                     /idTUdmin="U514"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(713922..714791)
                     /gene="yerO"
                     /locus_tag="BSU_06700"
                     /old_locus_tag="BSU06700"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (TetR/AcrR
                     family)"
                     /protein_id="NP_388552.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06700"
                     /db_xref="EnsemblGenomes-Tr:CAB12490"
                     /db_xref="GOA:O31500"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR023772"
                     /db_xref="SubtiList:BG12841"
                     /db_xref="UniProtKB/Swiss-Prot:O31500"
                     /translation="MNEKKERIIKTSIRLFAKKGFAATTIQEIASECGISKGAFYLHF
                     KSKEALLLSACEYYIGMSMNKMKNIEEDLAGKPPKEVLKKQIGAQFEDFRDHKDFIVL
                     LLTENIIPENQEIKQYFYKVTMETDKLYRNALLVSYGEGIERYVADLSIMARGIVHSY
                     MNVMVFNGELNIDAEEISAFIIERLDDLVQGLSRSALNPIVSKDIFNPMPAGKDQLLE
                     DIQKVKENSTLPEDITVSLDVIEEELTQDKPRKPIIKGMLSNLAGTNDKEVERLRALI
                     LSLSQFDHKKSSL*"
     gene            complement(713922..714791)
                     /gene="yerO"
                     /locus_tag="BSU_06700"
                     /old_locus_tag="BSU06700"
     downshifts      complement(713964)
                     /Source="Nicolas_upshifts"
                     /id="D332"
                     /incds=0
                     /nref=122
                     /ntot=211
                     /MaxReadThrough="2.21801"
                     /MaxDrop="4.89305"
                     /score="32.2694333"
                     /energy="-11.4"
                     /TU="NA"
                     /idTUdmin="U517"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    714581..714586
                     /Source="Nicolas_upshift_promotors"
                     /id="U515"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.822177822177822"
                     /psig="0.822177822177822"
                     /xcortree=1398
                     /SigmaFactorBS="ccttaggcggctttccggcgagatcttCTTCTAtatttttca
                     ttttgtTCATAGACATACCGATATAatattcacaggcagataacagcagcgcttcttt
                     c"
                     /GFF_Attribute="listShort"
                     /listLong="swrC"
                     /label="promotor_-35"
     promotor_-10    714602..714620
                     /Source="Nicolas_upshift_promotors"
                     /id="U515"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.822177822177822"
                     /psig="0.822177822177822"
                     /xcortree=1398
                     /SigmaFactorBS="ccttaggcggctttccggcgagatcttCTTCTAtatttttca
                     ttttgtTCATAGACATACCGATATAatattcacaggcagataacagcagcgcttcttt
                     c"
                     /GFF_Attribute="listShort"
                     /listLong="swrC"
                     /label="promotor_-10"
     upshifts        714614
                     /Source="Nicolas_upshifts"
                     /id="U515"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.822177822177822"
                     /psig="0.822177822177822"
                     /xcortree=1398
                     /SigmaFactorBS="ccttaggcggctttccggcgagatcttCTTCTAtatttttca
                     ttttgtTCATAGACATACCGATATAatattcacaggcagataacagcagcgcttcttt
                     c"
                     /GFF_Attribute="listShort"
                     /listLong="swrC"
     S_feature       complement(714792..714866)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_732824_732898_c"
                     /HighExp="C30, S1, T3.0H, T4.0H, Salt, T5.0H, T2.0H,
                     T3.30H, MG 150, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S238"
     promotor_-35    714844..714851
                     /Source="Nicolas_upshift_promotors"
                     /id="U516"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.679320679320679"
                     /psig="0.998001998001998"
                     /xcortree=3014
                     /SigmaFactorBS="taatccttgaaaaatttagtaaaattttctggtatatgAGTT
                     GACGttgttgcgttataacGTTTAGTATTATATAGAATGaccagtcagtcaataaaaa
                     a"
                     /listShort="swrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(714860..714879)
                     /Source="Nicolas_upshift_promotors"
                     /id="U517"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig=1
                     /xcortree=3036
                     /SigmaFactorBS="acgtggttcatcatatcctccattacatttttTATTGACTga
                     ctggtcattctaTATAATACTAAACGTTATAAcgcaacaacgtcaactcatataccag
                     a"
                     /listShort="S238, yerO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        714866
                     /Source="Nicolas_upshifts"
                     /id="U516"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.679320679320679"
                     /psig="0.998001998001998"
                     /xcortree=3014
                     /SigmaFactorBS="taatccttgaaaaatttagtaaaattttctggtatatgAGTT
                     GACGttgttgcgttataacGTTTAGTATTATATAGAATGaccagtcagtcaataaaaa
                     a"
                     /listShort="swrC"
                     /GFF_Attribute="listLong"
     promotor_-10    714867..714886
                     /Source="Nicolas_upshift_promotors"
                     /id="U516"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.679320679320679"
                     /psig="0.998001998001998"
                     /xcortree=3014
                     /SigmaFactorBS="taatccttgaaaaatttagtaaaattttctggtatatgAGTT
                     GACGttgttgcgttataacGTTTAGTATTATATAGAATGaccagtcagtcaataaaaa
                     a"
                     /listShort="swrC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(714873)
                     /Source="Nicolas_upshifts"
                     /id="U517"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig=1
                     /xcortree=3036
                     /SigmaFactorBS="acgtggttcatcatatcctccattacatttttTATTGACTga
                     ctggtcattctaTATAATACTAAACGTTATAAcgcaacaacgtcaactcatataccag
                     a"
                     /listShort="S238, yerO"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(714894..714901)
                     /Source="Nicolas_upshift_promotors"
                     /id="U517"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig=1
                     /xcortree=3036
                     /SigmaFactorBS="acgtggttcatcatatcctccattacatttttTATTGACTga
                     ctggtcattctaTATAATACTAAACGTTATAAcgcaacaacgtcaactcatataccag
                     a"
                     /listShort="S238, yerO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             714923..718081
                     /gene="srfP"
                     /locus_tag="BSU_06710"
                     /old_locus_tag="BSU06710"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11709341, 15066026, 15941986, 25366377"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11709341, 15066026,
                     15941986, 25366377; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="surfactin exporter involved in surfactin
                     self-resistance"
                     /protein_id="NP_388553.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06710"
                     /db_xref="EnsemblGenomes-Tr:CAB12491"
                     /db_xref="GOA:O31501"
                     /db_xref="InterPro:IPR001036"
                     /db_xref="InterPro:IPR027463"
                     /db_xref="SubtiList:BG12842"
                     /db_xref="UniProtKB/Swiss-Prot:O31501"
                     /translation="MNHVINFVLKNKFAVWLMTIIVTAAGLYAGMNMKQESIPDVNMP
                     YLTISTTYPGATPSQVADEVTKPVEQAVQNLDGVSVVTSTSYENASSVMIEYDYEKDM
                     DKAKTEAAEALENVNLPDDAKDPEISRYSLNSFPILTLSVSSDKDNLQELTKQVEDSL
                     VSKLEGIEGVASVQVSGQQVEEVEFSFKEDKLKEYGLDEDTVKQVIQGSDVTTPLGLY
                     TFGNEEKSVVVSGDIETIKDLKNMRIPTASASSAGSSAASQAGAQSAQAAQSAQAAAQ
                     VQQSASTAVPTVKLSDIATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADDVK
                     AELKKFKEDHKGFNYSATLDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTL
                     ISVVSIPLSLLIALLVLQQLDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKD
                     EPLRGKALVREATKEMFKPIMSSTIVTIAVFLPLALVGGQIGELFIPFALTIVFALAA
                     SLVISITLVPMLAHSLFKKSLTGAPIKAKEHKPGRLANIYKKVLNWALSHKWITSIIA
                     VLMLLGSLFLVPLIGASYLPSEEEKTMQLTYSPEPGETKKEAENEAEKAEKILLDRKH
                     VDTVQYSLGSGSPLAGGDSNGALFYIKYESDTPDFDKEKDNVLKEIQKQSDRGEWKSQ
                     DFSSSGNNNELTYYVYGDSENDIKDTVKDIEKIMKDEKDLKNVNSGLSSTYDEYTFVA
                     DQEKLSKLGLTASQISQALMSQTSQEPLTTVKKDGKELDVNIKTEKDEYKSVKDLENK
                     KITSATGQEVKIGDVAKVKEGSTSDTVSKRDGKVYADVTGEVTSDNVTAVSAAIQKKI
                     DKLDHPDNVSIDTGGVSADIADSFTKLGLAMLAAIAIVYLVLVITFGGALAPFAILFS
                     LPFTVIGALVGLYVSGETISLNAMIGMLMLIGIVVTNAIVLIDRVIHKEAEGLSTREA
                     LLEAGSTRLRPILMTAIATIGALIPLALGFEGGSQVISKGLGVTVIGGLISSTLLTLL
                     IVPIVYEVLAKFRKKKPGTEEE*"
     gene            714923..718081
                     /gene="srfP"
                     /locus_tag="BSU_06710"
                     /old_locus_tag="BSU06710"
     downshifts      718068
                     /Source="Nicolas_upshifts"
                     /id="D333"
                     /incds=0
                     /nref=76
                     /ntot=243
                     /MaxReadThrough="3.70478"
                     /MaxDrop="4.6624"
                     /score="-3.65521193"
                     /energy="-12.7"
                     /TU="U516"
                     /idTUdmin="U516"
                     /TUdmin="-110"
                     /isTUend="FALSE"
     promotor_-35    718320..718323
                     /Source="Nicolas_upshift_promotors"
                     /id="U518"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2594
                     /SigmaFactorBS="tgtgcgttttcacctgtaagattatgtacattttGTTGcgat
                     ttttttaactCATAGTATAATTAAAGGTTGttagtgtaaaaatggatcggatactctt
                     a"
                     /listShort="dagK, S239, yefA, S240, S241, yefC, S242,
                     yeeA, yeeB, S243, yeeC, S244"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    718338..718357
                     /Source="Nicolas_upshift_promotors"
                     /id="U518"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2594
                     /SigmaFactorBS="tgtgcgttttcacctgtaagattatgtacattttGTTGcgat
                     ttttttaactCATAGTATAATTAAAGGTTGttagtgtaaaaatggatcggatactctt
                     a"
                     /listShort="dagK, S239, yefA, S240, S241, yefC, S242,
                     yeeA, yeeB, S243, yeeC, S244"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        718346
                     /Source="Nicolas_upshifts"
                     /id="U518"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.758241758241758"
                     /psig="0.999000999001"
                     /xcortree=2594
                     /SigmaFactorBS="tgtgcgttttcacctgtaagattatgtacattttGTTGcgat
                     ttttttaactCATAGTATAATTAAAGGTTGttagtgtaaaaatggatcggatactctt
                     a"
                     /listShort="dagK, S239, yefA, S240, S241, yefC, S242,
                     yeeA, yeeB, S243, yeeC, S244"
                     /GFF_Attribute="listLong"
     CDS             718404..719315
                     /gene="dagK"
                     /locus_tag="BSU_06720"
                     /old_locus_tag="BSU06720"
                     /EC_number="2.7.1.107"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10220166, 12682299, 17535816, 22224599, 24700682"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10220166, 12682299,
                     17535816, 22224599, 24700682; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="NP_388554.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06720"
                     /db_xref="EnsemblGenomes-Tr:CAB12492"
                     /db_xref="GOA:O31502"
                     /db_xref="InterPro:IPR001206"
                     /db_xref="InterPro:IPR005218"
                     /db_xref="InterPro:IPR016064"
                     /db_xref="InterPro:IPR017438"
                     /db_xref="SubtiList:BG12843"
                     /db_xref="UniProtKB/Swiss-Prot:O31502"
                     /translation="MKRARIIYNPTSGREIFKKHLAQVLQKFEQAGYETSTHATTCAG
                     DATHAAKEAALREFDLIIAAGGDGTINEVVNGLAPLDNRPTLGVIPVGTTNDFARALG
                     IPREDILKAADTVINGVARPIDIGQVNGQYFINIAGGGRLTELTYDVPSKLKTMLGQL
                     AYYLKGMEMLPSLRPTEVEIEYDGKLFQGEIMLFLVTLTNSVGGFEKLAPDSSLNDGM
                     FDLMILKKANLAEFIRVATMALRGEHINDQHIIYTKANRVKVNVSEKMQLNLDGEYGG
                     MLPGEFVNLYRHIHVVMPKEKAEQLDD*"
     gene            718404..719315
                     /gene="dagK"
                     /locus_tag="BSU_06720"
                     /old_locus_tag="BSU06720"
     S_feature       719316..719570
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_737348_737602"
                     /HighExp="H2O2, Oxctl, Paraq, G180, Cold, C30, G150, G135,
                     Heat, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S239"
     CDS             719571..720950
                     /gene="rlmCD"
                     /locus_tag="BSU_06730"
                     /old_locus_tag="BSU06730"
                     /EC_number="2.1.1.189"
                     /EC_number="2.1.1.190"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:21824914"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21824914; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase of m5U747 and m5U1939 in 23S
                     RNA"
                     /protein_id="NP_388555.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06730"
                     /db_xref="EnsemblGenomes-Tr:CAB12493"
                     /db_xref="GOA:O31503"
                     /db_xref="InterPro:IPR001566"
                     /db_xref="InterPro:IPR002792"
                     /db_xref="InterPro:IPR010280"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="InterPro:IPR030390"
                     /db_xref="InterPro:IPR030391"
                     /db_xref="SubtiList:BG12826"
                     /db_xref="UniProtKB/Swiss-Prot:O31503"
                     /translation="MKMKPPVEKNEYYDVTFEDLTHEGAGVAKVQGFPIFVPNALPEE
                     KAQIKVTRVKKGFAFGRLIELKEESPHRTDAPCPIYKQCGGCQLQHMTYEGQLLFKQK
                     QVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNKAQVPVGEREGGLVAGFYQQRSHDI
                     IDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHIMVRYGVVTGEMMIV
                     FITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLI
                     GDVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFLAKQAK
                     KVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEAETVIPKWYEEGITADTLVVDPPRK
                     GCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLEDGGYVTREVQPVDMFPHTNHVE
                     CCVLIKLKE*"
     gene            719571..720950
                     /gene="rlmCD"
                     /locus_tag="BSU_06730"
                     /old_locus_tag="BSU06730"
     S_feature       720951..721543
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_738983_739575"
                     /HighExp="Cold, H2O2, G135, G150, Oxctl, G180, C30, Paraq,
                     LPh, HPh"
                     /AntisenseName="yefB"
                     /AntisenseCor="0.24913678485492899"
                     /AntisenseRegPval="-4.4000000000000004"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S240"
     CDS             complement(720963..721865)
                     /gene="yefB"
                     /locus_tag="BSU_06740"
                     /old_locus_tag="BSU06740"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 1779754, 1762151;
                     Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative site-specific recombinase / invertase;
                     HGT island"
                     /protein_id="NP_388556.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06740"
                     /db_xref="EnsemblGenomes-Tr:CAB12494"
                     /db_xref="GOA:O34574"
                     /db_xref="InterPro:IPR011109"
                     /db_xref="InterPro:IPR025827"
                     /db_xref="SubtiList:BG12827"
                     /db_xref="UniProtKB/Swiss-Prot:O34574"
                     /translation="MYNEGVTSPSQLARKKNATDKWHGSSIRKILENPHYTGTLQQCR
                     EYRPSVTSKRRRSVNLENQIIIEKSHEPIIPLEDFLIVQEILITRKRRRPQAEVHLFT
                     NTAVCKDCRRSMHFKKNRKGYVCGSYNKHGLKACSDHYVSEIDLTDKVITNLNKIYLK
                     FSKENYFKELSEKALKYKEKIESKIIEINEKLNDKKRDKSNLVISLANGVISKEDYQL
                     AINITNEDISNFETTLHQLSKDLEFQKIEKEIIDFKKSLDKFMKEGTLTPEMLHLLVD
                     EIEVHANGTIEINYRFREPTVPSA*"
     gene            complement(720963..721865)
                     /gene="yefB"
                     /locus_tag="BSU_06740"
                     /old_locus_tag="BSU06740"
     downshifts      721500
                     /Source="Nicolas_upshifts"
                     /id="D334"
                     /incds=1
                     /nref=1
                     /ntot=30
                     /MaxReadThrough="4.70474"
                     /MaxDrop="2.82299"
                     /score="-8.81916201"
                     /energy="-8.8"
                     /TU="U518"
                     /idTUdmin="U516"
                     /TUdmin=3322
                     /isTUend="FALSE"
     S_feature       721545..721845
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_739577_739877"
                     /HighExp="H2O2, Cold, G180, G135, G150, Paraq, Oxctl, C30,
                     LPh, LBGexp"
                     /AntisenseName="yefB"
                     /AntisenseCor="0.202214664414261"
                     /AntisenseRegPval="-3.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S241"
     CDS             721846..722181
                     /gene="yefC"
                     /locus_tag="BSU_06750"
                     /old_locus_tag="BSU06750"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative resolvase; HGT island"
                     /protein_id="NP_388557.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06750"
                     /db_xref="EnsemblGenomes-Tr:CAB12495"
                     /db_xref="GOA:O35034"
                     /db_xref="InterPro:IPR006119"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036162"
                     /db_xref="SubtiList:BG12828"
                     /db_xref="UniProtKB/Swiss-Prot:O35034"
                     /translation="MTPSLYNPLAIASKPFPAIYSEKILIFTIFSAFAEFERDMIVER
                     TQEGKMLAKQNPDFREGRPKKFTKQQINHALTLLENHSYKQVEDMTGISVSTLVRAKK
                     KKAAEAING*"
     gene            721846..722181
                     /gene="yefC"
                     /locus_tag="BSU_06750"
                     /old_locus_tag="BSU06750"
     S_feature       722182..722255
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_740214_740287"
                     /HighExp="G180, H2O2, G150, Cold, G135, Paraq, Oxctl, C30,
                     LPh, dia0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S242"
     CDS             722256..724895
                     /gene="yeeA"
                     /locus_tag="BSU_06760"
                     /old_locus_tag="BSU06760"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative restriction type II methylase; HGT
                     island"
                     /protein_id="NP_388558.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06760"
                     /db_xref="EnsemblGenomes-Tr:CAB12496"
                     /db_xref="GOA:O31504"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="SubtiList:BG12818"
                     /db_xref="UniProtKB/Swiss-Prot:O31504"
                     /translation="MALIDLEDKIAEIVNREDHSDFLYELLGVYDVPRATITRLKKGN
                     QNLTKRVGEVHLKNKVWFKEAKKGKLFDALIDIEQQVEYLSAKPRYLLVTDYDGVLAK
                     DTKTLEALDVKFEELPQYFDFFLAWKGIEKVEFEKENPADIKAAERFARIYDVLRKEN
                     NIIETNRGLDLFLIRLLFCFFAEDTDIFKRNSFTNLIKTLTEEDGSNLNKLFADLFIV
                     LDKNERDDVPSYLKEFPYVNGQLFTEPHTELEFSAKSRKLIIECGELLNWAKINPDIF
                     GSMIQAVASEESRSYLGMHYTSVPNIMKVIKPLFLDKLNQSFLDAYDDYTKLENLLTR
                     IGKIKFFDPACGSGNFLIITYKELRRMEINIIKRLQELLGEYLYVPSVTLSQFYGIEI
                     EDFAHDVAKLSLWIAEHQMNEELKNEVHNAVRPTLPLHTAGDIRCANAIRVEWTEVCP
                     AQGSEEVYVFGNPPYLGSKKQNKEHKSDMLSIFGKVKNGKMLDYISAWFYFGAKYAST
                     TNAKVAFVSTNSVTQGEQVSILWNELFKFGIQINFAYKSFKWANNAKNNAAVIVVIVG
                     FGPLDTKVNKYLFVDETKKLVSNISPYLTDGENILVSSRTKPISDLPKLHFGNMPNDG
                     GGLLFTITEYTDAINKYPELVPYFKKFIGSVEFINGGLRYCLWLNEAKYEKIKSNPLI
                     QERISISKNHREKSTDKGTNKLALTPWKFRDTHETTNYSIVVPSVSSENRFYIPMGLA
                     GADTILSNLIYVIYDAEIYLLGILMSRMHMTWVKAVAGRLKTDYRYSAGLCYNTFPIP
                     ELSTRRKNEIEEAILEILDLREEQGGTLAELYNPSTMPIELKVAHEKLDGIVERAYRQ
                     KQFESDEERLEVLLKLYQEMTER*"
     gene            722256..724895
                     /gene="yeeA"
                     /locus_tag="BSU_06760"
                     /old_locus_tag="BSU06760"
     CDS             724907..726706
                     /gene="yeeB"
                     /locus_tag="BSU_06770"
                     /old_locus_tag="BSU06770"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA helicase / endonuclease; HGT
                     island"
                     /protein_id="NP_388559.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06770"
                     /db_xref="EnsemblGenomes-Tr:CAB12497"
                     /db_xref="GOA:O34469"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12819"
                     /db_xref="UniProtKB/Swiss-Prot:O34469"
                     /translation="MENIIEINYNQTGKSKKTNEYGMREMQARAFEKRNSQYLLVKAP
                     PASGKSRALMFIGLDKLINQGLRKVIVAVPERSIGSSFKNTDLKSYGFFENWKVDPRN
                     NLTVGGDNSKVKSFVRFMESDDQVLICTHSTLRFAFEKIDDKAFDNCLLAIDEFHHVS
                     ADVNSRLGELLRSIIHNSSAHIVAMTGSYFRGDSVPILLPEDEELFDKVTYSYYEQLD
                     GYEYLKGFGIGYHFYQGQYTSAINEVLDTNKKTIVHIPNVNSGESTKDKYDEVGKILD
                     MIGEVEYQDDDTGIIYVKRHSDGKTLKIADLVDDQVGRENVVAYLRNIEALDDLDIII
                     ALGMAKEGFDWPFCEHTLTVGYRGSLTEIVQIIGRCTRDSYNKTYAQFTNLIAMPDAK
                     DEVVTYTVNTMLKAISASLLMEQVLTPDFKFKRRRNESEKSSTTGELFVKGLKEPSTE
                     NVKKIIENDINDLKAKIMQDSQVQKTFSGEVDPKVLNKVLIPKVIQKVYPNLSDEEIE
                     EVRQHVVLDTVMKGAKSEVVGSKEFIRMADKFINIEDLDINLIDSINPFQKAFEVLSK
                     ELNSPVLKLIQETIDAKRINFDEDELVFIWPKV*"
     gene            724907..726706
                     /gene="yeeB"
                     /locus_tag="BSU_06770"
                     /old_locus_tag="BSU06770"
     promotor_-10    complement(725147..725162)
                     /Source="Nicolas_upshift_promotors"
                     /id="U519"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1689
                     /SigmaFactorBS="cagttaaattatttctaggatcaactttccaattttcaaAGA
                     AACCATAactttttaaatCCGTATTTTTAAATGAagaacctatagagcgttcaggtac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(725162)
                     /Source="Nicolas_upshifts"
                     /id="U519"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1689
                     /SigmaFactorBS="cagttaaattatttctaggatcaactttccaattttcaaAGA
                     AACCATAactttttaaatCCGTATTTTTAAATGAagaacctatagagcgttcaggtac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(725174..725183)
                     /Source="Nicolas_upshift_promotors"
                     /id="U519"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1689
                     /SigmaFactorBS="cagttaaattatttctaggatcaactttccaattttcaaAGA
                     AACCATAactttttaaatCCGTATTTTTAAATGAagaacctatagagcgttcaggtac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       726707..726818
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_744739_744850"
                     /HighExp="Cold, G180, G135, G150, H2O2, Paraq, HPh, LPh,
                     Oxctl, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S243"
     CDS             726819..727967
                     /gene="yeeC"
                     /locus_tag="BSU_06780"
                     /old_locus_tag="BSU06780"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; HGT island"
                     /protein_id="NP_388560.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06780"
                     /db_xref="EnsemblGenomes-Tr:CAB12498"
                     /db_xref="InterPro:IPR018306"
                     /db_xref="SubtiList:BG12820"
                     /db_xref="UniProtKB/Swiss-Prot:O34352"
                     /translation="MASNRYHSINEIMESQLFYQITTPPKKTQKAQYDPEVEKFLEII
                     EFVKENGREPQKVPTDLTERSLASRLIGIRKDPDRMEYLKEYDEIGLLEVRSKELTIP
                     KISSIDDILKSGLSALLGDNLNNDITRSIFDTSSLQKVTTMPEYVAKRKKIKDFGKFE
                     ELFKKCHKEITEGKRKILTFKNEQDIQSNSFYILKGVLLYVEDVGERKKAKGKTNARL
                     RCIFENGTESDMLLRSLSAELYKHGRRVTDNEDTLLDNVREDDVSTGFIYVLKSLSTD
                     PQISSIKNLYKIGFTTGSVENRIRNAENQSTYLYAPVEIVTTYQVFNMNASKFETAIH
                     HALANNNLDVSILGANGKMLVPKEWFVVTLEDLQAVIDEIVMMVHLYD*"
     gene            726819..727967
                     /gene="yeeC"
                     /locus_tag="BSU_06780"
                     /old_locus_tag="BSU06780"
     S_feature       727968..729157
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_746000_747189"
                     /HighExp="Cold, G135, H2O2, G180, G150, LPh, C30, HPh,
                     BMM, Paraq"
                     /AntisenseName="yeeD"
                     /AntisenseCor="-0.41772847620445203"
                     /AntisenseRegPval="-12.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S244"
     CDS             complement(728229..728534)
                     /gene="yeeD"
                     /locus_tag="BSU_06790"
                     /old_locus_tag="BSU06790"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; HGT island"
                     /protein_id="NP_388561.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06790"
                     /db_xref="EnsemblGenomes-Tr:CAB12499"
                     /db_xref="SubtiList:BG12821"
                     /db_xref="UniProtKB/Swiss-Prot:O34950"
                     /translation="MTVRKELIKQINLTITVIKTINQKNPTPMVKNILKRYEEAKEFI
                     LQSSDGKFEEDLSKVRNKLDTLTRAYLESANDYMNPMLKEMHKTEKLLKEYDETTQS*
                     "
     gene            complement(728229..728534)
                     /gene="yeeD"
                     /locus_tag="BSU_06790"
                     /old_locus_tag="BSU06790"
     CDS             complement(728601..728807)
                     /gene="yezA"
                     /locus_tag="BSU_06800"
                     /old_locus_tag="BSU06800"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein; HGT island"
                     /protein_id="NP_388562.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06800"
                     /db_xref="EnsemblGenomes-Tr:CAB12500"
                     /db_xref="GOA:O31505"
                     /db_xref="InterPro:IPR000290"
                     /db_xref="InterPro:IPR035900"
                     /db_xref="SubtiList:BG12872"
                     /db_xref="UniProtKB/Swiss-Prot:O31505"
                     /translation="MDKLTKEELIFLVKELMNPTLDDEKVSEYLDLLEKNVPYPAPSD
                     LIFWSNEDYTAEQVVKIALNYKDE*"
     gene            complement(728601..728807)
                     /gene="yezA"
                     /locus_tag="BSU_06800"
                     /old_locus_tag="BSU06800"
     CDS             complement(729047..729502)
                     /gene="yezG"
                     /locus_tag="BSU_06811"
                     /old_locus_tag="BSU06811"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; HGT island"
                     /protein_id="YP_003097692.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06811"
                     /db_xref="EnsemblGenomes-Tr:CAX52579"
                     /db_xref="InterPro:IPR006728"
                     /db_xref="InterPro:IPR036170"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X4"
                     /translation="MQDLYQLIGEKLNDIIPGEWTKIYLYAEVLDDSTMVLFHFRTPE
                     NNQIIYSQDIPSHYNVSKDIFKTLLRELRELFEELRTEHRNNNDDVWTNLTLTLDRSG
                     EFQLDYNYDDILASELDGYERIAIWEYKNLGILPEDEDDKEFVISYLGL*"
     gene            complement(729047..729502)
                     /gene="yezG"
                     /locus_tag="BSU_06811"
                     /old_locus_tag="BSU06811"
     downshifts      complement(729060)
                     /Source="Nicolas_upshifts"
                     /id="D335"
                     /incds=0
                     /nref=41
                     /ntot=213
                     /MaxReadThrough="4.42275"
                     /MaxDrop="5.23695"
                     /score="10.2582155"
                     /energy="-11.7"
                     /TU="U520,U521"
                     /idTUdmin="U520"
                     /TUdmin="-529"
                     /isTUend="FALSE"
     CDS             complement(729522..731531)
                     /gene="yeeF"
                     /locus_tag="BSU_06812"
                     /old_locus_tag="BSU06812"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type h : extrachromosomal
                     origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative nucleic acid binding protein; HGT
                     island"
                     /protein_id="NP_388563.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06812"
                     /db_xref="EnsemblGenomes-Tr:CAB12501"
                     /db_xref="GOA:O31506"
                     /db_xref="InterPro:IPR006829"
                     /db_xref="SubtiList:BG12822"
                     /db_xref="UniProtKB/Swiss-Prot:O31506"
                     /translation="MKVFEAKTLLSEATDRAKEYKELRTQMVNLRKALKGVADLSDSE
                     FSGKGASNIKAFYHDHVGVADQWIDYIDMKIAFFNSIAGAAEDKGLSDAYIEESFLEH
                     ELANANKKSKSIMSEQKKAMKDILNDIDDILPLDLFSTETFKDELADANDKRKKTLEK
                     LDALDEDLKTEYALSEPNEQFIKSDFQKLQEATGKGKNATPIHYNAKAYRESDIHKKK
                     GDIEKRTEAYLKIKKEEAKEREIEKLKERLKNYDYADADEFYEMAKTIGYENLTAEQQ
                     RYFTQIENTRELEAGFKGVAVGLYDSGKDAVVGLWDMVTDPGGTVEAITGAMAHPIKT
                     YEAISAAIEESYQKDMVNGDTYSRARWVSYAVGTVVTSIVGTKGVGAVSKTGTAAKVT
                     TKVKTAASKSATAQKAITVSKQTVDHIKQKVNTGIEVSKKHVKTKLNQIGDLTLADIL
                     PYHPRHDLVPAGVPYNAVNGVTLKEGLQKFAKVILPKPYGTSSSGRRTPAPHVPPVTV
                     KYGEHFARWSRKKVLKPNIIYKTKEGYTYTTDNYGRITSVKADLQLGEAKRNQYAQTN
                     AGKPQDRKPDDDGGHLIATQFKGSGQFDNIVPMNSQINRSGGKWYEMEQEWAKALSKK
                     PPKKVAVQIEPVYSGDSLRPSYFDVTYKIGSRKEISVSIKNQPGG*"
     gene            complement(729522..731531)
                     /gene="yeeF"
                     /locus_tag="BSU_06812"
                     /old_locus_tag="BSU06812"
     promotor_-10    complement(729889..729908)
                     /Source="Nicolas_upshift_promotors"
                     /id="U520"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig="0.999000999001"
                     /xcortree=2752
                     /SigmaFactorBS="aatatcatctacaaaacaaaagaaggctacACGTACacgact
                     gacaacTATGGTAGAATTACAAGTGTcaaagcagacttgcagctgggagaagcgaaac
                     g"
                     /listShort="yezG, yezA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(729896)
                     /Source="Nicolas_upshifts"
                     /id="U520"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig="0.999000999001"
                     /xcortree=2752
                     /SigmaFactorBS="aatatcatctacaaaacaaaagaaggctacACGTACacgact
                     gacaacTATGGTAGAATTACAAGTGTcaaagcagacttgcagctgggagaagcgaaac
                     g"
                     /listShort="yezG, yezA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(729921..729926)
                     /Source="Nicolas_upshift_promotors"
                     /id="U520"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig="0.999000999001"
                     /xcortree=2752
                     /SigmaFactorBS="aatatcatctacaaaacaaaagaaggctacACGTACacgact
                     gacaacTATGGTAGAATTACAAGTGTcaaagcagacttgcagctgggagaagcgaaac
                     g"
                     /listShort="yezG, yezA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(731558..731577)
                     /Source="Nicolas_upshift_promotors"
                     /id="U521"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.994005994005994"
                     /xcortree=2985
                     /SigmaFactorBS="atgactcatttttccaccaaaacacgttctcacccccacctt
                     atcccgaccCGTGGTAAAATTTTGATATTgagcgaacaaaagaagggaaatggtcatg
                     a"
                     /listShort="yeeF, yezG, yezA, yeeD"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(731568)
                     /Source="Nicolas_upshifts"
                     /id="U521"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.976023976023976"
                     /psig="0.994005994005994"
                     /xcortree=2985
                     /SigmaFactorBS="atgactcatttttccaccaaaacacgttctcacccccacctt
                     atcccgaccCGTGGTAAAATTTTGATATTgagcgaacaaaagaagggaaatggtcatg
                     a"
                     /listShort="yeeF, yezG, yezA, yeeD"
                     /GFF_Attribute="listLong"
     CDS             731743..732765
                     /gene="yeeG"
                     /locus_tag="BSU_06820"
                     /old_locus_tag="BSU06820"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage receptor protein"
                     /protein_id="NP_388564.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06820"
                     /db_xref="EnsemblGenomes-Tr:CAB12502"
                     /db_xref="GOA:O31507"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="SubtiList:BG12823"
                     /db_xref="UniProtKB/Swiss-Prot:O31507"
                     /translation="MTKKRITFGLLVLMVCVILFVLYVQLRNKDSIPVQSSAIHPEED
                     RIFFIYSNPFIKESVLLSTSTGERFNRRTFKVADVPYIQTKSYASTDLVLLAEHEPFY
                     YTLEKDVIKEHPLSDPFAFWYEGKDVTIEAYNVDTTGNEIHINDRKTKKEYTLTLPPL
                     VTMGASDENFIYIIQSMSIYVIDRKTEEMIETLSLASYADQFADSEEFIVASSDHKLT
                     VIEKGTWKTTYIAYPEDLEYADTVYYDKESGSFYVAYEDKEGGANLLEYGEDFSIHTY
                     SLKFPYMEAKFKGNLLYIVAQEEHKKGIGGYVGVFDIHSKEMLYQFDLPEEQVKVQDF
                     VVVDNK*"
     gene            731743..732765
                     /gene="yeeG"
                     /locus_tag="BSU_06820"
                     /old_locus_tag="BSU06820"
     promotor_-35    732865..732872
                     /Source="Nicolas_upshift_promotors"
                     /id="U522"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.997002997002997"
                     /xcortree=2961
                     /SigmaFactorBS="caaattgacaggatgaaaaaacaatttcttccttctatATTG
                     TTTTcaaaatttgggatTGATAGAATATGACATATCTcatagagaaggagggaagccg
                     t"
                     /listShort="rapH, phrH, S245, yeeI"
                     /listLong="yeeK"
                     /label="promotor_-35"
     promotor_-10    732886..732905
                     /Source="Nicolas_upshift_promotors"
                     /id="U522"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.997002997002997"
                     /xcortree=2961
                     /SigmaFactorBS="caaattgacaggatgaaaaaacaatttcttccttctatATTG
                     TTTTcaaaatttgggatTGATAGAATATGACATATCTcatagagaaggagggaagccg
                     t"
                     /listShort="rapH, phrH, S245, yeeI"
                     /listLong="yeeK"
                     /label="promotor_-10"
     upshifts        732887
                     /Source="Nicolas_upshifts"
                     /id="U522"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.997002997002997"
                     /xcortree=2961
                     /SigmaFactorBS="caaattgacaggatgaaaaaacaatttcttccttctatATTG
                     TTTTcaaaatttgggatTGATAGAATATGACATATCTcatagagaaggagggaagccg
                     t"
                     /listShort="rapH, phrH, S245, yeeI"
                     /listLong="yeeK"
     CDS             732927..734057
                     /gene="rapH"
                     /locus_tag="BSU_06830"
                     /old_locus_tag="BSU06830"
                     /EC_number="3.1.-.-"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16553878, 21908671"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16553878, 21908671;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator aspartate phosphatase"
                     /protein_id="NP_388565.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06830"
                     /db_xref="EnsemblGenomes-Tr:CAB12503"
                     /db_xref="GOA:Q59HN8"
                     /db_xref="InterPro:IPR011990"
                     /db_xref="InterPro:IPR013026"
                     /db_xref="InterPro:IPR019734"
                     /db_xref="PDB:3Q15"
                     /db_xref="SubtiList:BG11031"
                     /db_xref="UniProtKB/Swiss-Prot:Q59HN8"
                     /translation="MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQME
                     EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSL
                     FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
                     HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF
                     IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQ
                     KAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIE
                     ACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY*"
     gene            732927..734057
                     /gene="rapH"
                     /locus_tag="BSU_06830"
                     /old_locus_tag="BSU06830"
     CDS             734047..734220
                     /gene="phrH"
                     /locus_tag="BSU_06839"
                     /old_locus_tag="BSU06839"
                     /experiment="publication(s) with functional evidences,
                     PMID:16553878, 21908671"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16553878, 21908671;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="hexapeptide (TDRNTT) inhibitor of regulatory
                     cascade"
                     /protein_id="YP_003097693.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06839"
                     /db_xref="EnsemblGenomes-Tr:CAX52580"
                     /db_xref="GOA:Q59HN7"
                     /db_xref="UniProtKB/Swiss-Prot:Q59HN7"
                     /translation="MPIKKKVMMCLAVTLVFGSMSFPTLTNSGGFKESTDRNTTYIDH
                     SPYKLSDQKKALS*"
     gene            734047..734220
                     /gene="phrH"
                     /locus_tag="BSU_06839"
                     /old_locus_tag="BSU06839"
     downshifts      734175
                     /Source="Nicolas_upshifts"
                     /id="D336"
                     /incds=0
                     /nref=3
                     /ntot=66
                     /MaxReadThrough="5.5891"
                     /MaxDrop="2.9063"
                     /score="14.5772672"
                     /energy="-7.6"
                     /TU="U522"
                     /idTUdmin="U522"
                     /TUdmin="-901"
                     /isTUend="FALSE"
     S_feature       734221..734325
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_752253_752357"
                     /HighExp="S2, G/S, T2.30H, GM 150, T3.0H, T2.0H, S1,
                     T-4.40H, T-2.40H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S245"
     promotor_-35    734292..734299
                     /Source="Nicolas_upshift_promotors"
                     /id="U523"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.999000999001"
                     /xcortree=1934
                     /SigmaFactorBS="cattccttctatttctaacgcaagaCACTCGAAacaaccaaa
                     ccattTGAGGTATAATGGATAAAGTgaataacagtatttagattgatatatatgaaag
                     a"
                     /listShort="yeeI, yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    734314..734333
                     /Source="Nicolas_upshift_promotors"
                     /id="U523"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.999000999001"
                     /xcortree=1934
                     /SigmaFactorBS="cattccttctatttctaacgcaagaCACTCGAAacaaccaaa
                     ccattTGAGGTATAATGGATAAAGTgaataacagtatttagattgatatatatgaaag
                     a"
                     /listShort="yeeI, yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        734327
                     /Source="Nicolas_upshifts"
                     /id="U523"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig="0.999000999001"
                     /xcortree=1934
                     /SigmaFactorBS="cattccttctatttctaacgcaagaCACTCGAAacaaccaaa
                     ccattTGAGGTATAATGGATAAAGTgaataacagtatttagattgatatatatgaaag
                     a"
                     /listShort="yeeI, yeeK"
                     /GFF_Attribute="listLong"
     CDS             734380..735099
                     /gene="yeeI"
                     /locus_tag="BSU_06840"
                     /old_locus_tag="BSU06840"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA integrase or transcriptional
                     regulator"
                     /protein_id="NP_388566.3"
                     /db_xref="EnsemblGenomes-Gn:BSU06840"
                     /db_xref="EnsemblGenomes-Tr:CAB12504"
                     /db_xref="GOA:O31509"
                     /db_xref="InterPro:IPR002876"
                     /db_xref="InterPro:IPR017856"
                     /db_xref="InterPro:IPR026562"
                     /db_xref="InterPro:IPR026564"
                     /db_xref="InterPro:IPR029072"
                     /db_xref="SubtiList:BG12824"
                     /db_xref="UniProtKB/Swiss-Prot:O31509"
                     /translation="MGRKWNNIKEKKASKDANTSRIYAKFGREIYVAAKQGEPDPESN
                     QALKVVLERAKTYSVPKNIIERAIEKAKGGAEENYDELRYEGFGPNGSMIIVDALTNN
                     VNRTAPEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVEGKTADEALEILMEADVDVRD
                     ILEEDDSAIVYAEPDQFHAVQEAFKNAGVEEFTVAELTMLAQSEVTLPDDAKEQFEKL
                     IDALEDLEDVQQVYHNVDLGE*"
     gene            734380..735099
                     /gene="yeeI"
                     /locus_tag="BSU_06840"
                     /old_locus_tag="BSU06840"
     downshifts      complement(734382)
                     /Source="Nicolas_upshifts"
                     /id="D337"
                     /incds=0
                     /nref=3
                     /ntot=70
                     /MaxReadThrough="1.42969"
                     /MaxDrop="3.99424"
                     /score="-5.23712559"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U520"
                     /TUdmin="-5851"
                     /isTUend="FALSE"
     promotor_-35    734957..734964
                     /Source="Nicolas_upshift_promotors"
                     /id="U524"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.903096903096903"
                     /xcortree=3101
                     /SigmaFactorBS="gtttaaaaacgcgggtgtcgaggaatttaCAGTAGCGgagct
                     gacaatgcTTGCGCAAAGTGAAGTAACGcttccggatgatgcaaaggaacagtttgaa
                     a"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    734978..734997
                     /Source="Nicolas_upshift_promotors"
                     /id="U524"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.903096903096903"
                     /xcortree=3101
                     /SigmaFactorBS="gtttaaaaacgcgggtgtcgaggaatttaCAGTAGCGgagct
                     gacaatgcTTGCGCAAAGTGAAGTAACGcttccggatgatgcaaaggaacagtttgaa
                     a"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        734988
                     /Source="Nicolas_upshifts"
                     /id="U524"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.903096903096903"
                     /xcortree=3101
                     /SigmaFactorBS="gtttaaaaacgcgggtgtcgaggaatttaCAGTAGCGgagct
                     gacaatgcTTGCGCAAAGTGAAGTAACGcttccggatgatgcaaaggaacagtttgaa
                     a"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
     downshifts      735081
                     /Source="Nicolas_upshifts"
                     /id="D338"
                     /incds=0
                     /nref=223
                     /ntot=271
                     /MaxReadThrough="4.94236"
                     /MaxDrop="5.19148"
                     /score="31.0415099"
                     /energy="-11.4"
                     /TU="U523,U524"
                     /idTUdmin="U522"
                     /TUdmin=5
                     /isTUend="TRUE"
     promotor_-35    735168..735177
                     /Source="Nicolas_upshift_promotors"
                     /id="U525"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1279
                     /SigmaFactorBS="tcccggaaattgttttagctgtatgtaggcggccGCCTATAC
                     GAtctataagatattCTCATACTCTGGACTGTAACctatgtgaaggagagagtaaata
                     t"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    735191..735210
                     /Source="Nicolas_upshift_promotors"
                     /id="U525"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1279
                     /SigmaFactorBS="tcccggaaattgttttagctgtatgtaggcggccGCCTATAC
                     GAtctataagatattCTCATACTCTGGACTGTAACctatgtgaaggagagagtaaata
                     t"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        735194
                     /Source="Nicolas_upshifts"
                     /id="U525"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1279
                     /SigmaFactorBS="tcccggaaattgttttagctgtatgtaggcggccGCCTATAC
                     GAtctataagatattCTCATACTCTGGACTGTAACctatgtgaaggagagagtaaata
                     t"
                     /listShort="yeeK"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(735198..735216)
                     /Source="Nicolas_upshift_promotors"
                     /id="U526"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.935064935064935"
                     /psig="0.935064935064935"
                     /xcortree=1214
                     /SigmaFactorBS="aatgaccaaaaccaggtccgccatacatatgtcttgtatcaG
                     TCATAtttactctctccttcACATAGGTTACAGTCCAGAgtatgagaatatcttatag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(735218)
                     /Source="Nicolas_upshifts"
                     /id="U526"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.935064935064935"
                     /psig="0.935064935064935"
                     /xcortree=1214
                     /SigmaFactorBS="aatgaccaaaaccaggtccgccatacatatgtcttgtatcaG
                     TCATAtttactctctccttcACATAGGTTACAGTCCAGAgtatgagaatatcttatag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(735232..735237)
                     /Source="Nicolas_upshift_promotors"
                     /id="U526"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.935064935064935"
                     /psig="0.935064935064935"
                     /xcortree=1214
                     /SigmaFactorBS="aatgaccaaaaccaggtccgccatacatatgtcttgtatcaG
                     TCATAtttactctctccttcACATAGGTTACAGTCCAGAgtatgagaatatcttatag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             735233..735670
                     /gene="cotK"
                     /locus_tag="BSU_06850"
                     /old_locus_tag="BSU06850"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10714992, 19060142, 19933362"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10714992, 19060142,
                     19933362; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore inner coat protein"
                     /protein_id="NP_388567.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06850"
                     /db_xref="EnsemblGenomes-Tr:CAB12505"
                     /db_xref="GOA:O31510"
                     /db_xref="SubtiList:BG12825"
                     /db_xref="UniProtKB/Swiss-Prot:O31510"
                     /translation="MTDTRHMYGGPGFGHYQGFGIGHPGYGMQSTGYPGYGMYGGHPG
                     YGMQGYPDHGIHGGVGGYPGYGGYGGYPSGGYGGSPGTGSYPSMHHENDGHHHYYHHH
                     HDGKDNLHHHHHHVGKDNHHHHHDGHYGHHHHHMGHWGKDGYK*"
     gene            735233..735670
                     /gene="cotK"
                     /locus_tag="BSU_06850"
                     /old_locus_tag="BSU06850"
     downshifts      complement(735240)
                     /Source="Nicolas_upshifts"
                     /id="D339"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="1.62645"
                     /MaxDrop="3.26146"
                     /score="-5.23712559"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U520"
                     /TUdmin="-6709"
                     /isTUend="FALSE"
     downshifts      735670
                     /Source="Nicolas_upshifts"
                     /id="D340"
                     /incds=0
                     /nref=82
                     /ntot=208
                     /MaxReadThrough="2.37564"
                     /MaxDrop="8.21113"
                     /score="17.7046271"
                     /energy="-9"
                     /TU="U525"
                     /idTUdmin="U523"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    735730..735737
                     /Source="Nicolas_upshift_promotors"
                     /id="U527"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig="0.999000999001"
                     /xcortree=2200
                     /SigmaFactorBS="cttgcagatcaagagtgtttttttagctttttTCTTGACTgt
                     tcagtctggaaaaTGGTAACATTTGTTTCAGGAggtgatcattttttggggaggaata
                     a"
                     /listShort="yezE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    735753..735772
                     /Source="Nicolas_upshift_promotors"
                     /id="U527"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig="0.999000999001"
                     /xcortree=2200
                     /SigmaFactorBS="cttgcagatcaagagtgtttttttagctttttTCTTGACTgt
                     tcagtctggaaaaTGGTAACATTTGTTTCAGGAggtgatcattttttggggaggaata
                     a"
                     /listShort="yezE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        735758
                     /Source="Nicolas_upshifts"
                     /id="U527"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.938061938061938"
                     /psig="0.999000999001"
                     /xcortree=2200
                     /SigmaFactorBS="cttgcagatcaagagtgtttttttagctttttTCTTGACTgt
                     tcagtctggaaaaTGGTAACATTTGTTTCAGGAggtgatcattttttggggaggaata
                     a"
                     /listShort="yezE"
                     /GFF_Attribute="listLong"
     CDS             735785..736369
                     /gene="yezE"
                     /locus_tag="BSU_06860"
                     /old_locus_tag="BSU06860"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (TetR
                     family)"
                     /protein_id="YP_054572.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06860"
                     /db_xref="EnsemblGenomes-Tr:CAE01448"
                     /db_xref="GOA:Q7WY76"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG14194"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY76"
                     /translation="MGRNKEFDTALVLHRAIEVFGEYGYEGTSLQDLLSHLGIARQSL
                     YDTYGTKRDLFLSAVKSYLEGKNAAVMERLEAPGSVKEAIRDIFQEGVNALRDPERAK
                     ACYIINSAIEQIPHDPELARYFERQSKQLEDAFYHGLLRAKDQGELNGEDTDISALAR
                     YLNQSRLSLTFIAKVTADMDRLQDHVDVSLSVLD*"
     gene            735785..736369
                     /gene="yezE"
                     /locus_tag="BSU_06860"
                     /old_locus_tag="BSU06860"
     downshifts      736350
                     /Source="Nicolas_upshifts"
                     /id="D341"
                     /incds=0
                     /nref=26
                     /ntot=216
                     /MaxReadThrough="2.43615"
                     /MaxDrop="3.31193"
                     /score="17.7046271"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U527"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     CDS             736448..736891
                     /gene="yesE"
                     /locus_tag="BSU_06870"
                     /old_locus_tag="BSU06870"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388568.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06870"
                     /db_xref="EnsemblGenomes-Tr:CAB12506"
                     /db_xref="InterPro:IPR009959"
                     /db_xref="InterPro:IPR032710"
                     /db_xref="PDB:1S5A"
                     /db_xref="SubtiList:BG12844"
                     /db_xref="UniProtKB/Swiss-Prot:O31511"
                     /translation="MLMNEFEKACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAP
                     EGSPKRIEGKAAIYDYIKDYPKQIHLSSFTAPTVYRSADSNTVIAEFQCDGHVIETGL
                     PYRQSYISVIETRDGRIVRYRDYWNPLVVKEAFGGSFLQTEESGK*"
     gene            736448..736891
                     /gene="yesE"
                     /locus_tag="BSU_06870"
                     /old_locus_tag="BSU06870"
     CDS             736888..737748
                     /gene="yesF"
                     /locus_tag="BSU_06880"
                     /old_locus_tag="BSU06880"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 21494745; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388569.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06880"
                     /db_xref="EnsemblGenomes-Tr:CAB12507"
                     /db_xref="GOA:O31512"
                     /db_xref="InterPro:IPR001509"
                     /db_xref="InterPro:IPR008030"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11808"
                     /db_xref="UniProtKB/Swiss-Prot:O31512"
                     /translation="MMKQNPILITGGTGTVGSRIASRLIKLGYRVRIASRKKGALADA
                     EYVYFNWKYASSFTPALEQVKQIYLVAPVGVFDPAPYVLPFLKEAKRLGAKRVVMQSA
                     SVVSENGPVFGALHQAVREFPEWTVLRPSYFMQNFINVQHRMSIQTEGRITTASGEGK
                     LGFIDADDIAETAVRALIDDVPHQTHHILTGPEALSYAEAAEIIGAAAGRRVEHVSIS
                     RSELQHKMEAGGLPADYAHFMAKLDEAISHGAEHRVTDTVKRVTGKEPRSLSEFAAAH
                     AAYWTSFWTE*"
     gene            736888..737748
                     /gene="yesF"
                     /locus_tag="BSU_06880"
                     /old_locus_tag="BSU06880"
     promotor_-35    737810..737815
                     /Source="Nicolas_upshift_promotors"
                     /id="U528"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1097
                     /SigmaFactorBS="ccgaaggtcttcttattgaaaaagctaagtcgtgttttaGTC
                     ATAatcatgcctcctgccTCATACCTATTAAGGTCATtgtttttgagaaaggaggagc
                     c"
                     /listShort="cotJA, cotJB, cotJC, S246, yesJ, yesK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    737831..737849
                     /Source="Nicolas_upshift_promotors"
                     /id="U528"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1097
                     /SigmaFactorBS="ccgaaggtcttcttattgaaaaagctaagtcgtgttttaGTC
                     ATAatcatgcctcctgccTCATACCTATTAAGGTCATtgtttttgagaaaggaggagc
                     c"
                     /listShort="cotJA, cotJB, cotJC, S246, yesJ, yesK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        737831
                     /Source="Nicolas_upshifts"
                     /id="U528"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1097
                     /SigmaFactorBS="ccgaaggtcttcttattgaaaaagctaagtcgtgttttaGTC
                     ATAatcatgcctcctgccTCATACCTATTAAGGTCATtgtttttgagaaaggaggagc
                     c"
                     /listShort="cotJA, cotJB, cotJC, S246, yesJ, yesK"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(737853..737867)
                     /Source="Nicolas_upshift_promotors"
                     /id="U529"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=707
                     /SigmaFactorBS="ggcgtatatgatttgacaggcgtaaacggctgcatatccTTC
                     ATtccggctCCTCCTTTCTCAAAAacaatgaccttaataggtatgaggcaggaggcat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(737858)
                     /Source="Nicolas_upshifts"
                     /id="U529"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=707
                     /SigmaFactorBS="ggcgtatatgatttgacaggcgtaaacggctgcatatccTTC
                     ATtccggctCCTCCTTTCTCAAAAacaatgaccttaataggtatgaggcaggaggcat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(737875..737879)
                     /Source="Nicolas_upshift_promotors"
                     /id="U529"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=707
                     /SigmaFactorBS="ggcgtatatgatttgacaggcgtaaacggctgcatatccTTC
                     ATtccggctCCTCCTTTCTCAAAAacaatgaccttaataggtatgaggcaggaggcat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             737875..738123
                     /gene="cotJA"
                     /locus_tag="BSU_06890"
                     /old_locus_tag="BSU06890"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9364920"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9364920; Product type cp:
                     cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the inner spore coat"
                     /protein_id="NP_388570.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06890"
                     /db_xref="EnsemblGenomes-Tr:CAB12508"
                     /db_xref="InterPro:IPR020256"
                     /db_xref="SubtiList:BG11799"
                     /db_xref="UniProtKB/Swiss-Prot:Q45536"
                     /translation="MKDMQPFTPVKSYTPFHSRFDPCPPIGKKYYRTPPNLYMTFQPE
                     HMEQFSPMEALRKGTLWKDLYDFYENPYRGGDAHGKKG*"
     gene            737875..738123
                     /gene="cotJA"
                     /locus_tag="BSU_06890"
                     /old_locus_tag="BSU06890"
     CDS             738107..738370
                     /gene="cotJB"
                     /locus_tag="BSU_06900"
                     /old_locus_tag="BSU06900"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:9364920"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9364920; Product type cp:
                     cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the inner spore coat"
                     /protein_id="NP_388571.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06900"
                     /db_xref="EnsemblGenomes-Tr:CAB12509"
                     /db_xref="InterPro:IPR016571"
                     /db_xref="InterPro:IPR024207"
                     /db_xref="SubtiList:BG11800"
                     /db_xref="UniProtKB/Swiss-Prot:Q45537"
                     /translation="MAKKVDAEYYRQLEQIQAADFVLVELSLYLNTHPHDEDALKQFN
                     QYSGYSRHLKRQFESSYGPLLQFGNSPAGKDWDWGKGPWPWQV*"
     gene            738107..738370
                     /gene="cotJB"
                     /locus_tag="BSU_06900"
                     /old_locus_tag="BSU06900"
     CDS             738385..738954
                     /gene="cotJC"
                     /locus_tag="BSU_06910"
                     /old_locus_tag="BSU06910"
                     /EC_number="1.11.1.6"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7768848, 9364920"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7768848, 9364920; Product
                     type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="enzyme component of the inner spore coat"
                     /protein_id="NP_388572.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06910"
                     /db_xref="EnsemblGenomes-Tr:CAB12510"
                     /db_xref="InterPro:IPR007760"
                     /db_xref="InterPro:IPR009078"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="SubtiList:BG11801"
                     /db_xref="UniProtKB/Swiss-Prot:Q45538"
                     /translation="MWVYEKKLQYPVKVSTCNPTLAKYLIEQYGGADGELAAALRYLN
                     QRYTIPDKVIGLLTDIGTEEFAHLEMIATMVYKLTKDATPEQLREAGLGDHYVNHDSA
                     LFYHNAAGVPFTASYIQAKGDPIADLYEDIAAEEKARATYQWLIDISDDPDLNDSLRF
                     LREREIVHSMRFREAVEILKEERDKKKIF*"
     gene            738385..738954
                     /gene="cotJC"
                     /locus_tag="BSU_06910"
                     /old_locus_tag="BSU06910"
     S_feature       738955..739033
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_756987_757065"
                     /HighExp="S4, S5, S3, S7, S6, B36, LoTm, BT, T5.0H, S8"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S246"
     promotor_-35    739006..739011
                     /Source="Nicolas_upshift_promotors"
                     /id="U530"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.518481518481518"
                     /psig="0.999000999001"
                     /xcortree=3085
                     /SigmaFactorBS="tcatacacccttttacatacagagaaaatggTCTGTTtttgc
                     agtttggtcTGCATTATAATCAAGGTGTGtgtgcaagcttactttttgattgggaggc
                     c"
                     /listShort="yesJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    739026..739045
                     /Source="Nicolas_upshift_promotors"
                     /id="U530"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.518481518481518"
                     /psig="0.999000999001"
                     /xcortree=3085
                     /SigmaFactorBS="tcatacacccttttacatacagagaaaatggTCTGTTtttgc
                     agtttggtcTGCATTATAATCAAGGTGTGtgtgcaagcttactttttgattgggaggc
                     c"
                     /listShort="yesJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        739035
                     /Source="Nicolas_upshifts"
                     /id="U530"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.518481518481518"
                     /psig="0.999000999001"
                     /xcortree=3085
                     /SigmaFactorBS="tcatacacccttttacatacagagaaaatggTCTGTTtttgc
                     agtttggtcTGCATTATAATCAAGGTGTGtgtgcaagcttactttttgattgggaggc
                     c"
                     /listShort="yesJ"
                     /GFF_Attribute="listLong"
     CDS             739079..739621
                     /gene="yesJ"
                     /locus_tag="BSU_06920"
                     /old_locus_tag="BSU06920"
                     /EC_number="2.3.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_388573.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06920"
                     /db_xref="EnsemblGenomes-Tr:CAB12511"
                     /db_xref="GOA:O31513"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG11809"
                     /db_xref="UniProtKB/Swiss-Prot:O31513"
                     /translation="MTAFKIENETIADGFYACPAVYEDAESITGLLVRTAEWLRDRGS
                     NQWSGLLKGQDIHDITGSIEKGHVFVFKKDEELAAVVMLLPAPSEWDRTLWGDDGHEE
                     SIYLHRLAVSRRFAGQGLGARVLQWAETGIHFPEKTRIRLDCVADSDALHSFYRRMGY
                     EFMGADASGYHLFEKEITAE*"
     gene            739079..739621
                     /gene="yesJ"
                     /locus_tag="BSU_06920"
                     /old_locus_tag="BSU06920"
     downshifts      739588
                     /Source="Nicolas_upshifts"
                     /id="D342"
                     /incds=0
                     /nref=104
                     /ntot=251
                     /MaxReadThrough="3.04389"
                     /MaxDrop="4.5316"
                     /score="8.56782582"
                     /energy="-5.8"
                     /TU="U528"
                     /idTUdmin="U530"
                     /TUdmin=2
                     /isTUend="TRUE"
     CDS             739644..739946
                     /gene="yesK"
                     /locus_tag="BSU_06930"
                     /old_locus_tag="BSU06930"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane component"
                     /protein_id="NP_388574.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06930"
                     /db_xref="EnsemblGenomes-Tr:CAB12512"
                     /db_xref="GOA:O31514"
                     /db_xref="InterPro:IPR025434"
                     /db_xref="SubtiList:BG12845"
                     /db_xref="UniProtKB/Swiss-Prot:O31514"
                     /translation="MSFSKREAGDVWSILFVTGIVTACLFAGVSVLMRMRFPDKSRPE
                     WMLAGLIVLGVFAIWYSLVYVRGWEGAALGMLGFNVIFGAIAGYLIDKAIRRYRKR*"
     gene            739644..739946
                     /gene="yesK"
                     /locus_tag="BSU_06930"
                     /old_locus_tag="BSU06930"
     promotor_-35    739989..739997
                     /Source="Nicolas_upshift_promotors"
                     /id="U531"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.895104895104895"
                     /psig="0.895104895104895"
                     /xcortree=362
                     /SigmaFactorBS="gccgtctctcaacaggtcgaaattttcacagaccgGCAGGAA
                     TTttctttcgaaAGGAGAAATACATATTACTttaaaatgaaagcgttttccaaagcag
                     g"
                     /listShort="yesL, yesM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    740008..740026
                     /Source="Nicolas_upshift_promotors"
                     /id="U531"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.895104895104895"
                     /psig="0.895104895104895"
                     /xcortree=362
                     /SigmaFactorBS="gccgtctctcaacaggtcgaaattttcacagaccgGCAGGAA
                     TTttctttcgaaAGGAGAAATACATATTACTttaaaatgaaagcgttttccaaagcag
                     g"
                     /listShort="yesL, yesM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        740014
                     /Source="Nicolas_upshifts"
                     /id="U531"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.895104895104895"
                     /psig="0.895104895104895"
                     /xcortree=362
                     /SigmaFactorBS="gccgtctctcaacaggtcgaaattttcacagaccgGCAGGAA
                     TTttctttcgaaAGGAGAAATACATATTACTttaaaatgaaagcgttttccaaagcag
                     g"
                     /listShort="yesL, yesM"
                     /GFF_Attribute="listLong"
     CDS             740061..740690
                     /gene="yesL"
                     /locus_tag="BSU_06940"
                     /old_locus_tag="BSU06940"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     25441682; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease or sensor of a three
                     componentsystem for pectin and rhamnogalacturonan
                     transport anddegradation"
                     /protein_id="NP_388575.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06940"
                     /db_xref="EnsemblGenomes-Tr:CAB12513"
                     /db_xref="GOA:O31515"
                     /db_xref="InterPro:IPR006938"
                     /db_xref="SubtiList:BG12846"
                     /db_xref="UniProtKB/Swiss-Prot:O31515"
                     /translation="MLMIHSVANGLNHFCTWVMRLAYLNVLWILFSLAGLVVFGLMPA
                     TAAMFTVAREWAKGNTDAPVFSVFFRTFKKEWRASQILGLIVVTAALFLFADMRIAAQ
                     MDQPVLVNVFVSISLIFAFVVLYVFPVFSHFDVKIREVLSISFFIAFSRPAVTLLMAA
                     GAVGVLCLVLFHVTFLLFFSGSLLSLILTKLSFKAFRSMDQRQEKEKAA*"
     gene            740061..740690
                     /gene="yesL"
                     /locus_tag="BSU_06940"
                     /old_locus_tag="BSU06940"
     CDS             740687..742420
                     /gene="yesM"
                     /locus_tag="BSU_06950"
                     /old_locus_tag="BSU06950"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 23436677, 25441682"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 23436677,
                     25441682; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YesN]"
                     /protein_id="NP_388576.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06950"
                     /db_xref="EnsemblGenomes-Tr:CAB12514"
                     /db_xref="GOA:O31516"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR010559"
                     /db_xref="InterPro:IPR033479"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12847"
                     /db_xref="UniProtKB/Swiss-Prot:O31516"
                     /translation="MKKRVAGWYRRMKIKDKLFVFLSLIMAVSFLFVYSGVQYAFHVY
                     DEQIYRKSSEVLRMSSERIEDELKKIEDVSYEIITDEQIQRILSMQNRDDTYDQYQMK
                     QELWDQLAGYASDEKYIDSIHVIDARGSEYSAGSSSSDLLQQEQEEVFKRAKAKSGRN
                     LWMTLGGSDPVLISARQIRSYHQLSLNGLGMVLIQVNVKQMIRDVPKDWGDSVGDIMI
                     ADQGGNLVYTAHASAHVPEAAKETLKHPGYDLIKKNGKRYFISYLQSSYQNWSYYNVI
                     PFDQMFAKISFMKTVIGTCFLLFFCVVLLFGRKIANSITEPIEQLVTAMKSVQHSGIE
                     AGVSLSLPEHTQDEAGMLNRHFTVMMKRINELMEENVEKQLIIKETELKALQAQINPH
                     FLYNTLESINWLAKANQQKQISKMVESLGFLLRNSIHMKKDIVTIQEEADIVRHYMTI
                     QRFRFEERLKFTLDIDDEVKHCLIPKLTLQPLAENAIQYALEPFTRPCAIRIQAKKAK
                     GCVCITVEDNGPGMDGRILESTGGRGIGLWNIRERISLTFGEPYGLRIHSEHEKGTRI
                     VITIPCRNEVV*"
     gene            740687..742420
                     /gene="yesM"
                     /locus_tag="BSU_06950"
                     /old_locus_tag="BSU06950"
     CDS             742420..743526
                     /gene="yesN"
                     /locus_tag="BSU_06960"
                     /old_locus_tag="BSU06960"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:25441682"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 25441682; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YesM]"
                     /protein_id="NP_388577.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06960"
                     /db_xref="EnsemblGenomes-Tr:CAB12515"
                     /db_xref="GOA:O31517"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="SubtiList:BG12848"
                     /db_xref="UniProtKB/Swiss-Prot:O31517"
                     /translation="MYKILLADDERIILDGMAGIIEWESLGASLIGKAQNGHEAYEKI
                     VHKQPHIVITDVKMPGMDGLELIKKVSAVSPSVQFIVLSGFGEFEYAKEAMKYGVKHY
                     LLKPCNEQQIISSLEEIIAELKRQDVHKKKTAHLKHELDHIRSFAADQYLEGLIAGVA
                     QLSPPPSLAGKKIRLLILKGEQSIDAAAREALGSALTAVCSSGEWTVLAVEENAAEKV
                     AEVFADRKMAISQAGELRHAGQLFRDTAEASGDLHGSAVISKMIRLIADELGNPNLSL
                     KWAAKDMLFMNPDYLGKLFKQETGEKFSQYVTRVRLEHAMKQMKIRRDVSVSEIAEEI
                     GFGDNPKYFSLVFKKYTGLTPSEFRRKQGGASAG*"
     gene            742420..743526
                     /gene="yesN"
                     /locus_tag="BSU_06960"
                     /old_locus_tag="BSU06960"
     downshifts      743480
                     /Source="Nicolas_upshifts"
                     /id="D343"
                     /incds=0
                     /nref=4
                     /ntot=43
                     /MaxReadThrough="0.271749999999999"
                     /MaxDrop="3.41261"
                     /score="3.12085441"
                     /energy="-10.3"
                     /TU="NA"
                     /idTUdmin="U531"
                     /TUdmin=1408
                     /isTUend="FALSE"
     promotor_-35    743565..743568
                     /Source="Nicolas_upshift_promotors"
                     /id="U532"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig="0.992007992007992"
                     /xcortree=356
                     /SigmaFactorBS="tctctgtttttttgactttcgccactgttttttgaGTGTttc
                     gccctatccgaACGCTTTAAAATAAAATGTAagcacttacattaaaggggggattggt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    743583..743602
                     /Source="Nicolas_upshift_promotors"
                     /id="U532"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig="0.992007992007992"
                     /xcortree=356
                     /SigmaFactorBS="tctctgtttttttgactttcgccactgttttttgaGTGTttc
                     gccctatccgaACGCTTTAAAATAAAATGTAagcacttacattaaaggggggattggt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        743590
                     /Source="Nicolas_upshifts"
                     /id="U532"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig="0.992007992007992"
                     /xcortree=356
                     /SigmaFactorBS="tctctgtttttttgactttcgccactgttttttgaGTGTttc
                     gccctatccgaACGCTTTAAAATAAAATGTAagcacttacattaaaggggggattggt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             743630..744913
                     /gene="yesO"
                     /locus_tag="BSU_06970"
                     /old_locus_tag="BSU06970"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 25658435"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     25658435; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="pectin degradation byproducts (rhamnose
                     oligosaccharides)-binding lipoprotein"
                     /protein_id="NP_388578.2"
                     /db_xref="EnsemblGenomes-Gn:BSU06970"
                     /db_xref="EnsemblGenomes-Tr:CAB12516"
                     /db_xref="PDB:4R6K"
                     /db_xref="SubtiList:BG12849"
                     /db_xref="UniProtKB/Swiss-Prot:O31518"
                     /translation="MKKICYVLLSLVCVFLFSGCSAGEEASGKKEDVTLRIAWWGGQP
                     RHDYTTKVIELYEKKNPHVHIEAEFANWDDYWKKLAPMSAAGQLPDVIQMDTAYLAQY
                     GKKNQLEDLTPYTKDGTIDVSSIDENMLSGGKIDNKLYGFTLGVNVLSVIANEDLLKK
                     AGVSINQENWTWEDYEKLAYDLQEKAGVYGSNGMHPPDIFFPYYLRTKGERFYKEDGT
                     GLAYQDDQLFVDYFERQLRLVKAKTSPTPDESAQIKGMEDDFIVKGKSAITWNYSNQY
                     LGFARLTDSPLSLYLPPEQMQEKALTLKPSMLFSIPKSSEHKKEAAKFINFFVNNEEA
                     NQLIKGERGVPVSDKVADAIKPKLNEEETNIVEYVETASKNISKADPPEPVGSAEVIK
                     LLKDTSDQILYQKVSPEKAAKTFRKKANEILERNN*"
     gene            743630..744913
                     /gene="yesO"
                     /locus_tag="BSU_06970"
                     /old_locus_tag="BSU06970"
     CDS             744910..745839
                     /gene="rhgP"
                     /locus_tag="BSU_06980"
                     /old_locus_tag="BSU06980"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 17449691"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     17449691; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan permease"
                     /protein_id="NP_388579.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06980"
                     /db_xref="EnsemblGenomes-Tr:CAB12517"
                     /db_xref="GOA:O31519"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG12850"
                     /db_xref="UniProtKB/Swiss-Prot:O31519"
                     /translation="MTGNGADAMKKSRSIRKDNLAGYAFISPFIIGFLCFTVIPMGAS
                     LFLSFTSYDLFTAPKWIGLDNFKEMFTGDEKYWQSLKVTFTYVLAGVPLRLGFALFIA
                     VILNNAAKGTAIYRTLFYLPSIIGGSVAVAIMWRNIFGNDGVINALLFFVGIDQKILW
                     YQNPTSALWTLILLSVWQFGSSMLIFLAGLKNIPSSYLEAASVDGANRVQRFFKITLP
                     ILTPIIFFNLVMQTISAFMTFTPAYIISKGEGGPLDGTLLYSLYLFQRAFNYFQMGYA
                     SAMAWVMLVIVGLITLILFKTSSYWVHYESKEE*"
     gene            744910..745839
                     /gene="rhgP"
                     /locus_tag="BSU_06980"
                     /old_locus_tag="BSU06980"
     CDS             745843..746733
                     /gene="rhgQ"
                     /locus_tag="BSU_06990"
                     /old_locus_tag="BSU06990"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 17449691"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     17449691; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan permease"
                     /protein_id="NP_388580.1"
                     /db_xref="EnsemblGenomes-Gn:BSU06990"
                     /db_xref="EnsemblGenomes-Tr:CAB12518"
                     /db_xref="GOA:O31520"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG12851"
                     /db_xref="UniProtKB/Swiss-Prot:O31520"
                     /translation="MEPVNQPVREAPVFERKKAGRVSPKRILFHVFTATLAVLLLYPV
                     IWLFVSSFKESASIFTTSHSLIPDPFILSNYAEGWKGIAGQPFLTFIKNSAIIVGLST
                     IGAVMSSAVIAYGFARIPFKGKKFWFACMMGTLMLPHEVLMIPQYIMFAKLDWLNSFK
                     PIVVPQFFGHAFFIFLMIQFIRTIPEELDEAARIDGCGRFACFWRIILPLIAPALATS
                     AIFSFYWKWEELIQPLLYLNKPELYPVSLALKLFLDTESASNWGAMFAMSAVSLLPVI
                     LVFFLFQKYIVQGISTTGLK*"
     gene            745843..746733
                     /gene="rhgQ"
                     /locus_tag="BSU_06990"
                     /old_locus_tag="BSU06990"
     CDS             746749..747783
                     /gene="rhgH"
                     /locus_tag="BSU_07000"
                     /old_locus_tag="BSU07000"
                     /EC_number="3.2.1.172"
                     /function="16.6: Maintain"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 16781735, 17449691;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan hydrolase"
                     /protein_id="NP_388581.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07000"
                     /db_xref="EnsemblGenomes-Tr:CAB12519"
                     /db_xref="GOA:O31521"
                     /db_xref="InterPro:IPR008928"
                     /db_xref="InterPro:IPR010905"
                     /db_xref="SubtiList:BG12852"
                     /db_xref="UniProtKB/Swiss-Prot:O31521"
                     /translation="MAQLIFDEEKVTSVIDRIVKRTFQMDFAWDWPGGVAFYGVAEAY
                     EATENEEYINLLKTWVDEQLEDGLPPLSINGVSIGHTLLFLHKVTGDDVYLETAAEMA
                     EYVLHKAPRFGEGILQHTVNAAEYVFPEQAWADTLMMAGLFMLRIGRVMEREDYFEDG
                     LRQFHGHEDVLQDPVTNLYYHAWDNKAQNHLSGIYWGRANGWAALTMAKALPLIEVTH
                     PSFMIIDGSLRDQLSALVRLQDESGLWHTILDDPDSYLEVSASAGIASALMSSGKLYT
                     KYVQKSLAAILDAVEEDGRVSRVSAGTAVMKNAEGYKQVPYKRIQGWGQGLALTFLAD
                     VLKTKKRLYQ*"
     gene            746749..747783
                     /gene="rhgH"
                     /locus_tag="BSU_07000"
                     /old_locus_tag="BSU07000"
     CDS             747806..750091
                     /gene="rhgR"
                     /locus_tag="BSU_07010"
                     /old_locus_tag="BSU07010"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 19651770"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     19651770; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (AraC/XylS family)"
                     /protein_id="NP_388582.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07010"
                     /db_xref="EnsemblGenomes-Tr:CAB12520"
                     /db_xref="GOA:O31522"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="SubtiList:BG12853"
                     /db_xref="UniProtKB/Swiss-Prot:O31522"
                     /translation="MKKQPQQKERVSRWKGTYFKRNFVFILLIACIPGLLTGGAIYFL
                     SIDKVEKELQRSHETQVAREVSRMDEKLGVLELALTQMAYDSSLMNGLAERDLEKDFT
                     FSYQLTKKLFLLRDQQPLIEQASIFLNSPRPLVLSPEYSALTEQEALRKYRSLLASDH
                     SIYWKRSGNQAMLIQLIPGAAEKPFGAIMLAVDPKEMESILQSLSPYPDGSALLLDQN
                     REVLFHEGEKDFEKTLLHEIKKQPAENGHFQMEWKGKVYSVSFGEMNRMHQQWTFVSA
                     APLSAITAPMVFLSKVIIVMLVICIGLAVCMTWYASKKIYRPIQHLLGLFTGGEKKTW
                     QASGQDEFKWIEKRWQDLSLESRKLQQQLLRQTPHMKKSFLQHLLQSDFYYDNEESLR
                     FRMEEAGWNIGGNVFHVLDLQVTGLRCEKSIFREGDEQLAVFTLTNIAEELAAKRVFQ
                     LSILDIGRLSVTVLVMKTNSSDLKAYITELARQFGDVTGLCLTSTLSSKTERVTEIPS
                     LFQDVKCGKSRRKFANRDQVIDLQADFPRDEQFAPYYPFELEKQIVQTIRLERKQEAK
                     ELIDGCMKELSEKAAIDRHVHSALIQLFSRIQEDILHSGLNPSELFQHRNPFLDISEL
                     REPNEAAAWLMDVVVTPYLSKLEGRKNRQQKQLAERVIAMIHEQYMADISLESCADAL
                     GMNSYTLSKAFKQVTGINFIDYVTQIRIEKAKELLVNTNKKIHDVSEEVGYRHNYFNR
                     IFKKQVGMPPGVFRQMYQETP*"
     gene            747806..750091
                     /gene="rhgR"
                     /locus_tag="BSU_07010"
                     /old_locus_tag="BSU07010"
     CDS             750105..750803
                     /gene="rhgT"
                     /locus_tag="BSU_07020"
                     /old_locus_tag="BSU07020"
                     /EC_number="3.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 17957779"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     17957779; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan acetylesterase"
                     /protein_id="NP_388583.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07020"
                     /db_xref="EnsemblGenomes-Tr:CAB12521"
                     /db_xref="GOA:O31523"
                     /db_xref="InterPro:IPR013830"
                     /db_xref="InterPro:IPR036514"
                     /db_xref="SubtiList:BG12854"
                     /db_xref="UniProtKB/Swiss-Prot:O31523"
                     /translation="MMKKPIQVFLAGDSTVSDCPPHEAPMAGWGQVFGQLFSEGVLVR
                     NHAKGGASTNSFVEEGRLQAIAEHITQGDYLLIQFGHNDQKPRGTKPYSTFQQFLTLF
                     ADTAREKGAHPVFVTSVQRRRFDENGRIEHTLGEYPDAMKALAKELDVPVIDLLAKTK
                     VLYEAYGPEESKRLFVWFQPNEHPNYPDGIEDNTHFSEKGAMEVAKLVAEGIEELGLP
                     LKDHLVSREGKEHV*"
     gene            750105..750803
                     /gene="rhgT"
                     /locus_tag="BSU_07020"
                     /old_locus_tag="BSU07020"
     CDS             750796..751458
                     /gene="yesU"
                     /locus_tag="BSU_07030"
                     /old_locus_tag="BSU07030"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16781735, 17449691;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_388584.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07030"
                     /db_xref="EnsemblGenomes-Tr:CAB12522"
                     /db_xref="InterPro:IPR013320"
                     /db_xref="InterPro:IPR015305"
                     /db_xref="PDB:1OQ1"
                     /db_xref="SubtiList:BG12855"
                     /db_xref="UniProtKB/Swiss-Prot:O31524"
                     /translation="MYKEGACLYRNPLRSKSDVKDWRMEGGGQISFDDHSLHLSHVQD
                     EAHFVFWCPETFPDGIIVTWDFSPIEQPGLCMLFFAAAGIRGEDLFDPSLRKRTGTYP
                     EYHSGDINALHLSYFRRKYAEERAFRTCNLRKSRGFHLAAMGADPLPSPDDADSPYRM
                     KLIKDKGYVHFSINGLPILEWMDDGSTYGPVLTKGKIGFRQMAPMKAVYRDFAVHQAV
                     RR*"
     gene            750796..751458
                     /gene="yesU"
                     /locus_tag="BSU_07030"
                     /old_locus_tag="BSU07030"
     CDS             751455..752081
                     /gene="yesV"
                     /locus_tag="BSU_07040"
                     /old_locus_tag="BSU07040"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     17449691; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane component"
                     /protein_id="NP_388585.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07040"
                     /db_xref="EnsemblGenomes-Tr:CAB12523"
                     /db_xref="InterPro:IPR006938"
                     /db_xref="SubtiList:BG12856"
                     /db_xref="UniProtKB/Swiss-Prot:O31525"
                     /translation="MKTTVTDALYAGCEAVVKIAWLNGLWLLFTLLGGVLFGWAPSTA
                     AMCAVIRKWLMGQKDVPIFSLFLDTYKKEFLKVNAIGLAFSALLLILSANYHYFSAST
                     NWLSFAVTSCTLLAGLLYIIALMYVFPLYVHYQLPLRKYIPQALLFGAMRPLTTGCML
                     IGCGFVLYLLYTLPGLIPFYGPCLFGLVLMFFALRGFQKTEAQHHQAG*"
     gene            751455..752081
                     /gene="yesV"
                     /locus_tag="BSU_07040"
                     /old_locus_tag="BSU07040"
     CDS             752202..754064
                     /gene="rhgW"
                     /locus_tag="BSU_07050"
                     /old_locus_tag="BSU07050"
                     /EC_number="4.2.2.23"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 19193638"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     19193638; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan endolyase"
                     /protein_id="NP_388586.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07050"
                     /db_xref="EnsemblGenomes-Tr:CAB12524"
                     /db_xref="GOA:O31526"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR034641"
                     /db_xref="PDB:2Z8R"
                     /db_xref="PDB:2Z8S"
                     /db_xref="PDB:2ZUX"
                     /db_xref="SubtiList:BG12857"
                     /db_xref="UniProtKB/Swiss-Prot:O31526"
                     /translation="MRRSCLMIRRRKRMFTAVTLLVLLVMGTSVCPVKAEGAARQMEA
                     LNRGLVAVKTDGGIFVSWRFLGTENASVLFNVYRDGQKLNAAPVKTTNYVDKNGSAGS
                     TYTVRAVVNGTEQPASEKASVWAQPYHSVPLDKPAGGTTPKGESYTYSANDASVGDVD
                     GDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRINLGKNIRAGAHYTQF
                     MVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTG
                     KELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAY
                     NFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKGM
                     YSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDV
                     GRGMAADIDPRYPGQEVWANGSLYSAKGVKIGSGVPSSTNFGIWWDGDLLREQLDSNR
                     IDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYT
                     TTIPTEHRLYTLMHDPVYRLGIAWQNIAYNQPPHTSFFLGDGMAEQPKPNMYTP*"
     gene            752202..754064
                     /gene="rhgW"
                     /locus_tag="BSU_07050"
                     /old_locus_tag="BSU07050"
     promotor_no_box 752242..752342
                     /Source="Nicolas_upshift_promotors"
                     /id="U533"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.59040959040959"
                     /psig="0.000999000999001"
                     /xcortree=1487
                     /SigmaFactorBS="tgtttaccgctgttacgttgctggtcttgttggtgatgggaa
                     cctctgtatgtcctgtgaaagctgaaggggcagcgcggcagatggaagcgctgaaccg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        752302
                     /Source="Nicolas_upshifts"
                     /id="U533"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.59040959040959"
                     /psig="0.000999000999001"
                     /xcortree=1487
                     /SigmaFactorBS="tgtttaccgctgttacgttgctggtcttgttggtgatgggaa
                     cctctgtatgtcctgtgaaagctgaaggggcagcgcggcagatggaagcgctgaaccg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     upshifts        complement(752840)
                     /Source="Nicolas_upshifts"
                     /id="U534"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1380
                     /SigmaFactorBS="cattgccacttctgctttTCCGTCACCAtcaaggtcatacAC
                     CATAAACTGGGTGTAGTGcgcgcccgctctgatgtttttgccgagattgatccgccat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(752841..752860)
                     /Source="Nicolas_upshift_promotors"
                     /id="U534"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1380
                     /SigmaFactorBS="cattgccacttctgctttTCCGTCACCAtcaaggtcatacAC
                     CATAAACTGGGTGTAGTGcgcgcccgctctgatgtttttgccgagattgatccgccat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(752873..752882)
                     /Source="Nicolas_upshift_promotors"
                     /id="U534"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1380
                     /SigmaFactorBS="cattgccacttctgctttTCCGTCACCAtcaaggtcatacAC
                     CATAAACTGGGTGTAGTGcgcgcccgctctgatgtttttgccgagattgatccgccat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             754110..755948
                     /gene="rhgX"
                     /locus_tag="BSU_07060"
                     /old_locus_tag="BSU07060"
                     /EC_number="4.2.2.24"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691, 19193638"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691,
                     19193638; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan exolyase"
                     /protein_id="NP_388587.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07060"
                     /db_xref="EnsemblGenomes-Tr:CAB12525"
                     /db_xref="GOA:O31527"
                     /db_xref="InterPro:IPR013517"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR034641"
                     /db_xref="PDB:2ZUY"
                     /db_xref="SubtiList:BG12858"
                     /db_xref="UniProtKB/Swiss-Prot:O31527"
                     /translation="MKPKKRQMEYLTRGLIAVQTEQGVFVSWRFLGTDHETTAFHLYR
                     DGKRITRDPIAESTNFLDQNGTADSVYQVAAVNKGREEKLSKKARVWQENVLEVPLAK
                     PEGGVTPDGKPYTYSANDASVGDIDGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAY
                     KLDGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQ
                     ADFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGT
                     AYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSV
                     ADVDGDGKDEIIYGAMAVDHDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDAT
                     KPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPSYKGSLVWGIDPPGNDGMSYGLF
                     TSKGEKISDKAPSSANFAIWWDGDLVRELLDHDWDGTIGRPKIEKWDAENGCLKTIFQ
                     PAGVLSNNGTKGNPVLQANLFGDWREEVIWRTEDSSALRIYTTTHLTRHCFYTLMHDP
                     VYRLGIAWQNTAYNQPPHTSFYLGTGMKKPPKPALYIAGSKAEAPL*"
     gene            754110..755948
                     /gene="rhgX"
                     /locus_tag="BSU_07060"
                     /old_locus_tag="BSU07060"
     CDS             756106..756759
                     /gene="yesY"
                     /locus_tag="BSU_07070"
                     /old_locus_tag="BSU07070"
                     /EC_number="3.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17449691"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17449691;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan acetylesterase"
                     /protein_id="NP_388588.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07070"
                     /db_xref="EnsemblGenomes-Tr:CAB12526"
                     /db_xref="GOA:O31528"
                     /db_xref="InterPro:IPR013830"
                     /db_xref="InterPro:IPR036514"
                     /db_xref="SubtiList:BG12859"
                     /db_xref="UniProtKB/Swiss-Prot:O31528"
                     /translation="MANHIYLAGDSTVQTYGDSTNQGGWGQFLGSHLPEHIQVINRAI
                     GGRSSKTFVEEGRLQAILDVIEPDDWLFVQMGHNDASKNKPERYTEPYTTYKQYLKQY
                     IAGAREKGAHPLLITPVARFHYENGVFLNDFPDYCIAMKQTAAEENVQLIDLMEKSLA
                     FFTEKGEEKVYTYFMISEGINDYTHFTKKGANEMAKLVAKGIKELGLPLTESIIKER*
                     "
     gene            756106..756759
                     /gene="yesY"
                     /locus_tag="BSU_07070"
                     /old_locus_tag="BSU07070"
     CDS             756767..758758
                     /gene="rhgZ"
                     /locus_tag="BSU_07080"
                     /old_locus_tag="BSU07080"
                     /EC_number="3.2.1.67"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16781735, 17056685, 17449691, 17485082"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16781735, 17056685,
                     17449691, 17485082; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galacturonidase"
                     /protein_id="NP_388589.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07080"
                     /db_xref="EnsemblGenomes-Tr:CAB12527"
                     /db_xref="GOA:O31529"
                     /db_xref="InterPro:IPR003476"
                     /db_xref="InterPro:IPR013529"
                     /db_xref="InterPro:IPR013738"
                     /db_xref="InterPro:IPR013739"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG12860"
                     /db_xref="UniProtKB/Swiss-Prot:O31529"
                     /translation="MRKLYHGACYYPELWDEETIQQDIDIMREVGVNVVRIGEFAWSV
                     MEPEEGKIDVGFFKEIIARLYDSGIETIMCTPTPTPPIWFSHGRPERMHANEKREIMG
                     HGSRQHACTNNPYFRKKAAIITTAIAKELGRLPGLIGWQLDNEFKCHVAECMCETCLR
                     LWHDWLKNRYGVIERLNEAWGTDVWSETYQTFEQVPQPGPAPFLHHASLRTMYQLFSM
                     EMIASFADEQAKIIRCYSDAPITHNGSVMFSVDNERMFQNLDFASYDTYASQENASAF
                     LLNCDLWRNLKQGRPFWILETSPSYAASLESSAYPHADGYLQAEAVSSYALGSQGFCY
                     WLWRQQRSGSEISHGSVLSAWGEPTIGYQNVLAVERARKEIEPIILSTEPVQAEAAMT
                     YSDRAKAFIKTEPHRGLRHRSLVTHFYERILNTGIHRDLIPEGAPLDGYRLLFTPFVP
                     YLSSEFIKKASAFAEAGGIWITGPLTGGRTCEHTIHTDCGLGELEKTSGIKTLFTFPM
                     NENVNTGKAFGITAPLGLWSAVFDTESGNTLGTVEAGPGAGHAFLTERNYGEGKIVML
                     GSLPSGKEGDAMLEALVRHYAEEAVISSRSDVTPGTIVAPRIGENGLVWIVVNMDGKG
                     GSVTLPESGTDLLTHRLEKAGRLAVGPHEYRVIQFDNHS*"
     gene            756767..758758
                     /gene="rhgZ"
                     /locus_tag="BSU_07080"
                     /old_locus_tag="BSU07080"
     CDS             758802..761375
                     /gene="yetA"
                     /locus_tag="BSU_07090"
                     /old_locus_tag="BSU07090"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_388590.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07090"
                     /db_xref="EnsemblGenomes-Tr:CAB12528"
                     /db_xref="SubtiList:BG12861"
                     /db_xref="UniProtKB/Swiss-Prot:O31530"
                     /translation="MKKIKWLSGQPKVTSGVTWGMPWKKGELKKGDRLALMNENAETR
                     YVQSEPSAYWPDGSIKWTKHAAVFGGQENQSFTVHKREVPQPTESLSILETEHDIQVD
                     TGALVCTIHKTGSDFIQSLQINGKPIAAGGRLVAIRETRKESAAKMVLLHERSVSFIK
                     RAAIEQSGPVKAVVKIEGVHVLHKTYEEWLPFVIRLTFYAGLSEIGLVHTQLIDRSGK
                     LEFVKGLGIEFDLFLEGEPYNRHFRFAGEKGMYKEPAQLFGTRKFNERYPLYEKQING
                     EMLSPDEEHKEWFAHGTQNAVWDDVKIVQDSSDHYSLSKRTGKDYAWVGMLHGSRAKG
                     LCYAGGKNGGVALGLRYFFEKYPSALEITGLAGSRPKMTIWLWPPDGEAMDLRHYTGN
                     THVASAYEGFDEMRSDPTGIANTNEISLACFSHMPSDEVLNALADKWQAPPLIVCEPD
                     VYYESKALGVWSIIDTSHPLKKELEEQLDAAFLFYKKEVEQRRWYGFWHYGDVMHTYD
                     PIRHMWRYDLGGYAWQNNELVPTLWLWQAFFRSGREDIFRMAEAMTRHTSETDSFHLG
                     EYAGLGSRHNVVHWGCGCKEARISMAGLHKFYYYLTGDDRTGDLLTEVKDADYALVKT
                     DPMRAFYEKGKHPTHARTGPDWAAFCSNWLAEWERTENSEYLKKIETGINCLKRLPLR
                     LLSGPTFEYDPATSMLHHMGDGIAGGYHMIIAFGAPQVWMELAELLDDWEWEDMLSEF
                     GEFYTLSDEEKRKKSGGALHDGHFHWPMFAAGMTAYAARKKQDPHLAAKAWNLLLEDK
                     LSHTPLPIKPERIETWTQLEELPWVTTNTVSQWCLNVIAALELIGDSLPAKKETSGKK
                     G*"
     gene            758802..761375
                     /gene="yetA"
                     /locus_tag="BSU_07090"
                     /old_locus_tag="BSU07090"
     promotor_-10    complement(760124..760142)
                     /Source="Nicolas_upshift_promotors"
                     /id="U535"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.916083916083916"
                     /psig="0.916083916083916"
                     /xcortree=961
                     /SigmaFactorBS="tgtcaatgatgctccataccccgagtgcttttgaTTCGTAat
                     agacgtccggctcGCATACAATGAGCGGGGGCgcctgccatttgtcagccagcgcatt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(760137)
                     /Source="Nicolas_upshifts"
                     /id="U535"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.916083916083916"
                     /psig="0.916083916083916"
                     /xcortree=961
                     /SigmaFactorBS="tgtcaatgatgctccataccccgagtgcttttgaTTCGTAat
                     agacgtccggctcGCATACAATGAGCGGGGGCgcctgccatttgtcagccagcgcatt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(760158..760163)
                     /Source="Nicolas_upshift_promotors"
                     /id="U535"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.916083916083916"
                     /psig="0.916083916083916"
                     /xcortree=961
                     /SigmaFactorBS="tgtcaatgatgctccataccccgagtgcttttgaTTCGTAat
                     agacgtccggctcGCATACAATGAGCGGGGGCgcctgccatttgtcagccagcgcatt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             761497..763005
                     /gene="lplA"
                     /locus_tag="BSU_07100"
                     /old_locus_tag="BSU07100"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7921237"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7921237; Product type lp:
                     lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein transporter binding protein for
                     alpha-galacturonides"
                     /protein_id="NP_388591.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07100"
                     /db_xref="EnsemblGenomes-Tr:CAB12529"
                     /db_xref="GOA:P37966"
                     /db_xref="InterPro:IPR006059"
                     /db_xref="SubtiList:BG10434"
                     /db_xref="UniProtKB/Swiss-Prot:P37966"
                     /translation="MKIRMRKKWMALPLAAMMIAGCSHSETSNSASGSKDTIKIMAPL
                     LSPESPSDKSPSLKALEKYTGKEIKVTWVPDSSYNDKFNIVMASGEMPHAIVIKDKSA
                     GFIKSVKAGAFWELSPYLKDYKNLSQADEKILKNSSVNGEVYGIYRTRDLIRACMIIR
                     TDWLKNVGLDMPETLDDFYEVLKAFKEKDPDGNGKDDTYGMVVPKWMGLGNGSPWDVL
                     QIWFGAPNRYGVENGKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAKWNDPV
                     VKGKAGVIVDTGSRASQIQSAMEEADESNKDIIDIVGSLEGPNGKRTFPTSGYSGMIT
                     IPKSSVKTEKELKEVLSFLDKMNDKEAQILTNNGVKGRNYELKDGVFTSLEKNNKSLL
                     YEHEGLAQFSMSIPKSEYYIEDQKTKLFQHRKDIITEGEKIAVFNPAESLVSDVYTQK
                     GAQLDNIILDARTQFIIGEIDEKGFDDAVELWKKSGGNELMKDLNKLYQSSK*"
     gene            761497..763005
                     /gene="lplA"
                     /locus_tag="BSU_07100"
                     /old_locus_tag="BSU07100"
     CDS             763060..764016
                     /gene="lplB"
                     /locus_tag="BSU_07110"
                     /old_locus_tag="BSU07110"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 10869078, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease) for
                     alpha-galacturonides"
                     /protein_id="NP_388592.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07110"
                     /db_xref="EnsemblGenomes-Tr:CAB12530"
                     /db_xref="GOA:P39128"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10435"
                     /db_xref="UniProtKB/Swiss-Prot:P39128"
                     /translation="METVPKKRDAPVLTAGKGISWMAALKRDKWLYLLLIPGLLYFLI
                     FKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLL
                     FAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKL
                     IMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGA
                     GRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYM
                     MGITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF*"
     gene            763060..764016
                     /gene="lplB"
                     /locus_tag="BSU_07110"
                     /old_locus_tag="BSU07110"
     downshifts      complement(763334)
                     /Source="Nicolas_upshifts"
                     /id="D344"
                     /incds=1
                     /nref=1
                     /ntot=8
                     /MaxReadThrough="1.59638"
                     /MaxDrop="4.19822"
                     /score="13.9744253"
                     /energy="-20.3"
                     /TU="NA"
                     /idTUdmin="U538"
                     /TUdmin=2068
                     /isTUend="FALSE"
     promotor_no_box complement(763360..763460)
                     /Source="Nicolas_upshift_promotors"
                     /id="U536"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.544455544455544"
                     /psig="0.002997002997003"
                     /xcortree=1476
                     /SigmaFactorBS="ggtacgtaaataaaggtttggatacatcttttatacacggcc
                     tttcttacctcattcaaaagcagagccaaaatgagaggcgcgggaaaggcaaacaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(763400)
                     /Source="Nicolas_upshifts"
                     /id="U536"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.544455544455544"
                     /psig="0.002997002997003"
                     /xcortree=1476
                     /SigmaFactorBS="ggtacgtaaataaaggtttggatacatcttttatacacggcc
                     tttcttacctcattcaaaagcagagccaaaatgagaggcgcgggaaaggcaaacaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             764030..764917
                     /gene="lplC"
                     /locus_tag="BSU_07120"
                     /old_locus_tag="BSU07120"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 10869078, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease) for
                     alpha-galacturonides"
                     /protein_id="NP_388593.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07120"
                     /db_xref="EnsemblGenomes-Tr:CAB12531"
                     /db_xref="GOA:P39129"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10857"
                     /db_xref="UniProtKB/Swiss-Prot:P39129"
                     /translation="MAEIHTMHNTKAGRVFDVCNILFLGGVGAITILPFLYIIAGSFA
                     TEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAY
                     PLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLI
                     IIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHA
                     LLYINDSAKWPLQMVLRQVTILSDLTATNGDTMQNAVPPEQGIKLAVIVIATLPILAV
                     YPFLQKHFAKGMLIGSVKG*"
     gene            764030..764917
                     /gene="lplC"
                     /locus_tag="BSU_07120"
                     /old_locus_tag="BSU07120"
     promotor_-35    764664..764669
                     /Source="Nicolas_upshift_promotors"
                     /id="U537"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1069
                     /SigmaFactorBS="ttgcgacctttgcgctgttttatgcggtcgggatttGGAATG
                     atttcttccacgctcTCTTATATATCAATGACAGtgcaaaatggccgctgcaaatggt
                     g"
                     /listShort="lplD, S248, yetF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    764685..764703
                     /Source="Nicolas_upshift_promotors"
                     /id="U537"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1069
                     /SigmaFactorBS="ttgcgacctttgcgctgttttatgcggtcgggatttGGAATG
                     atttcttccacgctcTCTTATATATCAATGACAGtgcaaaatggccgctgcaaatggt
                     g"
                     /listShort="lplD, S248, yetF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        764688
                     /Source="Nicolas_upshifts"
                     /id="U537"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1069
                     /SigmaFactorBS="ttgcgacctttgcgctgttttatgcggtcgggatttGGAATG
                     atttcttccacgctcTCTTATATATCAATGACAGtgcaaaatggccgctgcaaatggt
                     g"
                     /listShort="lplD, S248, yetF"
                     /GFF_Attribute="listLong"
     CDS             764926..766266
                     /gene="lplD"
                     /locus_tag="BSU_07130"
                     /old_locus_tag="BSU07130"
                     /EC_number="3.2.1.67"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:23416295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23416295; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galacturonidase"
                     /protein_id="NP_388594.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07130"
                     /db_xref="EnsemblGenomes-Tr:CAB12532"
                     /db_xref="GOA:P39130"
                     /db_xref="InterPro:IPR001088"
                     /db_xref="InterPro:IPR015955"
                     /db_xref="InterPro:IPR019802"
                     /db_xref="InterPro:IPR022616"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:3FEF"
                     /db_xref="SubtiList:BG10858"
                     /db_xref="UniProtKB/Swiss-Prot:P39130"
                     /translation="MFHISTLDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYD
                     LDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLP
                     ERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL
                     YKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKAS
                     YRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRH
                     LAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVN
                     IIAALLGLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEML
                     AARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDMLQCIMQS*"
     gene            764926..766266
                     /gene="lplD"
                     /locus_tag="BSU_07130"
                     /old_locus_tag="BSU07130"
     S_feature       complement(765360..767051)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_783392_785083_c"
                     /HighExp="H2O2, dia15, Paraq, Lbexp, LBGexp, Salt, LPhT,
                     GM 25, G150, dia0"
                     /AntisenseName="yetF"
                     /AntisenseCor="-0.25986434675098202"
                     /AntisenseRegPval="-4.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.993"
                     /label="S247"
     S_feature       766267..766348
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_784299_784380"
                     /HighExp="S5, S4, S6, S3, S7, S8, BT, LoTm, B36, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.991"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S248"
     CDS             766349..767044
                     /gene="yetF"
                     /locus_tag="BSU_07140"
                     /old_locus_tag="BSU07140"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein"
                     /protein_id="NP_388595.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07140"
                     /db_xref="EnsemblGenomes-Tr:CAB12533"
                     /db_xref="GOA:O31533"
                     /db_xref="InterPro:IPR007353"
                     /db_xref="InterPro:IPR023090"
                     /db_xref="PDB:3C6F"
                     /db_xref="SubtiList:BG12862"
                     /db_xref="UniProtKB/Swiss-Prot:O31533"
                     /translation="MGNYLSVAVELVCGLGILFIILKLLGKTQFSQITPFDFISALIL
                     GELVGNAVYDHEIKIKEIIFASLLWGVLIYIIEFITQKMKSSRKFLEGEPNIVIRKGE
                     LQYKVMKKNKIDINQLQSLLRQAGSFSIQEVEYAILETNGMVSVLPKSDFDKPTNKDL
                     QIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQELKKKNIDKTEDVLFAEWHKNK
                     PLYTVTYEQSRST*"
     gene            766349..767044
                     /gene="yetF"
                     /locus_tag="BSU_07140"
                     /old_locus_tag="BSU07140"
     downshifts      767042
                     /Source="Nicolas_upshifts"
                     /id="D345"
                     /incds=0
                     /nref=2
                     /ntot=24
                     /MaxReadThrough="1.32891"
                     /MaxDrop="3.45213"
                     /score="-0.176154378"
                     /energy="-7.1"
                     /TU="NA"
                     /idTUdmin="U537"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(767081..767407)
                     /gene="hmoA"
                     /locus_tag="BSU_07150"
                     /old_locus_tag="BSU07150"
                     /EC_number="1.14.14.18"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:20180905, 21764939, 21873409"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20180905, 21764939,
                     21873409; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="heme-degrading monooxygenase"
                     /protein_id="NP_388596.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07150"
                     /db_xref="EnsemblGenomes-Tr:CAB12534"
                     /db_xref="GOA:O31534"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="SubtiList:BG12863"
                     /db_xref="UniProtKB/Swiss-Prot:O31534"
                     /translation="MFVQLRKMTVKEGFADKVIERFSAEGIIEKQEGLIDVTVLEKNV
                     RRGDEEVVVMIRWESEDHWKQWEKSDAHIAGHKANKGKPKPDYLISTEVSMYHVRAVK
                     QGTYNQ*"
     gene            complement(767081..767407)
                     /gene="hmoA"
                     /locus_tag="BSU_07150"
                     /old_locus_tag="BSU07150"
     downshifts      complement(767096)
                     /Source="Nicolas_upshifts"
                     /id="D346"
                     /incds=0
                     /nref=194
                     /ntot=248
                     /MaxReadThrough="4.01189"
                     /MaxDrop="6.29183"
                     /score="9.23596913"
                     /energy="-9.1"
                     /TU="U538"
                     /idTUdmin="U539"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      767394
                     /Source="Nicolas_upshifts"
                     /id="D347"
                     /incds=1
                     /nref=1
                     /ntot=45
                     /MaxReadThrough="1.96802"
                     /MaxDrop="3.46057"
                     /score="-7.34187128"
                     /energy="-5"
                     /TU="NA"
                     /idTUdmin="U537"
                     /TUdmin=352
                     /isTUend="FALSE"
     promotor_-10    complement(767430..767449)
                     /Source="Nicolas_upshift_promotors"
                     /id="U538"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.604395604395604"
                     /psig="0.999000999001"
                     /xcortree=2117
                     /SigmaFactorBS="tgttgcgcacggcggttcgattccgccctgcgctttcTTTGA
                     CATtgagaatgaatttcATTTACAATTATTCATATGTgagaatgattggagtgagaca
                     a"
                     /listShort="yetG, S247"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(767448)
                     /Source="Nicolas_upshifts"
                     /id="U538"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.604395604395604"
                     /psig="0.999000999001"
                     /xcortree=2117
                     /SigmaFactorBS="tgttgcgcacggcggttcgattccgccctgcgctttcTTTGA
                     CATtgagaatgaatttcATTTACAATTATTCATATGTgagaatgattggagtgagaca
                     a"
                     /listShort="yetG, S247"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(767464..767471)
                     /Source="Nicolas_upshift_promotors"
                     /id="U538"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.604395604395604"
                     /psig="0.999000999001"
                     /xcortree=2117
                     /SigmaFactorBS="tgttgcgcacggcggttcgattccgccctgcgctttcTTTGA
                     CATtgagaatgaatttcATTTACAATTATTCATATGTgagaatgattggagtgagaca
                     a"
                     /listShort="yetG, S247"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(767511..767873)
                     /gene="yetH"
                     /locus_tag="BSU_07160"
                     /old_locus_tag="BSU07160"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lyase/dioxygenase"
                     /protein_id="NP_388597.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07160"
                     /db_xref="EnsemblGenomes-Tr:CAB12535"
                     /db_xref="InterPro:IPR004360"
                     /db_xref="InterPro:IPR029068"
                     /db_xref="SubtiList:BG12864"
                     /db_xref="UniProtKB/Swiss-Prot:O31535"
                     /translation="MIKQIGTVAVYVEDQQKAKQFWTEKVGFDIAADHPMGPEASWLE
                     VAPKGAETRLVIYPKAMMKGSEQMKASIVFECEDIFGTYEKMKTNGVEFLGEPNQMEW
                     GTFVQFKDEDGNVFLLKE*"
     gene            complement(767511..767873)
                     /gene="yetH"
                     /locus_tag="BSU_07160"
                     /old_locus_tag="BSU07160"
     promotor_-10    complement(767896..767915)
                     /Source="Nicolas_upshift_promotors"
                     /id="U539"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.431568431568432"
                     /psig="0.993006993006993"
                     /xcortree=2376
                     /SigmaFactorBS="ttttaataatcagccggtttcccggctgatttttttATGTTA
                     CttcggccgtaaaCAGGTTATAGTATTATTATCttttcaacttggaggtttccctatg
                     a"
                     /listShort="yetH, yetG"
                     /listLong="S247"
                     /label="promotor_-10"
     upshifts        complement(767910)
                     /Source="Nicolas_upshifts"
                     /id="U539"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.431568431568432"
                     /psig="0.993006993006993"
                     /xcortree=2376
                     /SigmaFactorBS="ttttaataatcagccggtttcccggctgatttttttATGTTA
                     CttcggccgtaaaCAGGTTATAGTATTATTATCttttcaacttggaggtttccctatg
                     a"
                     /listShort="yetH, yetG"
                     /listLong="S247"
     promotor_-35    complement(767928..767934)
                     /Source="Nicolas_upshift_promotors"
                     /id="U539"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.431568431568432"
                     /psig="0.993006993006993"
                     /xcortree=2376
                     /SigmaFactorBS="ttttaataatcagccggtttcccggctgatttttttATGTTA
                     CttcggccgtaaaCAGGTTATAGTATTATTATCttttcaacttggaggtttccctatg
                     a"
                     /listShort="yetH, yetG"
                     /listLong="S247"
                     /label="promotor_-35"
     S_feature       complement(767944..768504)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_785976_786536_c"
                     /HighExp="S8, S6, S7, S5, BT, B36, G/S, B60, Pyr, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99999400000000005"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S249"
     downshifts      complement(767976)
                     /Source="Nicolas_upshifts"
                     /id="D348"
                     /incds=0
                     /nref=38
                     /ntot=47
                     /MaxReadThrough="0.395850000000001"
                     /MaxDrop="8.2984"
                     /score="45.4672528"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U540"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(768487..768506)
                     /Source="Nicolas_upshift_promotors"
                     /id="U540"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1291
                     /SigmaFactorBS="ctctctgagagcattccagcttcatatccttaggcGAATGCA
                     CCAataagagtccgccCGCATAAACTGCAATGTACAgtttacaatgagaaaggacgtt
                     a"
                     /listShort="S249"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(768504)
                     /Source="Nicolas_upshifts"
                     /id="U540"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1291
                     /SigmaFactorBS="ctctctgagagcattccagcttcatatccttaggcGAATGCA
                     CCAataagagtccgccCGCATAAACTGCAATGTACAgtttacaatgagaaaggacgtt
                     a"
                     /listShort="S249"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(768520..768529)
                     /Source="Nicolas_upshift_promotors"
                     /id="U540"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1291
                     /SigmaFactorBS="ctctctgagagcattccagcttcatatccttaggcGAATGCA
                     CCAataagagtccgccCGCATAAACTGCAATGTACAgtttacaatgagaaaggacgtt
                     a"
                     /listShort="S249"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    768592..768599
                     /Source="Nicolas_upshift_promotors"
                     /id="U541"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=2437
                     /SigmaFactorBS="ggaatgctctcagagagcagaatcatttgatttttctctagt
                     ctTATTCACAattccgatttatCATTTTATAATGAAAGTGCTtctattacgaaaaagg
                     a"
                     /listShort="yetI, yetI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        768608
                     /Source="Nicolas_upshifts"
                     /id="U541"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=2437
                     /SigmaFactorBS="ggaatgctctcagagagcagaatcatttgatttttctctagt
                     ctTATTCACAattccgatttatCATTTTATAATGAAAGTGCTtctattacgaaaaagg
                     a"
                     /listShort="yetI, yetI"
                     /GFF_Attribute="listLong"
     promotor_-10    768612..768631
                     /Source="Nicolas_upshift_promotors"
                     /id="U541"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.999000999001"
                     /xcortree=2437
                     /SigmaFactorBS="ggaatgctctcagagagcagaatcatttgatttttctctagt
                     ctTATTCACAattccgatttatCATTTTATAATGAAAGTGCTtctattacgaaaaagg
                     a"
                     /listShort="yetI, yetI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             768657..769238
                     /gene="yetI"
                     /locus_tag="BSU_07170"
                     /old_locus_tag="BSU07170"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 11157946;
                     Product type r: regulator"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative paralog of RsbR; N-terminal part of
                     YetI"
                     /db_xref="SubtiList:BG12865"
                     /translation="MNIDQLLYQYIIDNTADITEKWFSLRCQLKGELYSASHLSEETK
                     TLLTEQHTFTNITIASAFLEDQTDFQENMTKWAQNVAKNRVEQDVQVHEVVEAISNSR
                     ISFWDAVATFIKENQEIVTNEDADRWNRIVNQSFDKLIIEFSEQYQKFMLMRLTSQQE
                     LISELGCPVISIADGIGILPLIGSIDTKRHRSF*"
     gene            768657..769238
                     /gene="yetI"
                     /locus_tag="BSU_07170"
                     /old_locus_tag="BSU07170"
                     /pseudo
     CDS             769232..769528
                     /gene="yetI"
                     /locus_tag="BSU_07180"
                     /old_locus_tag="BSU07180"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 11157946;
                     Product type r: regulator"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative paralog of RsbR; C-terminal part of
                     YetI"
                     /db_xref="GOA:O31537"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="PSEUDO:CAB12537.2"
                     /db_xref="SubtiList:BG12873"
                     /db_xref="UniProtKB/Swiss-Prot:O31537"
                     /translation="MLETVPVRCVERKITSLVVDLSGVPIVDTMVAQQLYNLSKTLFL
                     LGVKAVFSGIRPDVAQTSIQLGLDFSEYETYGTLKQALENMGVRCIVEELEENK*"
     gene            769232..769528
                     /gene="yetI"
                     /locus_tag="BSU_07180"
                     /old_locus_tag="BSU07180"
                     /pseudo
     downshifts      769520
                     /Source="Nicolas_upshifts"
                     /id="D349"
                     /incds=0
                     /nref=114
                     /ntot=215
                     /MaxReadThrough="1.06939"
                     /MaxDrop="4.8053"
                     /score="16.356572"
                     /energy="-21.2"
                     /TU="NA"
                     /idTUdmin="U541"
                     /TUdmin="-8"
                     /isTUend="TRUE"
     promotor_-35    769599..769606
                     /Source="Nicolas_upshift_promotors"
                     /id="U542"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig=1
                     /xcortree=1743
                     /SigmaFactorBS="atatgcctttttgatttgaacagaaatcaccATTGATTTatc
                     gaaaaaaacaTAATATTATAATTCTTATAAgaatactgtgaattaaaacctattcaac
                     a"
                     /listShort="yezD, yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    769620..769639
                     /Source="Nicolas_upshift_promotors"
                     /id="U542"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig=1
                     /xcortree=1743
                     /SigmaFactorBS="atatgcctttttgatttgaacagaaatcaccATTGATTTatc
                     gaaaaaaacaTAATATTATAATTCTTATAAgaatactgtgaattaaaacctattcaac
                     a"
                     /listShort="yezD, yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        769628
                     /Source="Nicolas_upshifts"
                     /id="U542"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.603396603396603"
                     /psig=1
                     /xcortree=1743
                     /SigmaFactorBS="atatgcctttttgatttgaacagaaatcaccATTGATTTatc
                     gaaaaaaacaTAATATTATAATTCTTATAAgaatactgtgaattaaaacctattcaac
                     a"
                     /listShort="yezD, yetJ, yetK"
                     /GFF_Attribute="listLong"
     CDS             769683..769850
                     /gene="yezD"
                     /locus_tag="BSU_07190"
                     /old_locus_tag="BSU07190"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388600.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07190"
                     /db_xref="EnsemblGenomes-Tr:CAB12538"
                     /db_xref="InterPro:IPR018743"
                     /db_xref="SubtiList:BG12875"
                     /db_xref="UniProtKB/Swiss-Prot:O31538"
                     /translation="MVSKSTIDPEVIEKIISSLETLDFGTVQITVHDSQITQIEKIEK
                     HRFSLKRKESK*"
     gene            769683..769850
                     /gene="yezD"
                     /locus_tag="BSU_07190"
                     /old_locus_tag="BSU07190"
     promotor_-35    769892..769899
                     /Source="Nicolas_upshift_promotors"
                     /id="U543"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2401
                     /SigmaFactorBS="taaagggcgtttgttttcattaaattctccttaaaaCATATA
                     CAtatttcatccaatttTTATATAATAGACCTTTAAGatcattttttaggaggatttt
                     t"
                     /listShort="yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    769915..769934
                     /Source="Nicolas_upshift_promotors"
                     /id="U543"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2401
                     /SigmaFactorBS="taaagggcgtttgttttcattaaattctccttaaaaCATATA
                     CAtatttcatccaatttTTATATAATAGACCTTTAAGatcattttttaggaggatttt
                     t"
                     /listShort="yetJ, yetK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        769916
                     /Source="Nicolas_upshifts"
                     /id="U543"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig=1
                     /xcortree=2401
                     /SigmaFactorBS="taaagggcgtttgttttcattaaattctccttaaaaCATATA
                     CAtatttcatccaatttTTATATAATAGACCTTTAAGatcattttttaggaggatttt
                     t"
                     /listShort="yetJ, yetK"
                     /GFF_Attribute="listLong"
     CDS             769960..770604
                     /gene="calJ"
                     /locus_tag="BSU_07200"
                     /old_locus_tag="BSU07200"
                     /function="7.4: Cations and iron carrying compounds"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 16086852, 24904158"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     16086852, 24904158; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="pH-sensitive calcium-leak permease (di-aspartyl
                     pH sensor)"
                     /protein_id="NP_388601.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07200"
                     /db_xref="EnsemblGenomes-Tr:CAB12539"
                     /db_xref="GOA:O31539"
                     /db_xref="InterPro:IPR006214"
                     /db_xref="PDB:4PGR"
                     /db_xref="PDB:4PGS"
                     /db_xref="PDB:4PGU"
                     /db_xref="PDB:4PGV"
                     /db_xref="PDB:4PGW"
                     /db_xref="PDB:4TKQ"
                     /db_xref="SubtiList:BG12866"
                     /db_xref="UniProtKB/Swiss-Prot:O31539"
                     /translation="MQATVHESKQSIMQRILTVFVFTLLIATVGLFIGQFVPVALMLP
                     LSILEVAMIILAFWMRRRKAVGYAFVYTFAFVSGITLFPIVSHYASIAGAYVVLEAFG
                     STFVIFAVLGTIGAKMKKDLSFLWSFLLVAVLALAVVGIFNIFSPLNSAAMMAYSVIG
                     TIVFSLYILYDLNQIKHRHITEDLIPVMALSLYLDFINLFINLLRFFGILSSDD*"
     gene            769960..770604
                     /gene="calJ"
                     /locus_tag="BSU_07200"
                     /old_locus_tag="BSU07200"
     downshifts      770540
                     /Source="Nicolas_upshifts"
                     /id="D350"
                     /incds=1
                     /nref=1
                     /ntot=11
                     /MaxReadThrough="6.69003"
                     /MaxDrop="2.5446"
                     /score="-1.46791202"
                     /energy="-10.7"
                     /TU="U542,U543"
                     /idTUdmin="U541"
                     /TUdmin=1012
                     /isTUend="FALSE"
     downshifts      770584
                     /Source="Nicolas_upshifts"
                     /id="D351"
                     /incds=0
                     /nref=7
                     /ntot=127
                     /MaxReadThrough="5.33515"
                     /MaxDrop="3.71552"
                     /score="-1.46791202"
                     /energy="-10.7"
                     /TU="U542,U543"
                     /idTUdmin="U542"
                     /TUdmin="-990"
                     /isTUend="FALSE"
     CDS             770604..771596
                     /gene="yetK"
                     /locus_tag="BSU_07210"
                     /old_locus_tag="BSU07210"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388602.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07210"
                     /db_xref="EnsemblGenomes-Tr:CAB12540"
                     /db_xref="GOA:O31540"
                     /db_xref="InterPro:IPR000620"
                     /db_xref="SubtiList:BG12867"
                     /db_xref="UniProtKB/Swiss-Prot:O31540"
                     /translation="MKKRLSLDRRFLPYIKKAGGVLVKKQMGAYVSLAAAMAIVGSSV
                     VVGKLMVERIPVFLSSGLRFLIASVVLLMLLFCIEKGFPALTKKDVFVLLVQSFTGVF
                     LFSICLLYGVQYTTGTESGILTSTTPMLIGILSFFLLREKIEKKTLIGILLAVCGVMA
                     INLFGAGSQDGTPHALFGNMLIIAAVIGEALFTLMAKLLSPHISALAISTFVSLFGFL
                     FFLPFALFEASSFDYSVPTVLDWSYVLYYALFVTVLAFYLWYSGVTKVPAGVSGIFTS
                     VLPVSAVILSGVILKEPFEFVHFIGIACVIGGIFVTVIKKKQPDAYPAAEEKTL*"
     gene            770604..771596
                     /gene="yetK"
                     /locus_tag="BSU_07210"
                     /old_locus_tag="BSU07210"
     downshifts      771530
                     /Source="Nicolas_upshifts"
                     /id="D352"
                     /incds=1
                     /nref=1
                     /ntot=18
                     /MaxReadThrough="4.14475"
                     /MaxDrop="2.73453"
                     /score="21.8095329"
                     /energy="-10.7"
                     /TU="U542,U543"
                     /idTUdmin="U542"
                     /TUdmin="-44"
                     /isTUend="FALSE"
     downshifts      771574
                     /Source="Nicolas_upshifts"
                     /id="D353"
                     /incds=0
                     /nref=94
                     /ntot=214
                     /MaxReadThrough="0.120229999999999"
                     /MaxDrop="4.45909"
                     /score="21.8095329"
                     /energy="-10.7"
                     /TU="NA"
                     /idTUdmin="U542"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(771620..772123)
                     /gene="flvL"
                     /locus_tag="BSU_07220"
                     /old_locus_tag="BSU07220"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:19329649, 25209494"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19329649, 25209494;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (FlvL-flavonoids)"
                     /protein_id="NP_388603.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07220"
                     /db_xref="EnsemblGenomes-Tr:CAB12541"
                     /db_xref="GOA:O31541"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12868"
                     /db_xref="UniProtKB/Swiss-Prot:O31541"
                     /translation="MELKHLPKYKHITEHAETYANIDAGSLELFLSLFDISKKMNHVM
                     EHYFAGRGLSEGKFKILMLLFDAKDHRLSPTELAKRSNVTKATITGLLDGLARDGFVS
                     RRHHTEDKRKISIELTTEGKARLEQFLPGHFSKISAVMENYSDEEKDMFVKMLGDLFE
                     RLSVFKD*"
     gene            complement(771620..772123)
                     /gene="flvL"
                     /locus_tag="BSU_07220"
                     /old_locus_tag="BSU07220"
     promotor_-10    complement(772148..772167)
                     /Source="Nicolas_upshift_promotors"
                     /id="U544"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.952047952047952"
                     /xcortree=3006
                     /SigmaFactorBS="aagaaaagctgtcaatcatctccaagccAAGTTGCGttatgg
                     ttttcccTCCTTTATAATCGTGTCACAacgaatgtacgggagctaattgcgatggaat
                     t"
                     /listShort="yetL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(772156)
                     /Source="Nicolas_upshifts"
                     /id="U544"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.952047952047952"
                     /xcortree=3006
                     /SigmaFactorBS="aagaaaagctgtcaatcatctccaagccAAGTTGCGttatgg
                     ttttcccTCCTTTATAATCGTGTCACAacgaatgtacgggagctaattgcgatggaat
                     t"
                     /listShort="yetL"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(772181..772188)
                     /Source="Nicolas_upshift_promotors"
                     /id="U544"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.739260739260739"
                     /psig="0.952047952047952"
                     /xcortree=3006
                     /SigmaFactorBS="aagaaaagctgtcaatcatctccaagccAAGTTGCGttatgg
                     ttttcccTCCTTTATAATCGTGTCACAacgaatgtacgggagctaattgcgatggaat
                     t"
                     /listShort="yetL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             772286..773395
                     /gene="flvM"
                     /locus_tag="BSU_07230"
                     /old_locus_tag="BSU07230"
                     /EC_number="1.14.13.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 25209494; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative flavin-dependent
                     hydroxylase/monooxygenase acting on salicylate
                     derivatives"
                     /protein_id="NP_388604.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07230"
                     /db_xref="EnsemblGenomes-Tr:CAB12542"
                     /db_xref="GOA:O06489"
                     /db_xref="InterPro:IPR002938"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG12869"
                     /db_xref="UniProtKB/Swiss-Prot:O06489"
                     /translation="MKHMLIAGGGIGGLSAAISLRKAGFSVTLCEAASENRKTGAGIL
                     QPQNALAVLKELGVFEDCCKHGFQTEWFKTFDEQGNLLFQVSESFLDDSLPGRNNILR
                     KTLNDILMKHAEAVGVDIKWGKKVVAYEETAESVTALCEDGEKMQADILAGFDGIHSV
                     VRDKMLQKETEKEHLGMGAWRFYIELPDYTFEDATFMYRSGDTQIGVVPLAQHAGYVF
                     VLQPCTSDYWDEEDTRFDRVKEILSGFRGLDFVTKHMSKQHPVIFNKLEQVAVQEPWH
                     KGRVIIGGDAAHAGAPTLAQGAAMAIEDAIVLAEELQNHADHETALQAYYKRRAPRAL
                     KVQNLSSEIVRRRLKGEPGAEELIGECYAVLREGY*"
     gene            772286..773395
                     /gene="flvM"
                     /locus_tag="BSU_07230"
                     /old_locus_tag="BSU07230"
     downshifts      773378
                     /Source="Nicolas_upshifts"
                     /id="D354"
                     /incds=0
                     /nref=7
                     /ntot=67
                     /MaxReadThrough="0.0953400000000002"
                     /MaxDrop="5.1482"
                     /score="13.261567"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U542"
                     /TUdmin=1804
                     /isTUend="FALSE"
     CDS             complement(773430..774500)
                     /gene="yetN"
                     /locus_tag="BSU_07240"
                     /old_locus_tag="BSU07240"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22333191"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388605.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07240"
                     /db_xref="EnsemblGenomes-Tr:CAB12543"
                     /db_xref="InterPro:IPR025006"
                     /db_xref="InterPro:IPR025012"
                     /db_xref="SubtiList:BG12870"
                     /db_xref="UniProtKB/Swiss-Prot:O06490"
                     /translation="MDFEIRFLSFYVIQVEGKDEQANKQFKHFQTLDTGEFEESELKD
                     FLDGELKKIVKRKADRHPQSEQVPTKIGHFIVEPGHELDSNPNYNMFNRARLAETKED
                     FNELSEQFVRTYLDTSAVRGGVFLVASAVPRKYFDESFVFIMKCDFEPKVARISDASS
                     LIKKVEMAITTKNMKSIQYPYMPEEGMVEEGELKIHQASHARYFEDFLKFVEYGESMP
                     EIMKNQVMNMVQEHVYETFEDNSEELKQFEHDIEIWEASEKREIQERLDTHQVIEASA
                     QIIEHTPEAQLKMKVGETEIKGLLADFGDSIHLAKVNGRYVALIEAETISFEKGSSPV
                     EFYKPEGLHEVIERIRNKTEQD*"
     gene            complement(773430..774500)
                     /gene="yetN"
                     /locus_tag="BSU_07240"
                     /old_locus_tag="BSU07240"
     downshifts      complement(773454)
                     /Source="Nicolas_upshifts"
                     /id="D355"
                     /incds=0
                     /nref=45
                     /ntot=180
                     /MaxReadThrough="0.83729"
                     /MaxDrop="4.28938"
                     /score="0.323038441"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U545"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(774531..774550)
                     /Source="Nicolas_upshift_promotors"
                     /id="U545"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.987012987012987"
                     /xcortree=1835
                     /SigmaFactorBS="atttgactacatttccctttcatggtcatgattattccgttc
                     tccCAATTGACgcatgatcgctgttTTTTCTATACTTGAGAAGCTgtacaatacgcga
                     a"
                     /listShort="yetN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(774557)
                     /Source="Nicolas_upshifts"
                     /id="U545"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.987012987012987"
                     /xcortree=1835
                     /SigmaFactorBS="atttgactacatttccctttcatggtcatgattattccgttc
                     tccCAATTGACgcatgatcgctgttTTTTCTATACTTGAGAAGCTgtacaatacgcga
                     a"
                     /listShort="yetN"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(774565..774572)
                     /Source="Nicolas_upshift_promotors"
                     /id="U545"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.987012987012987"
                     /xcortree=1835
                     /SigmaFactorBS="atttgactacatttccctttcatggtcatgattattccgttc
                     tccCAATTGACgcatgatcgctgttTTTTCTATACTTGAGAAGCTgtacaatacgcga
                     a"
                     /listShort="yetN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    774580..774586
                     /Source="Nicolas_upshift_promotors"
                     /id="U546"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=728
                     /SigmaFactorBS="aaacagcgatcatgcgtcaattgggagaacGGAATAAtcatg
                     accatgaaaGGGAAATGTAGTCAAATAGaaggcatttcatacggaaaggaatggttcg
                     a"
                     /listShort="yetO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    774601..774619
                     /Source="Nicolas_upshift_promotors"
                     /id="U546"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=728
                     /SigmaFactorBS="aaacagcgatcatgcgtcaattgggagaacGGAATAAtcatg
                     accatgaaaGGGAAATGTAGTCAAATAGaaggcatttcatacggaaaggaatggttcg
                     a"
                     /listShort="yetO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        774610
                     /Source="Nicolas_upshifts"
                     /id="U546"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=728
                     /SigmaFactorBS="aaacagcgatcatgcgtcaattgggagaacGGAATAAtcatg
                     accatgaaaGGGAAATGTAGTCAAATAGaaggcatttcatacggaaaggaatggttcg
                     a"
                     /listShort="yetO"
                     /GFF_Attribute="listLong"
     CDS             774650..777835
                     /gene="cypD"
                     /locus_tag="BSU_07250"
                     /old_locus_tag="BSU07250"
                     /EC_number="1.6.2.4"
                     /EC_number="1.14.14.1"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11574077, 2544578,
                     21048857, 26452461; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional P-450/NADPH-P450 reductase 1"
                     /protein_id="NP_388606.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07250"
                     /db_xref="EnsemblGenomes-Tr:CAB12544"
                     /db_xref="GOA:O08394"
                     /db_xref="InterPro:IPR001094"
                     /db_xref="InterPro:IPR001128"
                     /db_xref="InterPro:IPR001433"
                     /db_xref="InterPro:IPR001709"
                     /db_xref="InterPro:IPR003097"
                     /db_xref="InterPro:IPR008254"
                     /db_xref="InterPro:IPR017927"
                     /db_xref="InterPro:IPR017938"
                     /db_xref="InterPro:IPR017972"
                     /db_xref="InterPro:IPR023206"
                     /db_xref="InterPro:IPR029039"
                     /db_xref="InterPro:IPR036396"
                     /db_xref="SubtiList:BG12871"
                     /db_xref="UniProtKB/Swiss-Prot:O08394"
                     /translation="MKETSPIPQPKTFGPLGNLPLIDKDKPTLSLIKLAEEQGPIFQI
                     HTPAGTTIVVSGHELVKEVCDEERFDKSIEGALEKVRAFSGDGLFTSWTHEPNWRKAH
                     NILMPTFSQRAMKDYHEKMVDIAVQLIQKWARLNPNEAVDVPGDMTRLTLDTIGLCGF
                     NYRFNSYYRETPHPFINSMVRALDEAMHQMQRLDVQDKLMVRTKRQFRYDIQTMFSLV
                     DSIIAERRANGDQDEKDLLARMLNVEDPETGEKLDDENIRFQIITFLIAGHETTSGLL
                     SFATYFLLKHPDKLKKAYEEVDRVLTDAAPTYKQVLELTYIRMILNESLRLWPTAPAF
                     SLYPKEDTVIGGKFPITTNDRISVLIPQLHRDRDAWGKDAEEFRPERFEHQDQVPHHA
                     YKPFGNGQRACIGMQFALHEATLVLGMILKYFTLIDHENYELDIKQTLTLKPGDFHIS
                     VQSRHQEAIHADVQAAEKAAPDEQKEKTEAKGASVIGLNNRPLLVLYGSDTGTAEGVA
                     RELADTASLHGVRTKTAPLNDRIGKLPKEGAVVIVTSSYNGKPPSNAGQFVQWLQEIK
                     PGELEGVHYAVFGCGDHNWASTYQYVPRFIDEQLAEKGATRFSARGEGDVSGDFEGQL
                     DEWKKSMWADAIKAFGLELNENADKERSTLSLQFVRGLGESPLARSYEASHASIAENR
                     ELQSADSDRSTRHIEIALPPDVEYQEGDHLGVLPKNSQTNVSRILHRFGLKGTDQVTL
                     SASGRSAGHLPLGRPVSLHDLLSYSVEVQEAATRAQIRELASFTVCPPHRRELEELSA
                     EGVYQEQILKKRISMLDLLEKYEACDMPFERFLELLRPLKPRYYSISSSPRVNPRQAS
                     ITVGVVRGPAWSGRGEYRGVASNDLAERQAGDDVVMFIRTPESRFQLPKDPETPIIMV
                     GPGTGVAPFRGFLQARDVLKREGKTLGEAHLYFGCRNDRDFIYRDELERFEKDGIVTV
                     HTAFSRKEGMPKTYVQHLMADQADTLISILDRGGRLYVCGDGSKMAPDVEAALQKAYQ
                     AVHGTGEQEAQNWLRHLQDTGMYAKDVWAGI*"
     gene            774650..777835
                     /gene="cypD"
                     /locus_tag="BSU_07250"
                     /old_locus_tag="BSU07250"
     downshifts      777822
                     /Source="Nicolas_upshifts"
                     /id="D356"
                     /incds=0
                     /nref=1
                     /ntot=9
                     /MaxReadThrough="2.31156"
                     /MaxDrop="2.91666"
                     /score="9.17315362"
                     /energy="-9.8"
                     /TU="NA"
                     /idTUdmin="U546"
                     /TUdmin=44
                     /isTUend="FALSE"
     promotor_-35    777885..777890
                     /Source="Nicolas_upshift_promotors"
                     /id="U547"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.841158841158841"
                     /psig="0.841158841158841"
                     /xcortree=1029
                     /SigmaFactorBS="agtcctttcgaaaaaatgGTGATCgcgctaaacattgatGCA
                     TACAATAACTTCAGTCcgccggaagggcgggctgtctgcaaaacctatttttcgtttt
                     t"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    777906..777924
                     /Source="Nicolas_upshift_promotors"
                     /id="U547"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.841158841158841"
                     /psig="0.841158841158841"
                     /xcortree=1029
                     /SigmaFactorBS="agtcctttcgaaaaaatgGTGATCgcgctaaacattgatGCA
                     TACAATAACTTCAGTCcgccggaagggcgggctgtctgcaaaacctatttttcgtttt
                     t"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        777927
                     /Source="Nicolas_upshifts"
                     /id="U547"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.841158841158841"
                     /psig="0.841158841158841"
                     /xcortree=1029
                     /SigmaFactorBS="agtcctttcgaaaaaatgGTGATCgcgctaaacattgatGCA
                     TACAATAACTTCAGTCcgccggaagggcgggctgtctgcaaaacctatttttcgtttt
                     t"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
     promotor_-35    777955..777958
                     /Source="Nicolas_upshift_promotors"
                     /id="U548"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig=1
                     /xcortree=2603
                     /SigmaFactorBS="acttcagtccgccggaagggcgggctgtctgcaaaacctATT
                     TttcgtttttgctagttTATGTTATTCTTATACTCGGtatctatttcttttttcaaag
                     g"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    777975..777994
                     /Source="Nicolas_upshift_promotors"
                     /id="U548"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig=1
                     /xcortree=2603
                     /SigmaFactorBS="acttcagtccgccggaagggcgggctgtctgcaaaacctATT
                     TttcgtttttgctagttTATGTTATTCTTATACTCGGtatctatttcttttttcaaag
                     g"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       777976..778281
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_796008_796313"
                     /HighExp="H2O2, Paraq, Oxctl, Cold, Heat, LBGexp, G180,
                     G150, HPh, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="1, 0.841"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S250"
     upshifts        777976
                     /Source="Nicolas_upshifts"
                     /id="U548"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.803196803196803"
                     /psig=1
                     /xcortree=2603
                     /SigmaFactorBS="acttcagtccgccggaagggcgggctgtctgcaaaacctATT
                     TttcgtttttgctagttTATGTTATTCTTATACTCGGtatctatttcttttttcaaag
                     g"
                     /listShort="S250, ltaSA"
                     /GFF_Attribute="listLong"
     CDS             778282..780201
                     /gene="ltaSA"
                     /locus_tag="BSU_07260"
                     /old_locus_tag="BSU07260"
                     /function="16.1: Circulate"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11544192, 15187182,
                     17434969, 17483484, 21255105, 27002131; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="exported glycerol phosphate lipoteichoic acid
                     synthetase and anion-binding protein"
                     /protein_id="NP_388607.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07260"
                     /db_xref="EnsemblGenomes-Tr:CAB12545"
                     /db_xref="GOA:Q797B3"
                     /db_xref="InterPro:IPR000917"
                     /db_xref="InterPro:IPR012160"
                     /db_xref="InterPro:IPR017849"
                     /db_xref="InterPro:IPR017850"
                     /db_xref="SubtiList:BG12980"
                     /db_xref="UniProtKB/Swiss-Prot:Q797B3"
                     /translation="MKKLFSYKLSFFVLAVILFWAKTYLSYKTEFNLGVKGTTQEILL
                     IFNPFSSAVFFLGLALLAKGRKSAIIMLIIDFLMTFVLYANILFYRFFDDFLTFPNIK
                     QSGNVGNMGDGIFSIMAGHDIFYFLDIIILIAVLIWRPELKEYKMKKRFASLVILSGI
                     ALFFINLHYAEKDRPQLLTRTFDRNYIVKYLGLYNYTIYDGVQTAQTETQRAYASSDD
                     LTSVENYTTSHYAKPNAEYFGSAKGKNIIKIHLESFQSFLIDYKLNGEEVTPFLNKLA
                     HGGEDVTYFDNFFHQTGQGKTSDAELTMDNSIFGLPEGSAFVTKGENTYQSLPAILDQ
                     KEGYTSAVLHGDYKSFWNRDQIYKHIGYDKFFDASTYDMSDENVINMGLKDKPFFTES
                     IPKLESLKQPFYAHLITLTNHYPFNLDEKDASLKKATTGDNTVDSYFQTARYLDEALE
                     QFFKELKEAGLYDNSVIMIYGDHNGISENHNRAMKEILGKEITDYQNAQNQRVPLMIR
                     VPGKKGGVNHTYGGEIDVMPTLLHLEGIDSQKYINFGTDLFSKDHDDTVAFRNGDFVT
                     PKYTSVDNIIYDTKTGEKLKANEETKNLKTRVNQQLSLSDSVLYKDLLRFHKLNDFKA
                     VDPSDYHYGKEKEIK*"
     gene            778282..780201
                     /gene="ltaSA"
                     /locus_tag="BSU_07260"
                     /old_locus_tag="BSU07260"
     downshifts      780200
                     /Source="Nicolas_upshifts"
                     /id="D357"
                     /incds=0
                     /nref=103
                     /ntot=261
                     /MaxReadThrough="1.69168"
                     /MaxDrop="7.8227"
                     /score="37.7648461"
                     /energy="-24"
                     /TU="NA"
                     /idTUdmin="U547"
                     /TUdmin=2
                     /isTUend="TRUE"
     promotor_-35    780289..780298
                     /Source="Nicolas_upshift_promotors"
                     /id="U549"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1421
                     /SigmaFactorBS="tttttttggttatacaaccaacttgaaaaaatagattccatT
                     TGGTCACCAaggctggctttctCTCATATCATTACAGTAGATtttgaaaccggattga
                     a"
                     /listShort="S251, yfnH, yfnG, yfnF, yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       780308..780436
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_798340_798468"
                     /HighExp="BT, B36, S8, S7, G/S, Pyr, B60, S6, Glucon, MG
                     5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S251"
     upshifts        780308
                     /Source="Nicolas_upshifts"
                     /id="U549"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1421
                     /SigmaFactorBS="tttttttggttatacaaccaacttgaaaaaatagattccatT
                     TGGTCACCAaggctggctttctCTCATATCATTACAGTAGATtttgaaaccggattga
                     a"
                     /listShort="S251, yfnH, yfnG, yfnF, yfnE, yfnD"
                     /GFF_Attribute="listLong"
     promotor_-10    780312..780331
                     /Source="Nicolas_upshift_promotors"
                     /id="U549"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1421
                     /SigmaFactorBS="tttttttggttatacaaccaacttgaaaaaatagattccatT
                     TGGTCACCAaggctggctttctCTCATATCATTACAGTAGATtttgaaaccggattga
                     a"
                     /listShort="S251, yfnH, yfnG, yfnF, yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(780362)
                     /Source="Nicolas_upshifts"
                     /id="D358"
                     /incds=0
                     /nref=2
                     /ntot=6
                     /MaxReadThrough="1.80969"
                     /MaxDrop="4.63324"
                     /score="20.6569889"
                     /energy="-23.4"
                     /TU="NA"
                     /idTUdmin="U552"
                     /TUdmin=4928
                     /isTUend="FALSE"
     CDS             780437..781201
                     /gene="spmH"
                     /locus_tag="BSU_07270"
                     /old_locus_tag="BSU07270"
                     /EC_number="2.7.7.33"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:15634670, 16357223, 26577401"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15634670, 16357223,
                     26577401; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase
                     (sporulation)"
                     /protein_id="NP_388608.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07270"
                     /db_xref="EnsemblGenomes-Tr:CAB12546"
                     /db_xref="GOA:O06486"
                     /db_xref="InterPro:IPR005835"
                     /db_xref="InterPro:IPR013446"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12979"
                     /db_xref="UniProtKB/Swiss-Prot:O06486"
                     /translation="MKAVILCGGKGTRMSEVTNDIPKPLAMIGGKPILWHIMKIYQYY
                     GVNEFILLLGYKGEKIKEYFLDYEWKHNSLTLDSSTGEVQMLGQPETWKITFLETGVD
                     TLTAGRILQAKDYIGDETFLLTYGDGLANINLFHLISYHQTKGAAATVTGIDKVSQFG
                     TLTVEDGMAKTFSEKTSSDGIINGGFFVLSPKVFDYLPKDGNTMFEDEPLKNLAKDGE
                     LAVYRHYGFWTAIDTYKNLLEVNKMWNQGQQVWKVW*"
     gene            780437..781201
                     /gene="spmH"
                     /locus_tag="BSU_07270"
                     /old_locus_tag="BSU07270"
     CDS             781208..782176
                     /gene="spmG"
                     /locus_tag="BSU_07280"
                     /old_locus_tag="BSU07280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative CDP-sugar-dehydratase/epimerase"
                     /protein_id="NP_388609.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07280"
                     /db_xref="EnsemblGenomes-Tr:CAB12547"
                     /db_xref="GOA:O06485"
                     /db_xref="InterPro:IPR016040"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12978"
                     /db_xref="UniProtKB/Swiss-Prot:O06485"
                     /translation="MSFWKNKNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQS
                     NLYQGEHIKKMNIVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEA
                     NILGTWNILEACRKHPLIKRVIVASSDKAYGDQENLPYDENMPLQGKHPYDVSKSCAD
                     LISHTYFHTYGLPVCITRCGNLYGGGDLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRD
                     YFYIEDAVQAYLLLAEKMEENNLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPKVL
                     NQGSNEIKHQYLSAEKARKLLNWTPAYTIDEGLEKTIEWYTEFFKK*"
     gene            781208..782176
                     /gene="spmG"
                     /locus_tag="BSU_07280"
                     /old_locus_tag="BSU07280"
     CDS             782200..783111
                     /gene="yfnF"
                     /locus_tag="BSU_07290"
                     /old_locus_tag="BSU07290"
                     /EC_number="2.4.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase"
                     /protein_id="NP_388610.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07290"
                     /db_xref="EnsemblGenomes-Tr:CAB12548"
                     /db_xref="InterPro:IPR005069"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12977"
                     /db_xref="UniProtKB/Swiss-Prot:O06484"
                     /translation="MTSAYCTVLSKGRLYQAVALFKSLEQVDQDSPIFILCMDEDTHR
                     VLQKLKMKQLNLVPVAALENELLLKLKETRDQSEYCWTMKPIFLQAVLNSNPELERVT
                     YIDGDLFFYADPSPIFENQPDCSVLLSRGDIVIPSFEKEQIDMLQRLLGRYNSGFISF
                     KHDDAGTDCLEWWKERCLEECKNAPGEGKFGDQGYLDYMSELFPNVCDITTPGVNIGH
                     WNYGQHTFSWKDGRIVLEDGSPLIFYHFSGYRIVSINEIKQIHETTRTDLPFVHELYQ
                     ETLPHIIQHMQTLDPEFNGFASKDDNK*"
     gene            782200..783111
                     /gene="yfnF"
                     /locus_tag="BSU_07290"
                     /old_locus_tag="BSU07290"
     promotor_-35    782989..782998
                     /Source="Nicolas_upshift_promotors"
                     /id="U550"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1259
                     /SigmaFactorBS="tcagcatcaatgaaatcaaacagattcatgaaacaACCCGCA
                     CAGatctgccgtttgTGCATGAACTGTATCAAGAGacactgccgcatatcattcagca
                     c"
                     /listShort="yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    783011..783030
                     /Source="Nicolas_upshift_promotors"
                     /id="U550"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1259
                     /SigmaFactorBS="tcagcatcaatgaaatcaaacagattcatgaaacaACCCGCA
                     CAGatctgccgtttgTGCATGAACTGTATCAAGAGacactgccgcatatcattcagca
                     c"
                     /listShort="yfnE, yfnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        783014
                     /Source="Nicolas_upshifts"
                     /id="U550"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1259
                     /SigmaFactorBS="tcagcatcaatgaaatcaaacagattcatgaaacaACCCGCA
                     CAGatctgccgtttgTGCATGAACTGTATCAAGAGacactgccgcatatcattcagca
                     c"
                     /listShort="yfnE, yfnD"
                     /GFF_Attribute="listLong"
     CDS             783140..784318
                     /gene="yfnE"
                     /locus_tag="BSU_07300"
                     /old_locus_tag="BSU07300"
                     /EC_number="2.4.1.-"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase (complex
                     carbohydrate synthase)"
                     /protein_id="NP_388611.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07300"
                     /db_xref="EnsemblGenomes-Tr:CAB12549"
                     /db_xref="GOA:O06483"
                     /db_xref="InterPro:IPR001173"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12976"
                     /db_xref="UniProtKB/Swiss-Prot:O06483"
                     /translation="MKASVIIPAYNSKERLYNSLLSLNQQECDEEFEVIVADNGSEDG
                     TLSMLESFQADFPLIFTRIKENRGIAYGRNQALRNARGDILIFHDSDMLAAKDLVAKH
                     IKAHENEENLVVCGLFWKRIYSFYYERFEEEHKEQLAKLTGEMPKKDKQKLLEEADIK
                     NGSFLDKSFDLDTDFIDVLKKILDEYGDDLKGYHMPWRFFITNNSSVKRKHVVDLGLF
                     DEGIVRYGFEDYDLGIRLHQAGLTFRLRRDIVSVHQEHPSNCKSVDDIRANIAYMCDK
                     YNNIRSLDVHLAFNGPFPPDMTNRIMADIQKLLESQKYDMLLNLFLELLHVVKERNID
                     PDWRKKSPRVTAKSFDLQTVRKLLPKAKKKLGVNDFANALYALVNDLLHVDLRSLDVV
                     *"
     gene            783140..784318
                     /gene="yfnE"
                     /locus_tag="BSU_07300"
                     /old_locus_tag="BSU07300"
     promotor_-35    783859..783865
                     /Source="Nicolas_upshift_promotors"
                     /id="U551"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.913086913086913"
                     /xcortree=307
                     /SigmaFactorBS="tcgggatcaggcttcatcaggccggATTGACCttcaggcttc
                     gccgTGATATTGTCAGTGTTCATCaggaacatccaagcaattgtaagtctgtagacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    783880..783899
                     /Source="Nicolas_upshift_promotors"
                     /id="U551"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.913086913086913"
                     /xcortree=307
                     /SigmaFactorBS="tcgggatcaggcttcatcaggccggATTGACCttcaggcttc
                     gccgTGATATTGTCAGTGTTCATCaggaacatccaagcaattgtaagtctgtagacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        783894
                     /Source="Nicolas_upshifts"
                     /id="U551"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.383616383616384"
                     /psig="0.913086913086913"
                     /xcortree=307
                     /SigmaFactorBS="tcgggatcaggcttcatcaggccggATTGACCttcaggcttc
                     gccgTGATATTGTCAGTGTTCATCaggaacatccaagcaattgtaagtctgtagacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             784319..785254
                     /gene="yfnD"
                     /locus_tag="BSU_07310"
                     /old_locus_tag="BSU07310"
                     /EC_number="2.4.1.-"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase (complex
                     carbohydrate synthase)"
                     /protein_id="NP_388612.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07310"
                     /db_xref="EnsemblGenomes-Tr:CAB12550"
                     /db_xref="InterPro:IPR005069"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG12975"
                     /db_xref="UniProtKB/Swiss-Prot:O31542"
                     /translation="MSTFHFSTIVSRTHIFKLMPMIHSLHEHCDDFHLYVLCVDQKAY
                     ELLQHVPWEHVTFVQLHEMEDPELLKAKSNRTFHEYCWTLKPAFLFHVMSKWDDAEYF
                     AHMDTDLFFFSDPARIFAENPTASLYLTDHRNSPRFMSYYDRTGRFNTGFVGAGNTKE
                     AYEAVWQWRQDCIEFCTVEMDTERKTYGDQRYVEKWPEQFKGVHVVKSIGANTALWNI
                     ENYKVGQKDGRVYIDETPLIFYHFSGFTLVTEKEFNLCWYYRIEDEATIKMIYMPYIL
                     NLKRWIDEIQSAFPDFADGFIPKHAVPDTHFIQLD*"
     gene            784319..785254
                     /gene="yfnD"
                     /locus_tag="BSU_07310"
                     /old_locus_tag="BSU07310"
     downshifts      785126
                     /Source="Nicolas_upshifts"
                     /id="D359"
                     /incds=1
                     /nref=1
                     /ntot=52
                     /MaxReadThrough="5.41459"
                     /MaxDrop="2.6465"
                     /score="34.8532284"
                     /energy="-15.2"
                     /TU="U549,U550"
                     /idTUdmin="U549"
                     /TUdmin="-110"
                     /isTUend="FALSE"
     downshifts      785236
                     /Source="Nicolas_upshifts"
                     /id="D360"
                     /incds=0
                     /nref=2
                     /ntot=30
                     /MaxReadThrough="2.32849"
                     /MaxDrop="5.65066"
                     /score="34.8532284"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U549"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(785277)
                     /Source="Nicolas_upshifts"
                     /id="D361"
                     /incds=0
                     /nref=158
                     /ntot=249
                     /MaxReadThrough="1.15199"
                     /MaxDrop="4.97014"
                     /score="32.9697757"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U552"
                     /TUdmin=13
                     /isTUend="TRUE"
     CDS             complement(785285..786514)
                     /gene="yfnC"
                     /locus_tag="BSU_07320"
                     /old_locus_tag="BSU07320"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388613.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07320"
                     /db_xref="EnsemblGenomes-Tr:CAB12551"
                     /db_xref="GOA:O06481"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12974"
                     /db_xref="UniProtKB/Swiss-Prot:O06481"
                     /translation="MAIAAPLKEKTVQKPGTTVYPILIIIGICHMLNDSLQAVIPAMF
                     PILERSMSLTFTQLGIIAFTLNMVSSVMQPVVGWYTDKRPRPYALPVGLTASMLGILG
                     LAFAPSFITILCCVFFIGLGSAIFHPEGSRVAYMAAGTKRGLAQSIYQVGGNSGQAMA
                     PLITALILVPLGQFGAVWFTLVAALAVMFLMYIAKWYASRLGSLAQKSGKQKKTAENT
                     AITKSVVSALIIIIFLIFARSWYTSAIGNFYTFYAMDTYHVSIQQAQSYIFVFLLFGA
                     IGTFLGGPLADRFGKRFVILGSLLCSAPLAIVLPFAGPVLAYGVLALIGLVLMSSFSV
                     TVVYAQELVPGKIGTMSGLTVGLAFGMGAIGAVALGALIDAAGLTPTMIAIAFLPVLG
                     ILAFLLPSDQKLREWHS*"
     gene            complement(785285..786514)
                     /gene="yfnC"
                     /locus_tag="BSU_07320"
                     /old_locus_tag="BSU07320"
     promotor_-10    complement(786543..786562)
                     /Source="Nicolas_upshift_promotors"
                     /id="U552"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.909090909090909"
                     /psig="0.997002997002997"
                     /xcortree=2717
                     /SigmaFactorBS="ggctgacggtatttctttcataagaatcttttttccTCTTGA
                     TAaattcttcaccttatGAATAATATGGTGGTATGCTttggttatatatgtaaggagg
                     a"
                     /listShort="yfnC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(786561)
                     /Source="Nicolas_upshifts"
                     /id="U552"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.909090909090909"
                     /psig="0.997002997002997"
                     /xcortree=2717
                     /SigmaFactorBS="ggctgacggtatttctttcataagaatcttttttccTCTTGA
                     TAaattcttcaccttatGAATAATATGGTGGTATGCTttggttatatatgtaaggagg
                     a"
                     /listShort="yfnC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(786578..786585)
                     /Source="Nicolas_upshift_promotors"
                     /id="U552"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.909090909090909"
                     /psig="0.997002997002997"
                     /xcortree=2717
                     /SigmaFactorBS="ggctgacggtatttctttcataagaatcttttttccTCTTGA
                     TAaattcttcaccttatGAATAATATGGTGGTATGCTttggttatatatgtaaggagg
                     a"
                     /listShort="yfnC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(786625..787332)
                     /gene="pynN"
                     /locus_tag="BSU_07330"
                     /old_locus_tag="BSU07330"
                     /EC_number="3.1.3.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine nucleotide phosphatase (promiscuous)"
                     /protein_id="NP_388614.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07330"
                     /db_xref="EnsemblGenomes-Tr:CAB12552"
                     /db_xref="GOA:O06480"
                     /db_xref="InterPro:IPR006439"
                     /db_xref="InterPro:IPR011951"
                     /db_xref="InterPro:IPR023198"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="PDB:3ED5"
                     /db_xref="PDB:3I76"
                     /db_xref="SubtiList:BG12973"
                     /db_xref="UniProtKB/Swiss-Prot:O06480"
                     /translation="MKRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQ
                     YKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYGYEADGALLEQKYRRFLEEGHQLI
                     DGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEY
                     FNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIR
                     KLEELYHILNIENTVSC*"
     gene            complement(786625..787332)
                     /gene="pynN"
                     /locus_tag="BSU_07330"
                     /old_locus_tag="BSU07330"
     downshifts      complement(786654)
                     /Source="Nicolas_upshifts"
                     /id="D362"
                     /incds=0
                     /nref=25
                     /ntot=169
                     /MaxReadThrough="2.75071"
                     /MaxDrop="4.28644"
                     /score="1.09492978"
                     /energy="-15.7"
                     /TU="NA"
                     /idTUdmin="U553"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_feature    complement(787355..787374)
                     /Source="Nicolas_upshift_promotors"
                     /id="U553"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig="0.998001998001998"
                     /xcortree=3118
                     /SigmaFactorBS="ttattaaacaaataatctcttttcagccggcggtgcctcacc
                     cgccggctttttcctttttttaTGTGCTATACTTTGAATACAtatgagaaagggagac
                     a"
                     /listShort="yfnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(787378)
                     /Source="Nicolas_upshifts"
                     /id="U553"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.985014985014985"
                     /psig="0.998001998001998"
                     /xcortree=3118
                     /SigmaFactorBS="ttattaaacaaataatctcttttcagccggcggtgcctcacc
                     cgccggctttttcctttttttaTGTGCTATACTTTGAATACAtatgagaaagggagac
                     a"
                     /listShort="yfnB"
                     /GFF_Attribute="listLong"
     CDS             complement(787424..788809)
                     /gene="mtrA"
                     /locus_tag="BSU_07340"
                     /old_locus_tag="BSU07340"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12022921, 15849754, 16850406, 17114254, 18632116"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12022921, 15849754,
                     16850406, 17114254, 18632116; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribose permease"
                     /protein_id="NP_388615.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07340"
                     /db_xref="EnsemblGenomes-Tr:CAB12553"
                     /db_xref="GOA:Q797A7"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG12972"
                     /db_xref="UniProtKB/Swiss-Prot:Q797A7"
                     /translation="MSSLFRKKPLETLSAQSKSKSLARTLSAFDLTLLGIGCVIGTGI
                     FVITGTVAATGAGPALIISFILAGLACALAAFCYAEFSSSIPISGSVYSYSYVTLGEL
                     LAFLIGWDLMLEYVIALSAVATGWSSYFQSLLAGFNLHIPAALTGAPGSMAGAVFNLP
                     AAVIILLITAIVSRGVKESTRFNNVIVLMKIAIILLFIIVGIGYVKPDNWSPFMPFGM
                     KGVILSAATVFFAYLGFDAVSNASEEVKNPQKNMPVGIISALAVCTVLYIAVSLVLTG
                     MMPYAKLNVGDPVSFALKFVGQDAVAGIISVGAIIGITTVMLALLYAQVRLTFAMSRD
                     GLLPGLFAKVHPSFKTPFRNTWLTGIVAAGIAGFINLGTLAHLVNMGTLAAFTVISIA
                     VIVLRKKHPEIKASFRVPFVPVVPIISAGICLWFMYSLPGVTWLSFVIWIAVGTLVYF
                     LYSRKHSLLNK*"
     gene            complement(787424..788809)
                     /gene="mtrA"
                     /locus_tag="BSU_07340"
                     /old_locus_tag="BSU07340"
     downshifts      complement(787446)
                     /Source="Nicolas_upshifts"
                     /id="D363"
                     /incds=0
                     /nref=8
                     /ntot=91
                     /MaxReadThrough="3.68565"
                     /MaxDrop="4.73728"
                     /score="31.1617384"
                     /energy="-15.4"
                     /TU="U554"
                     /idTUdmin="U554"
                     /TUdmin="-770"
                     /isTUend="FALSE"
     promotor_-10    complement(788858..788877)
                     /Source="Nicolas_upshift_promotors"
                     /id="U554"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig=1
                     /xcortree=2397
                     /SigmaFactorBS="tgtttcgcttctatcatttaaagcagaaaaatatttTATTGA
                     CTacgtcaaatttcgaCAATATAATACAACAAGAACtgcatataatgattagaatatt
                     t"
                     /listShort="yfnA, yfnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(788875)
                     /Source="Nicolas_upshifts"
                     /id="U554"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig=1
                     /xcortree=2397
                     /SigmaFactorBS="tgtttcgcttctatcatttaaagcagaaaaatatttTATTGA
                     CTacgtcaaatttcgaCAATATAATACAACAAGAACtgcatataatgattagaatatt
                     t"
                     /listShort="yfnA, yfnB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(788892..788899)
                     /Source="Nicolas_upshift_promotors"
                     /id="U554"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig=1
                     /xcortree=2397
                     /SigmaFactorBS="tgtttcgcttctatcatttaaagcagaaaaatatttTATTGA
                     CTacgtcaaatttcgaCAATATAATACAACAAGAACtgcatataatgattagaatatt
                     t"
                     /listShort="yfnA, yfnB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    788977..788984
                     /Source="Nicolas_upshift_promotors"
                     /id="U555"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2800
                     /SigmaFactorBS="aacagcgttgtcgtatcataggatagtaatttttactaatcg
                     tatATTCAATTttatgcaagatgaACCGATAGAAAAAATAGATtcgcccatattttga
                     t"
                     /listShort="yfmT, yfmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        788992
                     /Source="Nicolas_upshifts"
                     /id="U555"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2800
                     /SigmaFactorBS="aacagcgttgtcgtatcataggatagtaatttttactaatcg
                     tatATTCAATTttatgcaagatgaACCGATAGAAAAAATAGATtcgcccatattttga
                     t"
                     /listShort="yfmT, yfmS"
                     /GFF_Attribute="listLong"
     promotor_-10    788998..789016
                     /Source="Nicolas_upshift_promotors"
                     /id="U555"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2800
                     /SigmaFactorBS="aacagcgttgtcgtatcataggatagtaatttttactaatcg
                     tatATTCAATTttatgcaagatgaACCGATAGAAAAAATAGATtcgcccatattttga
                     t"
                     /listShort="yfmT, yfmS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             789059..790516
                     /gene="vdhT"
                     /locus_tag="BSU_07350"
                     /old_locus_tag="BSU07350"
                     /EC_number="1.2.1.67"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 15033535, 26658822;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="vanillin dehydrogenase"
                     /protein_id="NP_388616.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07350"
                     /db_xref="EnsemblGenomes-Tr:CAB12554"
                     /db_xref="GOA:O06478"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="InterPro:IPR029510"
                     /db_xref="SubtiList:BG12971"
                     /db_xref="UniProtKB/Swiss-Prot:O06478"
                     /translation="MFQYEELNKQFIGGKWQEGSSPNVLENKNPYTQKTFTTFRKATA
                     DDVDEAYRAAALAKKKWDAVNPFEKRTILEKAVTYIEENEEAIIYLIMEELGGTRLKA
                     AFEIGLVKNIIKEAATFPIRMEGKILPSTIDGKENRLYRVPAGVVGVISPFNFPFFLS
                     MKSVAPALGAGNGVVLKPHEETPICGGTLIAKIFENAGIPAGLLNVVVTDIAEIGDSF
                     VEHPVPRIISFTGSTKVGSYIGQLAMKHFKKPLLELGGNSAFIVLEDADIEYAVNAAV
                     FSRFTHQGQICMSANRVLVHSSIYDKFLELYQAKVESLKVGDPMDPDTIIGPLINSRQ
                     TDGLMKTVEQAIEEGAVPVKLGGFNGTIVEPTILKDVKPFMSIAKEELFGPVVSFMKF
                     DSEDEAVDIANETPFGLSGAVHTSNLERGVAFAKRIETGMIHVNDTTINDEPNVAFGG
                     EKQSGLGRLNGEWSLEEFTTLKWISVQHEKRSFPY*"
     gene            789059..790516
                     /gene="vdhT"
                     /locus_tag="BSU_07350"
                     /old_locus_tag="BSU07350"
     promotor_-10    complement(789852..789871)
                     /Source="Nicolas_upshift_promotors"
                     /id="U556"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1237
                     /SigmaFactorBS="ctgacatgcaaatctgcccttgatgtgtaaatcGGCTGAACA
                     CcgccgcattgacCGCATATTCTATATCTGCATcctcaagtacgatgaaggcgctgtt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(789866)
                     /Source="Nicolas_upshifts"
                     /id="U556"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1237
                     /SigmaFactorBS="ctgacatgcaaatctgcccttgatgtgtaaatcGGCTGAACA
                     CcgccgcattgacCGCATATTCTATATCTGCATcctcaagtacgatgaaggcgctgtt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(789884..789893)
                     /Source="Nicolas_upshift_promotors"
                     /id="U556"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1237
                     /SigmaFactorBS="ctgacatgcaaatctgcccttgatgtgtaaatcGGCTGAACA
                     CcgccgcattgacCGCATATTCTATATCTGCATcctcaagtacgatgaaggcgctgtt
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             790530..791390
                     /gene="yfmS"
                     /locus_tag="BSU_07360"
                     /old_locus_tag="BSU07360"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15033535, 27899502;
                     Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis sensory transducer (sensed target
                     unknown)"
                     /protein_id="NP_388617.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07360"
                     /db_xref="EnsemblGenomes-Tr:CAB12555"
                     /db_xref="GOA:O06477"
                     /db_xref="InterPro:IPR004089"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="SubtiList:BG12970"
                     /db_xref="UniProtKB/Swiss-Prot:O06477"
                     /translation="MELTINTEKETADILDAFIKVAPYLNSLVQDDITIGIYDTEKLL
                     VNIPAKTFSLNVKAGDPLQEGDIITDAIRSNQKKTSMVPKELFGFPLIARAIPLHDEN
                     GRVIGGVGLGTSLEESSKLHDVAESLSAVVEQTAAAISDISESINGFSTQMSGISSQA
                     KKVSESAGEIADISVTVKGISDQSNLLGLNAAIEAARAGESGKGFSVVADEIRKLATH
                     SKENVGQIDQITKKIHSLLKGLEESIESINQHTDGQAAAVEQISATMQEISGSAQHLA
                     KMAEKALEEE*"
     gene            790530..791390
                     /gene="yfmS"
                     /locus_tag="BSU_07360"
                     /old_locus_tag="BSU07360"
     downshifts      791374
                     /Source="Nicolas_upshifts"
                     /id="D364"
                     /incds=0
                     /nref=208
                     /ntot=237
                     /MaxReadThrough="2.9987"
                     /MaxDrop="6.02377"
                     /score="31.9989755"
                     /energy="-16.7"
                     /TU="U555"
                     /idTUdmin="U555"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     promotor_-35    791458..791465
                     /Source="Nicolas_upshift_promotors"
                     /id="U557"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig=1
                     /xcortree=1991
                     /SigmaFactorBS="tatcctgcatttccatgaaattcgtctgacgtttTACTAGTT
                     ttattccagcggcTGATTTAAAATGTACACATGaacttacgtgaggattgataggaac
                     c"
                     /listShort="yfmR, yfmQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    791479..791498
                     /Source="Nicolas_upshift_promotors"
                     /id="U557"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig=1
                     /xcortree=1991
                     /SigmaFactorBS="tatcctgcatttccatgaaattcgtctgacgtttTACTAGTT
                     ttattccagcggcTGATTTAAAATGTACACATGaacttacgtgaggattgataggaac
                     c"
                     /listShort="yfmR, yfmQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        791484
                     /Source="Nicolas_upshifts"
                     /id="U557"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig=1
                     /xcortree=1991
                     /SigmaFactorBS="tatcctgcatttccatgaaattcgtctgacgtttTACTAGTT
                     ttattccagcggcTGATTTAAAATGTACACATGaacttacgtgaggattgataggaac
                     c"
                     /listShort="yfmR, yfmQ"
                     /GFF_Attribute="listLong"
     CDS             791525..793414
                     /gene="ettA"
                     /locus_tag="BSU_07370"
                     /old_locus_tag="BSU07370"
                     /EC_number="3.6.3.-"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10715006, 16109936,
                     18848624, 19948254, 24389465, 24389466; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative energy-dependent translational
                     throttleA"
                     /protein_id="NP_388618.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07370"
                     /db_xref="EnsemblGenomes-Tr:CAB12556"
                     /db_xref="GOA:O06476"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR032524"
                     /db_xref="InterPro:IPR032781"
                     /db_xref="SubtiList:BG12969"
                     /db_xref="UniProtKB/Swiss-Prot:O06476"
                     /translation="MSILKAENLYKTYGDKTLFDHISFHIEENERIGLIGPNGTGKST
                     LLKVIAGLESIEEGEITKSGSVQVEFLHQDPELPAGQTVLEHIYSGESAVMKTLREYE
                     KALYELGKDPENEQRQKHLLAAQAKMDANNAWDANTLAKTVLSKLGVNDVTKPVNELS
                     GGQKKRVAIAKNLIQPADLLILDEPTNHLDNETIEWLEGYLSQYPGAVMLVTHDRYFL
                     NRVTNRIYELERGSLYTYKGNYEVFLEKRAEREAQAEQKETKRQNLLRRELAWLRRGA
                     KARSTKQKARIDRVETLKEQTGPQSSGSLDFAIGSHRLGKQVIEAENVMIAYDGRMLV
                     DRFNELVIPGERIGIIGPNGIGKTTLLNALAGRHTPDGGDITIGQTVRIGYYTQDHSE
                     MNGELKVIDYIKETAEVVKTADGDMITAEQMLERFLFPRSMQQTYIRKLSGGEKRRLY
                     LLQVLMQEPNVLFLDEPTNDLDTETLSVLEDYIDQFPGVVITVSHDRYFLDRVVDRLI
                     VFEGNGVISRFQGSYSDYMEESKAKKAAPKPAAEEKTAEAEPKKKRKKLSYKDQLEWD
                     GIEDKIAQLEEKHEQLEADIAAAGSDFGKIQELMAEQAKTAEELEAAMDRWTELSLMI
                     EELES*"
     gene            791525..793414
                     /gene="ettA"
                     /locus_tag="BSU_07370"
                     /old_locus_tag="BSU07370"
     downshifts      793398
                     /Source="Nicolas_upshifts"
                     /id="D365"
                     /incds=0
                     /nref=2
                     /ntot=134
                     /MaxReadThrough="2.98669"
                     /MaxDrop="2.72484"
                     /score="30.3267801"
                     /energy="-13.8"
                     /TU="U557"
                     /idTUdmin="U557"
                     /TUdmin="-572"
                     /isTUend="FALSE"
     misc_feature    793478..793497
                     /Source="Nicolas_upshift_promotors"
                     /id="U558"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig="0.99000999000999"
                     /xcortree=1625
                     /SigmaFactorBS="gcagcaggccgcgctttttttcacataatggacaaaaacgaa
                     ccggcctgctTATGTTAGGATAAAGTTGTGtgtcagcggcacatggaaaactaacgga
                     g"
                     /listShort="yfmQ"
                     /listLong="yfmP, yfmO"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        793486
                     /Source="Nicolas_upshifts"
                     /id="U558"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig="0.99000999000999"
                     /xcortree=1625
                     /SigmaFactorBS="gcagcaggccgcgctttttttcacataatggacaaaaacgaa
                     ccggcctgctTATGTTAGGATAAAGTTGTGtgtcagcggcacatggaaaactaacgga
                     g"
                     /listShort="yfmQ"
                     /listLong="yfmP, yfmO"
     CDS             793537..793983
                     /gene="yfmQ"
                     /locus_tag="BSU_07380"
                     /old_locus_tag="BSU07380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 26483775"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388619.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07380"
                     /db_xref="EnsemblGenomes-Tr:CAB12557"
                     /db_xref="GOA:O06475"
                     /db_xref="InterPro:IPR019723"
                     /db_xref="SubtiList:BG12968"
                     /db_xref="UniProtKB/Swiss-Prot:O06475"
                     /translation="MTWAIVMLILMSLVKIVLTCLPTGVIEWLLGKFEVHAKLSDENA
                     SLSLDGKRLEGAEKQKVIDQFNEAIFLEKYYIYPGDEERYLHPENGGTPLVIDTKKGK
                     KDVKLFVYRYDDHIDVVKQYKKKVIAYRVLSESLQKESLSVAGSLA*"
     gene            793537..793983
                     /gene="yfmQ"
                     /locus_tag="BSU_07380"
                     /old_locus_tag="BSU07380"
     downshifts      complement(793539)
                     /Source="Nicolas_upshifts"
                     /id="D366"
                     /incds=0
                     /nref=48
                     /ntot=154
                     /MaxReadThrough="1.16717"
                     /MaxDrop="4.57866"
                     /score="0.689181271"
                     /energy="-10.2"
                     /TU="NA"
                     /idTUdmin="U559"
                     /TUdmin=1
                     /isTUend="TRUE"
     promotor_-10    complement(793623..793626)
                     /Source="Nicolas_upshift_promotors"
                     /id="U559"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.597402597402597"
                     /psig="0.063936063936064"
                     /xcortree=1597
                     /SigmaFactorBS="tttccatctagagagagactcgcattttcgtcactcagcttg
                     gCGtgcacttcaaatttgccGAGCagccattctatgacgcctgtaggaagacaggtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(793628)
                     /Source="Nicolas_upshifts"
                     /id="U559"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.597402597402597"
                     /psig="0.063936063936064"
                     /xcortree=1597
                     /SigmaFactorBS="tttccatctagagagagactcgcattttcgtcactcagcttg
                     gCGtgcacttcaaatttgccGAGCagccattctatgacgcctgtaggaagacaggtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(793644..793645)
                     /Source="Nicolas_upshift_promotors"
                     /id="U559"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.597402597402597"
                     /psig="0.063936063936064"
                     /xcortree=1597
                     /SigmaFactorBS="tttccatctagagagagactcgcattttcgtcactcagcttg
                     gCGtgcacttcaaatttgccGAGCagccattctatgacgcctgtaggaagacaggtta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      793970
                     /Source="Nicolas_upshifts"
                     /id="D367"
                     /incds=0
                     /nref=254
                     /ntot=267
                     /MaxReadThrough="3.12706"
                     /MaxDrop="7.87026"
                     /score="13.6774886"
                     /energy="-8"
                     /TU="U558"
                     /idTUdmin="U557"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    794046..794053
                     /Source="Nicolas_upshift_promotors"
                     /id="U560"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2124
                     /SigmaFactorBS="gtcttttttattgttttttaaaacttaACGTTTACgttaagg
                     ttcaaaAGGTGTATAATGGTAACAGAaacggcgaagggggatttaccttggaatggat
                     g"
                     /listShort="yfmP, yfmO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    794067..794086
                     /Source="Nicolas_upshift_promotors"
                     /id="U560"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2124
                     /SigmaFactorBS="gtcttttttattgttttttaaaacttaACGTTTACgttaagg
                     ttcaaaAGGTGTATAATGGTAACAGAaacggcgaagggggatttaccttggaatggat
                     g"
                     /listShort="yfmP, yfmO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        794079
                     /Source="Nicolas_upshifts"
                     /id="U560"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.999000999001"
                     /xcortree=2124
                     /SigmaFactorBS="gtcttttttattgttttttaaaacttaACGTTTACgttaagg
                     ttcaaaAGGTGTATAATGGTAACAGAaacggcgaagggggatttaccttggaatggat
                     g"
                     /listShort="yfmP, yfmO"
                     /GFF_Attribute="listLong"
     CDS             794108..794530
                     /gene="copP"
                     /locus_tag="BSU_07390"
                     /old_locus_tag="BSU07390"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14663075"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14663075; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (MerR family) of
                     metal(copper) efflux transporter expression"
                     /protein_id="NP_388620.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07390"
                     /db_xref="EnsemblGenomes-Tr:CAB12558"
                     /db_xref="GOA:O06474"
                     /db_xref="InterPro:IPR000551"
                     /db_xref="InterPro:IPR009061"
                     /db_xref="SubtiList:BG12967"
                     /db_xref="UniProtKB/Swiss-Prot:O06474"
                     /translation="MEWMKIDQVAKRSGLTKRTIRFYEEIGLIPAPKRTDGGVRLYSE
                     DDMEELEKVISTKEVLGFSLQELQHFMETSRQLELNKEGYLLSLDPKERKEKLEEIQE
                     TLNHQLDLIDEKIRTFQSFKERLQGMKGKAERAIQSIE*"
     gene            794108..794530
                     /gene="copP"
                     /locus_tag="BSU_07390"
                     /old_locus_tag="BSU07390"
     downshifts      794366
                     /Source="Nicolas_upshifts"
                     /id="D368"
                     /incds=1
                     /nref=2
                     /ntot=135
                     /MaxReadThrough="4.24358"
                     /MaxDrop="2.69696"
                     /score="13.6774886"
                     /energy="-8"
                     /TU="U560"
                     /idTUdmin="U558"
                     /TUdmin=308
                     /isTUend="FALSE"
     CDS             794596..795786
                     /gene="copO"
                     /locus_tag="BSU_07400"
                     /old_locus_tag="BSU07400"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:14663075, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14663075, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="metal (copper) efflux transporter"
                     /protein_id="NP_388621.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07400"
                     /db_xref="EnsemblGenomes-Tr:CAB12559"
                     /db_xref="GOA:O06473"
                     /db_xref="InterPro:IPR001958"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12966"
                     /db_xref="UniProtKB/Swiss-Prot:O06473"
                     /translation="MDKTTQVNQKTGLLSQPKAVWAVAFACVISFMGIGLVDPILPAI
                     AAQLHASPSEVSLLFTSYLLVTGFMMFFSGAISSRIGAKWTLILGLIFIIVFAGLGGS
                     SSSIAQLVGYRGGWGLGNALFISTALAVIVGVSVGGSAQAIILYEAALGLGISVGPLA
                     GGELGSISWRAPFFGVSVLMFIALIAISFMLPKLPKPAKRVGVFDAMKALKYKGLLTM
                     AVSAFLYNFGFFILLAYSPFVLDLDEHGLGYVFFGWGLLLAITSVFTAPLVHKALGTV
                     RSLVVLFIAFAAILVIMGIWTDHQTLIITCIVVAGAVLGMVNTIMTTAVMGSAPVERS
                     IASSAYSSVRFIGGALAPWIAGMLSEHFTASTPYTVGGIVVFVGMLVLLMGRKHLAGI
                     KAGH*"
     gene            794596..795786
                     /gene="copO"
                     /locus_tag="BSU_07400"
                     /old_locus_tag="BSU07400"
     downshifts      complement(795850)
                     /Source="Nicolas_upshifts"
                     /id="D369"
                     /incds=0
                     /nref=1
                     /ntot=10
                     /MaxReadThrough="-0.0437700000000003"
                     /MaxDrop="2.92105"
                     /score="-8.93016606"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U562"
                     /TUdmin=528
                     /isTUend="FALSE"
     CDS             796077..796232
                     /gene="yfmN"
                     /locus_tag="BSU_07410"
                     /old_locus_tag="BSU07410"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388622.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07410"
                     /db_xref="EnsemblGenomes-Tr:CAB12560"
                     /db_xref="SubtiList:BG12965"
                     /db_xref="UniProtKB/Swiss-Prot:O06472"
                     /translation="MDKAKPDEYDQKCLETLYQYIHSVMKNSFSRSSGLPLGKMRRIL
                     SCLPKES*"
     gene            796077..796232
                     /gene="yfmN"
                     /locus_tag="BSU_07410"
                     /old_locus_tag="BSU07410"
     CDS             complement(796352..797908)
                     /gene="ettM"
                     /locus_tag="BSU_07420"
                     /old_locus_tag="BSU07420"
                     /EC_number="3.6.3.-"
                     /function="16.7: Manage energy"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12486040, 16109936,
                     16684363, 22333191, 24389466; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative energy-sensing inhibitor of
                     translation"
                     /protein_id="NP_388623.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07420"
                     /db_xref="EnsemblGenomes-Tr:CAB12571"
                     /db_xref="GOA:O34512"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR032781"
                     /db_xref="SubtiList:BG12964"
                     /db_xref="UniProtKB/Swiss-Prot:O34512"
                     /translation="MSILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKST
                     FMNIITGKLEPDEGKVEWSKNVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMN
                     EIYNKMGEADPDELEKLLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDV
                     TDLSGGQRTKVLLAKLLLEKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHD
                     IPFLNSVINLIYHVENQELTRYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFV
                     ARNKARVSTRNMAMSRQKKLDKMDMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIG
                     YDSPLSRPLNLRMERGQKIALYGANGIGKTTLLKSLLGEIQPLEGSVERGEHIYTGYF
                     EQEVKETNNNTCIEEVWSEFPSYTQYEIRAALAKCGLTTKHIESRVSVLSGGEKAKVR
                     LCKLINSETNLLVLDEPTNHLDADAKEELKRALKEYKGSILLISHEPDFYMDIATETW
                     NCESWTTKVL*"
     gene            complement(796352..797908)
                     /gene="ettM"
                     /locus_tag="BSU_07420"
                     /old_locus_tag="BSU07420"
     downshifts      complement(796376)
                     /Source="Nicolas_upshifts"
                     /id="D370"
                     /incds=0
                     /nref=173
                     /ntot=264
                     /MaxReadThrough="0.35675"
                     /MaxDrop="5.82627"
                     /score="21.7805812"
                     /energy="-12"
                     /TU="NA"
                     /idTUdmin="U562"
                     /TUdmin=2
                     /isTUend="TRUE"
     promotor_-35    797738..797744
                     /Source="Nicolas_upshift_promotors"
                     /id="U561"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=894
                     /SigmaFactorBS="tttttgaccattcgacttttccCTCATCAggttcaagctttc
                     cGGTAATAATATTcatgaaggttgattttccttcaccgtttgcgccgatcaagccgac
                     g"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    797759..797770
                     /Source="Nicolas_upshift_promotors"
                     /id="U561"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=894
                     /SigmaFactorBS="tttttgaccattcgacttttccCTCATCAggttcaagctttc
                     cGGTAATAATATTcatgaaggttgattttccttcaccgtttgcgccgatcaagccgac
                     g"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        797776
                     /Source="Nicolas_upshifts"
                     /id="U561"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=894
                     /SigmaFactorBS="tttttgaccattcgacttttccCTCATCAggttcaagctttc
                     cGGTAATAATATTcatgaaggttgattttccttcaccgtttgcgccgatcaagccgac
                     g"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(797958..797977)
                     /Source="Nicolas_upshift_promotors"
                     /id="U562"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.927072927072927"
                     /xcortree=2609
                     /SigmaFactorBS="gcaatttttctttttctttcctataCCTTTcaacattccgaa
                     tccTCCTTTATAATCAAAAGGGTgaatattacacgccgattgtgcgtgtttgataacg
                     a"
                     /listShort="yfmM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(797962)
                     /Source="Nicolas_upshifts"
                     /id="U562"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.927072927072927"
                     /xcortree=2609
                     /SigmaFactorBS="gcaatttttctttttctttcctataCCTTTcaacattccgaa
                     tccTCCTTTATAATCAAAAGGGTgaatattacacgccgattgtgcgtgtttgataacg
                     a"
                     /listShort="yfmM"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(797993..797997)
                     /Source="Nicolas_upshift_promotors"
                     /id="U562"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.927072927072927"
                     /xcortree=2609
                     /SigmaFactorBS="gcaatttttctttttctttcctataCCTTTcaacattccgaa
                     tccTCCTTTATAATCAAAAGGGTgaatattacacgccgattgtgcgtgtttgataacg
                     a"
                     /listShort="yfmM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    798018..798021
                     /Source="Nicolas_upshift_promotors"
                     /id="U563"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2547
                     /SigmaFactorBS="attcggaatgttgaaaggtataggaaagaaaaagaaaaATTG
                     cgttccgggcgaggtTTTGAGATACTATGGAATAGatttcaggaattgaggagaacaa
                     a"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    798037..798056
                     /Source="Nicolas_upshift_promotors"
                     /id="U563"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2547
                     /SigmaFactorBS="attcggaatgttgaaaggtataggaaagaaaaagaaaaATTG
                     cgttccgggcgaggtTTTGAGATACTATGGAATAGatttcaggaattgaggagaacaa
                     a"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        798040
                     /Source="Nicolas_upshifts"
                     /id="U563"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=2547
                     /SigmaFactorBS="attcggaatgttgaaaggtataggaaagaaaaagaaaaATTG
                     cgttccgggcgaggtTTTGAGATACTATGGAATAGatttcaggaattgaggagaacaa
                     a"
                     /listShort="yfmL"
                     /GFF_Attribute="listLong"
     CDS             798081..799211
                     /gene="yfmL"
                     /locus_tag="BSU_07430"
                     /old_locus_tag="BSU07430"
                     /EC_number="3.6.1.-"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11976317; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ATP-dependent RNA helicase"
                     /protein_id="NP_388624.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07430"
                     /db_xref="EnsemblGenomes-Tr:CAB12572"
                     /db_xref="GOA:O34750"
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR011545"
                     /db_xref="InterPro:IPR014001"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12963"
                     /db_xref="UniProtKB/Swiss-Prot:O34750"
                     /translation="MTQTWPFLHNAQSFIQENWNASGFQKPTPVQEQAAQLIMDGKDV
                     IAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSELR
                     AASLIGGANVKKQVEKLKKHPHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLVL
                     PEHRETMKQIIKTTLRDRQLLCFSATLKKETEDVLRELAQEPEVLKVQRSKAEAGKVK
                     HQYLICDQRDKVKLLQKLSRLEGMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAK
                     KMERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVIHADIPDEDGYVHRSGRTGRA
                     GKEGNVLSLVTKLEESKLKKMAKKLGVELSEAVYAGGKLKTK*"
     gene            798081..799211
                     /gene="yfmL"
                     /locus_tag="BSU_07430"
                     /old_locus_tag="BSU07430"
     downshifts      799194
                     /Source="Nicolas_upshifts"
                     /id="D371"
                     /incds=0
                     /nref=43
                     /ntot=133
                     /MaxReadThrough="2.93747"
                     /MaxDrop="4.41385"
                     /score="23.4253604"
                     /energy="-5.9"
                     /TU="NA"
                     /idTUdmin="U563"
                     /TUdmin="-12"
                     /isTUend="TRUE"
     CDS             799279..799725
                     /gene="yfmK"
                     /locus_tag="BSU_07440"
                     /old_locus_tag="BSU07440"
                     /EC_number="2.3.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_388625.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07440"
                     /db_xref="EnsemblGenomes-Tr:CAB12573"
                     /db_xref="GOA:O34536"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG12962"
                     /db_xref="UniProtKB/Swiss-Prot:O34536"
                     /translation="MASIDRFQVMQEPELKILEHWFENEDTRRRMDGMLLLDEWYARV
                     NKDKHDTVIMAYDGQLPAGMVVIEFGEERTYIGLIVNPLYRLKGYGKQILQKLMTEPD
                     FTSVREWVACIEEDNRISLACFQAAGFTLEDTEPDEDGFLTLILRN*"
     gene            799279..799725
                     /gene="yfmK"
                     /locus_tag="BSU_07440"
                     /old_locus_tag="BSU07440"
     CDS             complement(799778..800797)
                     /gene="yfmJ"
                     /locus_tag="BSU_07450"
                     /old_locus_tag="BSU07450"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388626.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07450"
                     /db_xref="EnsemblGenomes-Tr:CAB12574"
                     /db_xref="GOA:O34812"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12961"
                     /db_xref="UniProtKB/Swiss-Prot:O34812"
                     /translation="MTASQQQIQLARRPQGIPVHEDFRFETIPVPEPKQGEVLVKTLY
                     VSVDPYMRGRMQDTKSYVEPFALDKALSGGVIAEVVSDGNHLKKGDIVIGNLSWQEFS
                     AVSESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGS
                     TVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDV
                     YFDNVGGPISDAVMNLLNEFARIPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQG
                     FIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENIPDAFLGLFKGENKGKQLIK
                     VSDPS*"
     gene            complement(799778..800797)
                     /gene="yfmJ"
                     /locus_tag="BSU_07450"
                     /old_locus_tag="BSU07450"
     downshifts      complement(799788)
                     /Source="Nicolas_upshifts"
                     /id="D372"
                     /incds=0
                     /nref=183
                     /ntot=252
                     /MaxReadThrough="2.26899"
                     /MaxDrop="5.73395"
                     /score="20.8047206"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U564"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(800818..800837)
                     /Source="Nicolas_upshift_promotors"
                     /id="U564"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig=1
                     /xcortree=3180
                     /SigmaFactorBS="accttttttgtatgccagcttacctTTTGTATTtcctctcct
                     gtcCATGTTACAGTGGTGTCAACcaagtgataggaggatgaaaatgacagcatctcag
                     c"
                     /listShort="yfmJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(800822)
                     /Source="Nicolas_upshifts"
                     /id="U564"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig=1
                     /xcortree=3180
                     /SigmaFactorBS="accttttttgtatgccagcttacctTTTGTATTtcctctcct
                     gtcCATGTTACAGTGGTGTCAACcaagtgataggaggatgaaaatgacagcatctcag
                     c"
                     /listShort="yfmJ"
                     /GFF_Attribute="listLong"
     S_feature       complement(800824..801278)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_818856_819310_c"
                     /HighExp="S2, S1, Pyr, T4.0H, T0.0H, T-2.40H, T3.30H,
                     T-1.40H, T-0.40H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S252"
     promotor_-35    complement(800850..800857)
                     /Source="Nicolas_upshift_promotors"
                     /id="U564"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig=1
                     /xcortree=3180
                     /SigmaFactorBS="accttttttgtatgccagcttacctTTTGTATTtcctctcct
                     gtcCATGTTACAGTGGTGTCAACcaagtgataggaggatgaaaatgacagcatctcag
                     c"
                     /listShort="yfmJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    800916..800923
                     /Source="Nicolas_upshift_promotors"
                     /id="U565"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=1939
                     /SigmaFactorBS="atagatgagcttatgctttctacaagctctttTGTTTTAAaa
                     gttctctttagTCATTTATCATTATTAGAAAacagaacagaaaaagagctcctgtaca
                     c"
                     /listShort="S253"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    800937..800956
                     /Source="Nicolas_upshift_promotors"
                     /id="U565"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=1939
                     /SigmaFactorBS="atagatgagcttatgctttctacaagctctttTGTTTTAAaa
                     gttctctttagTCATTTATCATTATTAGAAAacagaacagaaaaagagctcctgtaca
                     c"
                     /listShort="S253"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       800944..802041
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_818976_820073"
                     /HighExp="Etha, dia5, Diami, C30, dia15, T5.0H, S8, T3.0H,
                     M0t90, LPhT"
                     /AntisenseName="yfmI"
                     /AntisenseCor="0.135213889213362"
                     /AntisenseRegPval="-1.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S253"
     upshifts        800944
                     /Source="Nicolas_upshifts"
                     /id="U565"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.993006993006993"
                     /psig="0.999000999001"
                     /xcortree=1939
                     /SigmaFactorBS="atagatgagcttatgctttctacaagctctttTGTTTTAAaa
                     gttctctttagTCATTTATCATTATTAGAAAacagaacagaaaaagagctcctgtaca
                     c"
                     /listShort="S253"
                     /GFF_Attribute="listLong"
     CDS             complement(801279..802499)
                     /gene="yfmI"
                     /locus_tag="BSU_07460"
                     /old_locus_tag="BSU07460"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388627.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07460"
                     /db_xref="EnsemblGenomes-Tr:CAB12575"
                     /db_xref="GOA:O34440"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12960"
                     /db_xref="UniProtKB/Swiss-Prot:O34440"
                     /translation="MSKGYYSILFSQTTTNLGFSLYTMVVISFLFKMTNSTTIASMVT
                     LISIIFRIFGSAILPLITIRLKLPLTIIISQLIQMLLLICLFYALLRTYSNQTLILVF
                     IIISCISFFNGWFSPLKSAIIGEIISPDRRVKANGLLSTVDQTFQFVGWSLGGLIIAF
                     LGEGYTIILTIFLLFTSLLSLLFCLPHGHANSVIREKNSPNKSIVSGWRYLFSQKKLR
                     TIIIMDLIESWAGMIWIGSVSLAFVNEVLHKGESWWGFINGAYYLGSMIGGFIIYKLS
                     ERFQNKLINFMLIGAVSYGSLTLIYGFISNSYLALILVLFMGPAYILRDLTQETLIQN
                     ITTEQTRINIMSARSSLVQFIFMFSILAIGAISDFLGVRLVYVSAGILLLVSAIYGFS
                     QLQFKKKVNKHISF*"
     gene            complement(801279..802499)
                     /gene="yfmI"
                     /locus_tag="BSU_07460"
                     /old_locus_tag="BSU07460"
     promotor_-10    complement(802536..802555)
                     /Source="Nicolas_upshift_promotors"
                     /id="U566"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.899100899100899"
                     /psig="0.996003996003996"
                     /xcortree=2925
                     /SigmaFactorBS="gtaaatagtttacaaggaaatttttTCTTTACTtttgttgtt
                     ttaaggTGTTTAAATATGTTTAAGCTctttaccgagaaaaattattccaagggaggat
                     a"
                     /listShort="yfmI, S252, yfmJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(802543)
                     /Source="Nicolas_upshifts"
                     /id="U566"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.899100899100899"
                     /psig="0.996003996003996"
                     /xcortree=2925
                     /SigmaFactorBS="gtaaatagtttacaaggaaatttttTCTTTACTtttgttgtt
                     ttaaggTGTTTAAATATGTTTAAGCTctttaccgagaaaaattattccaagggaggat
                     a"
                     /listShort="yfmI, S252, yfmJ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(802571..802578)
                     /Source="Nicolas_upshift_promotors"
                     /id="U566"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.899100899100899"
                     /psig="0.996003996003996"
                     /xcortree=2925
                     /SigmaFactorBS="gtaaatagtttacaaggaaatttttTCTTTACTtttgttgtt
                     ttaaggTGTTTAAATATGTTTAAGCTctttaccgagaaaaattattccaagggaggat
                     a"
                     /listShort="yfmI, S252, yfmJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    802597..802604
                     /Source="Nicolas_upshift_promotors"
                     /id="U567"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=480
                     /SigmaFactorBS="ccttaaaacaacaaaagtaaagaaaaaatttccttgtaaacT
                     ATTTACTtttattctatttatTGTTATTGTTTATTTAAGTTctctgactattctatca
                     a"
                     /listShort="S254, yfmG, S256, S257, S258, S259, yfmA,
                     yflT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       802616..802791
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_820648_820823"
                     /HighExp="LoTm, T-1.10H, T-0.40H, S3, M9-stat, T0.0H,
                     T-1.40H, BC, T2.0H, T5.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.98260400000000003"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S254"
     upshifts        802616
                     /Source="Nicolas_upshifts"
                     /id="U567"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=480
                     /SigmaFactorBS="ccttaaaacaacaaaagtaaagaaaaaatttccttgtaaacT
                     ATTTACTtttattctatttatTGTTATTGTTTATTTAAGTTctctgactattctatca
                     a"
                     /listShort="S254, yfmG, S256, S257, S258, S259, yfmA,
                     yflT"
                     /GFF_Attribute="listLong"
     promotor_-10    802619..802638
                     /Source="Nicolas_upshift_promotors"
                     /id="U567"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96903096903097"
                     /psig=1
                     /xcortree=480
                     /SigmaFactorBS="ccttaaaacaacaaaagtaaagaaaaaatttccttgtaaacT
                     ATTTACTtttattctatttatTGTTATTGTTTATTTAAGTTctctgactattctatca
                     a"
                     /listShort="S254, yfmG, S256, S257, S258, S259, yfmA,
                     yflT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      802748
                     /Source="Nicolas_upshifts"
                     /id="D373"
                     /incds=0
                     /nref=34
                     /ntot=117
                     /MaxReadThrough="8.67835"
                     /MaxDrop="8.45742"
                     /score="4.02328636"
                     /energy="-13.7"
                     /TU="U567"
                     /idTUdmin="U565"
                     /TUdmin=748
                     /isTUend="FALSE"
     CDS             802835..804298
                     /gene="yfmG"
                     /locus_tag="BSU_07480"
                     /old_locus_tag="BSU07480"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_388629.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07480"
                     /db_xref="EnsemblGenomes-Tr:CAB12577"
                     /db_xref="InterPro:IPR005532"
                     /db_xref="InterPro:IPR016187"
                     /db_xref="SubtiList:BG12958"
                     /db_xref="UniProtKB/Swiss-Prot:O34722"
                     /translation="MTLLMQDHKSIYNKDIEILIEVEELITSVPENKKNDFKSLIDNR
                     IMTLLNKIQHPVAAENVFGMCIAYPNTYIRYRLIDFVEKWVPYFSAVETIINLTQDPD
                     DLVSFKAMDVCANHKIEESVAYLSSIIDDVRESISYPKKPVGLGAQKVLSTLLDIFGV
                     EKHEELVMLKNYFDQNGILPNNFDFEEKIPQSLIEEFEKTEEDGMILIPGGFFEFGLN
                     ENEIPDKTFNWKDAVPRQKVWLPPFFIDKYPVTNKDYDIFTEFIEENGHIFCHPNEPQ
                     NKQHRRNTYWDDRYLDNHPVTGIDFYDAFAYARYKGKELPTEFQWEKAARGEKGNVWP
                     WGDKFDPAKVQYAGSLYNEPITSLKSWRENLLKAHADKELNHLTSDIFEQNGESPYGV
                     CGMIGGTWEWTRSELKTKRAFHPIFENVPFNSVNSFAVLKGGSFFSHPGLMFPSFRAK
                     DIPFCRHNEMGIRCVKNIPVYKIRESINGPITNKAIY*"
     gene            802835..804298
                     /gene="yfmG"
                     /locus_tag="BSU_07480"
                     /old_locus_tag="BSU07480"
     S_feature       complement(803200..804870)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_821232_822902_c"
                     /HighExp="H2O2, C30, Salt, Lbstat, dia15, LPhT, dia5,
                     Paraq, HiOs, Diami"
                     /AntisenseName="yfmG"
                     /AntisenseCor="-0.58045119682782798"
                     /AntisenseRegPval="-24.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.996"
                     /label="S255"
     S_feature       804299..804792
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_822331_822824"
                     /HighExp="LoTm, T0.0H, T-1.40H, T-0.40H, T-2.40H, T-1.10H,
                     Pyr, T-3.40H, SMMPr, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S256"
     promotor_-35    804780..804785
                     /Source="Nicolas_upshift_promotors"
                     /id="U568"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.982017982017982"
                     /psig="0.982017982017982"
                     /xcortree=758
                     /SigmaFactorBS="aaaagagtatctcgtatagaacataagaagaatgacgagttt
                     tttaAGATTAtcatcaattatgtgaGAATAAAATATTATAAGGGaaaatgaaggctgt
                     c"
                     /listShort="S257"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       804794..808059
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_822826_826091"
                     /HighExp="LoTm, Pyr, B36, T3.30H, T2.0H, T-0.40H, T2.30H,
                     B60, T4.0H, T3.0H"
                     /AntisenseName="yfmE"
                     /AntisenseCor="-0.61640022790163695"
                     /AntisenseRegPval="-28.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigA"
                     /TUshortPSig="0.982, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S257"
     upshifts        804794
                     /Source="Nicolas_upshifts"
                     /id="U568"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.982017982017982"
                     /psig="0.982017982017982"
                     /xcortree=758
                     /SigmaFactorBS="aaaagagtatctcgtatagaacataagaagaatgacgagttt
                     tttaAGATTAtcatcaattatgtgaGAATAAAATATTATAAGGGaaaatgaaggctgt
                     c"
                     /listShort="S257"
                     /GFF_Attribute="listLong"
     promotor_-10    804801..804819
                     /Source="Nicolas_upshift_promotors"
                     /id="U568"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.982017982017982"
                     /psig="0.982017982017982"
                     /xcortree=758
                     /SigmaFactorBS="aaaagagtatctcgtatagaacataagaagaatgacgagttt
                     tttaAGATTAtcatcaattatgtgaGAATAAAATATTATAAGGGaaaatgaaggctgt
                     c"
                     /listShort="S257"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             complement(804871..805671)
                     /gene="fecF"
                     /locus_tag="BSU_07490"
                     /old_locus_tag="BSU07490"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:16672620, 22194458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16672620, 22194458;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_388630.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07490"
                     /db_xref="EnsemblGenomes-Tr:CAB12578"
                     /db_xref="GOA:O34510"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12957"
                     /db_xref="UniProtKB/Swiss-Prot:O34510"
                     /translation="MGKLAADQLTLSYDSTVIIDGVDLKIEEGKITALIGANGCGKST
                     ILKSLARLMAPKSGTVLLEGKDIHRQPSKEVAKKLAILPQSPQAPEGLTVEELCYFGR
                     HPHKKLLSKHTQEDHDMVEWALEATGMIELKDRTLDALSGGQRQRAWISMALAQGTDL
                     LLLDEPTTYLDISHQIEVLELLKKLNRDHGRTVVMVLHDLNQAAQYADYLISVLDGKI
                     YNAGTPEDVFTQPFFREVFGLECCIMRSPIDQKPMCLPTGLCPKLRAK*"
     gene            complement(804871..805671)
                     /gene="fecF"
                     /locus_tag="BSU_07490"
                     /old_locus_tag="BSU07490"
     CDS             complement(805684..806685)
                     /gene="fecE"
                     /locus_tag="BSU_07500"
                     /old_locus_tag="BSU07500"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16672620, 16850406, 22194458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16672620,
                     16850406, 22194458; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter (permease)"
                     /protein_id="NP_388631.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07500"
                     /db_xref="EnsemblGenomes-Tr:CAB12579"
                     /db_xref="GOA:O34832"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12956"
                     /db_xref="UniProtKB/Swiss-Prot:O34832"
                     /translation="MKKTTRKQKRPLLAILILAVILIVLSVISIGIGALYISPDAVVT
                     NLLGLDHSFEFIIQQYRLPRIILAILAGAGLAAAGAILQGVIRNPLASPDVVGISKGS
                     GLAAMAVILIFPESPVYVLPFSAFAGAAIIAVLLLMIARKKSIQPSSLALSGIALGAV
                     CHAGMQYMMVKFPGDVNAALIWLTGSLWGRNWEEVKLLAPWLLILFPIVCILIPKLDL
                     MSLGDELAQGLGENANRLRFILIFTAVALAGSCVAVVGSIGFIGLLAPHIARRLTGEK
                     AKYLLPASALIGAIILLIADTLGRGIMPPVEIPAGILTAVIGAPYFLYLLKFEARKQ*
                     "
     gene            complement(805684..806685)
                     /gene="fecE"
                     /locus_tag="BSU_07500"
                     /old_locus_tag="BSU07500"
     promotor_-10    complement(806271..806290)
                     /Source="Nicolas_upshift_promotors"
                     /id="U569"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2068
                     /SigmaFactorBS="gagtcgccggtatacgtgcttccgttctccgCATTTGCCgga
                     gccgccattatTGCTGTACTATTATTAATGAtagcccgaaaaaagagcattcagccct
                     c"
                     /listShort="yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(806283)
                     /Source="Nicolas_upshifts"
                     /id="U569"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2068
                     /SigmaFactorBS="gagtcgccggtatacgtgcttccgttctccgCATTTGCCgga
                     gccgccattatTGCTGTACTATTATTAATGAtagcccgaaaaaagagcattcagccct
                     c"
                     /listShort="yfmF, S255"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(806305..806312)
                     /Source="Nicolas_upshift_promotors"
                     /id="U569"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2068
                     /SigmaFactorBS="gagtcgccggtatacgtgcttccgttctccgCATTTGCCgga
                     gccgccattatTGCTGTACTATTATTAATGAtagcccgaaaaaagagcattcagccct
                     c"
                     /listShort="yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(806682..807683)
                     /gene="fecD"
                     /locus_tag="BSU_07510"
                     /old_locus_tag="BSU07510"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16672620, 16850406, 22194458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16672620, 16850406, 22194458; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter (permease)"
                     /protein_id="NP_388632.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07510"
                     /db_xref="EnsemblGenomes-Tr:CAB12580"
                     /db_xref="GOA:O34933"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12955"
                     /db_xref="UniProtKB/Swiss-Prot:O34933"
                     /translation="MYHSAKRRSSSRLMMFIIALIIFIFGLGLNLSVGASDISIIDSL
                     KYLFVWDGSKEQLIISTLRLPRTLIGVFVGASLAVAGALMQAMTRNPLASPQIFGVNA
                     GASLFVVASLVILPASPYSSVIFAFAGAAAGGAIVYMIASSGGMTPVKLALSGMAVHL
                     FLSSMTQAIIILNESGEDVLYWMTGAIDGSNWQDVITIAPFSVIGIGLALVFSGSVSV
                     LGLGDETAKGLGQNMNGIRILISLIILILSGASVAVAGPIGFVGLLVPHIVRKLIGEH
                     YQYVLPFSALFGAILLVYADVLARWIAFPYESPVGIVTAIIGTPFFLYLARKGRNLK*
                     "
     gene            complement(806682..807683)
                     /gene="fecD"
                     /locus_tag="BSU_07510"
                     /old_locus_tag="BSU07510"
     misc_feature    complement(807753..807772)
                     /Source="Nicolas_upshift_promotors"
                     /id="U570"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.664335664335664"
                     /psig="0.701298701298701"
                     /xcortree=1492
                     /SigmaFactorBS="acacttggacaagattcagaggcatcaagtctagtgaaacaa
                     gcgccaaagatgtgcttaaaAAAGTGTATAATAAATAGGAcaaatgagaagcgagggg
                     a"
                     /listShort="yfmD"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             complement(807755..808702)
                     /gene="fecC"
                     /locus_tag="BSU_07520"
                     /old_locus_tag="BSU07520"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16672620, 16850406, 22194458"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16672620, 16850406, 22194458; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter (binding
                     lipoprotein)"
                     /protein_id="NP_388633.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07520"
                     /db_xref="EnsemblGenomes-Tr:CAB12581"
                     /db_xref="GOA:O34348"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="SubtiList:BG12954"
                     /db_xref="UniProtKB/Swiss-Prot:O34348"
                     /translation="MRTYSNKLIAIMSVLLLACLIVSGCSSSQNNNGSGKSESKDSRV
                     IHDEEGKTTVSGTPKRVVVLELSFLDAVHNLGITPVGIADDNKKDMIKKLVGSSIDYT
                     SVGTRSEPNLEVISSLKPDLIIADAERHKNIYKQLKKIAPTIELKSREATYDETIDSF
                     TTIAKALNKEDEGKEKLAEHKKVINDLKAELPKDENRNIVLGVARADSFQLHTSSSYD
                     GEIFKMLGFTHAVKSDNAYQEVSLEQLSKIDPDILFISANEGKTIVDEWKTNPLWKNL
                     KAVKNGQVYDADRDTWTRFRGIKSSETSAKDVLKKVYNK*"
     gene            complement(807755..808702)
                     /gene="fecC"
                     /locus_tag="BSU_07520"
                     /old_locus_tag="BSU07520"
     downshifts      complement(807774)
                     /Source="Nicolas_upshifts"
                     /id="D374"
                     /incds=0
                     /nref=41
                     /ntot=211
                     /MaxReadThrough="4.92983"
                     /MaxDrop="4.53674"
                     /score="-3.64310934"
                     /energy="-13.9"
                     /TU="U570,U573,U574"
                     /idTUdmin="U570"
                     /TUdmin="-198"
                     /isTUend="FALSE"
     upshifts        complement(807774)
                     /Source="Nicolas_upshifts"
                     /id="U570"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.664335664335664"
                     /psig="0.701298701298701"
                     /xcortree=1492
                     /SigmaFactorBS="acacttggacaagattcagaggcatcaagtctagtgaaacaa
                     gcgccaaagatgtgcttaaaAAAGTGTATAATAAATAGGAcaaatgagaagcgagggg
                     a"
                     /listShort="yfmD"
                     /GFF_Attribute="listLong"
     promotor_-35    808029..808034
                     /Source="Nicolas_upshift_promotors"
                     /id="U571"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1066
                     /SigmaFactorBS="atctgacttcacagcgtgtgtaaagcctAGCATTttaaagat
                     ttctccgTCATAGGATGATGATGTATgaagctggaaggaatccgctcttgcaacgccg
                     a"
                     /listShort="S258, S259"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    808050..808068
                     /Source="Nicolas_upshift_promotors"
                     /id="U571"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1066
                     /SigmaFactorBS="atctgacttcacagcgtgtgtaaagcctAGCATTttaaagat
                     ttctccgTCATAGGATGATGATGTATgaagctggaaggaatccgctcttgcaacgccg
                     a"
                     /listShort="S258, S259"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       808061..808686
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_826093_826718"
                     /HighExp="LoTm, B36, S5, S6, S4, S7, S8, S3, BT, B60"
                     /AntisenseName="yfmC"
                     /AntisenseCor="-0.52042999587715499"
                     /AntisenseRegPval="-19.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigA"
                     /TUshortPSig="0.997, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S258"
     upshifts        808061
                     /Source="Nicolas_upshifts"
                     /id="U571"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1066
                     /SigmaFactorBS="atctgacttcacagcgtgtgtaaagcctAGCATTttaaagat
                     ttctccgTCATAGGATGATGATGTATgaagctggaaggaatccgctcttgcaacgccg
                     a"
                     /listShort="S258, S259"
                     /GFF_Attribute="listLong"
     misc_feature    808682..808701
                     /Source="Nicolas_upshift_promotors"
                     /id="U572"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.905094905094905"
                     /psig="0.997002997002997"
                     /xcortree=1855
                     /SigmaFactorBS="acagccggatacaatgaggcaggcgagcaataaaacactcat
                     gatggcaatcaaCTTGTTAGAATAGGTGCGCAtgtcattcttccttttttcagattta
                     g"
                     /listShort="S259"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       808688..809219
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_826720_827251"
                     /HighExp="LoTm, B36, S5, S4, S7, S6, S8, B60, S3, BT"
                     /AntisenseName="yfmB"
                     /AntisenseCor="-6.4915194654100006E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF, SigA"
                     /TUshortPSig="0.997, 0.997, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S259"
     upshifts        808688
                     /Source="Nicolas_upshifts"
                     /id="U572"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.905094905094905"
                     /psig="0.997002997002997"
                     /xcortree=1855
                     /SigmaFactorBS="acagccggatacaatgaggcaggcgagcaataaaacactcat
                     gatggcaatcaaCTTGTTAGAATAGGTGCGCAtgtcattcttccttttttcagattta
                     g"
                     /listShort="S259"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(808744..808763)
                     /Source="Nicolas_upshift_promotors"
                     /id="U573"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.645354645354645"
                     /psig=1
                     /xcortree=2102
                     /SigmaFactorBS="aaaacgcagctttctttactaaaaaaaTATTGACAtgataag
                     ccatgcTATTATAGTGTTACATGTGAtaatgattctcattactaaatctgaaaaaagg
                     a"
                     /listShort="yfmC, yfmD, yfmE, yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(808751)
                     /Source="Nicolas_upshifts"
                     /id="U573"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.645354645354645"
                     /psig=1
                     /xcortree=2102
                     /SigmaFactorBS="aaaacgcagctttctttactaaaaaaaTATTGACAtgataag
                     ccatgcTATTATAGTGTTACATGTGAtaatgattctcattactaaatctgaaaaaagg
                     a"
                     /listShort="yfmC, yfmD, yfmE, yfmF, S255"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(808777..808784)
                     /Source="Nicolas_upshift_promotors"
                     /id="U573"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.645354645354645"
                     /psig=1
                     /xcortree=2102
                     /SigmaFactorBS="aaaacgcagctttctttactaaaaaaaTATTGACAtgataag
                     ccatgcTATTATAGTGTTACATGTGAtaatgattctcattactaaatctgaaaaaagg
                     a"
                     /listShort="yfmC, yfmD, yfmE, yfmF, S255"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(808811..809179)
                     /gene="yfmB"
                     /locus_tag="BSU_07530"
                     /old_locus_tag="BSU07530"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 25651892"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388634.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07530"
                     /db_xref="EnsemblGenomes-Tr:CAB12582"
                     /db_xref="InterPro:IPR021579"
                     /db_xref="PDB:2EUC"
                     /db_xref="SubtiList:BG12953"
                     /db_xref="UniProtKB/Swiss-Prot:O34626"
                     /translation="MQYFSPEQQYNAWIVSDLVKQIFHKRAGCSPGIHELAVFAEEHF
                     HIDIDFVFSIIMNIGDIEFALTDEIEKKLSGYLSTLLPYVTADMFETSKANAHAFLSR
                     RHGNAAYHLFVSDDAFMRKQ*"
     gene            complement(808811..809179)
                     /gene="yfmB"
                     /locus_tag="BSU_07530"
                     /old_locus_tag="BSU07530"
     S_feature       complement(809180..809292)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_827212_827324_c"
                     /HighExp="Etha, BC, Sw, M9-stat, T3.30H, T1.30H, T3.0H,
                     T5.0H, T2.30H, T2.0H"
                     /AntisenseName="yfmA"
                     /AntisenseCor="5.8024036419347599E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S260"
     promotor_-10    complement(809281..809300)
                     /Source="Nicolas_upshift_promotors"
                     /id="U574"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig="0.996003996003996"
                     /xcortree=128
                     /SigmaFactorBS="gaacattgaagagaaaaacaggaggaatggtagTAGCTATTt
                     gttttccgtcCATGGTAAAGTGATAGGAACgggacctattttcagaaaaatcaaaatt
                     a"
                     /listShort="S260, yfmB, yfmC, yfmD"
                     /listLong="yfmE, yfmF, S255"
                     /label="promotor_-10"
     upshifts        complement(809292)
                     /Source="Nicolas_upshifts"
                     /id="U574"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig="0.996003996003996"
                     /xcortree=128
                     /SigmaFactorBS="gaacattgaagagaaaaacaggaggaatggtagTAGCTATTt
                     gttttccgtcCATGGTAAAGTGATAGGAACgggacctattttcagaaaaatcaaaatt
                     a"
                     /listShort="S260, yfmB, yfmC, yfmD"
                     /listLong="yfmE, yfmF, S255"
     promotor_-35    complement(809312..809319)
                     /Source="Nicolas_upshift_promotors"
                     /id="U574"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig="0.996003996003996"
                     /xcortree=128
                     /SigmaFactorBS="gaacattgaagagaaaaacaggaggaatggtagTAGCTATTt
                     gttttccgtcCATGGTAAAGTGATAGGAACgggacctattttcagaaaaatcaaaatt
                     a"
                     /listShort="S260, yfmB, yfmC, yfmD"
                     /listLong="yfmE, yfmF, S255"
                     /label="promotor_-35"
     promotor_-35    809360..809366
                     /Source="Nicolas_upshift_promotors"
                     /id="U575"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=221
                     /SigmaFactorBS="ctaccattcctcctgtttttctcttcaatgttctggaatcTG
                     TTTCAggtacagacgatcGGGTATGAAAGAAATATAGaaaacatgaaggaggaatatc
                     g"
                     /listShort="yflT, S261, pel, yflS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    809380..809398
                     /Source="Nicolas_upshift_promotors"
                     /id="U575"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=221
                     /SigmaFactorBS="ctaccattcctcctgtttttctcttcaatgttctggaatcTG
                     TTTCAggtacagacgatcGGGTATGAAAGAAATATAGaaaacatgaaggaggaatatc
                     g"
                     /listShort="yflT, S261, pel, yflS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        809380
                     /Source="Nicolas_upshifts"
                     /id="U575"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=221
                     /SigmaFactorBS="ctaccattcctcctgtttttctcttcaatgttctggaatcTG
                     TTTCAggtacagacgatcGGGTATGAAAGAAATATAGaaaacatgaaggaggaatatc
                     g"
                     /listShort="yflT, S261, pel, yflS"
                     /GFF_Attribute="listLong"
     CDS             809423..809770
                     /gene="yflT"
                     /locus_tag="BSU_07550"
                     /old_locus_tag="BSU07550"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 12089032; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="heat stress induced protein"
                     /protein_id="NP_388636.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07550"
                     /db_xref="EnsemblGenomes-Tr:CAB12584"
                     /db_xref="InterPro:IPR025889"
                     /db_xref="SubtiList:BG19020"
                     /db_xref="UniProtKB/Swiss-Prot:P80241"
                     /translation="MKPVVKEYTNDEQLMKDVEELQKMGVAKEDVYVLAHDDDRTERL
                     ADNTNANTIGAKETGFKHAVGNIFNKKGDELRNKIHEIGFSEDEAAQFEKRLDEGKVL
                     LFVTDNEKVKAWA*"
     gene            809423..809770
                     /gene="yflT"
                     /locus_tag="BSU_07550"
                     /old_locus_tag="BSU07550"
     downshifts      complement(809424)
                     /Source="Nicolas_upshifts"
                     /id="D375"
                     /incds=0
                     /nref=6
                     /ntot=28
                     /MaxReadThrough="1.00082"
                     /MaxDrop="4.87687"
                     /score="-3.31058364"
                     /energy="-3.6"
                     /TU="NA"
                     /idTUdmin="U570"
                     /TUdmin="-1848"
                     /isTUend="FALSE"
     downshifts      809766
                     /Source="Nicolas_upshifts"
                     /id="D376"
                     /incds=0
                     /nref=56
                     /ntot=197
                     /MaxReadThrough="6.41566"
                     /MaxDrop="7.61596"
                     /score="-1.88723414"
                     /energy="-5.6"
                     /TU="U575"
                     /idTUdmin="U567"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       809811..809891
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_827843_827923"
                     /HighExp="Etha, Salt, B36, LoTm, Heat, B60, M9-stat, S8,
                     C30, LPhT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S261"
     misc_feature    809892..809911
                     /Source="Nicolas_upshift_promotors"
                     /id="U576"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig="0.972027972027972"
                     /xcortree=3242
                     /SigmaFactorBS="gattttgcagaatgccgcaataggatagcggaacattttcgg
                     ttctgaatgtccctcaaTTTGCTATTATATTTTTGTGataaattggaataaaatctca
                     c"
                     /listShort="pel"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        809893
                     /Source="Nicolas_upshifts"
                     /id="U576"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig="0.972027972027972"
                     /xcortree=3242
                     /SigmaFactorBS="gattttgcagaatgccgcaataggatagcggaacattttcgg
                     ttctgaatgtccctcaaTTTGCTATTATATTTTTGTGataaattggaataaaatctca
                     c"
                     /listShort="pel"
                     /GFF_Attribute="listLong"
     CDS             809961..811223
                     /gene="pelA"
                     /locus_tag="BSU_07560"
                     /old_locus_tag="BSU07560"
                     /EC_number="4.2.2.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8262178, 12823818, 27447541"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8262178, 12823818,
                     27447541; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pectate lyase"
                     /protein_id="NP_388637.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07560"
                     /db_xref="EnsemblGenomes-Tr:CAB12585"
                     /db_xref="GOA:P39116"
                     /db_xref="InterPro:IPR002022"
                     /db_xref="InterPro:IPR011050"
                     /db_xref="InterPro:IPR012334"
                     /db_xref="PDB:1BN8"
                     /db_xref="PDB:2BSP"
                     /db_xref="PDB:2NZM"
                     /db_xref="PDB:2O04"
                     /db_xref="PDB:2O0V"
                     /db_xref="PDB:2O0W"
                     /db_xref="PDB:2O17"
                     /db_xref="PDB:2O1D"
                     /db_xref="PDB:3KRG"
                     /db_xref="PDB:5AMV"
                     /db_xref="SubtiList:BG10840"
                     /db_xref="UniProtKB/Swiss-Prot:P39116"
                     /translation="MKKVMLATALFLGLTPAGANAADLGHQTLGSNDGWGAYSTGTTG
                     GSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDP
                     EYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAK
                     VVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWID
                     HCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSD
                     SKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIG
                     KSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGW
                     TPSLHGSIDASANVKSNVINQAGAGKLN*"
     gene            809961..811223
                     /gene="pelA"
                     /locus_tag="BSU_07560"
                     /old_locus_tag="BSU07560"
     downshifts      811218
                     /Source="Nicolas_upshifts"
                     /id="D377"
                     /incds=0
                     /nref=139
                     /ntot=203
                     /MaxReadThrough="3.61256"
                     /MaxDrop="5.92635"
                     /score="1.82127533"
                     /energy="-8.2"
                     /TU="U575,U576"
                     /idTUdmin="U576"
                     /TUdmin="-176"
                     /isTUend="FALSE"
     promotor_-35    811276..811279
                     /Source="Nicolas_upshift_promotors"
                     /id="U577"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.984015984015984"
                     /xcortree=1756
                     /SigmaFactorBS="gggtgctaacctttgtgttttttaattaattaaaATGTttat
                     taacttagttAAGGAGTAGAATGGAAAAGGggatcggaaaacaagtatataggaggag
                     a"
                     /listShort="yflS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    811294..811313
                     /Source="Nicolas_upshift_promotors"
                     /id="U577"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.984015984015984"
                     /xcortree=1756
                     /SigmaFactorBS="gggtgctaacctttgtgttttttaattaattaaaATGTttat
                     taacttagttAAGGAGTAGAATGGAAAAGGggatcggaaaacaagtatataggaggag
                     a"
                     /listShort="yflS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        811302
                     /Source="Nicolas_upshifts"
                     /id="U577"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.879120879120879"
                     /psig="0.984015984015984"
                     /xcortree=1756
                     /SigmaFactorBS="gggtgctaacctttgtgttttttaattaattaaaATGTttat
                     taacttagttAAGGAGTAGAATGGAAAAGGggatcggaaaacaagtatataggaggag
                     a"
                     /listShort="yflS"
                     /GFF_Attribute="listLong"
     CDS             811350..812786
                     /gene="maeS"
                     /locus_tag="BSU_07570"
                     /old_locus_tag="BSU07570"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12949159, 15849754, 16850406, 25651892, 28436820"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12949159, 15849754,
                     16850406, 25651892, 28436820; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="malate (2-oxoglutarate) transporter"
                     /protein_id="NP_388638.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07570"
                     /db_xref="EnsemblGenomes-Tr:CAB12586"
                     /db_xref="GOA:O34726"
                     /db_xref="InterPro:IPR001898"
                     /db_xref="InterPro:IPR030676"
                     /db_xref="SubtiList:BG12951"
                     /db_xref="UniProtKB/Swiss-Prot:O34726"
                     /translation="MASEKDAGKQSAVKLVPLLITVAVGLIIWFIPAPSGLEPKAWHL
                     FAIFVATIIGFISKPLPMGAIAIFALAVTALTGTLSIEDTLSGFGNKTIWLIVIAFFI
                     SRGFIKTGLGARISYVFVQKFGKKTLGLSYSLLFSDLILSPAIPSNTARAGGIIFPII
                     RSLSETFGSSPANGTERKIGAFLLKTGFQGNLITSAMFLTAMAANPLIAKLAHDVAGV
                     DLTWTSWAIAAIVPGLVSLIITPLVIYKLYPPEIKETPDAAKIATEKLKEMGPFKKSE
                     LSMVIVFLLVLVLWIFGGSFNIDATTTALIGLAVLLLSQVLTWDDIKKEQGAWDTLTW
                     FAALVMLANFLNELGMVSWFSNAMKSSVSGFSWIVAFIILIVVYYYSHYFFASATAHI
                     SAMYSAFLAVVVAAGAPPLLAALSLAFISNLFGSTTHYGSGAAPVFFGAGYIPQGKWW
                     SIGFILSIVHIIVWLVIGGLWWKVLGIW*"
     gene            811350..812786
                     /gene="maeS"
                     /locus_tag="BSU_07570"
                     /old_locus_tag="BSU07570"
     downshifts      812778
                     /Source="Nicolas_upshifts"
                     /id="D378"
                     /incds=0
                     /nref=56
                     /ntot=132
                     /MaxReadThrough="2.39993"
                     /MaxDrop="5.36125"
                     /score="40.3051497"
                     /energy="-9.7"
                     /TU="NA"
                     /idTUdmin="U577"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     misc_feature    812877..812896
                     /Source="Nicolas_upshift_promotors"
                     /id="U578"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.997002997002997"
                     /psig=1
                     /xcortree=2939
                     /SigmaFactorBS="tccttcgtaagaaaatggattttgaaaaatgagaaaattccc
                     tgtgaaaAATGGTATGATCTAGGTAGAaaggacggctggtgctgtggtgaaaaagcgg
                     t"
                     /listShort="citS, citT, yflP"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        812888
                     /Source="Nicolas_upshifts"
                     /id="U578"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.997002997002997"
                     /psig=1
                     /xcortree=2939
                     /SigmaFactorBS="tccttcgtaagaaaatggattttgaaaaatgagaaaattccc
                     tgtgaaaAATGGTATGATCTAGGTAGAaaggacggctggtgctgtggtgaaaaagcgg
                     t"
                     /listShort="citS, citT, yflP"
                     /GFF_Attribute="listLong"
     CDS             812913..814541
                     /gene="citS"
                     /locus_tag="BSU_07580"
                     /old_locus_tag="BSU07580"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:10972810, 11717295, 12949159, 16842348"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10972810, 11717295,
                     12949159, 16842348; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="NP_388639.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07580"
                     /db_xref="EnsemblGenomes-Tr:CAB12587"
                     /db_xref="GOA:O34427"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR016120"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="InterPro:IPR035965"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12576"
                     /db_xref="UniProtKB/Swiss-Prot:O34427"
                     /translation="MVKKRFHFSLQTKIMGLIAALLVFVIGVLTITLAVQHTQGERRQ
                     AEQLAVQTARTISYMPPVKELIERKDGHAAQTQEVIEQMKEQTGAFAIYVLNEKGDIR
                     SASGKSGLKKLERSREILFGGSHVSETKADGRRVIRGSAPIIKEQKGYSQVIGSVSVD
                     FLQTETEQSIKKHLRNLSVIAVLVLLLGFIGAAVLAKSIRKDTLGLEPHEIAALYRER
                     NAMLFAIREGIIATNREGVVTMMNVSAAEMLKLPEPVIHLPIDDVMPGAGLMSVLEKG
                     EMLPNQEVSVNDQVFIINTKVMNQGGQAYGIVVSFREKTELKKLIDTLTEVRKYSEDL
                     RAQTHEFSNKLYAILGLLELGEYDEAIDLIKEEYAIQNEQHDLLFHNIHSQQVQAILL
                     GKISKASEKKVKLVIDENSSLAPLPAHIGLSHLITIIGNLIDNAFEAVAEQSVKEVLF
                     FITDMGHDIVIEVSDTGPGVPPEKIEAVFERGYSSKGMRRGYGLANVKDSVRELGGWI
                     ELANQKTGGAVFTVFIPKEKQRGNPFDSHRDCGG*"
     gene            812913..814541
                     /gene="citS"
                     /locus_tag="BSU_07580"
                     /old_locus_tag="BSU07580"
     CDS             814513..815193
                     /gene="citT"
                     /locus_tag="BSU_07590"
                     /old_locus_tag="BSU07590"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10972810, 11717295, 12949159, 16842348"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10972810, 11717295,
                     12949159, 16842348; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator"
                     /protein_id="NP_388640.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07590"
                     /db_xref="EnsemblGenomes-Tr:CAB12588"
                     /db_xref="GOA:O34534"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR013196"
                     /db_xref="InterPro:IPR024187"
                     /db_xref="InterPro:IPR028141"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12577"
                     /db_xref="UniProtKB/Swiss-Prot:O34534"
                     /translation="MIHIAIAEDDFRVAQIHERLIKQLDGFKIIGKAANAKETLALLK
                     EHKADLLLLDIYMPDELGTALIPDIRSRFPEVDIMIITAATETRHLQEALRAGIAHYL
                     IKPVTADKFRQVLLQYKEKRKLLMSQPEVSQSMIDHIFGNGVKTALPAEDLPTGINSI
                     TLRKIKEALQTASEGLTAEELGEKMGASRTTARRYAEYLVSKEEARAELEYGIIGRPE
                     RKYYLAAD*"
     gene            814513..815193
                     /gene="citT"
                     /locus_tag="BSU_07590"
                     /old_locus_tag="BSU07590"
     CDS             815196..816155
                     /gene="yflP"
                     /locus_tag="BSU_07600"
                     /old_locus_tag="BSU07600"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11029430; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative tricarboxylate transporter component"
                     /protein_id="NP_388641.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07600"
                     /db_xref="EnsemblGenomes-Tr:CAB12589"
                     /db_xref="GOA:O34439"
                     /db_xref="InterPro:IPR005064"
                     /db_xref="SubtiList:BG12950"
                     /db_xref="UniProtKB/Swiss-Prot:O34439"
                     /translation="MKKSIILLNILLIFMQGDIRQAAAPRLPDGPIEIVVPAEPSGGW
                     DVTAQAIQSVLRQKQIVKDDVHIVYKSGGGGEKGWKYVNKSSKQTISMTSSLILSNDL
                     LGQSKLKMSDFTPLAILSKEWQTVALPKGSALTNGKDVLNEINMHPGKVRIGFAPGFG
                     NDDQLSFVRAADMYGIDPFDIQFSQYDSSEQLIQALIRHEIEAASMTLSEAKPYERNG
                     DITLAAVTSDKRLPGFPNVPTWKEQGIPFVFSHWRGILGPKNMSEEEISYWDQALKKV
                     TSSPEWKRKINEQDWESFYLNSRETKRFLEEQSAFYQSIMTGN*"
     gene            815196..816155
                     /gene="yflP"
                     /locus_tag="BSU_07600"
                     /old_locus_tag="BSU07600"
     downshifts      816124
                     /Source="Nicolas_upshifts"
                     /id="D379"
                     /incds=0
                     /nref=76
                     /ntot=211
                     /MaxReadThrough="1.1681"
                     /MaxDrop="6.31244"
                     /score="10.4510496"
                     /energy="-6.5"
                     /TU="NA"
                     /idTUdmin="U578"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    816247..816254
                     /Source="Nicolas_upshift_promotors"
                     /id="U579"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.96003996003996"
                     /xcortree=565
                     /SigmaFactorBS="aaaaaattaaaaatacaaaaaaaccaaatTATTTACTtgcgg
                     ttggtttTCCCATACGATGGCAAAAAGgcaagacaaaaaggggagtaagggagaaaaa
                     a"
                     /listShort="S262, citM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    816267..816286
                     /Source="Nicolas_upshift_promotors"
                     /id="U579"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.96003996003996"
                     /xcortree=565
                     /SigmaFactorBS="aaaaaattaaaaatacaaaaaaaccaaatTATTTACTtgcgg
                     ttggtttTCCCATACGATGGCAAAAAGgcaagacaaaaaggggagtaagggagaaaaa
                     a"
                     /listShort="S262, citM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       816278..816350
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_834310_834382"
                     /HighExp="M9-stat, SMMPr, SMM, T0.0H, LoTm, T1.0H, Pyr,
                     T1.30H, Cold, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.96"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S262"
     upshifts        816278
                     /Source="Nicolas_upshifts"
                     /id="U579"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.606393606393606"
                     /psig="0.96003996003996"
                     /xcortree=565
                     /SigmaFactorBS="aaaaaattaaaaatacaaaaaaaccaaatTATTTACTtgcgg
                     ttggtttTCCCATACGATGGCAAAAAGgcaagacaaaaaggggagtaagggagaaaaa
                     a"
                     /listShort="S262, citM"
                     /GFF_Attribute="listLong"
     CDS             816351..817652
                     /gene="citM"
                     /locus_tag="BSU_07610"
                     /old_locus_tag="BSU07610"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12427932, 12533460, 12906362, 12949159, 15849754,
                     16842348, 16850406, 24415722, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12427932, 12533460,
                     12906362, 12949159, 15849754, 16842348, 16850406,
                     24415722, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="transporter of divalent metal ions/citrate
                     complexes"
                     /protein_id="NP_388642.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07610"
                     /db_xref="EnsemblGenomes-Tr:CAB12590"
                     /db_xref="GOA:P55069"
                     /db_xref="InterPro:IPR004680"
                     /db_xref="InterPro:IPR014738"
                     /db_xref="SubtiList:BG11832"
                     /db_xref="UniProtKB/Swiss-Prot:P55069"
                     /translation="MLAILGFLMMLVFMALIMTKRLSVLTALVLTPIVFALIAGFGFT
                     EVGDMMISGIQQVAPTAVMIMFAILYFGIMIDTGLFDPMVGKILSMVKGDPLKIVVGT
                     AVLTMLVALDGDGSTTYMITTSAMLPLYLLLGIRPIILAGIAGVGMGIMNTIPWGGAT
                     PRAASALGVDPAELTGPMIPVIASGMLCMVAVAYVLGKAERKRLGVIELKQPANANEP
                     AAAVEDEWKRPKLWWFNLLLTLSLIGCLVSGKVSLTVLFVIAFCIALIVNYPNLEHQR
                     QRIAAHSSNVLAIGSMIFAAGVFTGILTGTKMVDEMAISLVSMIPEQMGGLIPAIVAL
                     TSGIFTFLMPNDAYFYGVLPILSETAVAYGVDKVEIARASIIGQPIHMLSPLVPSTHL
                     LVGLVGVSIDDHQKFALKWAVLAVIVMTAIALLIGAISISV*"
     gene            816351..817652
                     /gene="citM"
                     /locus_tag="BSU_07610"
                     /old_locus_tag="BSU07610"
     promotor_-35    817649..817655
                     /Source="Nicolas_upshift_promotors"
                     /id="U580"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=920
                     /SigmaFactorBS="ggctatcgctctattgatcggtgcgatctctatttccgtATG
                     ATAAttcaggcgtaatgACACACACTAACggcatacaacattccggaggtgtcattat
                     g"
                     /listShort="yflN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    817669..817680
                     /Source="Nicolas_upshift_promotors"
                     /id="U580"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=920
                     /SigmaFactorBS="ggctatcgctctattgatcggtgcgatctctatttccgtATG
                     ATAAttcaggcgtaatgACACACACTAACggcatacaacattccggaggtgtcattat
                     g"
                     /listShort="yflN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        817670
                     /Source="Nicolas_upshifts"
                     /id="U580"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=920
                     /SigmaFactorBS="ggctatcgctctattgatcggtgcgatctctatttccgtATG
                     ATAAttcaggcgtaatgACACACACTAACggcatacaacattccggaggtgtcattat
                     g"
                     /listShort="yflN"
                     /GFF_Attribute="listLong"
     CDS             817708..818502
                     /gene="yflN"
                     /locus_tag="BSU_07620"
                     /old_locus_tag="BSU07620"
                     /EC_number="3.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10972810, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-dependent hydrolase"
                     /protein_id="NP_388643.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07620"
                     /db_xref="EnsemblGenomes-Tr:CAB12591"
                     /db_xref="GOA:O34409"
                     /db_xref="InterPro:IPR001279"
                     /db_xref="InterPro:IPR036866"
                     /db_xref="SubtiList:BG12949"
                     /db_xref="UniProtKB/Swiss-Prot:O34409"
                     /translation="MSDPYMPLTSVRSGAGFEAAKGVHGLTVQIANVYFIQLPSEPHS
                     FVLIDAGMPQSAGVIVNEAKQRFGEGFQLKAIILTHGHFDHIGAIEEILEHWDVPVYI
                     HSREMPYVTGKEDYPPARPDSKSGLVAKLSPLFPRHSIDISSHVQALPEDGSVPFLDE
                     WMWIATPGHTPGHISLFRDDGRVLVAGDAVITVEQEKMADVLIQKQELHGPPAYFTPD
                     TETAAESILKLAGLEPEALLTGHGIPMTGKNFRSDLTELANRLSSI*"
     gene            817708..818502
                     /gene="yflN"
                     /locus_tag="BSU_07620"
                     /old_locus_tag="BSU07620"
     downshifts      818478
                     /Source="Nicolas_upshifts"
                     /id="D380"
                     /incds=0
                     /nref=2
                     /ntot=25
                     /MaxReadThrough="0.0114999999999998"
                     /MaxDrop="3.05232"
                     /score="38.3109333"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U580"
                     /TUdmin=132
                     /isTUend="FALSE"
     promotor_-35    818557..818560
                     /Source="Nicolas_upshift_promotors"
                     /id="U581"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.995004995004995"
                     /xcortree=2378
                     /SigmaFactorBS="attgttttccaggaagttgcagaaaaatcATTTgtcttgccg
                     cttaaAAACGATACAATGAAAAGCAtgaagtgatgtgaaggggagagtttgttggaag
                     a"
                     /listShort="nosA, S263, yflK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    818575..818594
                     /Source="Nicolas_upshift_promotors"
                     /id="U581"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.995004995004995"
                     /xcortree=2378
                     /SigmaFactorBS="attgttttccaggaagttgcagaaaaatcATTTgtcttgccg
                     cttaaAAACGATACAATGAAAAGCAtgaagtgatgtgaaggggagagtttgttggaag
                     a"
                     /listShort="nosA, S263, yflK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        818588
                     /Source="Nicolas_upshifts"
                     /id="U581"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.995004995004995"
                     /xcortree=2378
                     /SigmaFactorBS="attgttttccaggaagttgcagaaaaatcATTTgtcttgccg
                     cttaaAAACGATACAATGAAAAGCAtgaagtgatgtgaaggggagagtttgttggaag
                     a"
                     /listShort="nosA, S263, yflK"
                     /GFF_Attribute="listLong"
     CDS             818621..819712
                     /gene="nosA"
                     /locus_tag="BSU_07630"
                     /old_locus_tag="BSU07630"
                     /EC_number="1.14.13.39"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11856757, 12220171, 16172391, 25643072, 25826316,
                     26062720"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11856757, 12220171,
                     16172391, 25643072, 25826316, 26062720; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="nitric-oxide synthase"
                     /protein_id="NP_388644.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07630"
                     /db_xref="EnsemblGenomes-Tr:CAB12592"
                     /db_xref="GOA:O34453"
                     /db_xref="InterPro:IPR004030"
                     /db_xref="InterPro:IPR017142"
                     /db_xref="InterPro:IPR036119"
                     /db_xref="PDB:1M7V"
                     /db_xref="PDB:1M7Z"
                     /db_xref="PDB:2AMO"
                     /db_xref="PDB:2AN0"
                     /db_xref="PDB:2AN2"
                     /db_xref="PDB:2FBZ"
                     /db_xref="PDB:2FC1"
                     /db_xref="PDB:2FC2"
                     /db_xref="PDB:4D3I"
                     /db_xref="PDB:4D3J"
                     /db_xref="PDB:4D3K"
                     /db_xref="PDB:4D3M"
                     /db_xref="PDB:4D3N"
                     /db_xref="PDB:4D3O"
                     /db_xref="PDB:4D3T"
                     /db_xref="PDB:4D3U"
                     /db_xref="PDB:4D3V"
                     /db_xref="PDB:4D7H"
                     /db_xref="PDB:4D7I"
                     /db_xref="PDB:4D7J"
                     /db_xref="PDB:4LWA"
                     /db_xref="PDB:4LWB"
                     /db_xref="PDB:4UG5"
                     /db_xref="PDB:4UG6"
                     /db_xref="PDB:4UG7"
                     /db_xref="PDB:4UG8"
                     /db_xref="PDB:4UG9"
                     /db_xref="PDB:4UGA"
                     /db_xref="PDB:4UGB"
                     /db_xref="PDB:4UGC"
                     /db_xref="PDB:4UGD"
                     /db_xref="PDB:4UGE"
                     /db_xref="PDB:4UGF"
                     /db_xref="PDB:4UGG"
                     /db_xref="PDB:4UGH"
                     /db_xref="PDB:4UGI"
                     /db_xref="PDB:4UGJ"
                     /db_xref="PDB:4UGK"
                     /db_xref="PDB:4UGL"
                     /db_xref="PDB:4UGM"
                     /db_xref="PDB:4UGN"
                     /db_xref="PDB:4UGO"
                     /db_xref="PDB:4UGP"
                     /db_xref="PDB:4UGQ"
                     /db_xref="PDB:4UGR"
                     /db_xref="PDB:4UGS"
                     /db_xref="PDB:4UGT"
                     /db_xref="PDB:4UGU"
                     /db_xref="PDB:4UGV"
                     /db_xref="PDB:4UGW"
                     /db_xref="PDB:4UGX"
                     /db_xref="PDB:4UGY"
                     /db_xref="PDB:4UQR"
                     /db_xref="PDB:4UQS"
                     /db_xref="PDB:5G65"
                     /db_xref="PDB:5G66"
                     /db_xref="PDB:5G67"
                     /db_xref="PDB:5G68"
                     /db_xref="PDB:5G69"
                     /db_xref="PDB:5G6A"
                     /db_xref="PDB:5G6B"
                     /db_xref="PDB:5G6C"
                     /db_xref="PDB:5G6D"
                     /db_xref="PDB:5G6E"
                     /db_xref="PDB:5G6F"
                     /db_xref="PDB:5G6G"
                     /db_xref="PDB:5G6H"
                     /db_xref="PDB:5G6I"
                     /db_xref="PDB:5G6J"
                     /db_xref="PDB:5G6K"
                     /db_xref="PDB:5G6L"
                     /db_xref="PDB:5G6M"
                     /db_xref="PDB:5G6N"
                     /db_xref="PDB:5G6O"
                     /db_xref="PDB:5G6P"
                     /db_xref="PDB:5G6Q"
                     /db_xref="SubtiList:BG12948"
                     /db_xref="UniProtKB/Swiss-Prot:O34453"
                     /translation="MEEKEILWNEAKAFIAACYQELGKEEEVKDRLADIKSEIDLTGS
                     YVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDRRDVRTKEEVRDALFHHIETATN
                     NGKIRPTITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASCSLTAACEELGW
                     RGERTDFDLLPLIFRMKGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPII
                     SDMKLEVGGIHYNAAPFNGWYMGTEIGARNLADEKRYDKLKKVASVIGIAADYNTDLW
                     KDQALVELNKAVLHSYKKQGVSIVDHHTAASQFKRFEEQEEEAGRKLTGDWTWLIPPI
                     SPAATHIFHRSYDNSIVKPNYFYQDKPYE*"
     gene            818621..819712
                     /gene="nosA"
                     /locus_tag="BSU_07630"
                     /old_locus_tag="BSU07630"
     CDS             complement(819703..819978)
                     /gene="acyP"
                     /locus_tag="BSU_07640"
                     /old_locus_tag="BSU07640"
                     /EC_number="3.6.1.7"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:20447399"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20447399; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="NP_388645.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07640"
                     /db_xref="EnsemblGenomes-Tr:CAB12593"
                     /db_xref="GOA:O35031"
                     /db_xref="InterPro:IPR001792"
                     /db_xref="InterPro:IPR017968"
                     /db_xref="InterPro:IPR020456"
                     /db_xref="InterPro:IPR036046"
                     /db_xref="PDB:2FHM"
                     /db_xref="PDB:2HLT"
                     /db_xref="PDB:2HLU"
                     /db_xref="PDB:3BR8"
                     /db_xref="SubtiList:BG12947"
                     /db_xref="UniProtKB/Swiss-Prot:O35031"
                     /translation="MLQYRIIVDGRVQGVGFRYFVQMEADKRKLAGWVKNRDDGRVEI
                     LAEGPENALQSFVEAVKNGSPFSKVTDISVTESRSLEGHHRFSIVYS*"
     gene            complement(819703..819978)
                     /gene="acyP"
                     /locus_tag="BSU_07640"
                     /old_locus_tag="BSU07640"
     S_feature       819713..820044
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_837745_838076"
                     /HighExp="C90, BI, Paraq, LBGexp, Oxctl, M0t45, G150,
                     M40t45, G135, H2O2"
                     /AntisenseName="yflL"
                     /AntisenseCor="0.38657275217332299"
                     /AntisenseRegPval="-10.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S263"
     promotor_-10    complement(819992..820011)
                     /Source="Nicolas_upshift_promotors"
                     /id="U582"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.998001998001998"
                     /xcortree=3152
                     /SigmaFactorBS="ctgaatagcgctcttgtttcatacaaacacatcCCCTTTACa
                     ggttgtaaaatgaTTGATTATCATAAAAAGAAAaggtggtttttacatgcttcaatac
                     c"
                     /listShort="yflL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(820006)
                     /Source="Nicolas_upshifts"
                     /id="U582"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.998001998001998"
                     /xcortree=3152
                     /SigmaFactorBS="ctgaatagcgctcttgtttcatacaaacacatcCCCTTTACa
                     ggttgtaaaatgaTTGATTATCATAAAAAGAAAaggtggtttttacatgcttcaatac
                     c"
                     /listShort="yflL"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(820026..820033)
                     /Source="Nicolas_upshift_promotors"
                     /id="U582"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.818181818181818"
                     /psig="0.998001998001998"
                     /xcortree=3152
                     /SigmaFactorBS="ctgaatagcgctcttgtttcatacaaacacatcCCCTTTACa
                     ggttgtaaaatgaTTGATTATCATAAAAAGAAAaggtggtttttacatgcttcaatac
                     c"
                     /listShort="yflL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             820045..820710
                     /gene="yflK"
                     /locus_tag="BSU_07650"
                     /old_locus_tag="BSU07650"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11886751; Product type
                     c: carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfur carrier"
                     /protein_id="NP_388646.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07650"
                     /db_xref="EnsemblGenomes-Tr:CAB12594"
                     /db_xref="GOA:O34542"
                     /db_xref="InterPro:IPR005163"
                     /db_xref="InterPro:IPR005302"
                     /db_xref="InterPro:IPR011037"
                     /db_xref="SubtiList:BG12946"
                     /db_xref="UniProtKB/Swiss-Prot:O34542"
                     /translation="MKQERYSVLSLNLGKPQTLEYDGKKIETGIMKRPAKSAVMLYRE
                     NFEGDGQADLVNHGGPDKAVCVYPAEHYPFWEEFLSRPLSNAAFGENLTVAGLTEENV
                     CIGDVFRLDEAVVQVSQPRQPCVKLAKKFGVKEMVLKVQQTGYTGFYFRVLEEGRVSP
                     GANLELLSRGEKGISVQFANRINYHDAKNLTAIERILSEAALSESWRASFMKKKDRLL
                     PVE*"
     gene            820045..820710
                     /gene="yflK"
                     /locus_tag="BSU_07650"
                     /old_locus_tag="BSU07650"
     CDS             complement(820751..820888)
                     /gene="yflJ"
                     /locus_tag="BSU_07660"
                     /old_locus_tag="BSU07660"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388647.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07660"
                     /db_xref="EnsemblGenomes-Tr:CAB12595"
                     /db_xref="InterPro:IPR022580"
                     /db_xref="SubtiList:BG12945"
                     /db_xref="UniProtKB/Swiss-Prot:O34345"
                     /translation="MHYGSKGWYVAELKKQGITHHEGRKLQSYKTYFLANLLESKKKQ
                     S*"
     gene            complement(820751..820888)
                     /gene="yflJ"
                     /locus_tag="BSU_07660"
                     /old_locus_tag="BSU07660"
     downshifts      complement(820765)
                     /Source="Nicolas_upshifts"
                     /id="D381"
                     /incds=0
                     /nref=136
                     /ntot=260
                     /MaxReadThrough="0.0927600000000002"
                     /MaxDrop="8.10929"
                     /score="29.8336543"
                     /energy="-14.8"
                     /TU="NA"
                     /idTUdmin="U583"
                     /TUdmin="-11"
                     /isTUend="TRUE"
     S_feature       complement(820889..821019)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_838921_839051_c"
                     /HighExp="S4, S7, S8, S6, S5, S3, B36, BT, LoTm, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigA"
                     /TUshortPSig="0.967, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S264"
     promotor_-10    complement(821005..821023)
                     /Source="Nicolas_upshift_promotors"
                     /id="U583"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.967032967032967"
                     /psig="0.967032967032967"
                     /xcortree=1134
                     /SigmaFactorBS="ttggcgttgtcatgatcaaactaaccggccattaaATCATAt
                     tcggcttttgctccGCATATACATTCAGAAGAAcattcgtacatctagtgcgaaaggc
                     t"
                     /listShort="S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    821015..821020
                     /Source="Nicolas_upshift_promotors"
                     /id="U584"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1109
                     /SigmaFactorBS="gaaaactgagcctttcgcactagatgtacgaatgttcttctg
                     aaTGTATAtgcggagcaaaagccGAATATGATTTAATGGCCGgttagtttgatcatga
                     c"
                     /listShort="S265"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(821019)
                     /Source="Nicolas_upshifts"
                     /id="U583"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.967032967032967"
                     /psig="0.967032967032967"
                     /xcortree=1134
                     /SigmaFactorBS="ttggcgttgtcatgatcaaactaaccggccattaaATCATAt
                     tcggcttttgctccGCATATACATTCAGAAGAAcattcgtacatctagtgcgaaaggc
                     t"
                     /listShort="S264, yflJ"
                     /GFF_Attribute="listLong"
     S_feature       821030..822094
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_839062_840126"
                     /HighExp="S8, S6, S5, S7, S4, S3, BT, B36, C90, T5.0H"
                     /AntisenseName="mapB"
                     /AntisenseCor="-0.26446079057314398"
                     /AntisenseRegPval="-5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S265"
     upshifts        821031
                     /Source="Nicolas_upshifts"
                     /id="U584"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1109
                     /SigmaFactorBS="gaaaactgagcctttcgcactagatgtacgaatgttcttctg
                     aaTGTATAtgcggagcaaaagccGAATATGATTTAATGGCCGgttagtttgatcatga
                     c"
                     /listShort="S265"
                     /GFF_Attribute="listLong"
     promotor_-10    821036..821054
                     /Source="Nicolas_upshift_promotors"
                     /id="U584"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1109
                     /SigmaFactorBS="gaaaactgagcctttcgcactagatgtacgaatgttcttctg
                     aaTGTATAtgcggagcaaaagccGAATATGATTTAATGGCCGgttagtttgatcatga
                     c"
                     /listShort="S265"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(821039..821044)
                     /Source="Nicolas_upshift_promotors"
                     /id="U583"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.967032967032967"
                     /psig="0.967032967032967"
                     /xcortree=1134
                     /SigmaFactorBS="ttggcgttgtcatgatcaaactaaccggccattaaATCATAt
                     tcggcttttgctccGCATATACATTCAGAAGAAcattcgtacatctagtgcgaaaggc
                     t"
                     /listShort="S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(821045..821200)
                     /gene="yflI"
                     /locus_tag="BSU_07670"
                     /old_locus_tag="BSU07670"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein"
                     /protein_id="NP_388648.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07670"
                     /db_xref="EnsemblGenomes-Tr:CAB12596"
                     /db_xref="GOA:O34905"
                     /db_xref="SubtiList:BG12944"
                     /db_xref="UniProtKB/Swiss-Prot:O34905"
                     /translation="MWFIIFGIIFFIEGIIMTVYGVKKKNGMLTYIGIVFAIMTFGVV
                     MIKLTGH*"
     gene            complement(821045..821200)
                     /gene="yflI"
                     /locus_tag="BSU_07670"
                     /old_locus_tag="BSU07670"
     S_feature       complement(821201..821306)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_839233_839338_c"
                     /HighExp="Etha, Salt, Diami, dia15, H2O2, Cold, G135,
                     Paraq, LPhT, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S266"
     CDS             complement(821307..821621)
                     /gene="yflH"
                     /locus_tag="BSU_07680"
                     /old_locus_tag="BSU07680"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 1070366, 1266368;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_388649.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07680"
                     /db_xref="EnsemblGenomes-Tr:CAB12597"
                     /db_xref="InterPro:IPR021637"
                     /db_xref="PDB:3D0W"
                     /db_xref="SubtiList:BG12943"
                     /db_xref="UniProtKB/Swiss-Prot:O34306"
                     /translation="MNRDQEKIQIENEMNAMHGTIKEDILKDFEEFKGYLKKQVNRGK
                     KLGLDDGKLVKSAAILGDYLAKHEEPQNGEEMLLQELWSVADEDEKEHLAQLLVKLVD
                     KQ*"
     gene            complement(821307..821621)
                     /gene="yflH"
                     /locus_tag="BSU_07680"
                     /old_locus_tag="BSU07680"
     S_feature       complement(821622..821702)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_839654_839734_c"
                     /HighExp="dia5, dia15, Diami, LBGtran, LPhT, H2O2, Etha,
                     Lbtran, M40t45, M40t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigK"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S267"
     CDS             complement(821703..822452)
                     /gene="mapB"
                     /locus_tag="BSU_07690"
                     /old_locus_tag="BSU07690"
                     /EC_number="3.4.11.18"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16207374"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16207374; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine aminopeptidase B"
                     /protein_id="NP_388650.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07690"
                     /db_xref="EnsemblGenomes-Tr:CAB12598"
                     /db_xref="GOA:O34484"
                     /db_xref="InterPro:IPR000994"
                     /db_xref="InterPro:IPR001714"
                     /db_xref="InterPro:IPR002467"
                     /db_xref="InterPro:IPR036005"
                     /db_xref="SubtiList:BG12942"
                     /db_xref="UniProtKB/Swiss-Prot:O34484"
                     /translation="MIVTNDQELEGLKKIGRIVALAREEMKRKAEPGMSTKDLDLIGK
                     AVLDEHGAVSAPEKEYDFPGVTCISVNDEVAHGIPSTSKILKAGDLVNIDISAEFGGF
                     YSDTGISFVLGEGEERLHKLCQCAENAFQKGLQQAKAGKRQNQIGRAVYHEARSQGFT
                     VIKTLTGHGIGRSLHEAPNHIMNYYDPFDNALFKNGTVIALEPFISTKAETIVEAGDG
                     WTFKTPDKSMVAQVEHTIVITKDEPIILTKL*"
     gene            complement(821703..822452)
                     /gene="mapB"
                     /locus_tag="BSU_07690"
                     /old_locus_tag="BSU07690"
     promotor_-10    complement(822481..822500)
                     /Source="Nicolas_upshift_promotors"
                     /id="U585"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1950
                     /SigmaFactorBS="cccgggggtatttcttttttcccaggtccgtgtgTTTCCTAT
                     TtttaagacagtTGTGGTAAGCTTAATCTAGAttatttaaaaagaaagcgggaatgac
                     a"
                     /listShort="mapB, S267, yflH, S266, yflI, S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(822494)
                     /Source="Nicolas_upshifts"
                     /id="U585"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1950
                     /SigmaFactorBS="cccgggggtatttcttttttcccaggtccgtgtgTTTCCTAT
                     TtttaagacagtTGTGGTAAGCTTAATCTAGAttatttaaaaagaaagcgggaatgac
                     a"
                     /listShort="mapB, S267, yflH, S266, yflI, S264, yflJ"
                     /GFF_Attribute="listLong"
     S_feature       complement(822496..823632)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_840528_841664_c"
                     /HighExp="S6, S8, S7, S5, BT, C30, Paraq, B36, G180, Pyr"
                     /AntisenseName="nagP"
                     /AntisenseCor="0.180776000778922"
                     /AntisenseRegPval="-2.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S268"
     promotor_-35    complement(822512..822520)
                     /Source="Nicolas_upshift_promotors"
                     /id="U585"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1950
                     /SigmaFactorBS="cccgggggtatttcttttttcccaggtccgtgtgTTTCCTAT
                     TtttaagacagtTGTGGTAAGCTTAATCTAGAttatttaaaaagaaagcgggaatgac
                     a"
                     /listShort="mapB, S267, yflH, S266, yflI, S264, yflJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    822563..822564
                     /Source="Nicolas_upshift_promotors"
                     /id="U586"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.493506493506494"
                     /psig="0.995004995004995"
                     /xcortree=1559
                     /SigmaFactorBS="gacctgggaaaaaagaaatacccccgggaaaattggTAtaga
                     tcactagatatcttaTATGGTATATTTGAAAAAAAagggtatgagggggatgggtatg
                     c"
                     /listShort="nagP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    822584..822603
                     /Source="Nicolas_upshift_promotors"
                     /id="U586"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.493506493506494"
                     /psig="0.995004995004995"
                     /xcortree=1559
                     /SigmaFactorBS="gacctgggaaaaaagaaatacccccgggaaaattggTAtaga
                     tcactagatatcttaTATGGTATATTTGAAAAAAAagggtatgagggggatgggtatg
                     c"
                     /listShort="nagP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        822587
                     /Source="Nicolas_upshifts"
                     /id="U586"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.493506493506494"
                     /psig="0.995004995004995"
                     /xcortree=1559
                     /SigmaFactorBS="gacctgggaaaaaagaaatacccccgggaaaattggTAtaga
                     tcactagatatcttaTATGGTATATTTGAAAAAAAagggtatgagggggatgggtatg
                     c"
                     /listShort="nagP"
                     /GFF_Attribute="listLong"
     CDS             822624..823982
                     /gene="nagP"
                     /locus_tag="BSU_07700"
                     /old_locus_tag="BSU07700"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15849754, 16850406,
                     8246840; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     N-acetylglucosamine-specific enzyme IICB component"
                     /protein_id="NP_388651.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07700"
                     /db_xref="EnsemblGenomes-Tr:CAB12599"
                     /db_xref="GOA:O34521"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR010974"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG12941"
                     /db_xref="UniProtKB/Swiss-Prot:O34521"
                     /translation="MLSFLQKLGKSFMLPIAVLPAVGIILALGREDVFNIPFVYQAGT
                     AVFDHLPLIFAIGIAIGISKDSNGAAGLSGAISYLMLDAATKTIDKTNNMAVFGGIIA
                     GLIAGYTYNRFKDTKLPEYLGFFSGRRLVPILTAIITIILAGIFGVVWPPIQSCINSF
                     GEWMLGLGGIGAGIFGLFNRLLIPLGLHHVLNNIFWFQFGEYNGVTGDLARFFAKDPT
                     AGTYMTGFFPIMMFGLPAACLAMVVTAKPSKRKATAGMMIGFALTAFITGITEPIEFA
                     FMFLSPLLYAVHAVLTGLSLFIVNWLGIRSGFSFSAGAIDYVLSYGIAEKPLLLLLVG
                     ICYAAVYFIVFYVLIKALNLKTPGREDDDVDEVLDENTVQDVNENIMLKGLGGKENLQ
                     TIDHCATRLRLTVKDTALVDEALLKKAGAKGVVKSGGQSVQVIIGPNVEFAAEELRAA
                     VK*"
     gene            822624..823982
                     /gene="nagP"
                     /locus_tag="BSU_07700"
                     /old_locus_tag="BSU07700"
     promotor_-10    complement(823618..823637)
                     /Source="Nicolas_upshift_promotors"
                     /id="U587"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1378
                     /SigmaFactorBS="gcgtttttaaattcaaagccttaatcagtacaTAAAACACGA
                     taaagtatactgcCGCATAGCATATACCTACCAaaagcagaagcagcggtttttccgc
                     g"
                     /listShort="S268, mapB, S267, yflH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(823632)
                     /Source="Nicolas_upshifts"
                     /id="U587"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1378
                     /SigmaFactorBS="gcgtttttaaattcaaagccttaatcagtacaTAAAACACGA
                     taaagtatactgcCGCATAGCATATACCTACCAaaagcagaagcagcggtttttccgc
                     g"
                     /listShort="S268, mapB, S267, yflH"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(823651..823660)
                     /Source="Nicolas_upshift_promotors"
                     /id="U587"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1378
                     /SigmaFactorBS="gcgtttttaaattcaaagccttaatcagtacaTAAAACACGA
                     taaagtatactgcCGCATAGCATATACCTACCAaaagcagaagcagcggtttttccgc
                     g"
                     /listShort="S268, mapB, S267, yflH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      823868
                     /Source="Nicolas_upshifts"
                     /id="D382"
                     /incds=1
                     /nref=1
                     /ntot=106
                     /MaxReadThrough="3.67421"
                     /MaxDrop="3.12268"
                     /score="44.7832762"
                     /energy="-16.9"
                     /TU="U586"
                     /idTUdmin="U586"
                     /TUdmin="-88"
                     /isTUend="FALSE"
     downshifts      823978
                     /Source="Nicolas_upshifts"
                     /id="D383"
                     /incds=0
                     /nref=2
                     /ntot=87
                     /MaxReadThrough="2.54331"
                     /MaxDrop="3.17508"
                     /score="44.7832762"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U586"
                     /TUdmin=22
                     /isTUend="TRUE"
     CDS             complement(824015..825964)
                     /gene="ltaSB"
                     /locus_tag="BSU_07710"
                     /old_locus_tag="BSU07710"
                     /function="16.1: Circulate"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10658653, 21255105"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10658653, 21255105;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="enzyme responsible for polyglycerolphosphate
                     LTAsynthesis"
                     /protein_id="NP_388652.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07710"
                     /db_xref="EnsemblGenomes-Tr:CAB12600"
                     /db_xref="GOA:O34952"
                     /db_xref="InterPro:IPR000917"
                     /db_xref="InterPro:IPR012160"
                     /db_xref="InterPro:IPR017849"
                     /db_xref="InterPro:IPR017850"
                     /db_xref="PDB:2W8D"
                     /db_xref="SubtiList:BG12940"
                     /db_xref="UniProtKB/Swiss-Prot:O34952"
                     /translation="MKTFIKERGLAFFLIAVVLLWIKTYVGYVLNFNLGIDNTIQKIL
                     LFVNPLSSSLFFLGFGLLFKKKLQQTAIIVIHFLMSFLLYANIVYYRFFNDFITIPVI
                     MQAKTNGGQLGDSAFSLMRPTDAFYFIDTIILIILAIKVNKPAETSSKKSFRIIFASS
                     ILVFLINLAVAESDRPELLTRSFDRNYLVKYLGTYNFTIYDAVQNIKSNSQRALADSS
                     DVTEVENYMKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKL
                     AHDNETFYFDNFFHQTGQGKTSDAEFMMENSLYPLAQGSVFVNKAQNTLQSVPAILKS
                     KNYTSATFHGNTQTFWNRNEMYKAEGIDKFFDSAYYDMNEENTKNYGMKDKPFFKESM
                     PLLESLPQPFYTKFITLSNHFPFGMDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQ
                     FFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPLFIH
                     AAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLMSGSDILSKEHREVIPFRNGDFIS
                     PKYTKISGKYYDTKTGKELDESEVDKSEDSLVKKELEMSDKIINGDLLRFYEPKGFKK
                     VNPSDYDYTKHDEDSSETSKDNEDK*"
     gene            complement(824015..825964)
                     /gene="ltaSB"
                     /locus_tag="BSU_07710"
                     /old_locus_tag="BSU07710"
     downshifts      complement(824032)
                     /Source="Nicolas_upshifts"
                     /id="D384"
                     /incds=0
                     /nref=219
                     /ntot=250
                     /MaxReadThrough="1.71031"
                     /MaxDrop="6.08461"
                     /score="43.6427282"
                     /energy="-15.9"
                     /TU="NA"
                     /idTUdmin="U589"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    825074..825080
                     /Source="Nicolas_upshift_promotors"
                     /id="U588"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=153
                     /SigmaFactorBS="acagagagttttccatcataaattcagcatcagaTGTTTTAc
                     cttgtcccgtttggTGGAAAAAGTTATCAAAGTagaacgtttcgttatcatgtgccag
                     t"
                     /listShort="S269, yflD, yflB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    825096..825114
                     /Source="Nicolas_upshift_promotors"
                     /id="U588"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=153
                     /SigmaFactorBS="acagagagttttccatcataaattcagcatcagaTGTTTTAc
                     cttgtcccgtttggTGGAAAAAGTTATCAAAGTagaacgtttcgttatcatgtgccag
                     t"
                     /listShort="S269, yflD, yflB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       825100..826064
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_843132_844096"
                     /HighExp="Etha, Salt, Sw, Gly, C30, M9-stat, S8, B60, BC,
                     S7"
                     /AntisenseName="yflE"
                     /AntisenseCor="-0.385555454026206"
                     /AntisenseRegPval="-10.199999999999999"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S269"
     upshifts        825100
                     /Source="Nicolas_upshifts"
                     /id="U588"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=153
                     /SigmaFactorBS="acagagagttttccatcataaattcagcatcagaTGTTTTAc
                     cttgtcccgtttggTGGAAAAAGTTATCAAAGTagaacgtttcgttatcatgtgccag
                     t"
                     /listShort="S269, yflD, yflB"
                     /GFF_Attribute="listLong"
     S_feature       complement(825965..826039)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_843997_844071_c"
                     /HighExp="Paraq, H2O2, LBGexp, G150, G135, G180, Lbexp,
                     C30, LPhT, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S270"
     promotor_-10    complement(826016..826035)
                     /Source="Nicolas_upshift_promotors"
                     /id="U589"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.956043956043956"
                     /psig=1
                     /xcortree=2614
                     /SigmaFactorBS="gattcgacggcgtttttcgccactttctccctcatacgattt
                     tcACTTTtctaatctgctgattCGTGTTATATTGGATACGTTcgttttttctatcgtt
                     t"
                     /listShort="S270, yflE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(826039)
                     /Source="Nicolas_upshifts"
                     /id="U589"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.956043956043956"
                     /psig=1
                     /xcortree=2614
                     /SigmaFactorBS="gattcgacggcgtttttcgccactttctccctcatacgattt
                     tcACTTTtctaatctgctgattCGTGTTATATTGGATACGTTcgttttttctatcgtt
                     t"
                     /listShort="S270, yflE"
                     /GFF_Attribute="listLong"
     S_feature       complement(826041..826563)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_844073_844595_c"
                     /HighExp="S3, LoTm, S7, S4, S5, S8, S6, M9-stat, C30, Pyr"
                     /AntisenseName="yflD"
                     /AntisenseCor="0.24383322556613099"
                     /AntisenseRegPval="-4.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S271"
     promotor_-35    complement(826051..826055)
                     /Source="Nicolas_upshift_promotors"
                     /id="U589"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.956043956043956"
                     /psig=1
                     /xcortree=2614
                     /SigmaFactorBS="gattcgacggcgtttttcgccactttctccctcatacgattt
                     tcACTTTtctaatctgctgattCGTGTTATATTGGATACGTTcgttttttctatcgtt
                     t"
                     /listShort="S270, yflE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             826065..826202
                     /gene="yflD"
                     /locus_tag="BSU_07720"
                     /old_locus_tag="BSU07720"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388653.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07720"
                     /db_xref="EnsemblGenomes-Tr:CAB12601"
                     /db_xref="SubtiList:BG12939"
                     /db_xref="UniProtKB/Swiss-Prot:O34489"
                     /translation="MREKVAKNAVESTFRFDITKCKTRYLSRNKGIKWYIENCMIKYK
                     V*"
     gene            826065..826202
                     /gene="yflD"
                     /locus_tag="BSU_07720"
                     /old_locus_tag="BSU07720"
     upshifts        826180
                     /Source="Nicolas_upshifts"
                     /id="U590"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.952047952047952"
                     /xcortree=589
                     /SigmaFactorBS="ccaaatgtaaaacaaggtatctttctagaaataaaggaataa
                     aatggtacattgagaattgTATGATAAAATATAAGGTATagataaaaagaggtgaaat
                     g"
                     /listShort="yflB"
                     /listLong="yflA, S272"
     misc_feature    826181..826200
                     /Source="Nicolas_upshift_promotors"
                     /id="U590"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.895104895104895"
                     /psig="0.952047952047952"
                     /xcortree=589
                     /SigmaFactorBS="ccaaatgtaaaacaaggtatctttctagaaataaaggaataa
                     aatggtacattgagaattgTATGATAAAATATAAGGTATagataaaaagaggtgaaat
                     g"
                     /listShort="yflB"
                     /listLong="yflA, S272"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             826221..826613
                     /gene="yflB"
                     /locus_tag="BSU_07735"
                     /old_locus_tag="BSU07735"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388655.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07735"
                     /db_xref="EnsemblGenomes-Tr:CAB12603"
                     /db_xref="InterPro:IPR018961"
                     /db_xref="SubtiList:BG12937"
                     /db_xref="UniProtKB/Swiss-Prot:O34887"
                     /translation="MDFSHIVSEDKIKRAIKDGDFQNLPGMGKPLPKDDAAHLPESLR
                     MGYRILKNAGMAEDEGALKKELMTIDHLIEKCYDEKEREQLIRKKSEKQLLLDKLVDK
                     KGMFSKPASAFYKNKVYDRLGRNRPSSS*"
     gene            826221..826613
                     /gene="yflB"
                     /locus_tag="BSU_07735"
                     /old_locus_tag="BSU07735"
     promotor_-10    complement(826561..826579)
                     /Source="Nicolas_upshift_promotors"
                     /id="U591"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=999
                     /SigmaFactorBS="cgccatcctgcagacaagacaaatcagctggaagaaGGTCTG
                     tttcgtccaagccggTCATATACTTTATTCTTATaaaaagcggatgctggctttgaaa
                     a"
                     /listShort="S271"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(826576)
                     /Source="Nicolas_upshifts"
                     /id="U591"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=999
                     /SigmaFactorBS="cgccatcctgcagacaagacaaatcagctggaagaaGGTCTG
                     tttcgtccaagccggTCATATACTTTATTCTTATaaaaagcggatgctggctttgaaa
                     a"
                     /listShort="S271"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(826595..826600)
                     /Source="Nicolas_upshift_promotors"
                     /id="U591"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=999
                     /SigmaFactorBS="cgccatcctgcagacaagacaaatcagctggaagaaGGTCTG
                     tttcgtccaagccggTCATATACTTTATTCTTATaaaaagcggatgctggctttgaaa
                     a"
                     /listShort="S271"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    826682..826688
                     /Source="Nicolas_upshift_promotors"
                     /id="U592"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=234
                     /SigmaFactorBS="aaaagccatcctttttatgttccaagttctatgtcaaaaGGT
                     TTATgtttttccatctatGGGAAATGATTCATAAACGaaaaaagggtgatgggatgga
                     a"
                     /listShort="yflA, S272"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    826703..826721
                     /Source="Nicolas_upshift_promotors"
                     /id="U592"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=234
                     /SigmaFactorBS="aaaagccatcctttttatgttccaagttctatgtcaaaaGGT
                     TTATgtttttccatctatGGGAAATGATTCATAAACGaaaaaagggtgatgggatgga
                     a"
                     /listShort="yflA, S272"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        826703
                     /Source="Nicolas_upshifts"
                     /id="U592"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=234
                     /SigmaFactorBS="aaaagccatcctttttatgttccaagttctatgtcaaaaGGT
                     TTATgtttttccatctatGGGAAATGATTCATAAACGaaaaaagggtgatgggatgga
                     a"
                     /listShort="yflA, S272"
                     /GFF_Attribute="listLong"
     CDS             826738..828153
                     /gene="yflA"
                     /locus_tag="BSU_07750"
                     /old_locus_tag="BSU07750"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid transporter"
                     /protein_id="NP_388656.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07750"
                     /db_xref="EnsemblGenomes-Tr:CAB12604"
                     /db_xref="GOA:O34708"
                     /db_xref="InterPro:IPR001463"
                     /db_xref="SubtiList:BG12936"
                     /db_xref="UniProtKB/Swiss-Prot:O34708"
                     /translation="MERLLVWIEHISDWLWGPPLIILLTGTGLYFTILLKGFQFRYPL
                     YIFKQTIGSVGKKPKGEGTVTPLQALTSALSSTIGAANIVGVPAAIMFGGPGAVFWMW
                     LIALFAMAIKFSESVLAVHYREKNEQGEYVGGPMYYITKGLRMKWLGVFFSVALIVEL
                     IPSIMVQGNSVSVSLAETFSFNKIYAGIGIAFLIGLVVIGGVKRIGKVTEFVVPLMAG
                     AYAGAGLLIVLMNLSSVPAFFSLVFSNAFTSSSAVGGFAGAALAETVRWGFARGLYSN
                     EAGMGTAPIAHAAAMTDHPVRQGFWSVIGIVIDTLIICTTTAFIVLASGVWTGKNASN
                     DPAALTTAAFQHYFGSGGGYFVSVSLVFFVVSTIMVVIFYGVKQAEFLFGRLAGHVIK
                     FVYLAAIIIGAAGGAKAIWGVLDLALVFIVVPNVIALLLLSRKVKALYTEFFTSEQYY
                     LKDIRKTKQKPVYPTKEAKNS*"
     gene            826738..828153
                     /gene="yflA"
                     /locus_tag="BSU_07750"
                     /old_locus_tag="BSU07750"
     downshifts      complement(826739)
                     /Source="Nicolas_upshifts"
                     /id="D385"
                     /incds=0
                     /nref=4
                     /ntot=16
                     /MaxReadThrough="0.76492"
                     /MaxDrop="4.20973"
                     /score="43.6427282"
                     /energy="-15.9"
                     /TU="NA"
                     /idTUdmin="U593"
                     /TUdmin=22
                     /isTUend="TRUE"
     promotor_no_box complement(826765..826865)
                     /Source="Nicolas_upshift_promotors"
                     /id="U593"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.723276723276723"
                     /psig="0.006993006993007"
                     /xcortree=122
                     /SigmaFactorBS="ggatagcgaaattgaaaacctttcagcaaaatagtgaaatac
                     aagcccgtccccgtcagcaggatgattagcggcggaccccacagccaatcagatatat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(826805)
                     /Source="Nicolas_upshifts"
                     /id="U593"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.723276723276723"
                     /psig="0.006993006993007"
                     /xcortree=122
                     /SigmaFactorBS="ggatagcgaaattgaaaacctttcagcaaaatagtgaaatac
                     aagcccgtccccgtcagcaggatgattagcggcggaccccacagccaatcagatatat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             complement(828150..829226)
                     /gene="yfkT"
                     /locus_tag="BSU_07760"
                     /old_locus_tag="BSU07760"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10762253, 15849754,
                     16850406, 23625846; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore germination integral inner
                     membrane transporter"
                     /protein_id="NP_388657.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07760"
                     /db_xref="EnsemblGenomes-Tr:CAB12605"
                     /db_xref="GOA:O34573"
                     /db_xref="InterPro:IPR004761"
                     /db_xref="SubtiList:BG12935"
                     /db_xref="UniProtKB/Swiss-Prot:O34573"
                     /translation="MDKTSAYQGLFFGALYTLAVGLKHAPILMIESAKQNAWHSYILG
                     VVIVIPALWLMHRLMKKHQDKNIYELLSDSSPIAGRIIILLFSLYFLLINAHDIRFFI
                     NLINILFLPRTPMAVLGGVIIFVAICIAREGKETLTRMAQIFLFPFGILVLFLPFTLA
                     TQIELQNLTPVFEGLIPYLQSGYYAFGTMGELIILPLLFSNRSVPLKYTIFAILLGAL
                     LLAVMLFSSISVFGPNLTSTFFDPAYMVIRQIRITDFLDRSDLIIAAFWIPVIMVKIA
                     GSLYIVVYGLSFLHSKIDPKAMYTPTGMFSVVCGFWFFLNTNQLIDFNRIKPIINVVI
                     SLLLPLLIYLIIKSKALFGAKAKH*"
     gene            complement(828150..829226)
                     /gene="yfkT"
                     /locus_tag="BSU_07760"
                     /old_locus_tag="BSU07760"
     S_feature       828154..831520
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_846186_849552"
                     /HighExp="Salt, Sw, Etha, LoTm, B36, Heat, LPhT, BC,
                     T0.30H, H2O2"
                     /AntisenseName="yfkR"
                     /AntisenseCor="-1.3937740774571999E-3"
                     /AntisenseRegPval=0
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.952"
                     /label="S272"
     CDS             complement(829250..829450)
                     /gene="yfkS"
                     /locus_tag="BSU_07770"
                     /old_locus_tag="BSU07770"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23625846; Product type
                     rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore germination D protein"
                     /protein_id="NP_388658.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07770"
                     /db_xref="EnsemblGenomes-Tr:CAB12606"
                     /db_xref="GOA:O35036"
                     /db_xref="SubtiList:BG12934"
                     /db_xref="UniProtKB/Swiss-Prot:O35036"
                     /translation="MISYIVQTLIVCIAIYAYEWKNFRSANNLTKWAFSLLIAGSAFL
                     WIYMRVNPLLPRLGHLFKYIPF*"
     gene            complement(829250..829450)
                     /gene="yfkS"
                     /locus_tag="BSU_07770"
                     /old_locus_tag="BSU07770"
     CDS             complement(829466..830620)
                     /gene="yfkR"
                     /locus_tag="BSU_07780"
                     /old_locus_tag="BSU07780"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10762253, 23625846;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore germination protein"
                     /protein_id="NP_388659.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07780"
                     /db_xref="EnsemblGenomes-Tr:CAB12607"
                     /db_xref="GOA:O35028"
                     /db_xref="InterPro:IPR008844"
                     /db_xref="SubtiList:BG12933"
                     /db_xref="UniProtKB/Swiss-Prot:O35028"
                     /translation="MKKTIYKCVLPLLICILLTGCWDRTEINDIAFVVSSAIDKKKDQ
                     YRVAMQIPLVGQLGGQTGGGGGTAGSKTWYVDSASGTTIREANNKLQTSLSRTINTSH
                     RRTVIIGEDMARDGVAPVFDILTRNPQNRLTALILVSRGEARDILNTDVQLEQFPAEM
                     IRELAIIATSRPVFLSRFMSDLVEIGSDPYAPVISASKTKPGGKGKSNLKIDGLAIFK
                     KDRLMDIFKDEHMTAALMLLNQARQPEFIVDLPNQMGQASIQLQKSNASFHAAEKNGK
                     LSMTIEIRAKGIIMENQSTYETRENDQYYIIQKALNRTIKKDVISTVHRLQKLKADPA
                     GFQDRTIRSTATTKNLLKKEWEEVYKDMEVHVVPIVTIEQGGVLYKTISH*"
     gene            complement(829466..830620)
                     /gene="yfkR"
                     /locus_tag="BSU_07780"
                     /old_locus_tag="BSU07780"
     CDS             complement(830601..832142)
                     /gene="yfkQ"
                     /locus_tag="BSU_07790"
                     /old_locus_tag="BSU07790"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10762253, 23625846;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore germination protein"
                     /protein_id="NP_388660.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07790"
                     /db_xref="EnsemblGenomes-Tr:CAB12608"
                     /db_xref="GOA:O34486"
                     /db_xref="InterPro:IPR004995"
                     /db_xref="SubtiList:BG12932"
                     /db_xref="UniProtKB/Swiss-Prot:O34486"
                     /translation="MNKRDKALQLIKELEDNQDRPISPNLKENLENLTLLTEGCSDIV
                     FRQFDFGNGLCGFIVYIEGIVKSEHIQDHALRPFLMHLTDQIDEHEEALQNTLSISSV
                     ALETSMSKVAASIIEGNAVLFADGHSKGLILNIKGGQRRSIEEPITESTIRGSREGFT
                     ESLRVNTALVRFRVKTFQLKMISFKIGTKTKTDVVLAYIDGLADPKVIDKAKKRIKKI
                     KIDAVLESGYIEEFIEDDTYSPFPQLQYTERPDTVAAQLLEGRFAIFTDNTPFVLTGP
                     ITFWQLMQASEDYYERYLMSNLIRWLRYMFLFVALYLPAIYVAVITYHQDLMPTNLMF
                     SVASAREPIPFPAIIEALIMEISFEALREAGVRLPKTIGQTVSILGALVIGTAAVEAG
                     IVSAPMVIIVSLTGIASFTIPRFNLAISIRMLRFPLMFLASIFGIFGIMLGTIILVLH
                     LCKLQSFGIPYLSGISPFKRDEVKDIFVRAPWWTMTRRPGTYSRGNGQKGAKREDPKD
                     EENNI*"
     gene            complement(830601..832142)
                     /gene="yfkQ"
                     /locus_tag="BSU_07790"
                     /old_locus_tag="BSU07790"
     promotor_-10    complement(832192..832203)
                     /Source="Nicolas_upshift_promotors"
                     /id="U594"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=879
                     /SigmaFactorBS="aacacttttttatagcgctttcatcctagtctGGAATATatg
                     aaacagacaaGGTTACCCTAAAagtcacaagcacttattgaatatgacattaaaaagc
                     a"
                     /listShort="yfkQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(832195)
                     /Source="Nicolas_upshifts"
                     /id="U594"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=879
                     /SigmaFactorBS="aacacttttttatagcgctttcatcctagtctGGAATATatg
                     aaacagacaaGGTTACCCTAAAagtcacaagcacttattgaatatgacattaaaaagc
                     a"
                     /listShort="yfkQ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(832217..832223)
                     /Source="Nicolas_upshift_promotors"
                     /id="U594"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=879
                     /SigmaFactorBS="aacacttttttatagcgctttcatcctagtctGGAATATatg
                     aaacagacaaGGTTACCCTAAAagtcacaagcacttattgaatatgacattaaaaagc
                     a"
                     /listShort="yfkQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    832252..832259
                     /Source="Nicolas_upshift_promotors"
                     /id="U595"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=1569
                     /SigmaFactorBS="tccagactaggatgaaagcgctataaaaaagTGTTGACTacc
                     tgtatatacagGAATACAATATGATTATAAGttgtatatacaagttataaaaacggat
                     a"
                     /listShort="treP, treA, treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    832274..832293
                     /Source="Nicolas_upshift_promotors"
                     /id="U595"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=1569
                     /SigmaFactorBS="tccagactaggatgaaagcgctataaaaaagTGTTGACTacc
                     tgtatatacagGAATACAATATGATTATAAGttgtatatacaagttataaaaacggat
                     a"
                     /listShort="treP, treA, treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        832281
                     /Source="Nicolas_upshifts"
                     /id="U595"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=1569
                     /SigmaFactorBS="tccagactaggatgaaagcgctataaaaaagTGTTGACTacc
                     tgtatatacagGAATACAATATGATTATAAGttgtatatacaagttataaaaacggat
                     a"
                     /listShort="treP, treA, treR, yfkO"
                     /GFF_Attribute="listLong"
     downshifts      complement(832327)
                     /Source="Nicolas_upshifts"
                     /id="D386"
                     /incds=0
                     /nref=1
                     /ntot=29
                     /MaxReadThrough="1.35091"
                     /MaxDrop="3.57201"
                     /score="22.8661179"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U596"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             832335..833747
                     /gene="treP"
                     /locus_tag="BSU_07800"
                     /old_locus_tag="BSU07800"
                     /EC_number="2.7.1.201"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 8755887, 8917076, 8969503,
                     18977770"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     8755887, 8917076, 8969503, 18977770; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     trehalose-specific enzyme IIBC component"
                     /protein_id="NP_388661.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07800"
                     /db_xref="EnsemblGenomes-Tr:CAB12609"
                     /db_xref="GOA:P39794"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR004719"
                     /db_xref="InterPro:IPR011296"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG11009"
                     /db_xref="UniProtKB/Swiss-Prot:P39794"
                     /translation="MGELNKSARQIVEAVGGAENIAAATHCVTRLRFALIDESKVDQE
                     MLDQIDVVKGSFSTNGQFQVVIGQGTVNKVYAELVKETGIGESTKDEVKKASEKNMNP
                     LQRAVKTLADIFIPILPAIVTAGLLMGINNILTAEGIFFSTKSIVQVYPQWADLANMI
                     NLIAGTAFTFLPALIGWSAVKRFGGNPLLGIVLGVMLVHPDLLNAWGYGAAEQSGEIP
                     VWNLFGLEVQKVGYQGQVLPILLASYMLAKIEVFLTKRTPEGIQLLVVAPITLLLTGF
                     ASFIIIGPITFAIGNVLTSGLISVFGSFAALGGLLYGGFYSALVITGMHHTFLAVDLQ
                     LIGSKLGGTFLWPMLALSNIAQGSAALAMMFIVKDEKQKGLSLTSGISAYLGITEPAI
                     FGVNLRYRFPFIIAMVSSGLAGMYISSQGVLASSVGVGGVPGIFSIMSQYWGAFAIGM
                     AIVLIVPFAGTYAYARFKHK*"
     gene            832335..833747
                     /gene="treP"
                     /locus_tag="BSU_07800"
                     /old_locus_tag="BSU07800"
     promotor_no_box complement(832353..832453)
                     /Source="Nicolas_upshift_promotors"
                     /id="U596"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.66033966033966"
                     /psig="0.0889110889110889"
                     /xcortree=1570
                     /SigmaFactorBS="ttgctttcatctattaaagcaaaacgcaaacgtgtaacacaa
                     tgagttgccgctgcaatattttcagcaccgccgactgcttcgacaatctgacgtgccg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(832393)
                     /Source="Nicolas_upshifts"
                     /id="U596"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.66033966033966"
                     /psig="0.0889110889110889"
                     /xcortree=1570
                     /SigmaFactorBS="ttgctttcatctattaaagcaaaacgcaaacgtgtaacacaa
                     tgagttgccgctgcaatattttcagcaccgccgactgcttcgacaatctgacgtgccg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             833818..835503
                     /gene="treA"
                     /locus_tag="BSU_07810"
                     /old_locus_tag="BSU07810"
                     /EC_number="3.2.1.93"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:7651129, 7751281, 8755887, 8917076, 9701821,
                     26894535"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7651129, 7751281,
                     8755887, 8917076, 9701821, 26894535; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate hydrolase"
                     /protein_id="NP_388662.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07810"
                     /db_xref="EnsemblGenomes-Tr:CAB12610"
                     /db_xref="GOA:P39795"
                     /db_xref="InterPro:IPR006047"
                     /db_xref="InterPro:IPR012769"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="InterPro:IPR032091"
                     /db_xref="SubtiList:BG11010"
                     /db_xref="UniProtKB/Swiss-Prot:P39795"
                     /translation="MKTEQTPWWKKAVVYQIYPKSFNDTTGNGVGDLNGIIEKLDYLK
                     TLQVDVLWLTPIYDSPQHDNGYDIRDYYSIYPEYGTMEDFERLVSEAHKRDLKVVMDL
                     VVNHTSTEHKWFREAISSIDSPYRDFYIWKKPQENGSVPTNWESKFGGSAWELDEASG
                     QYYLHLFDVTQADLNWENEEVRKHVYDMMHFWFEKGIDGFRLDVINLISKDQRFPNAE
                     EGDGRSFYTDGPRVHEFLHEMNEKVFSHYDSMTVGEMSSTTVDHCIRYTNPDNKELDM
                     TFSFHHLKVDYPNGEKWALAPFDFLKLKEILSDWQTGMHAGGGWNALFWCNHDQPRVV
                     SRYGDDGAYRVKSAKMLATAIHMMQGTPYIYQGEELGMTNPKFTDISSYRDVESLNMY
                     HAFKEKGMADQDITAILQAKSRDNSRTPVQWDATENGGFTTGTPWIPVAGNYREINAE
                     AALRDQNSVFYHYQKLIQIRKMYDIVTEGTYEIIAKDDPNIFAYLRHGSNEKLLVINN
                     FYGTEAAFTLPDSLAPDEWKAEVLLTNDEAREGLQNMTLRPYESIVYRLTKPC*"
     gene            833818..835503
                     /gene="treA"
                     /locus_tag="BSU_07810"
                     /old_locus_tag="BSU07810"
     promotor_-10    complement(834124..834139)
                     /Source="Nicolas_upshift_promotors"
                     /id="U597"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1694
                     /SigmaFactorBS="tacgggctgtctattgaagagatcgcctcgCGAAACCATTtg
                     tgctctgttgACGTATGATTGACAACaagatccatgacgactttcaggtctcttttat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(834131)
                     /Source="Nicolas_upshifts"
                     /id="U597"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1694
                     /SigmaFactorBS="tacgggctgtctattgaagagatcgcctcgCGAAACCATTtg
                     tgctctgttgACGTATGATTGACAACaagatccatgacgactttcaggtctcttttat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(834152..834161)
                     /Source="Nicolas_upshift_promotors"
                     /id="U597"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1694
                     /SigmaFactorBS="tacgggctgtctattgaagagatcgcctcgCGAAACCATTtg
                     tgctctgttgACGTATGATTGACAACaagatccatgacgactttcaggtctcttttat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    835476..835480
                     /Source="Nicolas_upshift_promotors"
                     /id="U598"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig=1
                     /xcortree=2516
                     /SigmaFactorBS="ggcttcagaacatgacgcttcgcccatatgagtccatTGTTT
                     atcgtttaacgaaacCGTGTTAAACTAAGCTGGGTggtccataatgaaggtgaataaa
                     t"
                     /listShort="treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    835496..835515
                     /Source="Nicolas_upshift_promotors"
                     /id="U598"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig=1
                     /xcortree=2516
                     /SigmaFactorBS="ggcttcagaacatgacgcttcgcccatatgagtccatTGTTT
                     atcgtttaacgaaacCGTGTTAAACTAAGCTGGGTggtccataatgaaggtgaataaa
                     t"
                     /listShort="treR, yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        835499
                     /Source="Nicolas_upshifts"
                     /id="U598"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.967032967032967"
                     /psig=1
                     /xcortree=2516
                     /SigmaFactorBS="ggcttcagaacatgacgcttcgcccatatgagtccatTGTTT
                     atcgtttaacgaaacCGTGTTAAACTAAGCTGGGTggtccataatgaaggtgaataaa
                     t"
                     /listShort="treR, yfkO"
                     /GFF_Attribute="listLong"
     CDS             835524..836240
                     /gene="treR"
                     /locus_tag="BSU_07820"
                     /old_locus_tag="BSU07820"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8755887, 9829827, 17705272"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8755887, 9829827,
                     17705272; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (TreR-trehalose)"
                     /protein_id="NP_388663.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07820"
                     /db_xref="EnsemblGenomes-Tr:CAB12611"
                     /db_xref="GOA:P39796"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR011663"
                     /db_xref="InterPro:IPR012770"
                     /db_xref="InterPro:IPR028978"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2OGG"
                     /db_xref="SubtiList:BG11011"
                     /db_xref="UniProtKB/Swiss-Prot:P39796"
                     /translation="MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRET
                     VRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSGLVSFKELAQTLGKETKTTVHKF
                     GLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
                     IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQY
                     TESRHRLDKFRFVDFARRGK*"
     gene            835524..836240
                     /gene="treR"
                     /locus_tag="BSU_07820"
                     /old_locus_tag="BSU07820"
     downshifts      836233
                     /Source="Nicolas_upshifts"
                     /id="D387"
                     /incds=0
                     /nref=3
                     /ntot=115
                     /MaxReadThrough="6.58905"
                     /MaxDrop="4.05981"
                     /score="24.6748216"
                     /energy="-11.1"
                     /TU="U595,U598"
                     /idTUdmin="U595"
                     /TUdmin="-792"
                     /isTUend="FALSE"
     promotor_-35    836315..836318
                     /Source="Nicolas_upshift_promotors"
                     /id="U599"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.995004995004995"
                     /xcortree=611
                     /SigmaFactorBS="caaaattgatactatccaacaaaaatgtgcgtACTTttactt
                     tttatcataATGGCTACAATAGAGATGAGagtaatctaaaggagaggtgttttacatg
                     g"
                     /listShort="yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    836334..836353
                     /Source="Nicolas_upshift_promotors"
                     /id="U599"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.995004995004995"
                     /xcortree=611
                     /SigmaFactorBS="caaaattgatactatccaacaaaaatgtgcgtACTTttactt
                     tttatcataATGGCTACAATAGAGATGAGagtaatctaaaggagaggtgttttacatg
                     g"
                     /listShort="yfkO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        836343
                     /Source="Nicolas_upshifts"
                     /id="U599"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.995004995004995"
                     /xcortree=611
                     /SigmaFactorBS="caaaattgatactatccaacaaaaatgtgcgtACTTttactt
                     tttatcataATGGCTACAATAGAGATGAGagtaatctaaaggagaggtgttttacatg
                     g"
                     /listShort="yfkO"
                     /GFF_Attribute="listLong"
     CDS             836380..837045
                     /gene="hypO"
                     /locus_tag="BSU_07830"
                     /old_locus_tag="BSU07830"
                     /EC_number="1.5.1.39"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15252706, 20727918, 20862523, 22238377, 26415543"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15252706, 20727918,
                     20862523, 22238377, 26415543; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin oxidoreductase (nitroreductase)"
                     /protein_id="NP_388664.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07830"
                     /db_xref="EnsemblGenomes-Tr:CAB12612"
                     /db_xref="GOA:O34475"
                     /db_xref="InterPro:IPR000415"
                     /db_xref="InterPro:IPR029479"
                     /db_xref="InterPro:IPR033878"
                     /db_xref="SubtiList:BG12931"
                     /db_xref="UniProtKB/Swiss-Prot:O34475"
                     /translation="MADLKTQILDAYNFRHATKEFDPNKKVSDSDFEFILETGRLSPS
                     SLGLEPWKFVVVQNPEFREKLREYTWGAQKQLPTASHFVLILARTAKDIKYNADYIKR
                     HLKEVKQMPQDVYEGYLSKTEEFQKNDLHLLESDRTLFDWASKQTYIALGNMMTAAAQ
                     IGVDSCPIEGFQYDHIHRILEEEGLLENGSFDISVMVAFGYRVRDPRPKTRSAVEDVV
                     KWV*"
     gene            836380..837045
                     /gene="hypO"
                     /locus_tag="BSU_07830"
                     /old_locus_tag="BSU07830"
     downshifts      837026
                     /Source="Nicolas_upshifts"
                     /id="D388"
                     /incds=0
                     /nref=180
                     /ntot=269
                     /MaxReadThrough="0.70079"
                     /MaxDrop="6.77615"
                     /score="34.5750428"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U595"
                     /TUdmin=1
                     /isTUend="TRUE"
     CDS             complement(837082..841470)
                     /gene="yfkN"
                     /locus_tag="BSU_07840"
                     /old_locus_tag="BSU07840"
                     /EC_number="3.1.4.16"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 14688230, 16291680,
                     21800427, 21906378, 25355936; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="exported 2',3'-cyclic-nucleotide
                     2'-phosphodiesterase, 2' (or 3') nucleotidase and 5'
                     nucleotidase"
                     /protein_id="NP_388665.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07840"
                     /db_xref="EnsemblGenomes-Tr:CAB12613"
                     /db_xref="GOA:O34313"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR006146"
                     /db_xref="InterPro:IPR006179"
                     /db_xref="InterPro:IPR008334"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="InterPro:IPR036907"
                     /db_xref="PDB:3GVE"
                     /db_xref="SubtiList:BG12930"
                     /db_xref="UniProtKB/Swiss-Prot:O34313"
                     /translation="MRIQKRRTHVENILRILLPPIMILSLILPTPPIHAEESAAPQVH
                     LSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGN
                     PLGEYAVKYQKDDIISGTKTHPIISVMNALKYDAGTLGNHEFNYGLDFLDGTIKGADF
                     PIVNANVKTTSGENRYTPYVINEKTLIDENGNEQKVKVGYIGFVPPQIMTWDKKNLEG
                     QVQVQDIVESANETIPKMKAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKGID
                     AIISGHQHGLFPSAEYAGVAQFNVEKGTINGIPVVMPSSWGKYLGVIDLKLEKADGSW
                     KVADSKGSIESIAGNVTSRNETVTNTIQQTHQNTLEYVRKPVGKTEADINSFFAQVKD
                     DPSIQIVTDAQKWYAEKEMKDTEYKNLPILSAGAPFKAGGRNGANYYTNIPAGDLAIK
                     NVGDLYLYDNTVQIVKLTGSEVKDWLEMSAGQFNQIDPAKGGDQALLNENFRSYNFDV
                     IDGVTYQVDVTKPAKYNENGKVINADSSRIINLSYEGKPISPSQEFLVVTNNYRASGG
                     GGFPHLTSDKIVHGSAVENRQVLMDYIIEQKTVNPKADNNWSIAPVSGTNLTFESSLL
                     AKPFADKADDVAYVGKSANEGYGVYKLQFDDDSNPDPPKDGLWDLTVMHTNDTHAHLD
                     DAARRMTKINEVRSETNHNILLDAGDVFSGDLYFTKWNGLADLKMMNMMGYDAMTFGN
                     HEFDKGPTVLSDFLSGNSATVDPANRYHFEAPEFPIVSANVDVSNEPKLKSFVKKPQT
                     FTAGEKKEAGIHPYILLDVDGEKVAVFGLTTEDTATTSSPGKSIVFNDAFETAQNTVK
                     AIQEEEKVNKIIALTHIGHNRDLELAKKVKGIDLIIGGHTHTLVDKMEVVNNEEPTIV
                     AQAKEYGQFLGRVDVAFDEKGVVQTDKSNLSVLPIDEHTEENPEAKQELDQFKNELED
                     VKNEKVGYTDVALDGQREHVRTKETNLGNFIADGMLAKAKEAAGARIAITNGGGIRAG
                     IDKGDITLGEVLNVMPFGNTLYVADLTGKQIKEALEQGLSNVENGGGAFPQVAGIEYT
                     FTLNNKPGHRVLEVKIESPNGDKVAINTDDTYRVATNNFVGAGGDGYSVFTEASHGED
                     LGYVDYEIFTEQLKKLGNKVSPKVEGRIKEVFLPTKQKDGSWTLDEDKFAIYAKNANT
                     PFVYYGIHEGSQEKPINLKVKKDQVKLLKERESDPSLTMFNYWYSMKMPMANLKTADT
                     AIGIKSTGELDVSLSDVYDFTVKQKGKEIKSFKEPVQLSLRMFDIEEAHNPAIYHVDR
                     KKKAFTKTGHGSVDDDMVTGYTNHFSEYTILNSGSNNKPPAFPSDQPTGGDDGNHGGG
                     SDKPGGKQPTDGNGGNDTPPGTQPTNGSGGNGSGGSGTDGPAGGLLPDTATSMYSILL
                     AGFLISALGTAMYLHQRRKQNRANQA*"
     gene            complement(837082..841470)
                     /gene="yfkN"
                     /locus_tag="BSU_07840"
                     /old_locus_tag="BSU07840"
     downshifts      complement(837101)
                     /Source="Nicolas_upshifts"
                     /id="D389"
                     /incds=0
                     /nref=155
                     /ntot=229
                     /MaxReadThrough="1.00159"
                     /MaxDrop="7.08591"
                     /score="22.8661179"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U600"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(841503..841522)
                     /Source="Nicolas_upshift_promotors"
                     /id="U600"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.994005994005994"
                     /xcortree=462
                     /SigmaFactorBS="actcatttttctcccttttacaataatcataaagaaacacCT
                     ACaaatagttacaaaaTATTCTTACAATAGGAGCTGtaacacaaatttcgttgaaagg
                     t"
                     /listShort="yfkN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(841520)
                     /Source="Nicolas_upshifts"
                     /id="U600"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.994005994005994"
                     /xcortree=462
                     /SigmaFactorBS="actcatttttctcccttttacaataatcataaagaaacacCT
                     ACaaatagttacaaaaTATTCTTACAATAGGAGCTGtaacacaaatttcgttgaaagg
                     t"
                     /listShort="yfkN"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(841537..841540)
                     /Source="Nicolas_upshift_promotors"
                     /id="U600"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.944055944055944"
                     /psig="0.994005994005994"
                     /xcortree=462
                     /SigmaFactorBS="actcatttttctcccttttacaataatcataaagaaacacCT
                     ACaaatagttacaaaaTATTCTTACAATAGGAGCTGtaacacaaatttcgttgaaagg
                     t"
                     /listShort="yfkN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    841647..841653
                     /Source="Nicolas_upshift_promotors"
                     /id="U601"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=231
                     /SigmaFactorBS="tgggcatttatgcttatcgtttgtcacaatcgcggaaTGTTT
                     ATtttagtgtggctgGGGTAGAGTGTTTTATGTAgacatataaagcgggaggttatga
                     a"
                     /listShort="yfkM, S273, yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    841667..841685
                     /Source="Nicolas_upshift_promotors"
                     /id="U601"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=231
                     /SigmaFactorBS="tgggcatttatgcttatcgtttgtcacaatcgcggaaTGTTT
                     ATtttagtgtggctgGGGTAGAGTGTTTTATGTAgacatataaagcgggaggttatga
                     a"
                     /listShort="yfkM, S273, yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        841670
                     /Source="Nicolas_upshifts"
                     /id="U601"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=231
                     /SigmaFactorBS="tgggcatttatgcttatcgtttgtcacaatcgcggaaTGTTT
                     ATtttagtgtggctgGGGTAGAGTGTTTTATGTAgacatataaagcgggaggttatga
                     a"
                     /listShort="yfkM, S273, yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
     CDS             841713..842231
                     /gene="sufLB"
                     /locus_tag="BSU_07850"
                     /old_locus_tag="BSU07850"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10220166, 12354229, 16181642, 17257049, 17933887,
                     24330391, 25283443, 25561404"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10220166, 12354229,
                     16181642, 17257049, 17933887, 24330391, 25283443,
                     25561404; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein 18; deglycase"
                     /protein_id="NP_388666.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07850"
                     /db_xref="EnsemblGenomes-Tr:CAB12614"
                     /db_xref="GOA:P80876"
                     /db_xref="InterPro:IPR002818"
                     /db_xref="InterPro:IPR006286"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG12929"
                     /db_xref="UniProtKB/Swiss-Prot:P80876"
                     /translation="MGKKIAVVLTYYFEDSEYTEPAKAFKEAGHELTVIEKEKGKTVK
                     GKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFA
                     ICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVVVCQDQLVTSRTPDDIP
                     AFNRESLALLEK*"
     gene            841713..842231
                     /gene="sufLB"
                     /locus_tag="BSU_07850"
                     /old_locus_tag="BSU07850"
     downshifts      842217
                     /Source="Nicolas_upshifts"
                     /id="D390"
                     /incds=0
                     /nref=35
                     /ntot=153
                     /MaxReadThrough="8.02255"
                     /MaxDrop="6.97573"
                     /score="42.2080398"
                     /energy="-12.9"
                     /TU="U601"
                     /idTUdmin="U601"
                     /TUdmin="-3542"
                     /isTUend="FALSE"
     downshifts      complement(842261)
                     /Source="Nicolas_upshifts"
                     /id="D391"
                     /incds=0
                     /nref=22
                     /ntot=199
                     /MaxReadThrough="1.59285"
                     /MaxDrop="3.61098"
                     /score="31.1923457"
                     /energy="-11.1"
                     /TU="NA"
                     /idTUdmin="U602"
                     /TUdmin=10
                     /isTUend="TRUE"
     S_feature       842262..843912
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_860294_861944"
                     /HighExp="Etha, S6, S8, S5, S7, Gly, Salt, LoTm, S4,
                     Diami"
                     /AntisenseName="yfkL"
                     /AntisenseCor="-0.52109661167911703"
                     /AntisenseRegPval="-19.399999999999999"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S273"
     CDS             complement(842271..843461)
                     /gene="yfkL"
                     /locus_tag="BSU_07860"
                     /old_locus_tag="BSU07860"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16828913,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter"
                     /protein_id="NP_388667.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07860"
                     /db_xref="EnsemblGenomes-Tr:CAB12615"
                     /db_xref="GOA:O34597"
                     /db_xref="InterPro:IPR005829"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12928"
                     /db_xref="UniProtKB/Swiss-Prot:O34597"
                     /translation="MQTTSIKTASGMYINYFFLGMVNIILASNMSSLTKQWNTDPTGI
                     SYVIAAIGFGKLLTYGISGVLSDKIGRKPLVVASAGIMAVFLVGIPLSPSYELAFVFA
                     LLAGVANSAMDAGTYPALTELFPSASGSANVLVKAFMSVGAALLPLLITFLADHSMFY
                     GFAFYLPAAVYLLNIIYLSTLSFPKKHKKPTNSGQQESPVFLSEPVFQKEGTALIIIG
                     FTSTALFTVSQIWLPSYAQKAAGLAESASVQLLSYYSIGSLASVLLLAVLLNRWVKPV
                     FITLLYPIITLCTLAVMLTVHIPVVLDITAFFLGFSTAGVFQITITLMTELFWKRKGT
                     VTGIVATASSLASILLPIATGLIAKAGGIAHIFIFDFGIAVIGTAAAAFLYYRYKKLT
                     GAQA*"
     gene            complement(842271..843461)
                     /gene="yfkL"
                     /locus_tag="BSU_07860"
                     /old_locus_tag="BSU07860"
     S_feature       complement(843462..843553)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_861494_861585_c"
                     /HighExp="C90, MG 10, BMM, MG-0.2, MG t5, MG 5, MG-0.1,
                     UNK1, HPh, LPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S274"
     CDS             complement(843554..843769)
                     /gene="yfkK"
                     /locus_tag="BSU_07870"
                     /old_locus_tag="BSU07870"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388668.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07870"
                     /db_xref="EnsemblGenomes-Tr:CAB12616"
                     /db_xref="InterPro:IPR009507"
                     /db_xref="SubtiList:BG12927"
                     /db_xref="UniProtKB/Swiss-Prot:O35019"
                     /translation="MSSPNTETLTQMIEEISQKLNMLNVGVIKAEDFSDEKIEDLTYL
                     HRMVMKKESFSPSEMQAIAQELASLRK*"
     gene            complement(843554..843769)
                     /gene="yfkK"
                     /locus_tag="BSU_07870"
                     /old_locus_tag="BSU07870"
     downshifts      complement(843613)
                     /Source="Nicolas_upshifts"
                     /id="D392"
                     /incds=0
                     /nref=1
                     /ntot=131
                     /MaxReadThrough="3.65318"
                     /MaxDrop="2.45155"
                     /score="16.183887"
                     /energy="-11.6"
                     /TU="U602"
                     /idTUdmin="U602"
                     /TUdmin="-1342"
                     /isTUend="FALSE"
     promotor_-10    complement(843801..843820)
                     /Source="Nicolas_upshift_promotors"
                     /id="U602"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.593406593406593"
                     /psig="0.994005994005994"
                     /xcortree=3074
                     /SigmaFactorBS="tcacttttttggaatgaacagcctgcttttagaatagggTTt
                     ttttctgatggaaTTCTGTTAGAATAAAACATAcctatattgcgcatagaaaggatgg
                     a"
                     /listShort="yfkK, S274, yfkL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(843815)
                     /Source="Nicolas_upshifts"
                     /id="U602"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.593406593406593"
                     /psig="0.994005994005994"
                     /xcortree=3074
                     /SigmaFactorBS="tcacttttttggaatgaacagcctgcttttagaatagggTTt
                     ttttctgatggaaTTCTGTTAGAATAAAACATAcctatattgcgcatagaaaggatgg
                     a"
                     /listShort="yfkK, S274, yfkL"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(843835..843836)
                     /Source="Nicolas_upshift_promotors"
                     /id="U602"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.593406593406593"
                     /psig="0.994005994005994"
                     /xcortree=3074
                     /SigmaFactorBS="tcacttttttggaatgaacagcctgcttttagaatagggTTt
                     ttttctgatggaaTTCTGTTAGAATAAAACATAcctatattgcgcatagaaaggatgg
                     a"
                     /listShort="yfkK, S274, yfkL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    843882..843889
                     /Source="Nicolas_upshift_promotors"
                     /id="U603"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.82017982017982"
                     /psig="0.994005994005994"
                     /xcortree=134
                     /SigmaFactorBS="gctgttcattccaaaaaagtgaagacatCAGTTGAAaagaaa
                     atgaacatCCTACTAAGATATTCATGAAggtttctttttagagaaataggggcaaaga
                     a"
                     /listShort="yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    843904..843923
                     /Source="Nicolas_upshift_promotors"
                     /id="U603"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.82017982017982"
                     /psig="0.994005994005994"
                     /xcortree=134
                     /SigmaFactorBS="gctgttcattccaaaaaagtgaagacatCAGTTGAAaagaaa
                     atgaacatCCTACTAAGATATTCATGAAggtttctttttagagaaataggggcaaaga
                     a"
                     /listShort="yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        843914
                     /Source="Nicolas_upshifts"
                     /id="U603"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.82017982017982"
                     /psig="0.994005994005994"
                     /xcortree=134
                     /SigmaFactorBS="gctgttcattccaaaaaagtgaagacatCAGTTGAAaagaaa
                     atgaacatCCTACTAAGATATTCATGAAggtttctttttagagaaataggggcaaaga
                     a"
                     /listShort="yfkJ, yfkI, yfkH, S275"
                     /GFF_Attribute="listLong"
     CDS             843972..844442
                     /gene="yfkJ"
                     /locus_tag="BSU_07880"
                     /old_locus_tag="BSU07880"
                     /EC_number="3.1.3.48"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15995210"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15995210; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase"
                     /protein_id="NP_388669.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07880"
                     /db_xref="EnsemblGenomes-Tr:CAB12617"
                     /db_xref="GOA:O35016"
                     /db_xref="InterPro:IPR017867"
                     /db_xref="InterPro:IPR023485"
                     /db_xref="InterPro:IPR036196"
                     /db_xref="PDB:4ETM"
                     /db_xref="SubtiList:BG12926"
                     /db_xref="UniProtKB/Swiss-Prot:O35016"
                     /translation="MISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGG
                     WHIGNPPHEGTQEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGF
                     KNTSHIKRLLDYVEDSDLADVPDPYYTGNFEEVCQLIKTGCEQLLASIQKEKQL*"
     gene            843972..844442
                     /gene="yfkJ"
                     /locus_tag="BSU_07880"
                     /old_locus_tag="BSU07880"
     CDS             844460..844780
                     /gene="yfkI"
                     /locus_tag="BSU_07890"
                     /old_locus_tag="BSU07890"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15995210"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388670.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07890"
                     /db_xref="EnsemblGenomes-Tr:CAB12618"
                     /db_xref="SubtiList:BG12925"
                     /db_xref="UniProtKB/Swiss-Prot:O34418"
                     /translation="MNNERLMLKGIFLGAAAGAALSLLHKPTRQACGMRWLTCKHKLS
                     LYKSNPELLKNTVITKVDEAKKLARTLSKEVDFVNQQVKELKKTTPQVMELVQETKEH
                     FSKK*"
     gene            844460..844780
                     /gene="yfkI"
                     /locus_tag="BSU_07890"
                     /old_locus_tag="BSU07890"
     CDS             844804..845631
                     /gene="rbn"
                     /locus_tag="BSU_07900"
                     /old_locus_tag="BSU07900"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11222749, 12794188,
                     15849754, 16850406, 15764599; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ribonuclease BN"
                     /protein_id="NP_388671.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07900"
                     /db_xref="EnsemblGenomes-Tr:CAB12619"
                     /db_xref="GOA:O34437"
                     /db_xref="InterPro:IPR017039"
                     /db_xref="SubtiList:BG12924"
                     /db_xref="UniProtKB/Swiss-Prot:O34437"
                     /translation="MSFLKELFSRYTLHEGQSKSAELAYFFLLSLFPFLIFMLTLTAY
                     LPLSTDDVLGVIEQYAPASAMSLVESITHQTLNNRNGGLLSFGIIAALWSASNGMNAI
                     VRSLNHAYDVEENRSFIIVRLTSIFLTIAMVFTILVALLLPVFGREIGRLASDFVGAS
                     DLFLSVWAAIRWGVSPLVLLIVFSALYVIAPNKKLSLRFVMPGAVFATIGWIIVSTLF
                     SFYVSTFANYSATYGSIGGIIVLMIWFYLSGILIILGGEINALLHKRKKLPDENPYH*
                     "
     gene            844804..845631
                     /gene="rbn"
                     /locus_tag="BSU_07900"
                     /old_locus_tag="BSU07900"
     promotor_-35    845610..845616
                     /Source="Nicolas_upshift_promotors"
                     /id="U604"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.974025974025974"
                     /psig="0.974025974025974"
                     /xcortree=847
                     /SigmaFactorBS="acataaacgtaaaaagcttccTGATGAAaatccctaccatta
                     GCGCACCCTATAaacgaacttcggttcaaaaagaagtcggggggatatcgtgatgacc
                     a"
                     /listShort="S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    845631..845642
                     /Source="Nicolas_upshift_promotors"
                     /id="U604"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.974025974025974"
                     /psig="0.974025974025974"
                     /xcortree=847
                     /SigmaFactorBS="acataaacgtaaaaagcttccTGATGAAaatccctaccatta
                     GCGCACCCTATAaacgaacttcggttcaaaaagaagtcggggggatatcgtgatgacc
                     a"
                     /listShort="S275"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       845649..845805
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_863681_863837"
                     /HighExp="S8, Etha, S6, Salt, S7, S5, ferm, nit, BT, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99976299999999996"
                     /TUshortSig="SigGF, SigA, SigB"
                     /TUshortPSig="0.974, 0.994, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S275"
     upshifts        845649
                     /Source="Nicolas_upshifts"
                     /id="U604"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.974025974025974"
                     /psig="0.974025974025974"
                     /xcortree=847
                     /SigmaFactorBS="acataaacgtaaaaagcttccTGATGAAaatccctaccatta
                     GCGCACCCTATAaacgaacttcggttcaaaaagaagtcggggggatatcgtgatgacc
                     a"
                     /listShort="S275"
                     /GFF_Attribute="listLong"
     downshifts      complement(845681)
                     /Source="Nicolas_upshifts"
                     /id="D393"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="1.22239"
                     /MaxDrop="3.61507"
                     /score="-5.45682213"
                     /energy="-3"
                     /TU="NA"
                     /idTUdmin="U606"
                     /TUdmin=440
                     /isTUend="FALSE"
     downshifts      845780
                     /Source="Nicolas_upshifts"
                     /id="D394"
                     /incds=0
                     /nref=144
                     /ntot=253
                     /MaxReadThrough="1.4253"
                     /MaxDrop="6.85849"
                     /score="25.8200126"
                     /energy="-17.9"
                     /TU="NA"
                     /idTUdmin="U603"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(845830..847005)
                     /gene="yfkF"
                     /locus_tag="BSU_07910"
                     /old_locus_tag="BSU07910"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388672.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07910"
                     /db_xref="EnsemblGenomes-Tr:CAB12620"
                     /db_xref="GOA:O34929"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12923"
                     /db_xref="UniProtKB/Swiss-Prot:O34929"
                     /translation="MSRFHFFILVLLVSISGFSQGMLLPVISIIFETNGESAAINGLH
                     ATGLYIGVLLASPFMEAPLRKLGFKPLIVMGGSIVILSLFGFIWLQSVWVWFLLRLFI
                     GIGDHMLHFSTQTWVTSMSSKQNRGRNLSIYGLSFGLGFAAGPFMVPLVKLSPSLPFI
                     VSGCISLFAWLFVFFLQNAYPETSPHETKSDNSFRRFYQAMLFGWVAFMPTFGYGFLE
                     TALNGSFPVYALRLGISVDAVAIILPAFAIGSIIFQFPLGILSDKYGRRNVLLVILLT
                     GALCFFIAGVFPSPYVIGGCFFIAGMAVGSTFTLGISYMTDLLPPHLLPAGNLLCGIT
                     FSLGSILGPVAGGWYMQTFESANLFYFITLTLSSVWLALVLGKPKSWSPAETYSSSS*
                     "
     gene            complement(845830..847005)
                     /gene="yfkF"
                     /locus_tag="BSU_07910"
                     /old_locus_tag="BSU07910"
     downshifts      complement(845835)
                     /Source="Nicolas_upshifts"
                     /id="D395"
                     /incds=0
                     /nref=1
                     /ntot=97
                     /MaxReadThrough="0.37084"
                     /MaxDrop="3.28031"
                     /score="3.2266059"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U606"
                     /TUdmin=286
                     /isTUend="FALSE"
     promotor_-35    846442..846448
                     /Source="Nicolas_upshift_promotors"
                     /id="U605"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=204
                     /SigmaFactorBS="cctgataaaatcgcctgaaactattgtctgatttGGTTTCAt
                     gaggactggtttccGGGTATGCATTTTGTAGAAagaaaacaaaaagccacgcaaacag
                     a"
                     /listShort="S276, yfkE, yfkD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    846464..846482
                     /Source="Nicolas_upshift_promotors"
                     /id="U605"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=204
                     /SigmaFactorBS="cctgataaaatcgcctgaaactattgtctgatttGGTTTCAt
                     gaggactggtttccGGGTATGCATTTTGTAGAAagaaaacaaaaagccacgcaaacag
                     a"
                     /listShort="S276, yfkE, yfkD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       846468..847121
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_864500_865153"
                     /HighExp="Etha, M9-stat, Salt, Sw, Gly, B60, Heat, LPhT,
                     HiTm, T0.30H"
                     /AntisenseName="yfkF"
                     /AntisenseCor="-0.18505347560608301"
                     /AntisenseRegPval="-2.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S276"
     upshifts        846468
                     /Source="Nicolas_upshifts"
                     /id="U605"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=204
                     /SigmaFactorBS="cctgataaaatcgcctgaaactattgtctgatttGGTTTCAt
                     gaggactggtttccGGGTATGCATTTTGTAGAAagaaaacaaaaagccacgcaaacag
                     a"
                     /listShort="S276, yfkE, yfkD"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(847030..847049)
                     /Source="Nicolas_upshift_promotors"
                     /id="U606"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.74925074925075"
                     /psig=1
                     /xcortree=3138
                     /SigmaFactorBS="gagggcaaatgtatagcgtgatataggcttttttcAGGTTGC
                     CtgcttttggaaaaCGTTGTACGATCAACATAGAttccatataaggagaactgacacg
                     a"
                     /listShort="yfkF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(847045)
                     /Source="Nicolas_upshifts"
                     /id="U606"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.74925074925075"
                     /psig=1
                     /xcortree=3138
                     /SigmaFactorBS="gagggcaaatgtatagcgtgatataggcttttttcAGGTTGC
                     CtgcttttggaaaaCGTTGTACGATCAACATAGAttccatataaggagaactgacacg
                     a"
                     /listShort="yfkF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(847063..847070)
                     /Source="Nicolas_upshift_promotors"
                     /id="U606"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.74925074925075"
                     /psig=1
                     /xcortree=3138
                     /SigmaFactorBS="gagggcaaatgtatagcgtgatataggcttttttcAGGTTGC
                     CtgcttttggaaaaCGTTGTACGATCAACATAGAttccatataaggagaactgacacg
                     a"
                     /listShort="yfkF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    847111..847116
                     /Source="Nicolas_upshift_promotors"
                     /id="U607"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.848151848151848"
                     /psig="0.848151848151848"
                     /xcortree=1179
                     /SigmaFactorBS="ggcaacctgaaaaaagcctatatcacgctatacatttgccct
                     cgtgtaATCATGaaggtttttgtgaaGAATAAAAATAAAACAAGTcataaaaaaggag
                     c"
                     /listShort="yfkE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        847123
                     /Source="Nicolas_upshifts"
                     /id="U607"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.848151848151848"
                     /psig="0.848151848151848"
                     /xcortree=1179
                     /SigmaFactorBS="ggcaacctgaaaaaagcctatatcacgctatacatttgccct
                     cgtgtaATCATGaaggtttttgtgaaGAATAAAAATAAAACAAGTcataaaaaaggag
                     c"
                     /listShort="yfkE"
                     /GFF_Attribute="listLong"
     promotor_-10    847131..847149
                     /Source="Nicolas_upshift_promotors"
                     /id="U607"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.848151848151848"
                     /psig="0.848151848151848"
                     /xcortree=1179
                     /SigmaFactorBS="ggcaacctgaaaaaagcctatatcacgctatacatttgccct
                     cgtgtaATCATGaaggtttttgtgaaGAATAAAAATAAAACAAGTcataaaaaaggag
                     c"
                     /listShort="yfkE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             847173..848228
                     /gene="chaA"
                     /locus_tag="BSU_07920"
                     /old_locus_tag="BSU07920"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 19543710, 23798403"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     19543710, 23798403; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="H+/Ca2+ antiporter"
                     /protein_id="NP_388673.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07920"
                     /db_xref="EnsemblGenomes-Tr:CAB12621"
                     /db_xref="GOA:O34840"
                     /db_xref="InterPro:IPR004713"
                     /db_xref="InterPro:IPR004798"
                     /db_xref="InterPro:IPR004837"
                     /db_xref="PDB:4KJR"
                     /db_xref="PDB:4KJS"
                     /db_xref="SubtiList:BG12922"
                     /db_xref="UniProtKB/Swiss-Prot:O34840"
                     /translation="MNRIFFILVAAGVPLSVIGSLMHWPSAVLFAVYCVTIIALASYM
                     GRATESLSIIAGPRIGGLLNATFGNAVELIISLFALKEGLTGIVLASLTGSVLGNLLL
                     VAGLSFFVGGLKYKRQEFNIHDARHNSGLLIFAIIVAFVIPEVFSVGMGNASKLNLSI
                     GISIIMILLYVAALYFKLVTHRGVYQPNNAAQTEEEEEPEWSGKVATIVLFAATIVVA
                     YISENLVHTFHSVAEQFGWSELFIGVIIVAIVGNAAEHASAIIMAFKNKMDIAVEIAV
                     GSTLQIAMFVAPVLVICSIFFPTSMPLVFTLPELVAMVSAVLLMIAISNDGDSNWFEG
                     ATLLAAYVIMAIGFFLL*"
     gene            847173..848228
                     /gene="chaA"
                     /locus_tag="BSU_07920"
                     /old_locus_tag="BSU07920"
     promotor_-35    848242..848248
                     /Source="Nicolas_upshift_promotors"
                     /id="U608"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=931
                     /SigmaFactorBS="gatcggctttttccttctttaacctgaaaaaatgaTGGATAA
                     caacaaagcgggatGAAAAGACTAAGggaaaatgccatagaaagagtgatatgatgaa
                     a"
                     /listShort="yfkD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    848263..848274
                     /Source="Nicolas_upshift_promotors"
                     /id="U608"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=931
                     /SigmaFactorBS="gatcggctttttccttctttaacctgaaaaaatgaTGGATAA
                     caacaaagcgggatGAAAAGACTAAGggaaaatgccatagaaagagtgatatgatgaa
                     a"
                     /listShort="yfkD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        848267
                     /Source="Nicolas_upshifts"
                     /id="U608"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=931
                     /SigmaFactorBS="gatcggctttttccttctttaacctgaaaaaatgaTGGATAA
                     caacaaagcgggatGAAAAGACTAAGggaaaatgccatagaaagagtgatatgatgaa
                     a"
                     /listShort="yfkD"
                     /GFF_Attribute="listLong"
     CDS             848299..849093
                     /gene="yfkD"
                     /locus_tag="BSU_07930"
                     /old_locus_tag="BSU07930"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 19543710"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388674.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07930"
                     /db_xref="EnsemblGenomes-Tr:CAB12622"
                     /db_xref="InterPro:IPR025548"
                     /db_xref="SubtiList:BG12921"
                     /db_xref="UniProtKB/Swiss-Prot:O34579"
                     /translation="MMKKLFHSTLIVLLFFSFFGVQPIHAKKQFKVPNSVASISKENT
                     YPNASQDQPMLQPSKLAKELLDHSEVKIENPHLIKMLNESNISGTPLAVGYRATIFLG
                     KWALGYESNETVANWEYKKINTNRADNRGGKETAEMHYAQEQQYRVKGGLTAKVPNAE
                     DVKSMMMQKAMKKTNLPLAFETVIGAGTKRDQIYKVAPKKIGYLHAYAPAVNEKGKVT
                     YGEVYLVLKGNKRKLVVKNVTSQGIGAWIPVQDHVTFGFQLSSLPR*"
     gene            848299..849093
                     /gene="yfkD"
                     /locus_tag="BSU_07930"
                     /old_locus_tag="BSU07930"
     downshifts      849081
                     /Source="Nicolas_upshifts"
                     /id="D396"
                     /incds=0
                     /nref=41
                     /ntot=100
                     /MaxReadThrough="0.82657"
                     /MaxDrop="5.7252"
                     /score="28.7014976"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U605"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(849132..849974)
                     /gene="mscC"
                     /locus_tag="BSU_07940"
                     /old_locus_tag="BSU07940"
                     /function="16.1: Circulate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17665170, 18310427, 19252899"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17665170, 18310427,
                     19252899; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="NP_388675.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07940"
                     /db_xref="EnsemblGenomes-Tr:CAB12623"
                     /db_xref="GOA:O35043"
                     /db_xref="InterPro:IPR006685"
                     /db_xref="InterPro:IPR010920"
                     /db_xref="InterPro:IPR011014"
                     /db_xref="SubtiList:BG12920"
                     /db_xref="UniProtKB/Swiss-Prot:O35043"
                     /translation="MRMKETLTEIFQNKIVDILLVAVILWIGVFIINRLVQLFFKRTD
                     FIEEKKEKTIESLVRSVTQYTATIGFIFYVISLFVHDFGKILAGAGVAGIVIGFGAQS
                     LIKDVLAGVFLIYERQLHKGDYVTVNNLFNGTVEEIGLRSLQIREWSGKLLTISNGEV
                     RQIENYNIDFMRITESFLISFKEDPDRVYSVLEEACDMLNEELRDSLKRDEFGNPTEP
                     FQIHGITALNKINRGVEFTVKGMVKDDDYFSASLAVRRVLVRQLYQNNVQMLEEAVRI
                     ERTQ*"
     gene            complement(849132..849974)
                     /gene="mscC"
                     /locus_tag="BSU_07940"
                     /old_locus_tag="BSU07940"
     downshifts      complement(849134)
                     /Source="Nicolas_upshifts"
                     /id="D397"
                     /incds=0
                     /nref=58
                     /ntot=230
                     /MaxReadThrough="1.96922"
                     /MaxDrop="4.8789"
                     /score="23.5281308"
                     /energy="-9.8"
                     /TU="NA"
                     /idTUdmin="U609"
                     /TUdmin=1
                     /isTUend="TRUE"
     CDS             complement(849975..851096)
                     /gene="yfkA"
                     /locus_tag="BSU_07955"
                     /old_locus_tag="BSU07955"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Fe-S oxidoreductase, radical SAM
                     superfamily"
                     /protein_id="NP_388677.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07955"
                     /db_xref="EnsemblGenomes-Tr:CAB12625"
                     /db_xref="GOA:O34400"
                     /db_xref="InterPro:IPR007197"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR014866"
                     /db_xref="InterPro:IPR031004"
                     /db_xref="InterPro:IPR034395"
                     /db_xref="SubtiList:BG12918"
                     /db_xref="UniProtKB/Swiss-Prot:O34400"
                     /translation="MTQNTKLRPITPEFDPWEAYMDVDQYGDMQLTNVEFTTTTLCNM
                     RCEHCAVGYTLQPKDPNALPIDLLLKRLEEIPRLRSISITGGEPMLSLKSVKEYVVPL
                     LKYAHERGVRTQINSNLTLDIERYEWIIPYLDVLHISHNWGTVEDFAEIGFAMMDRKP
                     TFEQRARYFEKMIENSRTLVDAGVMVSAETMLNKRTLPHIEHIHRQITEDMKCQRHEV
                     HPMYPSDFASALESLSLKEMRQAIHRLLDIRDENTWMLFGTLPFYACSPDEDDQKLLR
                     RLRAAKNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDTPPLGNIQTDSLPSAYEKWRET
                     KLAKELSCHCPNVRCLGPNVLVKNSYYQDTDFTKRQARS*"
     gene            complement(849975..851096)
                     /gene="yfkA"
                     /locus_tag="BSU_07955"
                     /old_locus_tag="BSU07955"
     promotor_-10    complement(851137..851156)
                     /Source="Nicolas_upshift_promotors"
                     /id="U609"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2517
                     /SigmaFactorBS="atggtagctcattttttgccgtttttcaatcgccgcgctACT
                     TGcgatcttggcaaatcAGGTCTAAAATTAACTGTTGgcagcgttagtatgcccattt
                     a"
                     /listShort="yfkA, yfkC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(851155)
                     /Source="Nicolas_upshifts"
                     /id="U609"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2517
                     /SigmaFactorBS="atggtagctcattttttgccgtttttcaatcgccgcgctACT
                     TGcgatcttggcaaatcAGGTCTAAAATTAACTGTTGgcagcgttagtatgcccattt
                     a"
                     /listShort="yfkA, yfkC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(851172..851176)
                     /Source="Nicolas_upshift_promotors"
                     /id="U609"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.942057942057942"
                     /psig=1
                     /xcortree=2517
                     /SigmaFactorBS="atggtagctcattttttgccgtttttcaatcgccgcgctACT
                     TGcgatcttggcaaatcAGGTCTAAAATTAACTGTTGgcagcgttagtatgcccattt
                     a"
                     /listShort="yfkA, yfkC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    851184..851191
                     /Source="Nicolas_upshift_promotors"
                     /id="U610"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=574
                     /SigmaFactorBS="ctgatttgccaagatcgcaagtagcgcggCGATTGAAaaacg
                     gcaaaaaaTGAGCTACCATAATAAAAAAtgaatggaggaacagaatggggaacgccgt
                     a"
                     /listShort="yfjT, pdaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    851205..851224
                     /Source="Nicolas_upshift_promotors"
                     /id="U610"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=574
                     /SigmaFactorBS="ctgatttgccaagatcgcaagtagcgcggCGATTGAAaaacg
                     gcaaaaaaTGAGCTACCATAATAAAAAAtgaatggaggaacagaatggggaacgccgt
                     a"
                     /listShort="yfjT, pdaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        851215
                     /Source="Nicolas_upshifts"
                     /id="U610"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=574
                     /SigmaFactorBS="ctgatttgccaagatcgcaagtagcgcggCGATTGAAaaacg
                     gcaaaaaaTGAGCTACCATAATAAAAAAtgaatggaggaacagaatggggaacgccgt
                     a"
                     /listShort="yfjT, pdaA"
                     /GFF_Attribute="listLong"
     CDS             851241..851426
                     /gene="yfjT"
                     /locus_tag="BSU_07970"
                     /old_locus_tag="BSU07970"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388678.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07970"
                     /db_xref="EnsemblGenomes-Tr:CAB12626"
                     /db_xref="SubtiList:BG12916"
                     /db_xref="UniProtKB/Swiss-Prot:O35041"
                     /translation="MGNAVNNKDQQIDYLKNRLDMFMNVIDSLDPEATDVEDIDRLIS
                     MLDDLEAKYERFKKDWE*"
     gene            851241..851426
                     /gene="yfjT"
                     /locus_tag="BSU_07970"
                     /old_locus_tag="BSU07970"
     downshifts      851405
                     /Source="Nicolas_upshifts"
                     /id="D398"
                     /incds=0
                     /nref=15
                     /ntot=177
                     /MaxReadThrough="3.03457"
                     /MaxDrop="3.24661"
                     /score="14.1645187"
                     /energy="-6.4"
                     /TU="U610"
                     /idTUdmin="U610"
                     /TUdmin="-559"
                     /isTUend="FALSE"
     promotor_-35    851469..851475
                     /Source="Nicolas_upshift_promotors"
                     /id="U611"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.95004995004995"
                     /psig="0.95004995004995"
                     /xcortree=930
                     /SigmaFactorBS="gaataaaaccgcgtgcccgccgcggtttttttattggcataa
                     agcaacAGTATAAaacaaagtctctatCTGTAAAATAAGaaaaaatgcagaaggagcg
                     c"
                     /listShort="pdaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        851481
                     /Source="Nicolas_upshifts"
                     /id="U611"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.95004995004995"
                     /psig="0.95004995004995"
                     /xcortree=930
                     /SigmaFactorBS="gaataaaaccgcgtgcccgccgcggtttttttattggcataa
                     agcaacAGTATAAaacaaagtctctatCTGTAAAATAAGaaaaaatgcagaaggagcg
                     c"
                     /listShort="pdaA"
                     /GFF_Attribute="listLong"
     promotor_-10    851490..851501
                     /Source="Nicolas_upshift_promotors"
                     /id="U611"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.95004995004995"
                     /psig="0.95004995004995"
                     /xcortree=930
                     /SigmaFactorBS="gaataaaaccgcgtgcccgccgcggtttttttattggcataa
                     agcaacAGTATAAaacaaagtctctatCTGTAAAATAAGaaaaaatgcagaaggagcg
                     c"
                     /listShort="pdaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             851527..852318
                     /gene="pdaA"
                     /locus_tag="BSU_07980"
                     /old_locus_tag="BSU07980"
                     /EC_number="3.5.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:14679227, 15687192"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14679227, 15687192;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="exported peptidoglycan N-acetylmuramic acid
                     deacetylase"
                     /protein_id="NP_388679.1"
                     /db_xref="EnsemblGenomes-Gn:BSU07980"
                     /db_xref="EnsemblGenomes-Tr:CAB12627"
                     /db_xref="GOA:O34928"
                     /db_xref="InterPro:IPR002509"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="InterPro:IPR014235"
                     /db_xref="PDB:1NY1"
                     /db_xref="PDB:1W17"
                     /db_xref="PDB:1W1A"
                     /db_xref="PDB:1W1B"
                     /db_xref="SubtiList:BG12915"
                     /db_xref="UniProtKB/Swiss-Prot:O34928"
                     /translation="MKWMCSICCAAVLLAGGAAQAEAVPNEPINWGFKRSVNHQPPDA
                     GKQLNSLIEKYDAFYLGNTKEKTIYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVTGH
                     FVKDQPQLIKRMSDEGHIIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNL
                     YLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKINNQKGKKYAYDHMIKQAHPGAI
                     YLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLMFEKEMRLPSL*"
     gene            851527..852318
                     /gene="pdaA"
                     /locus_tag="BSU_07980"
                     /old_locus_tag="BSU07980"
     downshifts      852316
                     /Source="Nicolas_upshifts"
                     /id="D399"
                     /incds=0
                     /nref=1
                     /ntot=36
                     /MaxReadThrough="2.12067"
                     /MaxDrop="3.4013"
                     /score="14.4741934"
                     /energy="-10.2"
                     /TU="NA"
                     /idTUdmin="U611"
                     /TUdmin=22
                     /isTUend="TRUE"
     CDS             complement(852356..853216)
                     /gene="yfjR"
                     /locus_tag="BSU_07990"
                     /old_locus_tag="BSU07990"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 20512483; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative beta-hydroxyacid dehydrogenase"
                     /protein_id="NP_388680.2"
                     /db_xref="EnsemblGenomes-Gn:BSU07990"
                     /db_xref="EnsemblGenomes-Tr:CAB12628"
                     /db_xref="GOA:O34969"
                     /db_xref="InterPro:IPR006115"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR013328"
                     /db_xref="InterPro:IPR015815"
                     /db_xref="InterPro:IPR029154"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12914"
                     /db_xref="UniProtKB/Swiss-Prot:O34969"
                     /translation="MKIAVIGLGNMGQPIARNVLQAGYELTVYNRTKQKTEDLVTEGA
                     QAADTPRLAAKSADIVITMLADDDSVSTVTFGEDGLLEGLAENGIHISMSTISVEFSE
                     KLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKPLLDSLSQQIFDV
                     GEESKTANAAKISINFLLVSMLEALSESFLMMEKYGLEQKQFLEIASALFGSPVYQNY
                     GTIMAEQKFEPAGFKMSLGLKDTNLALAAAKRVSANLPLAELAKSHFESGIEKGFGDL
                     DWAALIKCIK*"
     gene            complement(852356..853216)
                     /gene="yfjR"
                     /locus_tag="BSU_07990"
                     /old_locus_tag="BSU07990"
     downshifts      complement(852370)
                     /Source="Nicolas_upshifts"
                     /id="D400"
                     /incds=0
                     /nref=15
                     /ntot=193
                     /MaxReadThrough="2.61589"
                     /MaxDrop="3.98341"
                     /score="-1.3382901"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U612"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(853236..853255)
                     /Source="Nicolas_upshift_promotors"
                     /id="U612"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=1961
                     /SigmaFactorBS="agcgagcagctgttcttttttgttgtaagccgatcgCTATgc
                     atattctgttcatATTGTTTATAATGGAAAAAAtattcagggagtgattagattgaaa
                     a"
                     /listShort="yfjR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(853250)
                     /Source="Nicolas_upshifts"
                     /id="U612"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=1961
                     /SigmaFactorBS="agcgagcagctgttcttttttgttgtaagccgatcgCTATgc
                     atattctgttcatATTGTTTATAATGGAAAAAAtattcagggagtgattagattgaaa
                     a"
                     /listShort="yfjR"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(853271..853274)
                     /Source="Nicolas_upshift_promotors"
                     /id="U612"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig=1
                     /xcortree=1961
                     /SigmaFactorBS="agcgagcagctgttcttttttgttgtaagccgatcgCTATgc
                     atattctgttcatATTGTTTATAATGGAAAAAAtattcagggagtgattagattgaaa
                     a"
                     /listShort="yfjR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(853315..854274)
                     /gene="yfjQ"
                     /locus_tag="BSU_08000"
                     /old_locus_tag="BSU08000"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 14563871, 24415722; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation (octahedral coordination)
                     transporter"
                     /protein_id="NP_388681.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08000"
                     /db_xref="EnsemblGenomes-Tr:CAB12629"
                     /db_xref="GOA:O31543"
                     /db_xref="InterPro:IPR002523"
                     /db_xref="InterPro:IPR004488"
                     /db_xref="SubtiList:BG12913"
                     /db_xref="UniProtKB/Swiss-Prot:O31543"
                     /translation="MINITAITTEHQLLKNIPIERVEQPDIAWYWVDFYGPEDTETAL
                     LRDFFHFHPLAIEDCFQHMQRPKLDHYDGYRFYVIHALNKETLETEEVDIFQGEKFVV
                     TFHLHETPGIAKVRERLYASPDILKKGPGHISYMIMDQLVDEYFPLVYKIEDRLNEIE
                     ESRPHKTYGTLMNEVFDLRTDLLHLRRTIIPMRDLLYRILSLDHVKEQRETKAYFSDI
                     YDHLLKLSEIVESNRDMTSDLRDSYVTLNSNRMNAIMMTLTIVSTIFIPLTFIAGVYG
                     MNFDFMPELHWKYGYFAVLGLMAALVIGMLIWFVHKGWFNIFK*"
     gene            complement(853315..854274)
                     /gene="yfjQ"
                     /locus_tag="BSU_08000"
                     /old_locus_tag="BSU08000"
     downshifts      complement(853338)
                     /Source="Nicolas_upshifts"
                     /id="D401"
                     /incds=0
                     /nref=137
                     /ntot=224
                     /MaxReadThrough="2.29296"
                     /MaxDrop="4.2496"
                     /score="10.2736001"
                     /energy="-7.5"
                     /TU="NA"
                     /idTUdmin="U613"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(854285..854304)
                     /Source="Nicolas_upshift_promotors"
                     /id="U613"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.888111888111888"
                     /psig="0.993006993006993"
                     /xcortree=1816
                     /SigmaFactorBS="tggaattaggcagagagtaccgtatACTTttctcataaagac
                     cgCATGATATAATGGCAGGTGGagggttgtttatgatcaacattaccgcaatcacaac
                     a"
                     /listShort="yfjQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(854288)
                     /Source="Nicolas_upshifts"
                     /id="U613"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.888111888111888"
                     /psig="0.993006993006993"
                     /xcortree=1816
                     /SigmaFactorBS="tggaattaggcagagagtaccgtatACTTttctcataaagac
                     cgCATGATATAATGGCAGGTGGagggttgtttatgatcaacattaccgcaatcacaac
                     a"
                     /listShort="yfjQ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(854320..854323)
                     /Source="Nicolas_upshift_promotors"
                     /id="U613"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.888111888111888"
                     /psig="0.993006993006993"
                     /xcortree=1816
                     /SigmaFactorBS="tggaattaggcagagagtaccgtatACTTttctcataaagac
                     cgCATGATATAATGGCAGGTGGagggttgtttatgatcaacattaccgcaatcacaac
                     a"
                     /listShort="yfjQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    854335..854339
                     /Source="Nicolas_upshift_promotors"
                     /id="U614"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.832167832167832"
                     /psig="0.999000999001"
                     /xcortree=2271
                     /SigmaFactorBS="atgcggtctttatgagaaaagtatacggtactcTCTGCctaa
                     ttccagcggCATGTTATACTGAACAAAAAcggaaaaaagggtggatctcatgtggaag
                     g"
                     /listShort="yfjP, S277, yfjO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    854353..854372
                     /Source="Nicolas_upshift_promotors"
                     /id="U614"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.832167832167832"
                     /psig="0.999000999001"
                     /xcortree=2271
                     /SigmaFactorBS="atgcggtctttatgagaaaagtatacggtactcTCTGCctaa
                     ttccagcggCATGTTATACTGAACAAAAAcggaaaaaagggtggatctcatgtggaag
                     g"
                     /listShort="yfjP, S277, yfjO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        854362
                     /Source="Nicolas_upshifts"
                     /id="U614"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.832167832167832"
                     /psig="0.999000999001"
                     /xcortree=2271
                     /SigmaFactorBS="atgcggtctttatgagaaaagtatacggtactcTCTGCctaa
                     ttccagcggCATGTTATACTGAACAAAAAcggaaaaaagggtggatctcatgtggaag
                     g"
                     /listShort="yfjP, S277, yfjO"
                     /GFF_Attribute="listLong"
     CDS             854393..855256
                     /gene="yfjP"
                     /locus_tag="BSU_08010"
                     /old_locus_tag="BSU08010"
                     /EC_number="3.2.2.21"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-3-methyladenine glycosylase"
                     /protein_id="NP_388682.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08010"
                     /db_xref="EnsemblGenomes-Tr:CAB12630"
                     /db_xref="GOA:O31544"
                     /db_xref="InterPro:IPR003265"
                     /db_xref="InterPro:IPR011257"
                     /db_xref="InterPro:IPR023170"
                     /db_xref="SubtiList:BG12912"
                     /db_xref="UniProtKB/Swiss-Prot:O31544"
                     /translation="MWKEKVSVTPPYHFDRVLDRLSLDPLNAVDREAREVRVPIRNQA
                     GDVCIVKVQALGHAGEPEFLVSGETDQGEMMKEIKRIFQWENHLQHVLDHFSKTSLSA
                     IFEEHAGTPLVLDYSVYNCMMKCIIHQQLNLSFAYTLTERFVHAFGEQKDGVWCYPKP
                     ETIAELDYQDLRDLQFSMRKAEYTIDTSRMIAEGTLSLSELPHMADEDIMKKLIKIRG
                     IGPWTVQNVLMFGLGRPNLFPLADIGLQNAIKRHFQLDDKPAKDVMLAMSKEWEPYLS
                     YASLYLWRSIE*"
     gene            854393..855256
                     /gene="yfjP"
                     /locus_tag="BSU_08010"
                     /old_locus_tag="BSU08010"
     S_feature       855257..855369
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_873289_873401"
                     /HighExp="BC, M40t90, LBGtran, C90, M9-stat, M0t90,
                     Lbtran, Sw, M40t45, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S277"
     CDS             855370..856770
                     /gene="yfjO"
                     /locus_tag="BSU_08020"
                     /old_locus_tag="BSU08020"
                     /EC_number="2.1.1.-"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA methyltransferase"
                     /protein_id="NP_388683.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08020"
                     /db_xref="EnsemblGenomes-Tr:CAB12631"
                     /db_xref="GOA:O31545"
                     /db_xref="InterPro:IPR001566"
                     /db_xref="InterPro:IPR002792"
                     /db_xref="InterPro:IPR010280"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR029063"
                     /db_xref="InterPro:IPR030390"
                     /db_xref="InterPro:IPR030391"
                     /db_xref="SubtiList:BG12911"
                     /db_xref="UniProtKB/Swiss-Prot:O31545"
                     /translation="MNQQKKQAPVELKVGQTFPLTIKRLGINGEGVGYFKKKVVFVPG
                     ALPGEEVVVQATKVQPKFSEGRIKKIRKASEHRVAPPCPVYEQCGGCQLQHLAYSQQL
                     REKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNKSQFQIGRSQSGSIIAGLYG
                     LDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRTIVTRVGFET
                     GEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIFGEKTKQLAGKT
                     VIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMW
                     VADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPKWTKEGFRPDVVI
                     VDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQTLSKDYRVDYIQPVDMFPQ
                     TAHVEAVARLVLKSSN*"
     gene            855370..856770
                     /gene="yfjO"
                     /locus_tag="BSU_08020"
                     /old_locus_tag="BSU08020"
     downshifts      856782
                     /Source="Nicolas_upshifts"
                     /id="D402"
                     /incds=0
                     /nref=198
                     /ntot=251
                     /MaxReadThrough="1.18186"
                     /MaxDrop="5.19313"
                     /score="11.8630961"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U614"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    857076..857083
                     /Source="Nicolas_upshift_promotors"
                     /id="U615"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2924
                     /SigmaFactorBS="tagatgtattttcataatttgtaaaattataTATTGACTtgc
                     agttattacgtgTGAAATATTGATGATAGGAAtataaggaaagtatggcgtatatcat
                     t"
                     /listShort="S278, yfzA, S279"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    857099..857118
                     /Source="Nicolas_upshift_promotors"
                     /id="U615"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2924
                     /SigmaFactorBS="tagatgtattttcataatttgtaaaattataTATTGACTtgc
                     agttattacgtgTGAAATATTGATGATAGGAAtataaggaaagtatggcgtatatcat
                     t"
                     /listShort="S278, yfzA, S279"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        857105
                     /Source="Nicolas_upshifts"
                     /id="U615"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98901098901099"
                     /psig=1
                     /xcortree=2924
                     /SigmaFactorBS="tagatgtattttcataatttgtaaaattataTATTGACTtgc
                     agttattacgtgTGAAATATTGATGATAGGAAtataaggaaagtatggcgtatatcat
                     t"
                     /listShort="S278, yfzA, S279"
                     /GFF_Attribute="listLong"
     S_feature       857112..857395
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_875144_875427"
                     /HighExp="M9-stat, T1.30H, T0.30H, T2.0H, LoTm, T3.0H,
                     T3.30H, T1.0H, T2.30H, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.69102300000000005"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S278"
     CDS             857396..857662
                     /gene="yfzA"
                     /locus_tag="BSU_08029"
                     /old_locus_tag="BSU08029"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097694.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08029"
                     /db_xref="EnsemblGenomes-Tr:CAX52581"
                     /db_xref="GOA:C0H3X6"
                     /db_xref="InterPro:IPR025627"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X6"
                     /translation="MDKVYKRSWFQTFLAFLVSQLYFNFVELTGWGPKYREMNGFPAN
                     IVELDFFQTYLSFYDNPWFNIITVFLGVFTIIQIITGITKDIRN*"
     gene            857396..857662
                     /gene="yfzA"
                     /locus_tag="BSU_08029"
                     /old_locus_tag="BSU08029"
     promotor_-10    complement(857610..857629)
                     /Source="Nicolas_upshift_promotors"
                     /id="U616"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig=1
                     /xcortree=2926
                     /SigmaFactorBS="taaataaggcatcagaagttattgctttaatttcgaatatcC
                     TTTgttatccctgtaatTATTTGTATAATAGTGAAAActcccaagaaaacagtaataa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(857628)
                     /Source="Nicolas_upshifts"
                     /id="U616"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig=1
                     /xcortree=2926
                     /SigmaFactorBS="taaataaggcatcagaagttattgctttaatttcgaatatcC
                     TTTgttatccctgtaatTATTTGTATAATAGTGAAAActcccaagaaaacagtaataa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(857644..857647)
                     /Source="Nicolas_upshift_promotors"
                     /id="U616"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.936063936063936"
                     /psig=1
                     /xcortree=2926
                     /SigmaFactorBS="taaataaggcatcagaagttattgctttaatttcgaatatcC
                     TTTgttatccctgtaatTATTTGTATAATAGTGAAAActcccaagaaaacagtaataa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       857663..858144
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_875695_876176"
                     /HighExp="G180, Paraq, H2O2, G135, Oxctl, G150, C30, LoTm,
                     S8, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S279"
     promotor_-35    858115..858118
                     /Source="Nicolas_upshift_promotors"
                     /id="U617"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.591408591408591"
                     /psig=1
                     /xcortree=2598
                     /SigmaFactorBS="atcttcaataacagggcaattattttgcgTTGGtaatatgga
                     gaactcaTATGATATTCTATTTAGGTTggaatcctttttatccaaaaagttcaaaagc
                     a"
                     /listShort="S280, dusC, S281, yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    858135..858154
                     /Source="Nicolas_upshift_promotors"
                     /id="U617"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.591408591408591"
                     /psig=1
                     /xcortree=2598
                     /SigmaFactorBS="atcttcaataacagggcaattattttgcgTTGGtaatatgga
                     gaactcaTATGATATTCTATTTAGGTTggaatcctttttatccaaaaagttcaaaagc
                     a"
                     /listShort="S280, dusC, S281, yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       858146..858393
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_876178_876425"
                     /HighExp="H2O2, G180, Paraq, G150, G135, Oxctl, dia15,
                     LBGstat, LBGexp, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S280"
     upshifts        858146
                     /Source="Nicolas_upshifts"
                     /id="U617"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.591408591408591"
                     /psig=1
                     /xcortree=2598
                     /SigmaFactorBS="atcttcaataacagggcaattattttgcgTTGGtaatatgga
                     gaactcaTATGATATTCTATTTAGGTTggaatcctttttatccaaaaagttcaaaagc
                     a"
                     /listShort="S280, dusC, S281, yfjM, yfjL"
                     /GFF_Attribute="listLong"
     CDS             858394..859371
                     /gene="dusC"
                     /locus_tag="BSU_08030"
                     /old_locus_tag="BSU08030"
                     /EC_number="1.-.-.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11983710, 25902496; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase 2"
                     /protein_id="NP_388684.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08030"
                     /db_xref="EnsemblGenomes-Tr:CAB12632"
                     /db_xref="GOA:O31546"
                     /db_xref="InterPro:IPR001269"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR018517"
                     /db_xref="InterPro:IPR024036"
                     /db_xref="InterPro:IPR035587"
                     /db_xref="SubtiList:BG12910"
                     /db_xref="UniProtKB/Swiss-Prot:O31546"
                     /translation="MTENFWRELPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEF
                     TNSESYCHPDGKDSVRGRLTFTEDEQPIVAHIWGDKPENFRKMSIGMAELGFKGLDIN
                     MGCPVPNVAGNGKGSGLICRPAVAAELIQAAKAGGLPVSVKTRLGYTDVDEWREWLTH
                     ILKQDIANLSIHLRTRAEMSKVDAHWELIPEIKKLRDEVAPDTLLTINGDIPDRQTGL
                     KLAEQYGVDGIMIGRGIFTNPFAFEKEPKEHSSKELLDLLRLHLDLHDEYSKEEARPY
                     KPLPRFFKIYLRGFRGASELRNQCMNTKSTDEVRALLDDFERKYLDGIE*"
     gene            858394..859371
                     /gene="dusC"
                     /locus_tag="BSU_08030"
                     /old_locus_tag="BSU08030"
     S_feature       859372..859464
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_877404_877496"
                     /HighExp="G135, G180, Paraq, G150, H2O2, LBGexp, aero,
                     dia0, Oxctl, dia15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S281"
     downshifts      859421
                     /Source="Nicolas_upshifts"
                     /id="D403"
                     /incds=0
                     /nref=86
                     /ntot=218
                     /MaxReadThrough="3.30163"
                     /MaxDrop="4.0519"
                     /score="11.8630961"
                     /energy="-12.6"
                     /TU="U617"
                     /idTUdmin="U618"
                     /TUdmin="-1211"
                     /isTUend="FALSE"
     promotor_-35    859505..859511
                     /Source="Nicolas_upshift_promotors"
                     /id="U618"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig="0.999000999001"
                     /xcortree=3192
                     /SigmaFactorBS="gtacgcagcttttactcagcctgtcttttctctAATTTATtg
                     taagaaaatAATGGTATATTTAGTGGAGAtatcatataaagggggagaggaaaatgaa
                     a"
                     /listShort="yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    859523..859542
                     /Source="Nicolas_upshift_promotors"
                     /id="U618"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig="0.999000999001"
                     /xcortree=3192
                     /SigmaFactorBS="gtacgcagcttttactcagcctgtcttttctctAATTTATtg
                     taagaaaatAATGGTATATTTAGTGGAGAtatcatataaagggggagaggaaaatgaa
                     a"
                     /listShort="yfjM, yfjL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        859532
                     /Source="Nicolas_upshifts"
                     /id="U618"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.994005994005994"
                     /psig="0.999000999001"
                     /xcortree=3192
                     /SigmaFactorBS="gtacgcagcttttactcagcctgtcttttctctAATTTATtg
                     taagaaaatAATGGTATATTTAGTGGAGAtatcatataaagggggagaggaaaatgaa
                     a"
                     /listShort="yfjM, yfjL"
                     /GFF_Attribute="listLong"
     CDS             859567..860019
                     /gene="yfjM"
                     /locus_tag="BSU_08040"
                     /old_locus_tag="BSU08040"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388685.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08040"
                     /db_xref="EnsemblGenomes-Tr:CAB12633"
                     /db_xref="SubtiList:BG12909"
                     /db_xref="UniProtKB/Swiss-Prot:O31547"
                     /translation="MKRLCIIPCGKKKIWDVQPDAGPVRAEDAYLSPFHQACERYAKT
                     FFDEWVILSAKHGFLRPDDLVSGNYDVTFGTGHPEIMTADELRRQFHEKGFSDIEELV
                     MLGGKKYRSVLNAVIGEHQHISWPLSSYKGIGYMLQALNRAVEEKHEL*"
     gene            859567..860019
                     /gene="yfjM"
                     /locus_tag="BSU_08040"
                     /old_locus_tag="BSU08040"
     CDS             860049..860738
                     /gene="yfjL"
                     /locus_tag="BSU_08050"
                     /old_locus_tag="BSU08050"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388686.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08050"
                     /db_xref="EnsemblGenomes-Tr:CAB12634"
                     /db_xref="InterPro:IPR020523"
                     /db_xref="SubtiList:BG11034"
                     /db_xref="UniProtKB/Swiss-Prot:P40773"
                     /translation="MKKLVFGLLAIVLFGCGLYIYHVWFGDPFSKNAAEQKLVSYVKQ
                     TYPKKEIKITNGVYNAKTSEYVFEATSQSHRYPMCTKGFLHPKVTCDGIEEAYTESVA
                     KHVNEEATKAIEADLKKAVPRFIKADAALSIENGQFTLDTKWNKKLAEKAPMSMTIQL
                     DASGLSKTDAAKMAETVRKTLNEKGYTYSNGTIDCMQKDGDGGIGYVKYSIDFLSKAA
                     IQSNDAEELGS*"
     gene            860049..860738
                     /gene="yfjL"
                     /locus_tag="BSU_08050"
                     /old_locus_tag="BSU08050"
     downshifts      860743
                     /Source="Nicolas_upshifts"
                     /id="D404"
                     /incds=0
                     /nref=31
                     /ntot=205
                     /MaxReadThrough="0.02745"
                     /MaxDrop="3.61164"
                     /score="23.9796437"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U617"
                     /TUdmin=1
                     /isTUend="TRUE"
     misc_feature    860915..860933
                     /Source="Nicolas_upshift_promotors"
                     /id="U619"
                     /multdbtbs="SigL"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.878121878121878"
                     /psig="0.878121878121878"
                     /xcortree=351
                     /SigmaFactorBS="caaactgtctccaaagtgaagatgagaagactgattttacgg
                     gctcaaaagacTGGCACACTTCTTGCATTTataatggtgaaccctaaatagaaggagg
                     c"
                     /listShort="acoA, acoB, acoC, acoL, acoR, sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        860922
                     /Source="Nicolas_upshifts"
                     /id="U619"
                     /multdbtbs="SigL"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.878121878121878"
                     /psig="0.878121878121878"
                     /xcortree=351
                     /SigmaFactorBS="caaactgtctccaaagtgaagatgagaagactgattttacgg
                     gctcaaaagacTGGCACACTTCTTGCATTTataatggtgaaccctaaatagaaggagg
                     c"
                     /listShort="acoA, acoB, acoC, acoL, acoR, sspH"
                     /GFF_Attribute="listLong"
     CDS             860970..861971
                     /gene="acoA"
                     /locus_tag="BSU_08060"
                     /old_locus_tag="BSU08060"
                     /EC_number="1.1.1.303"
                     /EC_number="2.3.1.190"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10368162, 11274109, 22714279"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10368162, 11274109,
                     22714279; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin dehydrogenase E1 component
                     (TPP-dependent alpha subunit)"
                     /protein_id="NP_388687.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08060"
                     /db_xref="EnsemblGenomes-Tr:CAB12635"
                     /db_xref="GOA:O31404"
                     /db_xref="InterPro:IPR001017"
                     /db_xref="InterPro:IPR029061"
                     /db_xref="SubtiList:BG12558"
                     /db_xref="UniProtKB/Swiss-Prot:O31404"
                     /translation="MKLLKREGLSLTEEKALWMYQKMLEIRGFEDKVHELFAQGVLPG
                     FVHLYAGEEAVAVGVCAHLHDGDSITSTHRGHGHCIAKGCDLDGMMAEIFGKATGLCK
                     GKGGSMHIADLDKGMLGANGIVGGGFTLACGSALTAKYKQTKNVSVCFFGDGANNQGT
                     FHEGLNLAAVWNLPVVFVAENNGYGEATPFEYASACDSIADRAAAYNMPGVTVDGKDI
                     LAVYQAAEEAIERARNGGGPSLIECMTYRNYGHFEGDAQTYKTKDERVEHLEEKDAIQ
                     GFKNYLLKETDANKLSDIEQRVSESIEKAVSFSEDSPYPKDSELLTDVYVSYEKGGM*
                     "
     gene            860970..861971
                     /gene="acoA"
                     /locus_tag="BSU_08060"
                     /old_locus_tag="BSU08060"
     CDS             861975..863003
                     /gene="acoB"
                     /locus_tag="BSU_08070"
                     /old_locus_tag="BSU08070"
                     /EC_number="1.1.1.303"
                     /EC_number="2.3.1.190"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11274109, 10368162"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11274109, 10368162;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin dehydrogenase E1 component
                     (TPP-dependent beta subunit)"
                     /protein_id="NP_388688.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08070"
                     /db_xref="EnsemblGenomes-Tr:CAB12636"
                     /db_xref="GOA:O34591"
                     /db_xref="InterPro:IPR005475"
                     /db_xref="InterPro:IPR009014"
                     /db_xref="InterPro:IPR029061"
                     /db_xref="InterPro:IPR033248"
                     /db_xref="SubtiList:BG12559"
                     /db_xref="UniProtKB/Swiss-Prot:O34591"
                     /translation="MARVISMSDAINEAMKLAMRKDENVLLIGEDVAGGAAVDHLQDD
                     EAWGGVLGVTKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGT
                     CFDQVINQGAKFRYMFGGKAQVPITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVV
                     PSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMKGEVPEDYYTIPLGKADIKREGNDVT
                     LFAVGKQVNTALEAAAQLSERGIEAEVLDPRSLSPLDEDAIFTSLEKTNRLIIIDEAN
                     PRCSIATDIAALVADKGFDLLDAPIKRITAPHTPVPFSPVLEDQYLPTPDKIVSVTLE
                     LLGEPALN*"
     gene            861975..863003
                     /gene="acoB"
                     /locus_tag="BSU_08070"
                     /old_locus_tag="BSU08070"
     CDS             863017..864213
                     /gene="acoC"
                     /locus_tag="BSU_08080"
                     /old_locus_tag="BSU08080"
                     /EC_number="2.3.1.12"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10368162, 11274109"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10368162, 11274109;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin dehydrogenase E2 component
                     (dihydrolipoamide acetyltransferase)"
                     /protein_id="NP_388689.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08080"
                     /db_xref="EnsemblGenomes-Tr:CAB12637"
                     /db_xref="GOA:O31550"
                     /db_xref="InterPro:IPR000089"
                     /db_xref="InterPro:IPR001078"
                     /db_xref="InterPro:IPR004167"
                     /db_xref="InterPro:IPR011053"
                     /db_xref="InterPro:IPR036625"
                     /db_xref="SubtiList:BG12560"
                     /db_xref="UniProtKB/Swiss-Prot:O31550"
                     /translation="MAVKVVMPKLGMAMKQGEVSIWNKKVGDPVEKGESIASIQSEKI
                     EMEIEAPEKGTLIDIKVKEGEEVPPGTAICYIGDANESVQEEAGAPVAEDNMPQAVQP
                     VKQENKPAASKKDRMKISPVARKIAEKAGLDLKQLKGTGPGGRIVKDDVTKALAEQKK
                     DQAKPVSEQKAQEIPVTGMRKVIAARMQESLANSAQLTITMKADITKLATLQKQLSPT
                     AEERYGTKLTITHFVSRAAVLALQAHPVLNSFYQNERIITHPHVHLGMAVALENGLVV
                     PVIRHAEKLSLIELAQSISENAKKAREGRAGSEELQGSTFSITNLGAFGVEHFTPILN
                     PPETGILGIGASYDTPVYQGEEIVRSTILPLSLTFDHRACDGAPAAAFLKAMKTYLEE
                     PAALIL*"
     gene            863017..864213
                     /gene="acoC"
                     /locus_tag="BSU_08080"
                     /old_locus_tag="BSU08080"
     downshifts      complement(863018)
                     /Source="Nicolas_upshifts"
                     /id="D405"
                     /incds=0
                     /nref=8
                     /ntot=46
                     /MaxReadThrough="0.481579999999999"
                     /MaxDrop="4.16582"
                     /score="-0.0231058321"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U623"
                     /TUdmin=4796
                     /isTUend="FALSE"
     CDS             864234..865610
                     /gene="acoL"
                     /locus_tag="BSU_08090"
                     /old_locus_tag="BSU08090"
                     /EC_number="1.8.1.4"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11274109, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11274109, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin dehydrogenase E3 component
                     (dihydrolipoamide dehydrogenase)"
                     /protein_id="NP_388690.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08090"
                     /db_xref="EnsemblGenomes-Tr:CAB12638"
                     /db_xref="GOA:O34324"
                     /db_xref="InterPro:IPR001100"
                     /db_xref="InterPro:IPR004099"
                     /db_xref="InterPro:IPR006258"
                     /db_xref="InterPro:IPR012999"
                     /db_xref="InterPro:IPR016156"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG12561"
                     /db_xref="UniProtKB/Swiss-Prot:O34324"
                     /translation="MTLAIIGGGPAGYAAAVSAAQQGRNVLLIDKGKLGGTCLNEGCI
                     PTKSLLESANVLDKIKHADSFGIELPAGAISVDWSKMQSRKQQVVSQLVQGVQYLMKK
                     NQIQVVKGTASFLSERKLLIEGENGKEIREADQVLIASGSEPIELPFAPFDGEWILDS
                     KDALSLSEIPSSLVIVGGGVIGCEYAGLFARLGSQVTIIETADRLIPAEDEDIARLFQ
                     EKLEEDGVEVHTSSRLGRVDQTAKTAIWKSGQREFKTKADYVLVAIGRKPRLDGLQLE
                     QAGVDFSPKGIPVNGHMQTNVPHIYACGDAIGGIQLAHAAFHEGIIAASHASGRDVKI
                     NEKHVPRCIYTSPEIACIGMTERQARSIYGDVKIGEFSFSANGKALIKQQAEGKVKIM
                     AEPEFGEIVGVSMIGPDVTELIGQAAAIMNGEMTADMAEHFIAAHPTLSETLHEALLS
                     TIGLAVHA*"
     gene            864234..865610
                     /gene="acoL"
                     /locus_tag="BSU_08090"
                     /old_locus_tag="BSU08090"
     downshifts      865604
                     /Source="Nicolas_upshifts"
                     /id="D406"
                     /incds=0
                     /nref=27
                     /ntot=56
                     /MaxReadThrough="5.75671"
                     /MaxDrop="5.6153"
                     /score="27.0133719"
                     /energy="-14.7"
                     /TU="U619"
                     /idTUdmin="U619"
                     /TUdmin="-2156"
                     /isTUend="FALSE"
     promotor_-35    865657..865664
                     /Source="Nicolas_upshift_promotors"
                     /id="U620"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig=1
                     /xcortree=368
                     /SigmaFactorBS="ggcgcatggatataaggcgcctgcttttttatTGTTGAAAgc
                     gctttattttTCCCCTACAATAGATGAAAAcggcgtgtaagggaggagcgatcaagga
                     a"
                     /listShort="acoR, sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    865677..865696
                     /Source="Nicolas_upshift_promotors"
                     /id="U620"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig=1
                     /xcortree=368
                     /SigmaFactorBS="ggcgcatggatataaggcgcctgcttttttatTGTTGAAAgc
                     gctttattttTCCCCTACAATAGATGAAAAcggcgtgtaagggaggagcgatcaagga
                     a"
                     /listShort="acoR, sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        865685
                     /Source="Nicolas_upshifts"
                     /id="U620"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.57942057942058"
                     /psig=1
                     /xcortree=368
                     /SigmaFactorBS="ggcgcatggatataaggcgcctgcttttttatTGTTGAAAgc
                     gctttattttTCCCCTACAATAGATGAAAAcggcgtgtaagggaggagcgatcaagga
                     a"
                     /listShort="acoR, sspH"
                     /GFF_Attribute="listLong"
     CDS             865726..867543
                     /gene="acoR"
                     /locus_tag="BSU_08100"
                     /old_locus_tag="BSU08100"
                     /experiment="publication(s) with functional evidences,
                     PMID:11274109, 16944132"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11274109, 16944132;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (AcoR-acetoin)"
                     /protein_id="NP_388691.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08100"
                     /db_xref="EnsemblGenomes-Tr:CAB12639"
                     /db_xref="GOA:O31551"
                     /db_xref="InterPro:IPR002078"
                     /db_xref="InterPro:IPR002197"
                     /db_xref="InterPro:IPR003018"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR025944"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR029016"
                     /db_xref="SubtiList:BG11790"
                     /db_xref="UniProtKB/Swiss-Prot:O31551"
                     /translation="MNSVPNDLQTWKRFVKDGVLDEARLRKRIAESWHRCKKAEVNPY
                     LEKGPKVLQQTELDQQSKKHSFFLTTAKPYLEKLLPAIKEMEMMALLIDSDGVVLALD
                     GHPRALYEAKRINFVEGACWTETAVGTNAIGTALHISEPVAIQGSEHYSIASHLWNCS
                     AAPIHHEDGSLAGVIDISCPAAGAHPHMLGIATAIAYAAERELAAKSREKELELISRF
                     GERAASSVPMVLCNTKQHIISASMPIRTSMPDWQGRHLYELKERGYSIENAVTIGDGG
                     TCFYLSEQKKKKAFRFNGVIGQSGRSQAMLMHLERAAATDASVCLSGETGTGKEVAAR
                     ALHENSERRHGPFVAVNCGAIPSDLIESELFGYAEGAFTGAKRNGYKGAFQKANQGTL
                     FLDEIGEISHSMQVALLRVLQERKITPIGGTKEIPVDIRVIAATHCDLRELAENGKIR
                     EDLFYRLHVYPIELPPLRDRTEDIPDLFEYYKQKNHWPGDLPSDFCNVLKQWKWPGNI
                     RELFNVFERLSIRFPDGRLRDESLPALLEAAGLPASSAEKKPAAAGVLTFREQIQKDM
                     MIKALESAKGNVSQAAKISGIPRSTFYKRLKKFNLSAES*"
     gene            865726..867543
                     /gene="acoR"
                     /locus_tag="BSU_08100"
                     /old_locus_tag="BSU08100"
     promotor_-35    867544..867550
                     /Source="Nicolas_upshift_promotors"
                     /id="U621"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=916
                     /SigmaFactorBS="tacaaacgcctgaaaaaattcaacttgtccgctgaatcataa
                     AGCATACttccttcaggaaatGGAAACGTTATGtattgaaggagggtgttacgatgaa
                     t"
                     /listShort="sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        867562
                     /Source="Nicolas_upshifts"
                     /id="U621"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=916
                     /SigmaFactorBS="tacaaacgcctgaaaaaattcaacttgtccgctgaatcataa
                     AGCATACttccttcaggaaatGGAAACGTTATGtattgaaggagggtgttacgatgaa
                     t"
                     /listShort="sspH"
                     /GFF_Attribute="listLong"
     promotor_-10    867565..867576
                     /Source="Nicolas_upshift_promotors"
                     /id="U621"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=916
                     /SigmaFactorBS="tacaaacgcctgaaaaaattcaacttgtccgctgaatcataa
                     AGCATACttccttcaggaaatGGAAACGTTATGtattgaaggagggtgttacgatgaa
                     t"
                     /listShort="sspH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             867597..867776
                     /gene="sspH"
                     /locus_tag="BSU_08110"
                     /old_locus_tag="BSU08110"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:10333516"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10333516; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein"
                     /protein_id="NP_388692.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08110"
                     /db_xref="EnsemblGenomes-Tr:CAB12640"
                     /db_xref="GOA:O31552"
                     /db_xref="InterPro:IPR012610"
                     /db_xref="SubtiList:BG12917"
                     /db_xref="UniProtKB/Swiss-Prot:O31552"
                     /translation="MNIQRAKEIVESPDMKKVTYNGVPIYIQHVNEETGTARIYPLDE
                     PQEEHEVQLNSLKED*"
     gene            867597..867776
                     /gene="sspH"
                     /locus_tag="BSU_08110"
                     /old_locus_tag="BSU08110"
     downshifts      867760
                     /Source="Nicolas_upshifts"
                     /id="D407"
                     /incds=0
                     /nref=96
                     /ntot=181
                     /MaxReadThrough="1.9176"
                     /MaxDrop="6.06509"
                     /score="5.08326573"
                     /energy="-12"
                     /TU="NA"
                     /idTUdmin="U619"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(867812..868141)
                     /gene="yfjF"
                     /locus_tag="BSU_08120"
                     /old_locus_tag="BSU08120"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388693.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08120"
                     /db_xref="EnsemblGenomes-Tr:CAB12641"
                     /db_xref="GOA:O31553"
                     /db_xref="InterPro:IPR003844"
                     /db_xref="SubtiList:BG12908"
                     /db_xref="UniProtKB/Swiss-Prot:O31553"
                     /translation="MMLITILLFLAAGLAEIGGGYLVWLWLREAKPAGYGIAGALILI
                     VYGILPTFQSFPSFGRVYAAYGGVFIVLAVLWGWLVDRKTPDLYDWIGAFICLIGVCV
                     ILFAPRG*"
     gene            complement(867812..868141)
                     /gene="yfjF"
                     /locus_tag="BSU_08120"
                     /old_locus_tag="BSU08120"
     downshifts      complement(867826)
                     /Source="Nicolas_upshifts"
                     /id="D408"
                     /incds=0
                     /nref=96
                     /ntot=245
                     /MaxReadThrough="2.05328"
                     /MaxDrop="6.2642"
                     /score="34.1179702"
                     /energy="-15.8"
                     /TU="NA"
                     /idTUdmin="U623"
                     /TUdmin="-12"
                     /isTUend="TRUE"
     CDS             complement(868191..868649)
                     /gene="yfjE"
                     /locus_tag="BSU_08130"
                     /old_locus_tag="BSU08130"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388694.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08130"
                     /db_xref="EnsemblGenomes-Tr:CAB12642"
                     /db_xref="GOA:O31554"
                     /db_xref="InterPro:IPR035324"
                     /db_xref="SubtiList:BG12907"
                     /db_xref="UniProtKB/Swiss-Prot:O31554"
                     /translation="MSEALTFESKYALLYLGGGLLAMIYGLITFFMAFPAFTSRGNVI
                     FTIKTGPSGEIFLRKRSVLFSEVKRLYMGRHQYSLKGIFFEDIIIEKTDGKIVRIPTW
                     NIITNPLFFEAVERYILPHLNEEAQNNWISQFTEVQRKAYLKEFENHPKL*"
     gene            complement(868191..868649)
                     /gene="yfjE"
                     /locus_tag="BSU_08130"
                     /old_locus_tag="BSU08130"
     S_feature       complement(868650..868742)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_886682_886774_c"
                     /HighExp="BI, BC, S2, Sw, HiOs, HiTm, S5, ferm, S4, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S282"
     CDS             complement(868743..869300)
                     /gene="yfjD"
                     /locus_tag="BSU_08140"
                     /old_locus_tag="BSU08140"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388695.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08140"
                     /db_xref="EnsemblGenomes-Tr:CAB12643"
                     /db_xref="GOA:O31555"
                     /db_xref="InterPro:IPR035324"
                     /db_xref="SubtiList:BG12906"
                     /db_xref="UniProtKB/Swiss-Prot:O31555"
                     /translation="MKNQEIIEVKSKMFLRIWAFVGSAGMGLACLWLFYMGITFQTKY
                     YLLAIPAGFLFTLFCLYLFIIFFPAFTPRGNTIFRIKTGKNGEVFTDKVSVTFTDIKK
                     IEMSRHKFSLKGIFQEDILIQTVDQKTIRIPTWNIIPNPLFFEAVERYILPHLNEEAK
                     SNWIGQFTDIQRSAYLKEFENHPKL*"
     gene            complement(868743..869300)
                     /gene="yfjD"
                     /locus_tag="BSU_08140"
                     /old_locus_tag="BSU08140"
     promotor_-35    869166..869171
                     /Source="Nicolas_upshift_promotors"
                     /id="U622"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1171
                     /SigmaFactorBS="tataaacaaaacaaggtgaacagaaagccagcaggaatggct
                     aatagGTAATAtttcgtttgaaacgTAATACCCATATAAAAGAGccacaaacatgcta
                     a"
                     /listShort="S283"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        869179
                     /Source="Nicolas_upshifts"
                     /id="U622"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1171
                     /SigmaFactorBS="tataaacaaaacaaggtgaacagaaagccagcaggaatggct
                     aatagGTAATAtttcgtttgaaacgTAATACCCATATAAAAGAGccacaaacatgcta
                     a"
                     /listShort="S283"
                     /GFF_Attribute="listLong"
     promotor_-10    869186..869204
                     /Source="Nicolas_upshift_promotors"
                     /id="U622"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1171
                     /SigmaFactorBS="tataaacaaaacaaggtgaacagaaagccagcaggaatggct
                     aatagGTAATAtttcgtttgaaacgTAATACCCATATAAAAGAGccacaaacatgcta
                     a"
                     /listShort="S283"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       869190..869777
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_887222_887809"
                     /HighExp="S4, S5, S6, S3, S8, S7, LoTm, T5.0H, T4.0H, Pyr"
                     /AntisenseName="yfjC"
                     /AntisenseCor="9.3643586039105595E-2"
                     /AntisenseRegPval="-0.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S283"
     CDS             complement(869332..870099)
                     /gene="yfjC"
                     /locus_tag="BSU_08150"
                     /old_locus_tag="BSU08150"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 14563871"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388696.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08150"
                     /db_xref="EnsemblGenomes-Tr:CAB12644"
                     /db_xref="SubtiList:BG12905"
                     /db_xref="UniProtKB/Swiss-Prot:O31556"
                     /translation="MKQFTISIEELLFCFYSEGFFEQGMALKQAYFPEIEDEQLGALF
                     EAACRSLLAKDAAEYRNHQYRLKDEYCPFIHVLNDADYTVKLSKFNGQGAEQNVSCHV
                     SKFGTYSHELLFDEQVHRITKMESSEGLLAKTDEFLHIIDTEDKRESIVTLTSNEFEK
                     LLEGASDNPSYLKEFLEKHDHQEDVTRFANDLALRKGKMDTLMRLAYGKDNTPEVADM
                     AFVLPGAHHTWLVTGITQNEFSILPAHKDVVNQIISK*"
     gene            complement(869332..870099)
                     /gene="yfjC"
                     /locus_tag="BSU_08150"
                     /old_locus_tag="BSU08150"
     CDS             complement(870111..871334)
                     /gene="yfjB"
                     /locus_tag="BSU_08160"
                     /old_locus_tag="BSU08160"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein"
                     /protein_id="NP_388697.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08160"
                     /db_xref="EnsemblGenomes-Tr:CAB12645"
                     /db_xref="SubtiList:BG12904"
                     /db_xref="UniProtKB/Swiss-Prot:O31557"
                     /translation="MSGNIAVDPDKLEQLANDVVTELTDMENKYKDLHVELGQMILQC
                     DPRYSSCFSGVGDAWSSGKALVTKLSDNEIFIRKTGDKFVEQDDILRKLYNAYDKYGT
                     MTSLTALMLTQGKYYGLGLTKFVKQPSGLHTAQHSKLLLDISRAVDSSRYQKAARVLL
                     NPKYLLKKTNRPFSDLVHKKFTKYFPQDTVDFSNSVRSYTKGFLNEAGVRSTLKDVGK
                     TGLRFAKGNAITATLITGATETFGAGVKIAENYAKYQDKPEVLKRENAKAVGNAVNNT
                     IFVAGGATAGAVIGGAIGSFAGPVGTVLLGAAGSYIGGVVGEQIAKYTAGFAEKAALK
                     LKEPIHAVVDTAKKGLESAGKVVKSVNDGIDAANKSIHKGIDSAKKGMEKAKKTADSL
                     IHGATHFLKGKFSFG*"
     gene            complement(870111..871334)
                     /gene="yfjB"
                     /locus_tag="BSU_08160"
                     /old_locus_tag="BSU08160"
     CDS             complement(871340..871654)
                     /gene="yfjA"
                     /locus_tag="BSU_08170"
                     /old_locus_tag="BSU08170"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388698.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08170"
                     /db_xref="EnsemblGenomes-Tr:CAB12646"
                     /db_xref="InterPro:IPR010310"
                     /db_xref="InterPro:IPR036689"
                     /db_xref="SubtiList:BG12903"
                     /db_xref="UniProtKB/Swiss-Prot:O31558"
                     /translation="MDSYKVIELANKYSAAAEEVRSSKMLLESRLSALGDAWQGKARD
                     SFDQDFEETKAAYDQFEQELLETSQELKAAAVKIEERKAEIARMEELERKAREERHKL
                     GR*"
     gene            complement(871340..871654)
                     /gene="yfjA"
                     /locus_tag="BSU_08170"
                     /old_locus_tag="BSU08170"
     promotor_-10    complement(871702..871721)
                     /Source="Nicolas_upshift_promotors"
                     /id="U623"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig="0.992007992007992"
                     /xcortree=2761
                     /SigmaFactorBS="cgcccttccaattcttatgaaaaggttcttttgtacGATTcg
                     gatacatgccgaATTATTTATAATCATTTATAtaaaacatccaattgtgcgtgaattt
                     a"
                     /listShort="yfjA, yfjB, yfjC, yfjD, S282, yfjE, yfjF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(871715)
                     /Source="Nicolas_upshifts"
                     /id="U623"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig="0.992007992007992"
                     /xcortree=2761
                     /SigmaFactorBS="cgcccttccaattcttatgaaaaggttcttttgtacGATTcg
                     gatacatgccgaATTATTTATAATCATTTATAtaaaacatccaattgtgcgtgaattt
                     a"
                     /listShort="yfjA, yfjB, yfjC, yfjD, S282, yfjE, yfjF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(871736..871739)
                     /Source="Nicolas_upshift_promotors"
                     /id="U623"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig="0.992007992007992"
                     /xcortree=2761
                     /SigmaFactorBS="cgcccttccaattcttatgaaaaggttcttttgtacGATTcg
                     gatacatgccgaATTATTTATAATCATTTATAtaaaacatccaattgtgcgtgaattt
                     a"
                     /listShort="yfjA, yfjB, yfjC, yfjD, S282, yfjE, yfjF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    871946..871965
                     /Source="Nicolas_upshift_promotors"
                     /id="U624"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.258741258741259"
                     /psig="0.684315684315684"
                     /xcortree=342
                     /SigmaFactorBS="cactaaagttgatcaaatgacctaagtgcgccaaacgtgtta
                     cgggacgagctatctCATGGTATAAATGGAATTGTaaacgttatcaaggaggtcgtca
                     t"
                     /listShort="malA, malR, malP, malQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        871949
                     /Source="Nicolas_upshifts"
                     /id="U624"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.258741258741259"
                     /psig="0.684315684315684"
                     /xcortree=342
                     /SigmaFactorBS="cactaaagttgatcaaatgacctaagtgcgccaaacgtgtta
                     cgggacgagctatctCATGGTATAAATGGAATTGTaaacgttatcaaggaggtcgtca
                     t"
                     /listShort="malA, malR, malP, malQ"
                     /GFF_Attribute="listLong"
     CDS             871990..873339
                     /gene="malA"
                     /locus_tag="BSU_08180"
                     /old_locus_tag="BSU08180"
                     /EC_number="3.2.1.122"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9765262, 10329789, 11489864, 15341727, 15670594,
                     16707683, 17676871, 20698522"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9765262, 10329789,
                     11489864, 15341727, 15670594, 16707683, 17676871,
                     20698522; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
                     /protein_id="NP_388699.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08180"
                     /db_xref="EnsemblGenomes-Tr:CAB12647"
                     /db_xref="GOA:P54716"
                     /db_xref="InterPro:IPR001088"
                     /db_xref="InterPro:IPR015955"
                     /db_xref="InterPro:IPR019802"
                     /db_xref="InterPro:IPR022616"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:1U8X"
                     /db_xref="SubtiList:BG11839"
                     /db_xref="UniProtKB/Swiss-Prot:P54716"
                     /translation="MKKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK
                     ERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIP
                     LKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRR
                     LRPNSKILNICDMPVGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGNDLM
                     PKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMV
                     KKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIVDLARAIAYN
                     TGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTIPQFQKGLMEQQVSVE
                     KLTVEAWAEKSFQKLWQALILSKTVPNARVARLILEDLVEANKDFWPELDQSPTRIS*
                     "
     gene            871990..873339
                     /gene="malA"
                     /locus_tag="BSU_08180"
                     /old_locus_tag="BSU08180"
     misc_feature    873368..873387
                     /Source="Nicolas_upshift_promotors"
                     /id="U625"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=3083
                     /SigmaFactorBS="cttgatcaaagcccaacccgcatatcataaatgaaattcccc
                     cattttcgaatctgtaATTGTATATAATAGAAAGAAaatggggggatctgatatgcag
                     c"
                     /listShort="malR, malP"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        873370
                     /Source="Nicolas_upshifts"
                     /id="U625"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig=1
                     /xcortree=3083
                     /SigmaFactorBS="cttgatcaaagcccaacccgcatatcataaatgaaattcccc
                     cattttcgaatctgtaATTGTATATAATAGAAAGAAaatggggggatctgatatgcag
                     c"
                     /listShort="malR, malP"
                     /GFF_Attribute="listLong"
     CDS             873404..874168
                     /gene="malR"
                     /locus_tag="BSU_08190"
                     /old_locus_tag="BSU08190"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11489864, 16707683, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11489864, 16707683,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator of the Mal operon"
                     /protein_id="NP_388700.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08190"
                     /db_xref="EnsemblGenomes-Tr:CAB12648"
                     /db_xref="GOA:P54717"
                     /db_xref="InterPro:IPR000281"
                     /db_xref="InterPro:IPR001347"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR035472"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG11847"
                     /db_xref="UniProtKB/Swiss-Prot:P54717"
                     /translation="MQLEELINQHYSKLNDNDFHILKYILNHKHTCYHLGIDALAKAC
                     SVSRSSILRLAQKLGFSGYSEFRVFLKWEDQPEEGESMSFEKLLDDIEANLKFLRTKD
                     MTDMCQLIDAADRIFVYGSGNAQKICARDLQRMFIPRHRYLILIEDTNEFNLMRDDFK
                     VNDLFIIISLSGETPELIPQARMLSAKGIPFISITNLKNNVLAQLTPHNLYATSKPVT
                     LSDRTEIVAFAPFFLVGEALFRAYVDYKEAEKNDNE*"
     gene            873404..874168
                     /gene="malR"
                     /locus_tag="BSU_08190"
                     /old_locus_tag="BSU08190"
     promotor_-10    complement(873548..873562)
                     /Source="Nicolas_upshift_promotors"
                     /id="U626"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.454545454545455"
                     /xcortree=655
                     /SigmaFactorBS="cttcttccggctgatcttcccactttaaaaagacgcgaaatt
                     cactgtaaccgcTGAAACCgagcttttgggcaagCCGTAAAATTGAGGAacgcgatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(873578..873584)
                     /Source="Nicolas_upshift_promotors"
                     /id="U626"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.454545454545455"
                     /xcortree=655
                     /SigmaFactorBS="cttcttccggctgatcttcccactttaaaaagacgcgaaatt
                     cactgtaaccgcTGAAACCgagcttttgggcaagCCGTAAAATTGAGGAacgcgatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(873578)
                     /Source="Nicolas_upshifts"
                     /id="U626"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="Sig-"
                     /pcomp="0.454545454545455"
                     /psig="0.454545454545455"
                     /xcortree=655
                     /SigmaFactorBS="cttcttccggctgatcttcccactttaaaaagacgcgaaatt
                     cactgtaaccgcTGAAACCgagcttttgggcaagCCGTAAAATTGAGGAacgcgatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             874183..875766
                     /gene="malP"
                     /locus_tag="BSU_08200"
                     /old_locus_tag="BSU08200"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16707683, 16850406, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16707683,
                     16850406, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     maltose-specificenzyme IICB component"
                     /protein_id="NP_388701.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08200"
                     /db_xref="EnsemblGenomes-Tr:CAB12649"
                     /db_xref="GOA:P54715"
                     /db_xref="InterPro:IPR001996"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR004719"
                     /db_xref="InterPro:IPR010975"
                     /db_xref="InterPro:IPR013013"
                     /db_xref="InterPro:IPR018113"
                     /db_xref="InterPro:IPR036878"
                     /db_xref="SubtiList:BG11848"
                     /db_xref="UniProtKB/Swiss-Prot:P54715"
                     /translation="MMQKIQRFGSAMFVPVLLFAFAGIIVGISTLFKNKTLMGPLADP
                     DGFWYQCWYIIEQGGWTVFNQMPLLFAIGIPVALAKKAQARACLEALTVYLTFNYFVS
                     AILTVWGGAFGVDMNQEVGGTSGLTMIAGIKTLDTNIIGAIFISSIVVFLHNRYFDKK
                     LPDFLGIFQGSTYIVMISFFIMIPIALAVSYIWPMVQSGIGSLQSFLVASGAVGVWIY
                     TFLERILIPTGLHHFIYTPFIYGPAVAEGGIVTYWAQHLGEYSQSAKPLKELFPQGGF
                     ALHGNSKIFGIPGIALAFYVTAKKEKKKLVAGLLIPVTLTAIVAGITEPIEFTFLFIS
                     PFLFAVHAVLAATMSTVMYMAGVVGNMGGGLIEAVTLNWIPLFGSHGMTYVYQILIGL
                     SFTAIYFFVFRFLILKFNIATPGREKDEQQETKLYSKKEYRERKNKDETASAAETADD
                     TAFLYIEALGGKDNITEVTNCATRLRVSVKDETKVEPDSVFRALGAHGVVRNGKAFQV
                     IIGLSVPQMRERVEKILNQ*"
     gene            874183..875766
                     /gene="malP"
                     /locus_tag="BSU_08200"
                     /old_locus_tag="BSU08200"
     downshifts      875746
                     /Source="Nicolas_upshifts"
                     /id="D409"
                     /incds=0
                     /nref=23
                     /ntot=46
                     /MaxReadThrough="3.26652"
                     /MaxDrop="4.69656"
                     /score="8.65399085"
                     /energy="-10.9"
                     /TU="U624"
                     /idTUdmin="U625"
                     /TUdmin=836
                     /isTUend="FALSE"
     promotor_-35    875795..875802
                     /Source="Nicolas_upshift_promotors"
                     /id="U627"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2032
                     /SigmaFactorBS="aaagactgccctccttttcgggagggttttCGTTTGCCgtca
                     aaaagaccgcCATAGTAAAGTAAAGAAAGAgacaatcgagtaaaaaggggtttggagg
                     c"
                     /listShort="malQ, yfiC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    875817..875836
                     /Source="Nicolas_upshift_promotors"
                     /id="U627"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2032
                     /SigmaFactorBS="aaagactgccctccttttcgggagggttttCGTTTGCCgtca
                     aaaagaccgcCATAGTAAAGTAAAGAAAGAgacaatcgagtaaaaaggggtttggagg
                     c"
                     /listShort="malQ, yfiC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        875825
                     /Source="Nicolas_upshifts"
                     /id="U627"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2032
                     /SigmaFactorBS="aaagactgccctccttttcgggagggttttCGTTTGCCgtca
                     aaaagaccgcCATAGTAAAGTAAAGAAAGAgacaatcgagtaaaaaggggtttggagg
                     c"
                     /listShort="malQ, yfiC"
                     /GFF_Attribute="listLong"
     CDS             875872..877593
                     /gene="yfiB"
                     /locus_tag="BSU_08210"
                     /old_locus_tag="BSU08210"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16707683; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative xenobiotic ABC transporter subunit
                     (ATP-binding protein)"
                     /protein_id="NP_388702.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08210"
                     /db_xref="EnsemblGenomes-Tr:CAB12650"
                     /db_xref="GOA:P54718"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG11849"
                     /db_xref="UniProtKB/Swiss-Prot:P54718"
                     /translation="MQKALSFLKPYSLLAGIALILMLTELAVELMQPLLIAKIIDDGI
                     LKQDLRHVWIWGTVMIGLTVLSFAAGMLNSFYAAHVSQSFSYDTRKGLFQKIQSFSYS
                     TFGQFSSSSYITRLTNDVTQVQNMIFMSLRFMLRAPLMIAGGIVLSLAVNVKLGFFLL
                     VTIPILILFLLWVLRKGGALFRSVQKRLDQVNTIMQENLIAIKLIKALLRGSHEVKRF
                     IKANTRLMEKTVSAFQLVEFTMPVLMLLMNLCILLILWAGSYSITSGSTQVGDVVAII
                     NYATRITGALSMFPFLIMIFTRAKASGDRIGEVLETEGDEREEGTISDRLSGRIEFQH
                     VSFRYPEMDREALRNVSFSAKPRETIAILGATGSGKSTLFQLIPRLYQPDSGRIYIDE
                     KPVQDIPAEGLRRQIGYVPQEVLLFSGTIKENIAWGKENASLDEIMDAAKLAQIHETI
                     LKLPNGYDTVLGQRGVNLSGGQKQRISIARALIRKPAILLLDDSTSALDLQTEAKLLE
                     AISTYHCTTLIITQKITTAMKADQILLLEDGELIEKGTHSELLSESQLYKRIYESQFG
                     REGSESC*"
     gene            875872..877593
                     /gene="yfiB"
                     /locus_tag="BSU_08210"
                     /old_locus_tag="BSU08210"
     CDS             877587..879401
                     /gene="yfiC"
                     /locus_tag="BSU_08220"
                     /old_locus_tag="BSU08220"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388703.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08220"
                     /db_xref="EnsemblGenomes-Tr:CAB12651"
                     /db_xref="GOA:P54719"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG11850"
                     /db_xref="UniProtKB/Swiss-Prot:P54719"
                     /translation="MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAE
                     RKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVGKTVSGLIPVLLLLLAIYIIQSL
                     SLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
                     LNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQ
                     QKNLGDLNGYIEESVSGAKVIKAYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKV
                     MNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPLNDLANQFNTMLSAI
                     AGAERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAG
                     QSIAFVGPTGAGKTTVTNLLARFYEPNDGKILIDGTDIKTLTRASLRKNMGFVLQDSF
                     LFQGTIRENIRYGRLDASDQEVEAAAKTANAHSFIERLPKGYDTVLTQNGSGISQGQK
                     QLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHRLNTIQR
                     ADQIVVLKNGEMIEKGSHDELIRQKGFYSDLYESQFEK*"
     gene            877587..879401
                     /gene="yfiC"
                     /locus_tag="BSU_08220"
                     /old_locus_tag="BSU08220"
     downshifts      879376
                     /Source="Nicolas_upshifts"
                     /id="D410"
                     /incds=0
                     /nref=103
                     /ntot=190
                     /MaxReadThrough="2.4559"
                     /MaxDrop="5.61906"
                     /score="24.4395842"
                     /energy="-11"
                     /TU="NA"
                     /idTUdmin="U627"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    879483..879490
                     /Source="Nicolas_upshift_promotors"
                     /id="U628"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.75024975024975"
                     /psig=1
                     /xcortree=1845
                     /SigmaFactorBS="cttttatttcattttcgtaaaatgtaacaaaattaCTTGACG
                     TaaacaagttatgtATATATACTAGCTTACATTAagtaagtgataacatttatcaagg
                     a"
                     /listShort="catD, catE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    879504..879523
                     /Source="Nicolas_upshift_promotors"
                     /id="U628"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.75024975024975"
                     /psig=1
                     /xcortree=1845
                     /SigmaFactorBS="cttttatttcattttcgtaaaatgtaacaaaattaCTTGACG
                     TaaacaagttatgtATATATACTAGCTTACATTAagtaagtgataacatttatcaagg
                     a"
                     /listShort="catD, catE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        879508
                     /Source="Nicolas_upshifts"
                     /id="U628"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.75024975024975"
                     /psig=1
                     /xcortree=1845
                     /SigmaFactorBS="cttttatttcattttcgtaaaatgtaacaaaattaCTTGACG
                     TaaacaagttatgtATATATACTAGCTTACATTAagtaagtgataacatttatcaagg
                     a"
                     /listShort="catD, catE"
                     /GFF_Attribute="listLong"
     CDS             879556..879960
                     /gene="catD"
                     /locus_tag="BSU_08230"
                     /old_locus_tag="BSU08230"
                     /EC_number="1.13.11.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16872404, 16850406, 17407181, 20639328"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16872404,
                     16850406, 17407181, 20639328; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="catechol-2,3-dioxygenase membrane subunit"
                     /protein_id="NP_388704.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08230"
                     /db_xref="EnsemblGenomes-Tr:CAB12652"
                     /db_xref="GOA:P54720"
                     /db_xref="InterPro:IPR032808"
                     /db_xref="SubtiList:BG11851"
                     /db_xref="UniProtKB/Swiss-Prot:P54720"
                     /translation="MNKSFEIGTLLLRVITGIIFFVHGLSKFQGMEGTIQFFGSIGLP
                     SFMAYVIAAIELIGGVLVFFGLATRIVGVLFALTLIGAIITVKLKAPFMGNAEFDYLL
                     LLTSIHLALTGSRFLALDPFVFKGKKNGNVSA*"
     gene            879556..879960
                     /gene="catD"
                     /locus_tag="BSU_08230"
                     /old_locus_tag="BSU08230"
     CDS             879978..880835
                     /gene="catE"
                     /locus_tag="BSU_08240"
                     /old_locus_tag="BSU08240"
                     /EC_number="1.13.11.2"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:17407181, 16872404"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17407181, 16872404;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="catechol-2,3-dioxygenase subunit"
                     /protein_id="NP_388705.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08240"
                     /db_xref="EnsemblGenomes-Tr:CAB12653"
                     /db_xref="GOA:P54721"
                     /db_xref="InterPro:IPR000486"
                     /db_xref="InterPro:IPR004360"
                     /db_xref="InterPro:IPR029068"
                     /db_xref="SubtiList:BG11852"
                     /db_xref="UniProtKB/Swiss-Prot:P54721"
                     /translation="MTSIHEDTHIGYAKLTIRSLERSLQFYCNVIGFQVLKKTDRQAE
                     LTADGKRVLLILEENPSAVVLPERSVTGLYHFAILLPDRKELGIALARLIEHGIAIGH
                     GDHAVSEALYLSDPDGNGIEMYADRPRSTWQRDREGNYVMTTTAVDIEGLLEEAGDER
                     KTSLPNDTIIGHIHLHVSDLKEAKAFYTDVLGFDIVGNYAGMSALFVSAGGYHHHIGL
                     NIWAGRNAPPKPTNASGLDYYTVVLPHQEELDLVANRVKHAGYSIEETENSFRVKDPV
                     SGAYITFVI*"
     gene            879978..880835
                     /gene="catE"
                     /locus_tag="BSU_08240"
                     /old_locus_tag="BSU08240"
     downshifts      880822
                     /Source="Nicolas_upshifts"
                     /id="D411"
                     /incds=0
                     /nref=4
                     /ntot=21
                     /MaxReadThrough="0.66359"
                     /MaxDrop="3.74886"
                     /score="50.8573531"
                     /energy="-19.7"
                     /TU="NA"
                     /idTUdmin="U628"
                     /TUdmin=16
                     /isTUend="TRUE"
     CDS             880929..881873
                     /gene="yfiF"
                     /locus_tag="BSU_08250"
                     /old_locus_tag="BSU08250"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10704478; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family; cupin family)"
                     /protein_id="NP_388706.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08250"
                     /db_xref="EnsemblGenomes-Tr:CAB12654"
                     /db_xref="GOA:P54722"
                     /db_xref="InterPro:IPR003313"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="SubtiList:BG11853"
                     /db_xref="UniProtKB/Swiss-Prot:P54722"
                     /translation="MELNHLVTGKIALNQYVHRLEQKDVSFYVHYWGAMTNHYNTLLH
                     KHSFYEICYVVRGEGYYLEGDRTYPLREQTIFLSKPEHLHQIKSETGLFLFYVAFELS
                     EDQSSAEWIKVMEEVKQSPFITMQLKDGEPPGLLWKTLMLQAAQPVNAFDKEILSHLS
                     HALILSLIQTFLPYAQRPKQKQPIHTSSALLTEVKLHIKDNLSQPLKLTDVASHFHIS
                     GRHLSRLFAAELGVSYSEFVQNEKINKAAELLKSTNLSIKEIAEEIGFSVHYFTRVFS
                     AKIGSSPGLFRSLYKDSKMTAFQINKPFQKIEQAKPHE*"
     gene            880929..881873
                     /gene="yfiF"
                     /locus_tag="BSU_08250"
                     /old_locus_tag="BSU08250"
     downshifts      complement(881740)
                     /Source="Nicolas_upshifts"
                     /id="D412"
                     /incds=1
                     /nref=1
                     /ntot=2
                     /MaxReadThrough="-0.20031"
                     /MaxDrop="3.51831"
                     /score="-4.19869956"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U632"
                     /TUdmin=9372
                     /isTUend="FALSE"
     promotor_no_box complement(881788..881888)
                     /Source="Nicolas_upshift_promotors"
                     /id="U629"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.533466533466533"
                     /psig="0.034965034965035"
                     /xcortree=1481
                     /SigmaFactorBS="tcatttcaggacatcttattcgtgcggcttggcctgttcgat
                     tttttgaaaaggtttattgatttgaaatgcggtcatttttgagtctttataaagggag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(881828)
                     /Source="Nicolas_upshifts"
                     /id="U629"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.533466533466533"
                     /psig="0.034965034965035"
                     /xcortree=1481
                     /SigmaFactorBS="tcatttcaggacatcttattcgtgcggcttggcctgttcgat
                     tttttgaaaaggtttattgatttgaaatgcggtcatttttgagtctttataaagggag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             882048..883496
                     /gene="yfiG"
                     /locus_tag="BSU_08260"
                     /old_locus_tag="BSU08260"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sugar/proton transporter"
                     /protein_id="NP_388707.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08260"
                     /db_xref="EnsemblGenomes-Tr:CAB12655"
                     /db_xref="GOA:P54723"
                     /db_xref="InterPro:IPR003663"
                     /db_xref="InterPro:IPR005828"
                     /db_xref="InterPro:IPR005829"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG11854"
                     /db_xref="UniProtKB/Swiss-Prot:P54723"
                     /translation="MSTKKKEAVIGKESLAHKGLLRTITLVSTFGGLLFGYDTGVING
                     ALPFMATAGQLNLTPVTEGLVASSLLLGAAFGAMFGGRLSDRHGRRKTILYLALLFIA
                     ATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAEISPAERRGRIVTQNELMIVI
                     GQLLAYTFNAIIGSTMGESANVWRYMLVIATLPAVVLWFGMLIVPESPRWLAAKGRMG
                     DALRVLRQIREDSQAQQEIKEIKHAIEGTAKKAGFHDFQEPWIRRILFIGIGIAIVQQ
                     ITGVNSIMYYGTEILREAGFQTEAALIGNIANGVISVIAVIFGIWLLGKVRRRPMLII
                     GQIGTMTALLLIGILSIVLEGTPALPYVVLSLTILFLAFQQTAISTVTWLMLSEIFPM
                     HVRGLGMGISTFCLWTANFLIGFTFPILLNHIGMSATFFIFVAMNILAILFVKKYVPE
                     TKGRSLEQLEHSFRQYGRRADQEIQNQTTHLS*"
     gene            882048..883496
                     /gene="yfiG"
                     /locus_tag="BSU_08260"
                     /old_locus_tag="BSU08260"
     CDS             883523..884464
                     /gene="yfiH"
                     /locus_tag="BSU_08270"
                     /old_locus_tag="BSU08270"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sugar-phosphate epimerase/isomerase"
                     /protein_id="NP_388708.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08270"
                     /db_xref="EnsemblGenomes-Tr:CAB12656"
                     /db_xref="InterPro:IPR011418"
                     /db_xref="InterPro:IPR013022"
                     /db_xref="InterPro:IPR036237"
                     /db_xref="SubtiList:BG11855"
                     /db_xref="UniProtKB/Swiss-Prot:P54724"
                     /translation="MKLSYVTDSLGHLPFEDMLNFAAKLGIDTLEMTTGGWSPAPHLN
                     LDELLQSSEKRKEFSQALEKRNMTLCALNCSGNPLDPGELGKSHRDITDKTMELAGLL
                     GVKKVIMMSGLPAGGPDDKVPNWITYTVSWPPVLKDILNYQWEDVAIPYWKKLVKKAE
                     ACGVGKIALENFSSQLVYNPETLFRLRNAVGPMVGLNLDPSHLLWMGADPIIAARELG
                     SAIHHVHGKDVRIERYLSAVNGLLETKEVTDPANRAWNYVAVGCGQDLQWWKEFFSVV
                     KMMGYEGEVSLEMEDLTMSPEAGIRTSVEALKQTISQ*"
     gene            883523..884464
                     /gene="yfiH"
                     /locus_tag="BSU_08270"
                     /old_locus_tag="BSU08270"
     CDS             884474..885655
                     /gene="yfiI"
                     /locus_tag="BSU_08280"
                     /old_locus_tag="BSU08280"
                     /EC_number="1.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26438878; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388709.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08280"
                     /db_xref="EnsemblGenomes-Tr:CAB12657"
                     /db_xref="GOA:P94437"
                     /db_xref="InterPro:IPR000683"
                     /db_xref="InterPro:IPR004104"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12214"
                     /db_xref="UniProtKB/Swiss-Prot:P94437"
                     /translation="MMLNGERIISKPLRWAMVGGGRLSQVGYKHRIGALRDNTAFQLT
                     AGAFDIDAERGKDFGVNLGVDAERCYPNYQTMFAEEAKRQDGIEVVSIATPNGTHYEI
                     CKAALEAGVHVICEKPLFFTSAEGQEIKALAEKKGKIVGVTYGFSGNQMLLQMRAMIE
                     QGMIGDIRVVDLQYTHGFCATDEGEKISAAQKWRVDPAIAGPSFVLGDLSTHTYYMSQ
                     LIMPKMKIKELLCDRQSFVGSRAPLEDNAHVLMHYENGAVGTMWTSSINAGCMDGHRI
                     RIVGSKASIEWWDSKPNELTYEVQGEPGQTLVRGMPYLDDVCNADERLGALHSEGLSE
                     AWANIYLKFAIAIDAKNREDEEILNNLVYPDIDAGIEGIRWIENCVRSANQGSVWVEF
                     K*"
     gene            884474..885655
                     /gene="yfiI"
                     /locus_tag="BSU_08280"
                     /old_locus_tag="BSU08280"
     downshifts      885645
                     /Source="Nicolas_upshifts"
                     /id="D413"
                     /incds=0
                     /nref=40
                     /ntot=113
                     /MaxReadThrough="0.88387"
                     /MaxDrop="5.80704"
                     /score="14.819468"
                     /energy="-13"
                     /TU="NA"
                     /idTUdmin="U630"
                     /TUdmin="-2003"
                     /isTUend="FALSE"
     promotor_-35    885715..885721
                     /Source="Nicolas_upshift_promotors"
                     /id="U630"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.517482517482518"
                     /psig="0.918081918081918"
                     /xcortree=2137
                     /SigmaFactorBS="cggtttttattttccagaaacTCCTGTCaaaaatgccctgag
                     GCAGGTATGATAAGAAGGGAattgggtatcgggagtgatgagcgtgaaagctcttttt
                     t"
                     /listShort="yfiJ, yfiK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    885736..885755
                     /Source="Nicolas_upshift_promotors"
                     /id="U630"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.517482517482518"
                     /psig="0.918081918081918"
                     /xcortree=2137
                     /SigmaFactorBS="cggtttttattttccagaaacTCCTGTCaaaaatgccctgag
                     GCAGGTATGATAAGAAGGGAattgggtatcgggagtgatgagcgtgaaagctcttttt
                     t"
                     /listShort="yfiJ, yfiK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        885754
                     /Source="Nicolas_upshifts"
                     /id="U630"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.517482517482518"
                     /psig="0.918081918081918"
                     /xcortree=2137
                     /SigmaFactorBS="cggtttttattttccagaaacTCCTGTCaaaaatgccctgag
                     GCAGGTATGATAAGAAGGGAattgggtatcgggagtgatgagcgtgaaagctcttttt
                     t"
                     /listShort="yfiJ, yfiK"
                     /GFF_Attribute="listLong"
     CDS             885779..886981
                     /gene="linJ"
                     /locus_tag="BSU_08290"
                     /old_locus_tag="BSU08290"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 12618459, 28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 12618459,
                     28461449; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [LinK]
                     (linearmycin resistance, biofilm formation)"
                     /protein_id="NP_388710.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08290"
                     /db_xref="EnsemblGenomes-Tr:CAB12658"
                     /db_xref="GOA:P94438"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR011712"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG12215"
                     /db_xref="UniProtKB/Swiss-Prot:P94438"
                     /translation="MKALFFTRMFTLMVSCLMYLSIVKEDNWFGYVFIAAGAAMYAAN
                     HVLLTKETNAIWFCLIDIAIGFSFGFIFPGTGLFIIMLCPVAVAFFLRGFPKRTAWSV
                     LCLSSILFLTVLIRTYAMFGNEFVIDHLTSMTFVVFCGVVGKLIRKLLDAQDTAKQQF
                     QELTESHLALSAAHQELHLYAKQVEELTAIYERNRMAREIHDTVGHKMTALLVQLQLL
                     REWQKRDSQKADETVGVCETLAREALDDVRLSVRTLQTENDPSLIESLKQLTEDFCKN
                     AGVTTEFAVSGDPAIIPLSLHPTLIRTVQEALTNAKRHGGAAACSIQLACTTDSISLV
                     IKDDGKGNPEAALGFGLLNMKKRAAEHGGMIRFESERDQGFTVNAEFSLANKKWSFGP
                     VQQKESLS*"
     gene            885779..886981
                     /gene="linJ"
                     /locus_tag="BSU_08290"
                     /old_locus_tag="BSU08290"
     CDS             886978..887640
                     /gene="linK"
                     /locus_tag="BSU_08300"
                     /old_locus_tag="BSU08300"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 12618459, 28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 12618459,
                     28461449; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [LinJ]
                     (linearmycin resistance, biofilm formation)"
                     /protein_id="NP_388711.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08300"
                     /db_xref="EnsemblGenomes-Tr:CAB12659"
                     /db_xref="GOA:P94439"
                     /db_xref="InterPro:IPR000792"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12216"
                     /db_xref="UniProtKB/Swiss-Prot:P94439"
                     /translation="MIKIIITDDQDIVREGLASLLQLREELDVIATARNGQEAFEKAK
                     ELEPDIVLMDIRMPVSNGVEGTKLITSSLPSVKVLMLTTFKDSALIAEALEEGASGYL
                     LKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGINEIEKPNELLDLTE
                     REIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYGVS
                     VF*"
     gene            886978..887640
                     /gene="linK"
                     /locus_tag="BSU_08300"
                     /old_locus_tag="BSU08300"
     downshifts      887648
                     /Source="Nicolas_upshifts"
                     /id="D414"
                     /incds=0
                     /nref=114
                     /ntot=229
                     /MaxReadThrough="-0.0105699999999995"
                     /MaxDrop="4.23231"
                     /score="20.4785449"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U630"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             887784..888719
                     /gene="bifL"
                     /locus_tag="BSU_08310"
                     /old_locus_tag="BSU08310"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 28461449; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (ATP-binding protein) biofilm
                     formation"
                     /protein_id="NP_388712.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08310"
                     /db_xref="EnsemblGenomes-Tr:CAB12660"
                     /db_xref="GOA:P94440"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12217"
                     /db_xref="UniProtKB/Swiss-Prot:P94440"
                     /translation="MLQAENIKKAYGKKTIVKGISFSLKKGESFGLLGPNGAGKSTTI
                     SMISGLVPHDSGNITVGGYVIGKETAKAKQKIGIVPQEIALYPTLTAHENLMFWGKMY
                     GLTHGEAKKRAAEVLEYVGLTERAKDKIETFSGGMKRRINIGAALMHKPELLIMDEPT
                     VGIDPQSRNHILETVKQLNETGMTVIYTSHYMEEVEFLCDRIGIIDQGEMIAIGTKTD
                     LCSRLGGDTIIQLTVSGINEAFLVAIRSLAHVNDVTVHELELKIDISAAHHEKVVTSL
                     LAEATAHHINLLSLQVQEPNLERLFLNLTGRTLRD*"
     gene            887784..888719
                     /gene="bifL"
                     /locus_tag="BSU_08310"
                     /old_locus_tag="BSU08310"
     CDS             888732..889922
                     /gene="bifM"
                     /locus_tag="BSU_08320"
                     /old_locus_tag="BSU08320"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     28461449; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease) biofilm formation"
                     /protein_id="NP_388713.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08320"
                     /db_xref="EnsemblGenomes-Tr:CAB12661"
                     /db_xref="GOA:P94441"
                     /db_xref="InterPro:IPR000412"
                     /db_xref="SubtiList:BG12218"
                     /db_xref="UniProtKB/Swiss-Prot:P94441"
                     /translation="MKKSIWIAWKDVKIRITDRKGFMMLILMPLILTCILGAALGSVV
                     DGGSRIDDIKVGYIQSDQSDTANMFTKDVLKKMKSIKVTKVGSKDKMKKLIDEKKIDV
                     GIVIPNHWEAGKTSAVVNAAPDQTLKSSIIETAASSFIEQYKAVKEAASGSMDYISKT
                     EAVKQGKLDPAQFAEKLAKTLEKETGDKLTIAEKSVGSKAVTSFQYYSAAMLCMFMLF
                     HITVGAKSFLQEKDTETLARMLMTPAQKSVILFGKWLGTYLFAIIQFFIFLIVTINVF
                     GVDWGGNLLLVSVLGLSYAAAVSGISMLLASCISDMKTADAIGGFGIQLLAVLGGSML
                     PLYQFPDVLQSVSKAVPNRWALDGFLSLMEGGGWADLQKPVLLFAAIGFCSLVIGIRR
                     LHTR*"
     gene            888732..889922
                     /gene="bifM"
                     /locus_tag="BSU_08320"
                     /old_locus_tag="BSU08320"
     CDS             889936..891093
                     /gene="bifN"
                     /locus_tag="BSU_08330"
                     /old_locus_tag="BSU08330"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 28461449"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     28461449; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease) biofilm formation"
                     /protein_id="NP_388714.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08330"
                     /db_xref="EnsemblGenomes-Tr:CAB12662"
                     /db_xref="GOA:P94442"
                     /db_xref="InterPro:IPR000412"
                     /db_xref="SubtiList:BG12219"
                     /db_xref="UniProtKB/Swiss-Prot:P94442"
                     /translation="MKKILAICGIELSLIFKKPQNYLIMFAAPLLLTFVFGSMLSGND
                     DKVRLAIVDQDDTILSQHYIRQLKAHDDMYVFENMSESKASEKLKQKKIAGIIVISRS
                     FQTQLEKGKHPELIFRHGPELSEAPMVKQYAESALATLNIQVTAAKTASQTAGENWKA
                     AYKTVFAKKHEDIVPAVTRQTLSDKKEGAEASDTASRAAGFSILFVMLTMMGAAGTIL
                     EARKNGVWSRLLTASVSRAEIGAGYVLSFFVIGWIQFGILLLSTHWLFGINWGNPAAV
                     IVLVSLFLLTVVGIGLMIAANVRTPEQQLAFGNLFVIATCMVSGMYWPIDIEPKFMQS
                     IAEFLPQKWAMSGLTEIIANGARVTDILGICGILLAFAAITFAAGLKALRA*"
     gene            889936..891093
                     /gene="bifN"
                     /locus_tag="BSU_08330"
                     /old_locus_tag="BSU08330"
     promotor_-35    890047..890052
                     /Source="Nicolas_upshift_promotors"
                     /id="U631"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.693306693306693"
                     /psig="0.693306693306693"
                     /xcortree=1182
                     /SigmaFactorBS="atgtttgctgccccgcttttgcttacctttgtatttgggAGT
                     ATGctcagcggcaatgaTGATAAGGTGCGGCTTGCAatcgttgatcaggacgatacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    890067..890085
                     /Source="Nicolas_upshift_promotors"
                     /id="U631"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.693306693306693"
                     /psig="0.693306693306693"
                     /xcortree=1182
                     /SigmaFactorBS="atgtttgctgccccgcttttgcttacctttgtatttgggAGT
                     ATGctcagcggcaatgaTGATAAGGTGCGGCTTGCAatcgttgatcaggacgatacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        890068
                     /Source="Nicolas_upshifts"
                     /id="U631"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.693306693306693"
                     /psig="0.693306693306693"
                     /xcortree=1182
                     /SigmaFactorBS="atgtttgctgccccgcttttgcttacctttgtatttgggAGT
                     ATGctcagcggcaatgaTGATAAGGTGCGGCTTGCAatcgttgatcaggacgatacga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     S_feature       complement(891091..891165)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_909123_909197_c"
                     /HighExp="LoTm, Sw, C90, HiOs, BC, MG 45, UNK1, Fru, S1,
                     BI"
                     /AntisenseName="yfiN"
                     /AntisenseCor="-6.3486715356968801E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S284"
     downshifts      complement(891134)
                     /Source="Nicolas_upshifts"
                     /id="D415"
                     /incds=0
                     /nref=90
                     /ntot=257
                     /MaxReadThrough="1.41433"
                     /MaxDrop="6.01369"
                     /score="13.7314837"
                     /energy="-11.5"
                     /TU="U632"
                     /idTUdmin="U632"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     CDS             complement(891166..891714)
                     /gene="padR"
                     /locus_tag="BSU_08340"
                     /old_locus_tag="BSU08340"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11073918, 17295427, 18326577, 21685295, 23189126,
                     27716049, 28027933"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11073918, 17295427,
                     18326577, 21685295, 23189126, 27716049, 28027933; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of phenolic acid
                     decarboxylase"
                     /protein_id="NP_388715.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08340"
                     /db_xref="EnsemblGenomes-Tr:CAB12663"
                     /db_xref="GOA:P94443"
                     /db_xref="InterPro:IPR005149"
                     /db_xref="InterPro:IPR018309"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12220"
                     /db_xref="UniProtKB/Swiss-Prot:P94443"
                     /translation="MRVLKYAILGLLRKGELSGYDITSYFKEELGQFWSAKHSQIYPE
                     LKKLTDEGFITFRTTIQGTKLEKKMYTLTDSGKQELHDWLIRHQPIPETVKDEFMLKA
                     YFISCLSRQEASDLFKDQLQKRQAKLSDLQGSYEKLMASAEPMSFSSPDFGHYLVLTK
                     ALEREKNYVSWLESILAMIDKD*"
     gene            complement(891166..891714)
                     /gene="padR"
                     /locus_tag="BSU_08340"
                     /old_locus_tag="BSU08340"
     S_feature       complement(891715..891794)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_909747_909826_c"
                     /HighExp="LoTm, Cold, G180, GM-0.2, Oxctl, T5.0H, GM 25,
                     T3.30H, MG 60, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S285"
     promotor_-10    complement(891783..891802)
                     /Source="Nicolas_upshift_promotors"
                     /id="U632"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.405594405594406"
                     /psig="0.997002997002997"
                     /xcortree=2251
                     /SigmaFactorBS="acaaaccttttatcttcatttccaaagagcccgGTTGTGttc
                     ccttcctcccTTTTCTATAATAAGGGGAATaggcagttagaatcacagttgagcaccg
                     g"
                     /listShort="S285, padR, S284"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(891794)
                     /Source="Nicolas_upshifts"
                     /id="U632"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.405594405594406"
                     /psig="0.997002997002997"
                     /xcortree=2251
                     /SigmaFactorBS="acaaaccttttatcttcatttccaaagagcccgGTTGTGttc
                     ccttcctcccTTTTCTATAATAAGGGGAATaggcagttagaatcacagttgagcaccg
                     g"
                     /listShort="S285, padR, S284"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(891816..891821)
                     /Source="Nicolas_upshift_promotors"
                     /id="U632"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.405594405594406"
                     /psig="0.997002997002997"
                     /xcortree=2251
                     /SigmaFactorBS="acaaaccttttatcttcatttccaaagagcccgGTTGTGttc
                     ccttcctcccTTTTCTATAATAAGGGGAATaggcagttagaatcacagttgagcaccg
                     g"
                     /listShort="S285, padR, S284"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    891917..891920
                     /Source="Nicolas_upshift_promotors"
                     /id="U633"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=2321
                     /SigmaFactorBS="tataaaagagatttaaatttaattttcagaaaaaATAGtaac
                     gatattgatttTTTATATATAATAGGAAATTggtggtatgaaaattttttgggggaat
                     a"
                     /listShort="estB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    891936..891955
                     /Source="Nicolas_upshift_promotors"
                     /id="U633"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=2321
                     /SigmaFactorBS="tataaaagagatttaaatttaattttcagaaaaaATAGtaac
                     gatattgatttTTTATATATAATAGGAAATTggtggtatgaaaattttttgggggaat
                     a"
                     /listShort="estB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        891943
                     /Source="Nicolas_upshifts"
                     /id="U633"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=2321
                     /SigmaFactorBS="tataaaagagatttaaatttaattttcagaaaaaATAGtaac
                     gatattgatttTTTATATATAATAGGAAATTggtggtatgaaaattttttgggggaat
                     a"
                     /listShort="estB"
                     /GFF_Attribute="listLong"
     CDS             891987..892619
                     /gene="estB"
                     /locus_tag="BSU_08350"
                     /old_locus_tag="BSU08350"
                     /EC_number="3.1.1.3"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11029590, 10913700, 21574267"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11029590, 10913700,
                     21574267; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="secreted esterase / acylglycerol lipase"
                     /protein_id="NP_388716.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08350"
                     /db_xref="EnsemblGenomes-Tr:CAB12664"
                     /db_xref="GOA:Q79F14"
                     /db_xref="InterPro:IPR002918"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG11951"
                     /db_xref="UniProtKB/Swiss-Prot:Q79F14"
                     /translation="MKKVLMAFIICLSLILSVLAAPPSGAKAESVHNPVVLVHGISGA
                     SYNFFAIKNYLISQGWQSNKLYAIDFYDKTGNNLNNGPQLASYVDRVLKETGAKKVDI
                     VAHSMGGANTLYYIKYLGGGNKIQNVVTLGGANGLVSSTALPGTDPNQKILYTSIYSL
                     NDQIVINSLSRLQGARNIQLYGIGHIGLLSNSQVNGYIKEGLNGGGLNTN*"
     gene            891987..892619
                     /gene="estB"
                     /locus_tag="BSU_08350"
                     /old_locus_tag="BSU08350"
     downshifts      892598
                     /Source="Nicolas_upshifts"
                     /id="D416"
                     /incds=0
                     /nref=7
                     /ntot=100
                     /MaxReadThrough="0.87881"
                     /MaxDrop="2.6151"
                     /score="0.223019698"
                     /energy="-8.5"
                     /TU="NA"
                     /idTUdmin="U633"
                     /TUdmin=88
                     /isTUend="FALSE"
     promotor_-35    892734..892739
                     /Source="Nicolas_upshift_promotors"
                     /id="U634"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.984015984015984"
                     /xcortree=3160
                     /SigmaFactorBS="tcatgcatacgtcaatttatgacatcaggcaCTTTTTcaaat
                     agagcggaCATGTTAAGGTACAACCATCgatttctatcaatttgaaataaaaggagcg
                     c"
                     /listShort="yfiQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    892753..892772
                     /Source="Nicolas_upshift_promotors"
                     /id="U634"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.984015984015984"
                     /xcortree=3160
                     /SigmaFactorBS="tcatgcatacgtcaatttatgacatcaggcaCTTTTTcaaat
                     agagcggaCATGTTAAGGTACAACCATCgatttctatcaatttgaaataaaaggagcg
                     c"
                     /listShort="yfiQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        892763
                     /Source="Nicolas_upshifts"
                     /id="U634"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.984015984015984"
                     /xcortree=3160
                     /SigmaFactorBS="tcatgcatacgtcaatttatgacatcaggcaCTTTTTcaaat
                     agagcggaCATGTTAAGGTACAACCATCgatttctatcaatttgaaataaaaggagcg
                     c"
                     /listShort="yfiQ"
                     /GFF_Attribute="listLong"
     CDS             892808..893896
                     /gene="icaC"
                     /locus_tag="BSU_08360"
                     /old_locus_tag="BSU08360"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16850406,
                     24776724, 25935415, 27303652; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-glucosamine metabolite exporter
                     componentinvolved in biofilm formation"
                     /protein_id="NP_388717.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08360"
                     /db_xref="EnsemblGenomes-Tr:CAB12665"
                     /db_xref="GOA:O31559"
                     /db_xref="InterPro:IPR002656"
                     /db_xref="SubtiList:BG12893"
                     /db_xref="UniProtKB/Swiss-Prot:O31559"
                     /translation="MQIKEIFMIRCISCLSVVLLHIISMVLMLQAEALADISHTVDSF
                     RTLLMFSTPAFIFISEFLLARSYPDGVPDGFLKKRGKVIFVPFLFIAAIDALLMTSAM
                     GGEVTFLAFVQKYLANVFLGNFIGYFILVIFQFYMLHMMFHEYLKKASPKWVLSISFV
                     VTAAYLGYFSAASPAPASEEGGAFPFFWVPFAGWLFYFCLAYYCGKEYKRFLALLNQY
                     RWVVYGAAIASGALVVTVSYVGEIGMISSKRPDIMLYSTSMIFLCFHLFSKMKHVPKI
                     MMFISNYSFSIYLLHAYFMIIGYVLLLNMPEIPAVPAVLLLFAVCTAGPIMTSWALNK
                     FKYGYLFVGKIYQPKQKKVTVEVRDHAG*"
     gene            892808..893896
                     /gene="icaC"
                     /locus_tag="BSU_08360"
                     /old_locus_tag="BSU08360"
     S_feature       complement(893298..893686)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_911330_911718_c"
                     /HighExp="S6, S8, S7, S5, LBGstat, H2O2, Mt0, Cold, G180,
                     LPhT"
                     /AntisenseName="yfiQ"
                     /AntisenseCor="0.36913176163336098"
                     /AntisenseRegPval="-9.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.976"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S286"
     upshifts        complement(893686)
                     /Source="Nicolas_upshifts"
                     /id="U635"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=1391
                     /SigmaFactorBS="agccggtacggcaggaatTTCGGGCATattcaaaagcaaCAC
                     GTAGCCTATAATCATAAaataggcatgaagcagataaatcgaaaaggaatagttgctg
                     a"
                     /listShort="S286"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(893688..893707)
                     /Source="Nicolas_upshift_promotors"
                     /id="U635"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=1391
                     /SigmaFactorBS="agccggtacggcaggaatTTCGGGCATattcaaaagcaaCAC
                     GTAGCCTATAATCATAAaataggcatgaagcagataaatcgaaaaggaatagttgctg
                     a"
                     /listShort="S286"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(893720..893728)
                     /Source="Nicolas_upshift_promotors"
                     /id="U635"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=1391
                     /SigmaFactorBS="agccggtacggcaggaatTTCGGGCATattcaaaagcaaCAC
                     GTAGCCTATAATCATAAaataggcatgaagcagataaatcgaaaaggaatagttgctg
                     a"
                     /listShort="S286"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(893932..894549)
                     /gene="yfiR"
                     /locus_tag="BSU_08370"
                     /old_locus_tag="BSU08370"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16862575"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16862575; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (TetR/AcrR family)"
                     /protein_id="NP_388718.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08370"
                     /db_xref="EnsemblGenomes-Tr:CAB12666"
                     /db_xref="GOA:O31560"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="PDB:1RKT"
                     /db_xref="SubtiList:BG12894"
                     /db_xref="UniProtKB/Swiss-Prot:O31560"
                     /translation="MSPKVTKEHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGF
                     SRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAEHQSVWASISSYLDELTEGLRDV
                     ADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATI
                     AKFFLNMNDGIIQNALYFDEEKADVSGLAESAKLYLKTVLQADEK*"
     gene            complement(893932..894549)
                     /gene="yfiR"
                     /locus_tag="BSU_08370"
                     /old_locus_tag="BSU08370"
     downshifts      complement(893950)
                     /Source="Nicolas_upshifts"
                     /id="D417"
                     /incds=0
                     /nref=29
                     /ntot=209
                     /MaxReadThrough="2.44114"
                     /MaxDrop="4.07715"
                     /score="22.1532141"
                     /energy="-17.1"
                     /TU="NA"
                     /idTUdmin="U636"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(894515..895768)
                     /gene="yfiS"
                     /locus_tag="BSU_08380"
                     /old_locus_tag="BSU08380"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9811639, 15849754,
                     16850406, 16862575; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388719.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08380"
                     /db_xref="EnsemblGenomes-Tr:CAB12667"
                     /db_xref="GOA:O31561"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12895"
                     /db_xref="UniProtKB/Swiss-Prot:O31561"
                     /translation="MEKPLFRNQKGLMTLLASQTISSLGDWLHILAVLTLAAFQLHAS
                     PLDMSLLMMSFALPVIVLGPVSGLLADRFDRKTIMFLSEIGRALTVISCVYVSELWQL
                     YVLLSVQSCFSSLFLPAKNGKLKELAPEAHIQQAVSVSSIIDNSSKIFGPALGGTLIA
                     AFSIHSVFYINAGAFFLSAVILFFLPRDAFLQKANTPQEKTAALTSIKEGLQFLKRMP
                     LLLTGLLTACVVLFVLQIGDSQAIILIRSFSGAPPELAGWCMAVSGAGMLLTAAITGR
                     RRITSYLLYFSAGTLLLGLATGGAPFLSGMGIAGITLFIFAFFIMGAAFGLVHIPFQI
                     LVQTTVPVDYSGRVFGAIQSATTLASILGMAGGGVLAEWIGVSLAFLVCGCLLIMIGL
                     ITLIGKKIAESRRYLVTKSNKGAQG*"
     gene            complement(894515..895768)
                     /gene="yfiS"
                     /locus_tag="BSU_08380"
                     /old_locus_tag="BSU08380"
     promotor_-10    complement(894576..894595)
                     /Source="Nicolas_upshift_promotors"
                     /id="U636"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig="0.998001998001998"
                     /xcortree=3148
                     /SigmaFactorBS="tcggtgtatcacttgcttttcttgtctgtggcTGCTTGCTga
                     tcatgattgggTTGATTACACTTATAGGTAAgaaaattgcagaaagcaggcgatatct
                     t"
                     /listShort="yfiR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(894588)
                     /Source="Nicolas_upshifts"
                     /id="U636"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig="0.998001998001998"
                     /xcortree=3148
                     /SigmaFactorBS="tcggtgtatcacttgcttttcttgtctgtggcTGCTTGCTga
                     tcatgattgggTTGATTACACTTATAGGTAAgaaaattgcagaaagcaggcgatatct
                     t"
                     /listShort="yfiR"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(894609..894616)
                     /Source="Nicolas_upshift_promotors"
                     /id="U636"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig="0.998001998001998"
                     /xcortree=3148
                     /SigmaFactorBS="tcggtgtatcacttgcttttcttgtctgtggcTGCTTGCTga
                     tcatgattgggTTGATTACACTTATAGGTAAgaaaattgcagaaagcaggcgatatct
                     t"
                     /listShort="yfiR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(895802..895821)
                     /Source="Nicolas_upshift_promotors"
                     /id="U637"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.99100899100899"
                     /xcortree=2727
                     /SigmaFactorBS="cttctattcaatcttctcctttattttacaagaaaaaGATTG
                     TATattgtgtctttttcCCATACAATTAAAAACGACActagtgtcattttaataatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(895820)
                     /Source="Nicolas_upshifts"
                     /id="U637"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.99100899100899"
                     /xcortree=2727
                     /SigmaFactorBS="cttctattcaatcttctcctttattttacaagaaaaaGATTG
                     TATattgtgtctttttcCCATACAATTAAAAACGACActagtgtcattttaataatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(895836..895843)
                     /Source="Nicolas_upshift_promotors"
                     /id="U637"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.492507492507492"
                     /psig="0.99100899100899"
                     /xcortree=2727
                     /SigmaFactorBS="cttctattcaatcttctcctttattttacaagaaaaaGATTG
                     TATattgtgtctttttcCCATACAATTAAAAACGACActagtgtcattttaataatca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    895847..895866
                     /Source="Nicolas_upshift_promotors"
                     /id="U638"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.77022977022977"
                     /psig="0.98901098901099"
                     /xcortree=3204
                     /SigmaFactorBS="atgacactagtgtcgtttttaattgtatgggaaaaagacaca
                     atatacaatctttTTCTTGTAAAATAAAGGAGAagattgaatagaagggagaacattc
                     a"
                     /listShort="yfiT"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        895852
                     /Source="Nicolas_upshifts"
                     /id="U638"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.77022977022977"
                     /psig="0.98901098901099"
                     /xcortree=3204
                     /SigmaFactorBS="atgacactagtgtcgtttttaattgtatgggaaaaagacaca
                     atatacaatctttTTCTTGTAAAATAAAGGAGAagattgaatagaagggagaacattc
                     a"
                     /listShort="yfiT"
                     /GFF_Attribute="listLong"
     CDS             895892..896428
                     /gene="bstA"
                     /locus_tag="BSU_08390"
                     /old_locus_tag="BSU08390"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15581359, 22059487, 24821014, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15581359, 22059487,
                     24821014, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol S-transferase"
                     /protein_id="NP_388720.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08390"
                     /db_xref="EnsemblGenomes-Tr:CAB12668"
                     /db_xref="GOA:O31562"
                     /db_xref="InterPro:IPR023774"
                     /db_xref="InterPro:IPR024775"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="PDB:1RXQ"
                     /db_xref="SubtiList:BG12896"
                     /db_xref="UniProtKB/Swiss-Prot:O31562"
                     /translation="MTSVNLSYPIGEYKPRESISKEQKDKWIQVLEEVPAKLKQAVEV
                     MTDSQLDTPYRDGGWTVRQVVHHLADSHMNSYIRFKLSLTEETPAIRPYDEKAWSELK
                     DSKTADPSGSLALLQELHGRWTALLRTLTDQQFKRGFYHPDTKEIITLENALGLYVWH
                     SHHHIAHITELSRRMGWS*"
     gene            895892..896428
                     /gene="bstA"
                     /locus_tag="BSU_08390"
                     /old_locus_tag="BSU08390"
     CDS             complement(896425..897981)
                     /gene="yfiU"
                     /locus_tag="BSU_08400"
                     /old_locus_tag="BSU08400"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388721.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08400"
                     /db_xref="EnsemblGenomes-Tr:CAB12669"
                     /db_xref="GOA:O31563"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12897"
                     /db_xref="UniProtKB/Swiss-Prot:O31563"
                     /translation="MSEALTEQKSQKWAISLFTIGVFMAALDNGIISAALTTINESFS
                     VSPSWGSWGITLYTLGLSVSVPIVGKLSDRYGRKKLFLIEVCLFGLGSLLVALSQSFP
                     LFLISRLIQALGGGGIFIIGSSHILATLPKEKQGKALGLLGAMNGMAAVLGPNIGSFL
                     LDWTGSWHWLFLINLPIAVLLVVFGACFIAETKAPEAKRLDAAGIFLLSLSILAVMYG
                     MTNLDGANLLHSLGNPEVYGCIIFGILCFAALISYEKRVEMRGGDPILAYSLLRNHMF
                     QRTLIIGLLSGGLLAAVIFIPSYVEQYLGVPAAKAGYWMTPLALASGIGAWLGGALTD
                     KKGPVKTVILSGIISCAGFALFPLWVTEKWEFVIASVAAGIGFGFLLGAPLNVLVSEA
                     AKTNKGTALGTLSLVRQIGLTLAPTLYAGFITAGFDQIGDEINSRLSDSGYSEKAMQM
                     IPEIDSSEVSSLQEQIERIPVPEVKTAISDAIHASVASGYDHLYAAAAVVSLLVIAAI
                     SIPAFRRQKR*"
     gene            complement(896425..897981)
                     /gene="yfiU"
                     /locus_tag="BSU_08400"
                     /old_locus_tag="BSU08400"
     promotor_-10    complement(898003..898021)
                     /Source="Nicolas_upshift_promotors"
                     /id="U639"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.623376623376623"
                     /psig="0.623376623376623"
                     /xcortree=795
                     /SigmaFactorBS="tgtcatccgcaaactgcgggagcaggctttttttatttgaCA
                     TTtagttcatttaaaatGAATAATATATTTCAAGTGaactaaaaggagttgacgaaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(898020)
                     /Source="Nicolas_upshifts"
                     /id="U639"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.623376623376623"
                     /psig="0.623376623376623"
                     /xcortree=795
                     /SigmaFactorBS="tgtcatccgcaaactgcgggagcaggctttttttatttgaCA
                     TTtagttcatttaaaatGAATAATATATTTCAAGTGaactaaaaggagttgacgaaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(898037..898040)
                     /Source="Nicolas_upshift_promotors"
                     /id="U639"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.623376623376623"
                     /psig="0.623376623376623"
                     /xcortree=795
                     /SigmaFactorBS="tgtcatccgcaaactgcgggagcaggctttttttatttgaCA
                     TTtagttcatttaaaatGAATAATATATTTCAAGTGaactaaaaggagttgacgaaaa
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(898092..898574)
                     /gene="yfiV"
                     /locus_tag="BSU_08410"
                     /old_locus_tag="BSU08410"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 18990441; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (MarR
                     family)"
                     /protein_id="NP_388722.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08410"
                     /db_xref="EnsemblGenomes-Tr:CAB12670"
                     /db_xref="GOA:O31564"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR011991"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG12898"
                     /db_xref="UniProtKB/Swiss-Prot:O31564"
                     /translation="MEYNLHDTTVLNENILSSEEREIWVLYMKVLTSAGLGDVSEWMK
                     LDMSMPQMKVLMLLNNHGTLKVSDIAEKMGASLSNTTGLLDRLEKSGFVKRSHSEEDR
                     RSVVVQLTENAKKIFRGLYEKGHLKLKRSLELLSPEEKQAVYEGLSILSRALENAKKE
                     *"
     gene            complement(898092..898574)
                     /gene="yfiV"
                     /locus_tag="BSU_08410"
                     /old_locus_tag="BSU08410"
     downshifts      complement(898108)
                     /Source="Nicolas_upshifts"
                     /id="D418"
                     /incds=0
                     /nref=58
                     /ntot=177
                     /MaxReadThrough="1.47849"
                     /MaxDrop="4.15907"
                     /score="27.2704527"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U640"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(898599..898618)
                     /Source="Nicolas_upshift_promotors"
                     /id="U640"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.998001998001998"
                     /xcortree=2019
                     /SigmaFactorBS="atttttcggacaaagtcccgcatgcggtttctgctcACTTTC
                     TttcaggagtgaaaaTCGAGTAATATGGTAAGAGGagtgaatgatgaggaagtgatga
                     a"
                     /listShort="yfiV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(898615)
                     /Source="Nicolas_upshifts"
                     /id="U640"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.998001998001998"
                     /xcortree=2019
                     /SigmaFactorBS="atttttcggacaaagtcccgcatgcggtttctgctcACTTTC
                     TttcaggagtgaaaaTCGAGTAATATGGTAAGAGGagtgaatgatgaggaagtgatga
                     a"
                     /listShort="yfiV"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(898633..898639)
                     /Source="Nicolas_upshift_promotors"
                     /id="U640"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.542457542457542"
                     /psig="0.998001998001998"
                     /xcortree=2019
                     /SigmaFactorBS="atttttcggacaaagtcccgcatgcggtttctgctcACTTTC
                     TttcaggagtgaaaaTCGAGTAATATGGTAAGAGGagtgaatgatgaggaagtgatga
                     a"
                     /listShort="yfiV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    898660..898667
                     /Source="Nicolas_upshift_promotors"
                     /id="U641"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.544455544455544"
                     /psig=1
                     /xcortree=2519
                     /SigmaFactorBS="tgaaagaaagtgagcagaaaccgcatgcgggACTTTGTCcga
                     aaaataacggTAGTGTATAATGAGTTGGAGattattgggggagaggatcgaactagaa
                     t"
                     /listShort="mprF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    898681..898700
                     /Source="Nicolas_upshift_promotors"
                     /id="U641"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.544455544455544"
                     /psig=1
                     /xcortree=2519
                     /SigmaFactorBS="tgaaagaaagtgagcagaaaccgcatgcgggACTTTGTCcga
                     aaaataacggTAGTGTATAATGAGTTGGAGattattgggggagaggatcgaactagaa
                     t"
                     /listShort="mprF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        898689
                     /Source="Nicolas_upshifts"
                     /id="U641"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.544455544455544"
                     /psig=1
                     /xcortree=2519
                     /SigmaFactorBS="tgaaagaaagtgagcagaaaccgcatgcgggACTTTGTCcga
                     aaaataacggTAGTGTATAATGAGTTGGAGattattgggggagaggatcgaactagaa
                     t"
                     /listShort="mprF"
                     /GFF_Attribute="listLong"
     CDS             898746..901316
                     /gene="mprF"
                     /locus_tag="BSU_08425"
                     /old_locus_tag="BSU08425"
                     /EC_number="2.3.2.3"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:2139213, 2490162, 12427923, 14702396, 15849754,
                     16299297, 16850406, 17042784, 19074395, 21306448,
                     26261323"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2139213, 2490162,
                     12427923, 14702396, 15849754, 16299297, 16850406,
                     17042784, 19074395, 21306448, 26261323; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol lysyltransferase involved
                     in tRNA-dependent lysinylation of phospholipids"
                     /protein_id="YP_003097695.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08425"
                     /db_xref="EnsemblGenomes-Tr:CAX52582"
                     /db_xref="GOA:C0H3X7"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="InterPro:IPR022791"
                     /db_xref="InterPro:IPR024320"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X7"
                     /translation="MLIKKNALSILKIVFPIAVLLFVIYQSKKELTNLSFKRTLMVIN
                     GLERTDLFMLVLIGLLAVAAMSLYDYVLKYSLRLSITNGKVFRVSWIANSFNNVLGFG
                     GLAGVGLRMMFYKEHTKDHKALVKGIAWLTSSMLLGLSVFSIFVAARVLPVDEVIHEK
                     PWLWAVVIGFALILPLSLAVSKIKDRKAGDEENADKVKNPIFAYIGASVVEWLMAGTV
                     IYFALFAMGIHADIRYVFGVFVIAAIGGMISLVPGGFGSFDLLFLLGMEQLGYHQEAI
                     VTSIVLYRLAYSFIPFILGLFFAAGDLTENTMKRLETNPRIAPAIETTNVLLVVQRAV
                     LVRILQGSLSLIVFVAGLIVLASVSLPIDRLTVIPHIPRPALLLFNGLSLSSALILLI
                     LPIELYKRTKRSYTMAITALVGGFVFSFLKGLNISAIFVLPMIIVLLVLLKKQFVREQ
                     ASYTLGQLIFAVALFTVALFNYNLIAGFIWDRMKKVLRHEYFVHSTSHITHATIMAII
                     IVPLFFLIFTVVYHKRTKPIGEKADPERLAAFLNEKGGNALSHLGFLGDKRFYFSSDG
                     NALLLFGKIARRLVVLGDPSGQRESFPLVLEEFLNEAHQKGFSVLFYQIEREDMALYH
                     DFGYNFFKLGEEAYVDLNTFTLTGKKKAGLRAINNRFEREEYTFHVDHPPFSDAFLEE
                     LKQISDEWLGSKKEKGFSLGFFDPSYLQKAPIAYMKNAEGEIVAFANVMPMYQEGEIS
                     VDLMRYRGDAPNGIMDALFIRMFLWAKEEGCTSFNMGMAPLANVGTAFTSFWSERFAA
                     VIFNNVRYMYSFSGLRAFKEKYKPEWRGKYLAYRKNRSLSVTMFLVTRLIGKSKKDSV
                     *"
     gene            898746..901316
                     /gene="mprF"
                     /locus_tag="BSU_08425"
                     /old_locus_tag="BSU08425"
     downshifts      901287
                     /Source="Nicolas_upshifts"
                     /id="D419"
                     /incds=0
                     /nref=121
                     /ntot=252
                     /MaxReadThrough="1.79352"
                     /MaxDrop="5.78159"
                     /score="49.2396824"
                     /energy="-16.1"
                     /TU="NA"
                     /idTUdmin="U641"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(901334..902311)
                     /gene="sxzY"
                     /locus_tag="BSU_08440"
                     /old_locus_tag="BSU08440"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 12354229, 19254027,
                     24606332; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="xenosiderophore schizokinen (dihydroxamate)
                     transporter binding lipoprotein"
                     /protein_id="NP_388725.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08440"
                     /db_xref="EnsemblGenomes-Tr:CAB12673"
                     /db_xref="GOA:O31567"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="SubtiList:BG12901"
                     /db_xref="UniProtKB/Swiss-Prot:O31567"
                     /translation="MKKHISMLFVFLMAVMVLSACNSSESSSNSEVSSSKTRTVKHAM
                     GTSDNIPANPKRIVVLTNEGTEALLALGIKPVGAVKSWKGDPWYDYLKDDMKGVKNVG
                     LETEPNVEAIAELKPDLIIGNKVRQEKIYDQLNAIAPTVFAESLAGNWKDNLTLYANA
                     VNKADKGKEVIADFDKRVSDLKNKLGDQTNKTVSVVRFLSGESRIYYTDSFPGIILDQ
                     LGFKRPEKQVELFKKQKDQFTFSTDSKESIPDMDADVLFYFTYKADNAKENEKWANQW
                     TSSSLWKNLKAVKSGNAHEVDDVVWTTAGGIKAANYLLDDIETYFLKTK*"
     gene            complement(901334..902311)
                     /gene="sxzY"
                     /locus_tag="BSU_08440"
                     /old_locus_tag="BSU08440"
     downshifts      complement(901345)
                     /Source="Nicolas_upshifts"
                     /id="D420"
                     /incds=0
                     /nref=165
                     /ntot=248
                     /MaxReadThrough="1.28876"
                     /MaxDrop="7.70135"
                     /score="35.2605181"
                     /energy="-16.1"
                     /TU="NA"
                     /idTUdmin="U643"
                     /TUdmin="-4"
                     /isTUend="TRUE"
     promotor_-35    902326..902333
                     /Source="Nicolas_upshift_promotors"
                     /id="U642"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.458541458541459"
                     /psig="0.998001998001998"
                     /xcortree=2100
                     /SigmaFactorBS="gcatgctgatatgctttttcatctttttcctcccaaTATTGA
                     AAttcattatcatttaGATCATAATAAGCAGTGTTAagagtgtcaatccctaattgag
                     g"
                     /listShort="S287, yfiZ, yfhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(902338..902357)
                     /Source="Nicolas_upshift_promotors"
                     /id="U643"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig=1
                     /xcortree=2109
                     /SigmaFactorBS="tgtaatgtttgtttttgagaataatcctcaattaggGATTGA
                     CActcttaacactgctTATTATGATCTAAATGATAAtgaatttcaatattgggaggaa
                     a"
                     /listShort="yfiY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    902348..902367
                     /Source="Nicolas_upshift_promotors"
                     /id="U642"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.458541458541459"
                     /psig="0.998001998001998"
                     /xcortree=2100
                     /SigmaFactorBS="gcatgctgatatgctttttcatctttttcctcccaaTATTGA
                     AAttcattatcatttaGATCATAATAAGCAGTGTTAagagtgtcaatccctaattgag
                     g"
                     /listShort="S287, yfiZ, yfhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       902350..902441
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_920382_920473"
                     /HighExp="dia0, Lbexp, LBGexp, H2O2, G150, GM 10, Oxctl,
                     dia15, Paraq, GM 5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S287"
     upshifts        902350
                     /Source="Nicolas_upshifts"
                     /id="U642"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.458541458541459"
                     /psig="0.998001998001998"
                     /xcortree=2100
                     /SigmaFactorBS="gcatgctgatatgctttttcatctttttcctcccaaTATTGA
                     AAttcattatcatttaGATCATAATAAGCAGTGTTAagagtgtcaatccctaattgag
                     g"
                     /listShort="S287, yfiZ, yfhA"
                     /GFF_Attribute="listLong"
     upshifts        complement(902355)
                     /Source="Nicolas_upshifts"
                     /id="U643"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig=1
                     /xcortree=2109
                     /SigmaFactorBS="tgtaatgtttgtttttgagaataatcctcaattaggGATTGA
                     CActcttaacactgctTATTATGATCTAAATGATAAtgaatttcaatattgggaggaa
                     a"
                     /listShort="yfiY"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(902372..902379)
                     /Source="Nicolas_upshift_promotors"
                     /id="U643"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.96003996003996"
                     /psig=1
                     /xcortree=2109
                     /SigmaFactorBS="tgtaatgtttgtttttgagaataatcctcaattaggGATTGA
                     CActcttaacactgctTATTATGATCTAAATGATAAtgaatttcaatattgggaggaa
                     a"
                     /listShort="yfiY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             902442..903443
                     /gene="sxzZ"
                     /locus_tag="BSU_08450"
                     /old_locus_tag="BSU08450"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16672620, 16850406, 19254027"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16672620, 16850406, 19254027; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="xenosiderophore schizokinen (dihydroxamate)
                     transporter (permease)"
                     /protein_id="NP_388726.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08450"
                     /db_xref="EnsemblGenomes-Tr:CAB12674"
                     /db_xref="GOA:O31568"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12902"
                     /db_xref="UniProtKB/Swiss-Prot:O31568"
                     /translation="MICKKASSKWIVLVCLIFILLTAVCASVVYGYTGTSWRQVYQAF
                     TSFNGTNEHVIIKDVRLPRALVATVVGASLAAAGALMQALTKNPLASPGIFGINAGAG
                     FFIVAGSFFLHIQSPQALVWSSFLGAAFTAAIVYAAGSLGREGLTPIKLTLAGAAMAA
                     MFSSLTQGLLSVNELELAQVLFWLTGSVQGRSLDLLMTMFPYAAAALVICFFLGQKIN
                     LLVMGEDVAKGLGQKTGLLKFVMALCVVMLAGSAVAIAGPISFIGIIIPHFARFVVGN
                     DYRWVLPFSAVLGAILLVCADIGARYIIMPQEVPVGVMTAIIGMPVFVYIARRGAKL*
                     "
     gene            902442..903443
                     /gene="sxzZ"
                     /locus_tag="BSU_08450"
                     /old_locus_tag="BSU08450"
     CDS             903440..904471
                     /gene="sxzA"
                     /locus_tag="BSU_08460"
                     /old_locus_tag="BSU08460"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12354229, 15849754, 16672620, 16850406, 19254027"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12354229, 15849754,
                     16672620, 16850406, 19254027; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="xenosiderophore schizokinen (dihydroxamate)
                     transporter (permease)"
                     /protein_id="NP_388727.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08460"
                     /db_xref="EnsemblGenomes-Tr:CAB12675"
                     /db_xref="GOA:O31569"
                     /db_xref="InterPro:IPR000522"
                     /db_xref="InterPro:IPR035568"
                     /db_xref="SubtiList:BG12876"
                     /db_xref="UniProtKB/Swiss-Prot:O31569"
                     /translation="MKLRFGVTAAEKKAWIVFLVLLGLTAAVLIISAGLGQRFIPPWD
                     VAKTFFGAGSKLDELMIMSFRMPRILTALCAGVCLAAAGAILQGLVRNPLASPDIIGI
                     TGGAAVAVVLLMMFFSDRSSSLTISLSWLPAAAFIGASAVGLIVYLLAYKNGASTFRL
                     VLIGIGFSMSAQAMTTLLMIKGPIYRASQANVYITGSVYGSNWQHVKIAIILSVILLF
                     ICFVALKNMNIQVLGEDIAAGAGSAVQRNRFFLLLLSTALTGCAVSVAGTIGFVGLMA
                     PHIARRLVGSSYGALLPASALIGALLVLTADIVGRTLFAPVEVPAGVFTAAIGAPYFI
                     YLLYKTRNS*"
     gene            903440..904471
                     /gene="sxzA"
                     /locus_tag="BSU_08460"
                     /old_locus_tag="BSU08460"
     downshifts      904452
                     /Source="Nicolas_upshifts"
                     /id="D421"
                     /incds=0
                     /nref=24
                     /ntot=154
                     /MaxReadThrough="3.26686"
                     /MaxDrop="4.27732"
                     /score="19.6751667"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U642"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     promotor_-35    904522..904524
                     /Source="Nicolas_upshift_promotors"
                     /id="U644"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.945054945054945"
                     /psig="0.999000999001"
                     /xcortree=2943
                     /SigmaFactorBS="attttcttaaaaaagaaaatgggtttttttgataatgacTGA
                     agattcgtaattattTTTGCTATACTGACAGAGACattgataaagaaagggcggcaga
                     t"
                     /listShort="yfhB, yfhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    904540..904559
                     /Source="Nicolas_upshift_promotors"
                     /id="U644"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.945054945054945"
                     /psig="0.999000999001"
                     /xcortree=2943
                     /SigmaFactorBS="attttcttaaaaaagaaaatgggtttttttgataatgacTGA
                     agattcgtaattattTTTGCTATACTGACAGAGACattgataaagaaagggcggcaga
                     t"
                     /listShort="yfhB, yfhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        904543
                     /Source="Nicolas_upshifts"
                     /id="U644"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.945054945054945"
                     /psig="0.999000999001"
                     /xcortree=2943
                     /SigmaFactorBS="attttcttaaaaaagaaaatgggtttttttgataatgacTGA
                     agattcgtaattattTTTGCTATACTGACAGAGACattgataaagaaagggcggcaga
                     t"
                     /listShort="yfhB, yfhC"
                     /GFF_Attribute="listLong"
     CDS             904586..905467
                     /gene="yfhB"
                     /locus_tag="BSU_08470"
                     /old_locus_tag="BSU08470"
                     /EC_number="5.1.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative isomerase"
                     /protein_id="NP_388728.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08470"
                     /db_xref="EnsemblGenomes-Tr:CAB12676"
                     /db_xref="GOA:O31570"
                     /db_xref="InterPro:IPR003719"
                     /db_xref="SubtiList:BG12877"
                     /db_xref="UniProtKB/Swiss-Prot:O31570"
                     /translation="MKEAEVLKYEAFTSSPGKGNPAGVVLQGDDYTEDEMQIIAERAG
                     YSETSFIRKSESADLELRYFTPGHEMNLCGHATVASLYALCEKGMLESGKTYSIQTKA
                     GILPVKISEKDGRIHITLEQASPQFKPFTGDRKKLADALGITDEDFHEDLPIVFGSTG
                     IWTAIVPLKSLEASKKMVPDNKQFPEVLVDLPKASVHPFTFETVHPDSDLHGRHFSSP
                     YSGTIEDPVTGTASGVMGAYMKHYGNAEQHKFIIEQGQEIGKDGKVEIEMNEAGGHVK
                     VNMTGTAVYSETRILKI*"
     gene            904586..905467
                     /gene="yfhB"
                     /locus_tag="BSU_08470"
                     /old_locus_tag="BSU08470"
     promotor_-35    905478..905485
                     /Source="Nicolas_upshift_promotors"
                     /id="U645"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.719280719280719"
                     /psig="0.998001998001998"
                     /xcortree=2110
                     /SigmaFactorBS="cgtattcttaaaatctaatacggatgatGGTTTACAaaaaga
                     tgcactttcCGTTATCATTATGAAATGATaatcattttcaattgcataggaaggtgag
                     a"
                     /listShort="yfhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    905501..905520
                     /Source="Nicolas_upshift_promotors"
                     /id="U645"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.719280719280719"
                     /psig="0.998001998001998"
                     /xcortree=2110
                     /SigmaFactorBS="cgtattcttaaaatctaatacggatgatGGTTTACAaaaaga
                     tgcactttcCGTTATCATTATGAAATGATaatcattttcaattgcataggaaggtgag
                     a"
                     /listShort="yfhC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        905510
                     /Source="Nicolas_upshifts"
                     /id="U645"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.719280719280719"
                     /psig="0.998001998001998"
                     /xcortree=2110
                     /SigmaFactorBS="cgtattcttaaaatctaatacggatgatGGTTTACAaaaaga
                     tgcactttcCGTTATCATTATGAAATGATaatcattttcaattgcataggaaggtgag
                     a"
                     /listShort="yfhC"
                     /GFF_Attribute="listLong"
     CDS             905555..906139
                     /gene="yfhC"
                     /locus_tag="BSU_08480"
                     /old_locus_tag="BSU08480"
                     /EC_number="1.6.99.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12354229, 22287527;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase (nitroreductase family)"
                     /protein_id="NP_388729.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08480"
                     /db_xref="EnsemblGenomes-Tr:CAB12677"
                     /db_xref="GOA:O31571"
                     /db_xref="InterPro:IPR000415"
                     /db_xref="InterPro:IPR026021"
                     /db_xref="InterPro:IPR029479"
                     /db_xref="SubtiList:BG12878"
                     /db_xref="UniProtKB/Swiss-Prot:O31571"
                     /translation="MPQTEQIHQHSVLRDIIRSRRSIRKFKQEPVPSAVILDMLETAK
                     YAPNHRVTEPWRFIYVSSETGKANLINTFAAFSKKSKPDMTEEKLQNFKNTLGRVPGF
                     LLVVFQEDENERARDDDFAATSSLIQNLQLLAWEKGIGMVWKSGKILYDKEVHQAFGL
                     QDNERFAAIIQTGYPDEAPEVKKRTPIRDRFTEM*"
     gene            905555..906139
                     /gene="yfhC"
                     /locus_tag="BSU_08480"
                     /old_locus_tag="BSU08480"
     downshifts      906126
                     /Source="Nicolas_upshifts"
                     /id="D422"
                     /incds=0
                     /nref=208
                     /ntot=262
                     /MaxReadThrough="3.27483"
                     /MaxDrop="6.40857"
                     /score="21.7703837"
                     /energy="-18.2"
                     /TU="U645"
                     /idTUdmin="U644"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(906178..906369)
                     /gene="yfhD"
                     /locus_tag="BSU_08490"
                     /old_locus_tag="BSU08490"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388730.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08490"
                     /db_xref="EnsemblGenomes-Tr:CAB12678"
                     /db_xref="InterPro:IPR025435"
                     /db_xref="SubtiList:BG12879"
                     /db_xref="UniProtKB/Swiss-Prot:O31572"
                     /translation="MGRNHIHKNRDKNKQKLPQVPDALKRETDGVYEEYSTELADADD
                     REAQERAKAADNRAKKKSR*"
     gene            complement(906178..906369)
                     /gene="yfhD"
                     /locus_tag="BSU_08490"
                     /old_locus_tag="BSU08490"
     downshifts      complement(906196)
                     /Source="Nicolas_upshifts"
                     /id="D423"
                     /incds=0
                     /nref=65
                     /ntot=197
                     /MaxReadThrough="0.436919999999999"
                     /MaxDrop="8.51174"
                     /score="30.1998663"
                     /energy="-18.2"
                     /TU="NA"
                     /idTUdmin="U649"
                     /TUdmin=7
                     /isTUend="TRUE"
     upshifts        complement(906401)
                     /Source="Nicolas_upshifts"
                     /id="U646"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=840
                     /SigmaFactorBS="cggaaaaagctgctaagcggaagtaGGAATACatagcccctt
                     aaaaCCAAATACTATAtttgtttgatatcactttttagggggaatttgatatgggcag
                     a"
                     /listShort="yfhD"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(906404..906415)
                     /Source="Nicolas_upshift_promotors"
                     /id="U646"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=840
                     /SigmaFactorBS="cggaaaaagctgctaagcggaagtaGGAATACatagcccctt
                     aaaaCCAAATACTATAtttgtttgatatcactttttagggggaatttgatatgggcag
                     a"
                     /listShort="yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(906430..906436)
                     /Source="Nicolas_upshift_promotors"
                     /id="U646"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=840
                     /SigmaFactorBS="cggaaaaagctgctaagcggaagtaGGAATACatagcccctt
                     aaaaCCAAATACTATAtttgtttgatatcactttttagggggaatttgatatgggcag
                     a"
                     /listShort="yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(906436..906546)
                     /gene="yfhE"
                     /locus_tag="BSU_08500"
                     /old_locus_tag="BSU08500"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388731.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08500"
                     /db_xref="EnsemblGenomes-Tr:CAB12679"
                     /db_xref="InterPro:IPR025437"
                     /db_xref="SubtiList:BG12880"
                     /db_xref="UniProtKB/Swiss-Prot:O31573"
                     /translation="MEKKREKHQQGANLKKMQEVLYSGEFKKAEKAAKRK*"
     gene            complement(906436..906546)
                     /gene="yfhE"
                     /locus_tag="BSU_08500"
                     /old_locus_tag="BSU08500"
     promotor_-10    complement(906575..906586)
                     /Source="Nicolas_upshift_promotors"
                     /id="U647"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1140
                     /SigmaFactorBS="actctcacagctgatagcggaccgaaagacTGTATAAaaaca
                     gcaggaagcGTCAACCTTAAGaataacatggttgaaggaggtcctttttatggaaaaa
                     a"
                     /listShort="yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(906577)
                     /Source="Nicolas_upshifts"
                     /id="U647"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1140
                     /SigmaFactorBS="actctcacagctgatagcggaccgaaagacTGTATAAaaaca
                     gcaggaagcGTCAACCTTAAGaataacatggttgaaggaggtcctttttatggaaaaa
                     a"
                     /listShort="yfhE, yfhD"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(906601..906607)
                     /Source="Nicolas_upshift_promotors"
                     /id="U647"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1140
                     /SigmaFactorBS="actctcacagctgatagcggaccgaaagacTGTATAAaaaca
                     gcaggaagcGTCAACCTTAAGaataacatggttgaaggaggtcctttttatggaaaaa
                     a"
                     /listShort="yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(906601..907512)
                     /gene="yfhF"
                     /locus_tag="BSU_08510"
                     /old_locus_tag="BSU08510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative nucleotide-or NAD-binding protein"
                     /protein_id="NP_388732.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08510"
                     /db_xref="EnsemblGenomes-Tr:CAB12680"
                     /db_xref="GOA:O31574"
                     /db_xref="InterPro:IPR001509"
                     /db_xref="InterPro:IPR010099"
                     /db_xref="InterPro:IPR013549"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG12881"
                     /db_xref="UniProtKB/Swiss-Prot:O31574"
                     /translation="MNIAMTGGTGFLGQHLTGVLTRQGHHVYILSRNARETEQKNMTY
                     VQWLSEGAAPEQELPHIDVWINLAGKSIFGRWTEKTKQHILSSRINATREVQRLIQKQ
                     KEKPKTLIQASAVGIYGTSLEKTFTEDSATSDEDFLSHTAHLWEKEGQHIEAMGIRTV
                     YARFGVMLGEKGALPLMILPYKFLAGGTIGTGRQWLSWIHVEDAAQMIRYAVENAGIS
                     GPMNVTAPNPVDMKQFGKTIARVKHRPHWLPVPEFFLSKALGEMSLLIVKGQRALPKK
                     AITSGFRFTYSDLEFALSQLIADRKTV*"
     gene            complement(906601..907512)
                     /gene="yfhF"
                     /locus_tag="BSU_08510"
                     /old_locus_tag="BSU08510"
     promotor_-35    907398..907401
                     /Source="Nicolas_upshift_promotors"
                     /id="U648"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.999000999001"
                     /xcortree=2741
                     /SigmaFactorBS="acagccattggacatatgtcatatttttttGTTCagtttccc
                     ttgcgtttCTTGATAAAATATAAACATGgtgtccctggcgggtaagaacgcctgtcag
                     a"
                     /listShort="S288, recX, yfhH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    907418..907437
                     /Source="Nicolas_upshift_promotors"
                     /id="U648"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.999000999001"
                     /xcortree=2741
                     /SigmaFactorBS="acagccattggacatatgtcatatttttttGTTCagtttccc
                     ttgcgtttCTTGATAAAATATAAACATGgtgtccctggcgggtaagaacgcctgtcag
                     a"
                     /listShort="S288, recX, yfhH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       907428..907600
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_925460_925632"
                     /HighExp="LBGstat, Lbtran, T1.30H, T2.0H, T2.30H, M9-stat,
                     T1.0H, T3.0H, Sw, G180"
                     /AntisenseName="yfhF"
                     /AntisenseCor="-5.3501479327985699E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S288"
     upshifts        907428
                     /Source="Nicolas_upshifts"
                     /id="U648"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.999000999001"
                     /xcortree=2741
                     /SigmaFactorBS="acagccattggacatatgtcatatttttttGTTCagtttccc
                     ttgcgtttCTTGATAAAATATAAACATGgtgtccctggcgggtaagaacgcctgtcag
                     a"
                     /listShort="S288, recX, yfhH"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(907534..907552)
                     /Source="Nicolas_upshift_promotors"
                     /id="U649"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=135
                     /SigmaFactorBS="aacggcatcttaatctcccttctcaggcctgaaacgCGTTTT
                     CttttattacaatgAGGTAAAGTATATTTATTAgaacgatgaggagagatgttcatga
                     a"
                     /listShort="yfhF, yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(907548)
                     /Source="Nicolas_upshifts"
                     /id="U649"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=135
                     /SigmaFactorBS="aacggcatcttaatctcccttctcaggcctgaaacgCGTTTT
                     CttttattacaatgAGGTAAAGTATATTTATTAgaacgatgaggagagatgttcatga
                     a"
                     /listShort="yfhF, yfhE, yfhD"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(907566..907572)
                     /Source="Nicolas_upshift_promotors"
                     /id="U649"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=135
                     /SigmaFactorBS="aacggcatcttaatctcccttctcaggcctgaaacgCGTTTT
                     CttttattacaatgAGGTAAAGTATATTTATTAgaacgatgaggagagatgttcatga
                     a"
                     /listShort="yfhF, yfhE, yfhD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             907601..908395
                     /gene="recX"
                     /locus_tag="BSU_08520"
                     /old_locus_tag="BSU08520"
                     /function="16.3: Control"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8946165, 10869079, 12547390, 23284295, 24285298"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8946165, 10869079,
                     12547390, 23284295, 24285298; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein RecX"
                     /protein_id="NP_388733.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08520"
                     /db_xref="EnsemblGenomes-Tr:CAB12681"
                     /db_xref="GOA:O31575"
                     /db_xref="InterPro:IPR003783"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG12882"
                     /db_xref="UniProtKB/Swiss-Prot:O31575"
                     /translation="MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKE
                     LDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEVEDHLKKKETSPPVIAEVIHRLN
                     DYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
                     AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEAL
                     RLHAEKAFRKYRYDGSYESAMKVKQFLFRKGFSLDLIEQLLQEEEY*"
     gene            907601..908395
                     /gene="recX"
                     /locus_tag="BSU_08520"
                     /old_locus_tag="BSU08520"
     CDS             908397..908711
                     /gene="yfhH"
                     /locus_tag="BSU_08530"
                     /old_locus_tag="BSU08530"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388734.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08530"
                     /db_xref="EnsemblGenomes-Tr:CAB12682"
                     /db_xref="InterPro:IPR014938"
                     /db_xref="InterPro:IPR036289"
                     /db_xref="PDB:1SF9"
                     /db_xref="SubtiList:BG12883"
                     /db_xref="UniProtKB/Swiss-Prot:O31576"
                     /translation="MEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELAVLERKIT
                     MAKAYLLNPEDYSPGETYRVENTEDEFTISYLNGVFAWGYRTSSPQQEEALPISVLQE
                     KE*"
     gene            908397..908711
                     /gene="yfhH"
                     /locus_tag="BSU_08530"
                     /old_locus_tag="BSU08530"
     S_feature       complement(908619..908887)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_926651_926919_c"
                     /HighExp="S8, S6, S5, S7, C30, S4, nit, ferm, BT, G135"
                     /AntisenseName="yfhH"
                     /AntisenseCor="-0.53569713251514905"
                     /AntisenseRegPval="-20.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S289"
     downshifts      908701
                     /Source="Nicolas_upshifts"
                     /id="D424"
                     /incds=0
                     /nref=71
                     /ntot=206
                     /MaxReadThrough="2.93348"
                     /MaxDrop="5.2859"
                     /score="24.7235138"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U648"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    908785..908790
                     /Source="Nicolas_upshift_promotors"
                     /id="U650"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.460539460539461"
                     /psig=1
                     /xcortree=2471
                     /SigmaFactorBS="cagcacatttacacgaattcttaaagaaaaaatcATTGAAtt
                     cacttgaaaaatcTTTTAAGATGAAACTCGTTGttttttaaaatcaaaggaggcgatg
                     a"
                     /listShort="yfhI, S290, S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    908806..908825
                     /Source="Nicolas_upshift_promotors"
                     /id="U650"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.460539460539461"
                     /psig=1
                     /xcortree=2471
                     /SigmaFactorBS="cagcacatttacacgaattcttaaagaaaaaatcATTGAAtt
                     cacttgaaaaatcTTTTAAGATGAAACTCGTTGttttttaaaatcaaaggaggcgatg
                     a"
                     /listShort="yfhI, S290, S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        908811
                     /Source="Nicolas_upshifts"
                     /id="U650"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.460539460539461"
                     /psig=1
                     /xcortree=2471
                     /SigmaFactorBS="cagcacatttacacgaattcttaaagaaaaaatcATTGAAtt
                     cacttgaaaaatcTTTTAAGATGAAACTCGTTGttttttaaaatcaaaggaggcgatg
                     a"
                     /listShort="yfhI, S290, S291, yfhJ"
                     /GFF_Attribute="listLong"
     CDS             908854..910047
                     /gene="yfhI"
                     /locus_tag="BSU_08540"
                     /old_locus_tag="BSU08540"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22226636; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388735.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08540"
                     /db_xref="EnsemblGenomes-Tr:CAB12683"
                     /db_xref="GOA:O31577"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12884"
                     /db_xref="UniProtKB/Swiss-Prot:O31577"
                     /translation="MSIKNPSVKFIIFVLMICTFSIGYTEYAVMGILTSIANDFHIQV
                     SSAGLLVTAYAASVCLTGPLVTIISVKLPRKPVLLGLMAIFILSNLMSALAPNFAVLA
                     ISRILSASIHGAFFAIAMVFASEMVPPEKRAAAAASMNGGLTVALMLGVPFGSYLGDV
                     LNWRAVFSIITALGVIGFLGLMAAVPNRKPKVIPMLMNEWGVFKHKQVLFSFAITILG
                     YSGVFIAYTFIEPILRHSAGFSTVGITGALFAYGLGGVAGNFFAGKVPLPLLTRTMIG
                     VMIGLIGVLAVFPYIAIYPAAAIVATFLFGACAFGTPPLLQTKVISSSEGGTTIAAAV
                     SVSAFNLANALGAWIGGMILNGTGSYSWLFAGGALMTACGLVLSTFAHLSEKKSVYEY
                     QVNKG*"
     gene            908854..910047
                     /gene="yfhI"
                     /locus_tag="BSU_08540"
                     /old_locus_tag="BSU08540"
     S_feature       910048..910282
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_928080_928314"
                     /HighExp="G180, Paraq, C30, Oxctl, H2O2, G135, G150, S8,
                     Heat, LBGstat"
                     /AntisenseName="sspK"
                     /AntisenseCor="1.9886505145521101E-2"
                     /AntisenseRegPval="-0.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S290"
     CDS             complement(910080..910232)
                     /gene="sspK"
                     /locus_tag="BSU_08550"
                     /old_locus_tag="BSU08550"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10806362"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10806362; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein"
                     /protein_id="YP_054573.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08550"
                     /db_xref="EnsemblGenomes-Tr:CAE01449"
                     /db_xref="GOA:Q7WY75"
                     /db_xref="InterPro:IPR012611"
                     /db_xref="SubtiList:BG14175"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY75"
                     /translation="MVRNKEKGFPYENENKFQGEPRAKDDYASKRADGSINQHPQERM
                     RASGKR*"
     gene            complement(910080..910232)
                     /gene="sspK"
                     /locus_tag="BSU_08550"
                     /old_locus_tag="BSU08550"
     downshifts      complement(910097)
                     /Source="Nicolas_upshifts"
                     /id="D425"
                     /incds=0
                     /nref=24
                     /ntot=45
                     /MaxReadThrough="2.36419"
                     /MaxDrop="4.9889"
                     /score="20.2715496"
                     /energy="-12.3"
                     /TU="NA"
                     /idTUdmin="U652"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    910261..910268
                     /Source="Nicolas_upshift_promotors"
                     /id="U651"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig="0.995004995004995"
                     /xcortree=2031
                     /SigmaFactorBS="tcggaccatgtcatatccccctaggttcgagatcaaaAAGTT
                     GCGtcttttcagatgaAGACGTAAGGTTAGTATATGgagaacaccacgtaataaagcg
                     t"
                     /listShort="S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    910282..910301
                     /Source="Nicolas_upshift_promotors"
                     /id="U651"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig="0.995004995004995"
                     /xcortree=2031
                     /SigmaFactorBS="tcggaccatgtcatatccccctaggttcgagatcaaaAAGTT
                     GCGtcttttcagatgaAGACGTAAGGTTAGTATATGgagaacaccacgtaataaagcg
                     t"
                     /listShort="S291, yfhJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       910284..910356
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_928316_928388"
                     /HighExp="dia5, LPhT, Diami, dia15, Etha, T0.30H, H2O2,
                     LBGstat, BC, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.995, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S291"
     upshifts        910284
                     /Source="Nicolas_upshifts"
                     /id="U651"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig="0.995004995004995"
                     /xcortree=2031
                     /SigmaFactorBS="tcggaccatgtcatatccccctaggttcgagatcaaaAAGTT
                     GCGtcttttcagatgaAGACGTAAGGTTAGTATATGgagaacaccacgtaataaagcg
                     t"
                     /listShort="S291, yfhJ"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(910291..910302)
                     /Source="Nicolas_upshift_promotors"
                     /id="U652"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=867
                     /SigmaFactorBS="ttcatgtgtgcagtctcctttcttcaggaaaaaaataaCGCT
                     TTAttacgtggtgttctCCATATACTAACcttacgtcttcatctgaaaagacgcaact
                     t"
                     /listShort="sspK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(910301)
                     /Source="Nicolas_upshifts"
                     /id="U652"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=867
                     /SigmaFactorBS="ttcatgtgtgcagtctcctttcttcaggaaaaaaataaCGCT
                     TTAttacgtggtgttctCCATATACTAACcttacgtcttcatctgaaaagacgcaact
                     t"
                     /listShort="sspK"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(910317..910323)
                     /Source="Nicolas_upshift_promotors"
                     /id="U652"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=867
                     /SigmaFactorBS="ttcatgtgtgcagtctcctttcttcaggaaaaaaataaCGCT
                     TTAttacgtggtgttctCCATATACTAACcttacgtcttcatctgaaaagacgcaact
                     t"
                     /listShort="sspK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             910357..910626
                     /gene="yfhJ"
                     /locus_tag="BSU_08560"
                     /old_locus_tag="BSU08560"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388736.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08560"
                     /db_xref="EnsemblGenomes-Tr:CAB12684"
                     /db_xref="InterPro:IPR026952"
                     /db_xref="SubtiList:BG12885"
                     /db_xref="UniProtKB/Swiss-Prot:O31578"
                     /translation="MNMYIEKLTNLLLEKNEMISYIQAKTWVELLWSDFEATYAKAGH
                     AYQGEKMTEKIVTQWIENYGGQLHLFQSSRNDVNDYLNQSRGLLH*"
     gene            910357..910626
                     /gene="yfhJ"
                     /locus_tag="BSU_08560"
                     /old_locus_tag="BSU08560"
     downshifts      910615
                     /Source="Nicolas_upshifts"
                     /id="D426"
                     /incds=0
                     /nref=62
                     /ntot=233
                     /MaxReadThrough="2.9538"
                     /MaxDrop="5.3621"
                     /score="19.3423239"
                     /energy="-10.6"
                     /TU="NA"
                     /idTUdmin="U650"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    910704..910710
                     /Source="Nicolas_upshift_promotors"
                     /id="U653"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=223
                     /SigmaFactorBS="ttaaaattaccttaacaggaagaaatcataaacaaaacaTGT
                     TTCAccagcctgtcaatcaGGGAATACCACTTATATCTtgtcaaaatgcgaggaggag
                     c"
                     /listShort="yfhK, S292, yfhL, yfhM, S293, S294, csbB,
                     S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        910725
                     /Source="Nicolas_upshifts"
                     /id="U653"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=223
                     /SigmaFactorBS="ttaaaattaccttaacaggaagaaatcataaacaaaacaTGT
                     TTCAccagcctgtcaatcaGGGAATACCACTTATATCTtgtcaaaatgcgaggaggag
                     c"
                     /listShort="yfhK, S292, yfhL, yfhM, S293, S294, csbB,
                     S295, yfhO"
                     /GFF_Attribute="listLong"
     promotor_-10    910726..910744
                     /Source="Nicolas_upshift_promotors"
                     /id="U653"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=223
                     /SigmaFactorBS="ttaaaattaccttaacaggaagaaatcataaacaaaacaTGT
                     TTCAccagcctgtcaatcaGGGAATACCACTTATATCTtgtcaaaatgcgaggaggag
                     c"
                     /listShort="yfhK, S292, yfhL, yfhM, S293, S294, csbB,
                     S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             910771..911289
                     /gene="yfhK"
                     /locus_tag="BSU_08570"
                     /old_locus_tag="BSU08570"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_388737.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08570"
                     /db_xref="EnsemblGenomes-Tr:CAB12685"
                     /db_xref="InterPro:IPR003646"
                     /db_xref="SubtiList:BG12886"
                     /db_xref="UniProtKB/Swiss-Prot:O31579"
                     /translation="MKKKQVMLALTAAAGLGLTALHSAPAAKAAPLHDISVSMPSSDT
                     YIIKAGKLNVRTEPNHEGDILGTVSSEQKVKVDRFVNADWAQIHFKGKKAYISTHFLM
                     KTASQAKTTKQTAFYTPTPENGKAKQLSSGTEVTILGWGFSENGGFDFTWAFVDYGGV
                     KGYIHTKDLQMR*"
     gene            910771..911289
                     /gene="yfhK"
                     /locus_tag="BSU_08570"
                     /old_locus_tag="BSU08570"
     S_feature       911290..911357
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_929322_929389"
                     /HighExp="Etha, Sw, Salt, M9-stat, B60, B36, Gly, LoTm,
                     BC, LPhT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S292"
     promotor_-35    911325..911334
                     /Source="Nicolas_upshift_promotors"
                     /id="U654"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1692
                     /SigmaFactorBS="ccgaggcttgtctttttgcctatgcaTGAAACATTTcttctt
                     tctgcACGTAACAATGAGAAAggagatgatgatatgacgggtttagtcggcggagggc
                     t"
                     /listShort="yfhL, yfhM"
                     /listLong="S293, S294, csbB, S295, yfhO"
                     /label="promotor_-35"
     promotor_-10    911346..911361
                     /Source="Nicolas_upshift_promotors"
                     /id="U654"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1692
                     /SigmaFactorBS="ccgaggcttgtctttttgcctatgcaTGAAACATTTcttctt
                     tctgcACGTAACAATGAGAAAggagatgatgatatgacgggtttagtcggcggagggc
                     t"
                     /listShort="yfhL, yfhM"
                     /listLong="S293, S294, csbB, S295, yfhO"
                     /label="promotor_-10"
     upshifts        911359
                     /Source="Nicolas_upshifts"
                     /id="U654"
                     /multdbtbs="SigW"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1692
                     /SigmaFactorBS="ccgaggcttgtctttttgcctatgcaTGAAACATTTcttctt
                     tctgcACGTAACAATGAGAAAggagatgatgatatgacgggtttagtcggcggagggc
                     t"
                     /listShort="yfhL, yfhM"
                     /listLong="S293, S294, csbB, S295, yfhO"
     CDS             911374..911706
                     /gene="spdL"
                     /locus_tag="BSU_08580"
                     /old_locus_tag="BSU08580"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:16629676, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16629676, 22720735;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="factor for peptide SdpC immunity"
                     /protein_id="NP_388738.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08580"
                     /db_xref="EnsemblGenomes-Tr:CAB12686"
                     /db_xref="GOA:O31580"
                     /db_xref="InterPro:IPR025962"
                     /db_xref="SubtiList:BG12887"
                     /db_xref="UniProtKB/Swiss-Prot:O31580"
                     /translation="MTGLVGGGLMIIAGILIKLFPPKSINSVYGYRTRRSMSDQRLWN
                     EANRYSASLMILSGLVIAGMGLLLGSNLFILQLILLIAACVITFMLTEKRLKIMTHSQ
                     GGDRSGRS*"
     gene            911374..911706
                     /gene="spdL"
                     /locus_tag="BSU_08580"
                     /old_locus_tag="BSU08580"
     CDS             911693..912553
                     /gene="ephM"
                     /locus_tag="BSU_08590"
                     /old_locus_tag="BSU08590"
                     /EC_number="3.3.2.10"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16597997, 20941576"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16597997, 20941576;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="stress induced epoxide hydrolase"
                     /protein_id="NP_388739.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08590"
                     /db_xref="EnsemblGenomes-Tr:CAB12687"
                     /db_xref="GOA:O31581"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR000639"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12888"
                     /db_xref="UniProtKB/Swiss-Prot:O31581"
                     /translation="MDGVKCQFVNTNGITLHVAAAGREDGPLIVLLHGFPEFWYGWKN
                     QIKPLVDAGYRVIAPDQRGYNLSDKPEGIDSYRIDTLRDDIIGLITQFTDEKAIVIGH
                     DWGGAVAWHLASTRPEYLEKLIAINIPHPHVMKTVTPLYPPQWLKSSYIAYFQLPDIP
                     EASLRENDYDTLDKAIGLSDRPALFTSEDVSRYKEAWKQPGALTAMLNWYRALRKGSL
                     AEKPSYETVPYRMIWGMEDRFLSRKLAKETERHCPNGHLIFVDEASHWINHEKPAIVN
                     QLILEYLKNQ*"
     gene            911693..912553
                     /gene="ephM"
                     /locus_tag="BSU_08590"
                     /old_locus_tag="BSU08590"
     downshifts      912551
                     /Source="Nicolas_upshifts"
                     /id="D427"
                     /incds=0
                     /nref=27
                     /ntot=191
                     /MaxReadThrough="5.0793"
                     /MaxDrop="4.1326"
                     /score="3.7712168"
                     /energy="-8.4"
                     /TU="U653,U654"
                     /idTUdmin="U654"
                     /TUdmin="-132"
                     /isTUend="FALSE"
     promotor_-35    912611..912617
                     /Source="Nicolas_upshift_promotors"
                     /id="U655"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=945
                     /SigmaFactorBS="tcataatggcagactttttctgtgcgttttttTTCATAGtct
                     gttttaaacaTGACAAAATAACattaaaaatcatgaatgtcaccataaaattgtaaca
                     a"
                     /listShort="S293, S294, csbB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    912631..912642
                     /Source="Nicolas_upshift_promotors"
                     /id="U655"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=945
                     /SigmaFactorBS="tcataatggcagactttttctgtgcgttttttTTCATAGtct
                     gttttaaacaTGACAAAATAACattaaaaatcatgaatgtcaccataaaattgtaaca
                     a"
                     /listShort="S293, S294, csbB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       912639..912703
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_930671_930735"
                     /HighExp="Etha, S5, M9-stat, T0.30H, Sw, T-0.40H, B60, S8,
                     B36, T1.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigB"
                     /TUshortPSig="0.99, 1"
                     /TUlongSig="SigWXY"
                     /TUlongPSig=1
                     /label="S293"
     upshifts        912639
                     /Source="Nicolas_upshifts"
                     /id="U655"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=945
                     /SigmaFactorBS="tcataatggcagactttttctgtgcgttttttTTCATAGtct
                     gttttaaacaTGACAAAATAACattaaaaatcatgaatgtcaccataaaattgtaaca
                     a"
                     /listShort="S293, S294, csbB"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(912661..912680)
                     /Source="Nicolas_upshift_promotors"
                     /id="U656"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.446553446553447"
                     /psig="0.97902097902098"
                     /xcortree=2407
                     /SigmaFactorBS="caaatcttcagtaaggctattcctttttttaaagtCGtttaa
                     acctgtttTTTGTTACAATTTTATGGTGacattcatgatttttaatgttattttgtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(912670)
                     /Source="Nicolas_upshifts"
                     /id="U656"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.446553446553447"
                     /psig="0.97902097902098"
                     /xcortree=2407
                     /SigmaFactorBS="caaatcttcagtaaggctattcctttttttaaagtCGtttaa
                     acctgtttTTTGTTACAATTTTATGGTGacattcatgatttttaatgttattttgtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    912686..912692
                     /Source="Nicolas_upshift_promotors"
                     /id="U657"
                     /multdbtbs="SigB,SigX"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=124
                     /SigmaFactorBS="taaaaatcatgaatgtcaccataaaattgtaacaaaaaacaG
                     GTTTAAacgactttaaaaaaAGGAATAGCCTTACTGAAGatttgtgtaaaactcccct
                     a"
                     /listShort="S294, csbB, S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(912694..912695)
                     /Source="Nicolas_upshift_promotors"
                     /id="U656"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.446553446553447"
                     /psig="0.97902097902098"
                     /xcortree=2407
                     /SigmaFactorBS="caaatcttcagtaaggctattcctttttttaaagtCGtttaa
                     acctgtttTTTGTTACAATTTTATGGTGacattcatgatttttaatgttattttgtca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       912705..912785
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_930737_930817"
                     /HighExp="M9-stat, LBGexp, Lbexp, T0.30H, dia0, T1.30H,
                     T1.0H, LBGtran, Paraq, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigGF, SigB"
                     /TUshortPSig="1, 0.99, 1"
                     /TUlongSig="SigWXY"
                     /TUlongPSig=1
                     /label="S294"
     upshifts        912705
                     /Source="Nicolas_upshifts"
                     /id="U657"
                     /multdbtbs="SigB,SigX"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=124
                     /SigmaFactorBS="taaaaatcatgaatgtcaccataaaattgtaacaaaaaacaG
                     GTTTAAacgactttaaaaaaAGGAATAGCCTTACTGAAGatttgtgtaaaactcccct
                     a"
                     /listShort="S294, csbB, S295, yfhO"
                     /GFF_Attribute="listLong"
     promotor_-10    912707..912725
                     /Source="Nicolas_upshift_promotors"
                     /id="U657"
                     /multdbtbs="SigB,SigX"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=124
                     /SigmaFactorBS="taaaaatcatgaatgtcaccataaaattgtaacaaaaaacaG
                     GTTTAAacgactttaaaaaaAGGAATAGCCTTACTGAAGatttgtgtaaaactcccct
                     a"
                     /listShort="S294, csbB, S295, yfhO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             912786..913775
                     /gene="csbB"
                     /locus_tag="BSU_08600"
                     /old_locus_tag="BSU08600"
                     /EC_number="2.4.-.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8921856, 9636707,
                     23632331; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative bactoprenol glycosyl transferase,
                     phageorigin"
                     /protein_id="NP_388740.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08600"
                     /db_xref="EnsemblGenomes-Tr:CAB12688"
                     /db_xref="GOA:Q45539"
                     /db_xref="InterPro:IPR001173"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG11834"
                     /db_xref="UniProtKB/Swiss-Prot:Q45539"
                     /translation="MKQGLISIIIPSYNEGYNVKLIHESLKKEFKNIHYDYEIFFIND
                     GSVDDTLQQIKDLAATCSRVKYISFSRNFGKEAAILAGFEHVQGEAVIVMDADLQHPT
                     YLLKEFIKGYEEGYDQVIAQRNRKGDSFVRSLLSSMYYKFINKAVEVDLRDGVGDFRL
                     LSRQAVNALLKLSEGNRFSKGLFCWIGFDQKIVFYENVERKNGTSKWSFSSLFNYGMD
                     GVVSFNHKPLRLCFYTGIFILLLSIIYIIATFVKILTNGISVPGYFTIISAVLFLGGV
                     QLLSLGIIGEYIGRIYYETKKRPHYLIKEANIPNKDLPETNELKSMRRLTKMH*"
     gene            912786..913775
                     /gene="csbB"
                     /locus_tag="BSU_08600"
                     /old_locus_tag="BSU08600"
     upshifts        complement(912935)
                     /Source="Nicolas_upshifts"
                     /id="U658"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.712287712287712"
                     /psig="0.037962037962038"
                     /xcortree=125
                     /SigmaFactorBS="agaaaaagatatatattttacccggctgcaCGTCGctgccaa
                     gtctttgatCTGCTgaagcgtgtcatcaacacttccgtcgtttatgaagaatatttca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(912940..912944)
                     /Source="Nicolas_upshift_promotors"
                     /id="U658"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.712287712287712"
                     /psig="0.037962037962038"
                     /xcortree=125
                     /SigmaFactorBS="agaaaaagatatatattttacccggctgcaCGTCGctgccaa
                     gtctttgatCTGCTgaagcgtgtcatcaacacttccgtcgtttatgaagaatatttca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(912961..912965)
                     /Source="Nicolas_upshift_promotors"
                     /id="U658"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.712287712287712"
                     /psig="0.037962037962038"
                     /xcortree=125
                     /SigmaFactorBS="agaaaaagatatatattttacccggctgcaCGTCGctgccaa
                     gtctttgatCTGCTgaagcgtgtcatcaacacttccgtcgtttatgaagaatatttca
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       913776..913846
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_931808_931878"
                     /HighExp="LPhT, Heat, Etha, LBGexp, M9-stat, LBGtran,
                     Lbexp, Sw, dia0, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigB"
                     /TUshortPSig="1, 1"
                     /TUlongSig="SigWXY"
                     /TUlongPSig=1
                     /label="S295"
     CDS             913847..916432
                     /gene="yfhO"
                     /locus_tag="BSU_08610"
                     /old_locus_tag="BSU08610"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23632331; Product type
                     m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein"
                     /protein_id="NP_388741.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08610"
                     /db_xref="EnsemblGenomes-Tr:CAB12689"
                     /db_xref="GOA:O31582"
                     /db_xref="InterPro:IPR018580"
                     /db_xref="SubtiList:BG12889"
                     /db_xref="UniProtKB/Swiss-Prot:O31582"
                     /translation="MKRKHIMIYAASLLVSVLAHAFFVKEWAEGRYMTGPGDGLAQMI
                     VFKKLLFDQYTHGNFFYNYSFGLGGGTFSQLGYYFSASFLFLAVSAAVWLLQAVQLIG
                     ETDTLFWAESAVFISIFKLSLIIFTSASVFHYLLKHRAASFTGAVLYGVSIIYFRHEA
                     YWEFFTDTMVWLPLLVLGAEKIIRERRPAWFIVACSLTLINNFYFAYINLIFIGIYVL
                     FRWLIRLEPHEEKRWIQIRLFLVSGFISFGISAAAFVPVVYGFLNNLRPPYSQKIEWL
                     NFDDNILFSSRIIIVPAAFLLFLFIISFYKNRVFRLFAGLSLLFILFHFSPYAASVFN
                     GFSAPQNRFEYVLAFTIAGAAAAGLSQLSELKRKELLPAAAVVLLLYLYHIQRYKLDI
                     WKPANESILLLLLMTIAALFAAAFAKKRAKMAVYGIIILSSLFVANSYQKYALSEGGD
                     LDSVTKEYLTSEEYRGRESSELIRRLQKEDDDPLMRIDWMNGVRNNTPIIYGFNGFSA
                     YSSILNKDLLAFYWNDLSIDMGRESVSRYASLGDRANLYSLLYGKYYMTEKTNEASVP
                     YGFKKHLETEHYAVYENQYMLPFVKTADAIYSESELDRLPALAKEQAMLKGIILKDPS
                     GKTEQTPKPSNLITKSDITAKQAQYQNGLLTVTGENGGELIITPKQPSSAPGDYYVSF
                     YLKSKAKDKGFTLKVNDYVTTRKSNKSIYKTGVNNITVRVPKSGHISINLPKGTYELR
                     NIALYEENYQTLKNAVMQNKTEKADKLNWNKNRLTFSYHLSKDQYIMLPIPYEKGWEL
                     KINGKTQKIEKADYAFIGFKAQKGDNHIELTYYPPYFKISAIISLVSLLLAVFYIRRK
                     KPGSI*"
     gene            913847..916432
                     /gene="yfhO"
                     /locus_tag="BSU_08610"
                     /old_locus_tag="BSU08610"
     downshifts      916401
                     /Source="Nicolas_upshifts"
                     /id="D428"
                     /incds=0
                     /nref=63
                     /ntot=217
                     /MaxReadThrough="2.13267"
                     /MaxDrop="4.17784"
                     /score="2.41489488"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U657"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(916425..917408)
                     /gene="yfhP"
                     /locus_tag="BSU_08620"
                     /old_locus_tag="BSU08620"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10463184, 10524235,
                     15849754, 16850406, 24237659; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane hydrolase"
                     /protein_id="NP_388742.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08620"
                     /db_xref="EnsemblGenomes-Tr:CAB12690"
                     /db_xref="GOA:O31583"
                     /db_xref="InterPro:IPR007404"
                     /db_xref="SubtiList:BG12890"
                     /db_xref="UniProtKB/Swiss-Prot:O31583"
                     /translation="MDTGTHVVMGIALGGIATLDPVVGSDPAMAHAVMIATLAGSQAP
                     DIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSVIIPAILYLFYPQADFLHLWLWTLLA
                     VVLHVFVDIFNAYGTQAIRPFSKKWVALGLINTFDPFIFISHLAAIAIWYAGGSPGIT
                     FLSLYIILVGYYLVRLIMQLRIKRKLHEMIHDEIESIIISPTMKFRQWRIAVTTAHAF
                     YVGRSMEGHVVILDTFNRVPVPETDVMHAAKQDDNIAAFLSFSPVYRWEVDTFKDHYE
                     VRFIDLRYRSKGHYPFVAIVHIGHDLTIRSSYTGWIFSEEKLQKKLKLGSI*"
     gene            complement(916425..917408)
                     /gene="yfhP"
                     /locus_tag="BSU_08620"
                     /old_locus_tag="BSU08620"
     downshifts      complement(916459)
                     /Source="Nicolas_upshifts"
                     /id="D429"
                     /incds=0
                     /nref=28
                     /ntot=200
                     /MaxReadThrough="2.65266"
                     /MaxDrop="4.43244"
                     /score="25.5564412"
                     /energy="-17.5"
                     /TU="NA"
                     /idTUdmin="U661"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     promotor_-35    916882..916891
                     /Source="Nicolas_upshift_promotors"
                     /id="U659"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1381
                     /SigmaFactorBS="atgaagcttccgtttaattctcagctgcatgatcAGGCGCAC
                     CAagtagtagcctaCCAATATGATATATAAGCTGagaaacgtgatgccgggactcccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    916904..916923
                     /Source="Nicolas_upshift_promotors"
                     /id="U659"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1381
                     /SigmaFactorBS="atgaagcttccgtttaattctcagctgcatgatcAGGCGCAC
                     CAagtagtagcctaCCAATATGATATATAAGCTGagaaacgtgatgccgggactcccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        916908
                     /Source="Nicolas_upshifts"
                     /id="U659"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1381
                     /SigmaFactorBS="atgaagcttccgtttaattctcagctgcatgatcAGGCGCAC
                     CAagtagtagcctaCCAATATGATATATAAGCTGagaaacgtgatgccgggactcccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     S_feature       complement(917409..917556)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_935441_935588_c"
                     /HighExp="Diami, dia15, M9-stat, dia5, Etha, H2O2, S6,
                     Salt, Lbtran, LBGstat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S296"
     promotor_-35    917513..917517
                     /Source="Nicolas_upshift_promotors"
                     /id="U660"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.998001998001998"
                     /xcortree=2674
                     /SigmaFactorBS="tttaaactgattcaatcgttctcatatgtttccGCTTTttct
                     ttattactattTAATGTAACATATTATCGTActgtgcccttagtgtacaacaaaaaac
                     a"
                     /listShort="S297, yfhQ, S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    917533..917552
                     /Source="Nicolas_upshift_promotors"
                     /id="U660"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.998001998001998"
                     /xcortree=2674
                     /SigmaFactorBS="tttaaactgattcaatcgttctcatatgtttccGCTTTttct
                     ttattactattTAATGTAACATATTATCGTActgtgcccttagtgtacaacaaaaaac
                     a"
                     /listShort="S297, yfhQ, S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        917540
                     /Source="Nicolas_upshifts"
                     /id="U660"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.998001998001998"
                     /xcortree=2674
                     /SigmaFactorBS="tttaaactgattcaatcgttctcatatgtttccGCTTTttct
                     ttattactattTAATGTAACATATTATCGTActgtgcccttagtgtacaacaaaaaac
                     a"
                     /listShort="S297, yfhQ, S298, fabL, sspE"
                     /GFF_Attribute="listLong"
     S_feature       917546..917623
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_935578_935655"
                     /HighExp="H2O2, G150, G180, LBGstat, dia15, Diami, Oxctl,
                     Paraq, G135, dia0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S297"
     promotor_-10    complement(917554..917573)
                     /Source="Nicolas_upshift_promotors"
                     /id="U661"
                     /multdbtbs="SigK,SigK"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig="0.997002997002997"
                     /xcortree=643
                     /SigmaFactorBS="tctccccagtctttcgcgcccCGCTTTTCtttagactgtttt
                     tTGTTGTACACTAAGGGCACAgtacgataatatgttacattaaatagtaataaagaaa
                     a"
                     /listShort="S296, yfhP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(917556)
                     /Source="Nicolas_upshifts"
                     /id="U661"
                     /multdbtbs="SigK,SigK"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig="0.997002997002997"
                     /xcortree=643
                     /SigmaFactorBS="tctccccagtctttcgcgcccCGCTTTTCtttagactgtttt
                     tTGTTGTACACTAAGGGCACAgtacgataatatgttacattaaatagtaataaagaaa
                     a"
                     /listShort="S296, yfhP"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(917588..917595)
                     /Source="Nicolas_upshift_promotors"
                     /id="U661"
                     /multdbtbs="SigK,SigK"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig="0.997002997002997"
                     /xcortree=643
                     /SigmaFactorBS="tctccccagtctttcgcgcccCGCTTTTCtttagactgtttt
                     tTGTTGTACACTAAGGGCACAgtacgataatatgttacattaaatagtaataaagaaa
                     a"
                     /listShort="S296, yfhP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             917624..918733
                     /gene="mutY"
                     /locus_tag="BSU_08630"
                     /old_locus_tag="BSU08630"
                     /EC_number="3.2.2.-"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:10463184, 20971907, 21954439, 27399782"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10463184, 20971907,
                     21954439, 27399782; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase or
                     DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="NP_388743.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08630"
                     /db_xref="EnsemblGenomes-Tr:CAB12691"
                     /db_xref="GOA:O31584"
                     /db_xref="InterPro:IPR003265"
                     /db_xref="InterPro:IPR003651"
                     /db_xref="InterPro:IPR005760"
                     /db_xref="InterPro:IPR011257"
                     /db_xref="InterPro:IPR015797"
                     /db_xref="InterPro:IPR023170"
                     /db_xref="InterPro:IPR029119"
                     /db_xref="SubtiList:BG12891"
                     /db_xref="UniProtKB/Swiss-Prot:O31584"
                     /translation="MNVLEDKLKQKDIQQFRDDLISWFEREQRVLPWREDQDPYKVWV
                     SEVMLQQTRVETVIPYFLRFVEQFPTVEALADADEEKVLKAWEGLGYYSRVRNLQSAV
                     KEVKQEYGGIVPPDEKDFGGLKGVGPYTKGAVLSIAYNKPIPAVDGNVMRVMSRILSI
                     WDDIAKPKTRTIFEDAIRAFISKEKPSEFNQGLMELGALICTPKSPSCLLCPVQQHCS
                     AFEEGTERELPVKSKKKKPGIKTMAAIVLTDEDGQVYIHKRPSKGLLANLWEFPNLET
                     QKGIKTEREQLIAFLENEYGIQADISDLQGVVEHVFTHLVWNISVFFGKVKQVSDTSK
                     LKKVTKEELEQFAFPVSHQKIWKMAGEAAAISAAP*"
     gene            917624..918733
                     /gene="mutY"
                     /locus_tag="BSU_08630"
                     /old_locus_tag="BSU08630"
     promotor_-35    918570..918574
                     /Source="Nicolas_upshift_promotors"
                     /id="U662"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig="0.997002997002997"
                     /xcortree=2563
                     /SigmaFactorBS="gtagtcgagcatgttttcacccacctggTATGGaatatttca
                     gtgtttTTCGGTAAAGTAAAACAAGTgtcggataccagcaagctgaaaaaagtaacga
                     a"
                     /listShort="S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    918590..918609
                     /Source="Nicolas_upshift_promotors"
                     /id="U662"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig="0.997002997002997"
                     /xcortree=2563
                     /SigmaFactorBS="gtagtcgagcatgttttcacccacctggTATGGaatatttca
                     gtgtttTTCGGTAAAGTAAAACAAGTgtcggataccagcaagctgaaaaaagtaacga
                     a"
                     /listShort="S298, fabL, sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        918602
                     /Source="Nicolas_upshifts"
                     /id="U662"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig="0.997002997002997"
                     /xcortree=2563
                     /SigmaFactorBS="gtagtcgagcatgttttcacccacctggTATGGaatatttca
                     gtgtttTTCGGTAAAGTAAAACAAGTgtcggataccagcaagctgaaaaaagtaacga
                     a"
                     /listShort="S298, fabL, sspE"
                     /GFF_Attribute="listLong"
     S_feature       918734..919046
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_936766_937078"
                     /HighExp="H2O2, G150, dia15, G135, G180, Oxctl, Paraq,
                     dia0, LBGexp, Lbexp"
                     /AntisenseName="yfhS"
                     /AntisenseCor="-0.72611377663365595"
                     /AntisenseRegPval="-44.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S298"
     CDS             complement(918741..918965)
                     /gene="yfhS"
                     /locus_tag="BSU_08640"
                     /old_locus_tag="BSU08640"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 10463184"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein related to sporulation"
                     /protein_id="NP_388744.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08640"
                     /db_xref="EnsemblGenomes-Tr:CAB12692"
                     /db_xref="SubtiList:BG12892"
                     /db_xref="UniProtKB/Swiss-Prot:O31585"
                     /translation="MYVGRDMSELNMVSKKDWKNSELAYFHHAFQQIMPYLNEEGQSK
                     YRELTQEIEARGGMKRNEADYSHGTRVSYD*"
     gene            complement(918741..918965)
                     /gene="yfhS"
                     /locus_tag="BSU_08640"
                     /old_locus_tag="BSU08640"
     promotor_-10    complement(918995..919006)
                     /Source="Nicolas_upshift_promotors"
                     /id="U663"
                     /multdbtbs="SigE"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=858
                     /SigmaFactorBS="ttttgttccatttttcctcatctccttgtagCGTATAGttct
                     tttatttccACAAACAATAATggcaagaactttaaagggggtcttctgttatgtatgt
                     c"
                     /listShort="yfhS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(918997)
                     /Source="Nicolas_upshifts"
                     /id="U663"
                     /multdbtbs="SigE"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=858
                     /SigmaFactorBS="ttttgttccatttttcctcatctccttgtagCGTATAGttct
                     tttatttccACAAACAATAATggcaagaactttaaagggggtcttctgttatgtatgt
                     c"
                     /listShort="yfhS"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(919020..919026)
                     /Source="Nicolas_upshift_promotors"
                     /id="U663"
                     /multdbtbs="SigE"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=858
                     /SigmaFactorBS="ttttgttccatttttcctcatctccttgtagCGTATAGttct
                     tttatttccACAAACAATAATggcaagaactttaaagggggtcttctgttatgtatgt
                     c"
                     /listShort="yfhS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             919047..919799
                     /gene="fabL"
                     /locus_tag="BSU_08650"
                     /old_locus_tag="BSU08650"
                     /EC_number="1.3.1.10"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11007778, 12440970, 17329825, 21185310"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11007778, 12440970,
                     17329825, 21185310; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-acyl carrier protein reductase III"
                     /protein_id="NP_388745.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08650"
                     /db_xref="EnsemblGenomes-Tr:CAB12693"
                     /db_xref="GOA:P71079"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:3OIC"
                     /db_xref="PDB:3OID"
                     /db_xref="SubtiList:BG12221"
                     /db_xref="UniProtKB/Swiss-Prot:P71079"
                     /translation="MEQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALE
                     TAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELE
                     ETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAA
                     LEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIK
                     DMVDTVEFLVSSKADMIRGQTIIVDGGRSLLV*"
     gene            919047..919799
                     /gene="fabL"
                     /locus_tag="BSU_08650"
                     /old_locus_tag="BSU08650"
     promotor_-35    919816..919822
                     /Source="Nicolas_upshift_promotors"
                     /id="U664"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=800
                     /SigmaFactorBS="cggacgctcactgctcgtttaaaaatttttaaaaaagaGGAA
                     TAGctatacgatcacctGCACATTCTAATgaccgtggaggtgataacaatggctaact
                     c"
                     /listShort="sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    919837..919848
                     /Source="Nicolas_upshift_promotors"
                     /id="U664"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=800
                     /SigmaFactorBS="cggacgctcactgctcgtttaaaaatttttaaaaaagaGGAA
                     TAGctatacgatcacctGCACATTCTAATgaccgtggaggtgataacaatggctaact
                     c"
                     /listShort="sspE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        919838
                     /Source="Nicolas_upshifts"
                     /id="U664"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.988011988011988"
                     /psig="0.988011988011988"
                     /xcortree=800
                     /SigmaFactorBS="cggacgctcactgctcgtttaaaaatttttaaaaaagaGGAA
                     TAGctatacgatcacctGCACATTCTAATgaccgtggaggtgataacaatggctaact
                     c"
                     /listShort="sspE"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(919845..919859)
                     /Source="Nicolas_upshift_promotors"
                     /id="U665"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.841158841158841"
                     /psig="0.022977022977023"
                     /xcortree=711
                     /SigmaFactorBS="tggttttgttttctaacttgttgagcgtttgttttgctgaag
                     ttatttgagttaGCCATtgttatcaCCTCCACGGTCATTAgaatgtgcaggtgatcgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(919866)
                     /Source="Nicolas_upshifts"
                     /id="U665"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.841158841158841"
                     /psig="0.022977022977023"
                     /xcortree=711
                     /SigmaFactorBS="tggttttgttttctaacttgttgagcgtttgttttgctgaag
                     ttatttgagttaGCCATtgttatcaCCTCCACGGTCATTAgaatgtgcaggtgatcgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(919868..919872)
                     /Source="Nicolas_upshift_promotors"
                     /id="U665"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.841158841158841"
                     /psig="0.022977022977023"
                     /xcortree=711
                     /SigmaFactorBS="tggttttgttttctaacttgttgagcgtttgttttgctgaag
                     ttatttgagttaGCCATtgttatcaCCTCCACGGTCATTAgaatgtgcaggtgatcgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             919868..920122
                     /gene="sspE"
                     /locus_tag="BSU_08660"
                     /old_locus_tag="BSU08660"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:1744043, 7592342, 9540829, 19542328, 23314362"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1744043, 7592342,
                     9540829, 19542328, 23314362; Product type cp: cell
                     process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein (gamma-type
                     SASP)"
                     /protein_id="NP_388746.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08660"
                     /db_xref="EnsemblGenomes-Tr:CAB12694"
                     /db_xref="GOA:P07784"
                     /db_xref="InterPro:IPR006341"
                     /db_xref="SubtiList:BG10789"
                     /db_xref="UniProtKB/Swiss-Prot:P07784"
                     /translation="MANSNNFSKTNAQQVRKQNQQSAAGQGQFGTEFASETNAQQVRK
                     QNQQSAGQQGQFGTEFASETDAQQVRQQNQSAEQNKQQNS*"
     gene            919868..920122
                     /gene="sspE"
                     /locus_tag="BSU_08660"
                     /old_locus_tag="BSU08660"
     downshifts      920120
                     /Source="Nicolas_upshifts"
                     /id="D430"
                     /incds=0
                     /nref=261
                     /ntot=269
                     /MaxReadThrough="1.59207"
                     /MaxDrop="8.74804"
                     /score="9.25353719"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U660"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(920145)
                     /Source="Nicolas_upshifts"
                     /id="D431"
                     /incds=0
                     /nref=3
                     /ntot=21
                     /MaxReadThrough="1.21036"
                     /MaxDrop="5.14076"
                     /score="-9.78320441"
                     /energy="-7.1"
                     /TU="NA"
                     /idTUdmin="U663"
                     /TUdmin="-1687"
                     /isTUend="FALSE"
     CDS             920211..920555
                     /gene="ygaB"
                     /locus_tag="BSU_08670"
                     /old_locus_tag="BSU08670"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388747.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08670"
                     /db_xref="EnsemblGenomes-Tr:CAB12695"
                     /db_xref="InterPro:IPR025572"
                     /db_xref="SubtiList:BG12222"
                     /db_xref="UniProtKB/Swiss-Prot:P71080"
                     /translation="MSQRVCFMEIEMIKGGNVYTFIRLKEEPMTEFEKLVSEQMKTMD
                     KLLDLQSELDRCKQIEAELRHLERDARLRGIQAEIAVKRKHLADIQDMFQKQTEQVIR
                     SYRSSEKPSSFV*"
     gene            920211..920555
                     /gene="ygaB"
                     /locus_tag="BSU_08670"
                     /old_locus_tag="BSU08670"
     promotor_-35    920218..920226
                     /Source="Nicolas_upshift_promotors"
                     /id="U666"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=444
                     /SigmaFactorBS="aaaaacgacaaaacttgtggaaggtctacagaatgagtcAAA
                     GGGTTTgctttatggaGATCGAAATGATTAAAGGAggaaatgtttatactttcatcag
                     g"
                     /listShort="ygaB, S299, ygaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    920237..920255
                     /Source="Nicolas_upshift_promotors"
                     /id="U666"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=444
                     /SigmaFactorBS="aaaaacgacaaaacttgtggaaggtctacagaatgagtcAAA
                     GGGTTTgctttatggaGATCGAAATGATTAAAGGAggaaatgtttatactttcatcag
                     g"
                     /listShort="ygaB, S299, ygaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        920239
                     /Source="Nicolas_upshifts"
                     /id="U666"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=444
                     /SigmaFactorBS="aaaaacgacaaaacttgtggaaggtctacagaatgagtcAAA
                     GGGTTTgctttatggaGATCGAAATGATTAAAGGAggaaatgtttatactttcatcag
                     g"
                     /listShort="ygaB, S299, ygaC"
                     /GFF_Attribute="listLong"
     downshifts      920538
                     /Source="Nicolas_upshifts"
                     /id="D432"
                     /incds=0
                     /nref=1
                     /ntot=27
                     /MaxReadThrough="4.84572"
                     /MaxDrop="3.29993"
                     /score="13.9694142"
                     /energy="-11.5"
                     /TU="U666"
                     /idTUdmin="U660"
                     /TUdmin=418
                     /isTUend="FALSE"
     promotor_-35    920594..920601
                     /Source="Nicolas_upshift_promotors"
                     /id="U667"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig=1
                     /xcortree=2074
                     /SigmaFactorBS="tgtgccattccccggccggaatggctctttTATTTTCAtttt
                     tcaatttgtAACGTTATAATAGGTAAAAGacgttgtcggtaagcaaatttggacatac
                     t"
                     /listShort="S299, ygaC, ygaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    920615..920634
                     /Source="Nicolas_upshift_promotors"
                     /id="U667"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig=1
                     /xcortree=2074
                     /SigmaFactorBS="tgtgccattccccggccggaatggctctttTATTTTCAtttt
                     tcaatttgtAACGTTATAATAGGTAAAAGacgttgtcggtaagcaaatttggacatac
                     t"
                     /listShort="S299, ygaC, ygaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       920624..920698
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_938656_938730"
                     /HighExp="Etha, dia15, dia5, Diami, Salt, H2O2, BC, T5.0H,
                     Cold, C90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigH"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S299"
     upshifts        920624
                     /Source="Nicolas_upshifts"
                     /id="U667"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.641358641358641"
                     /psig=1
                     /xcortree=2074
                     /SigmaFactorBS="tgtgccattccccggccggaatggctctttTATTTTCAtttt
                     tcaatttgtAACGTTATAATAGGTAAAAGacgttgtcggtaagcaaatttggacatac
                     t"
                     /listShort="S299, ygaC, ygaD"
                     /GFF_Attribute="listLong"
     CDS             920699..921229
                     /gene="ygaC"
                     /locus_tag="BSU_08680"
                     /old_locus_tag="BSU08680"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 19383706, 22333191;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA binding factor"
                     /protein_id="NP_388748.3"
                     /db_xref="EnsemblGenomes-Gn:BSU08680"
                     /db_xref="EnsemblGenomes-Tr:CAB12696"
                     /db_xref="InterPro:IPR007295"
                     /db_xref="InterPro:IPR016882"
                     /db_xref="InterPro:IPR035930"
                     /db_xref="SubtiList:BG12223"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Z1"
                     /translation="MGYPKEGETIQIHSYKHNGLIHRIWNETTILKSTEMCVIGANDR
                     TMVTESDGRTWITREPAICYFHARQWFNVIGMLREDGVHYYCNISSPFAYDGEAIKYI
                     DYDLDVKVFPDMTYNILDEDEYDDHRKAMNYPKEIDSILRDYLNTLLHWIHQRQGPFA
                     PEFVDMWYERYLRYTK*"
     gene            920699..921229
                     /gene="ygaC"
                     /locus_tag="BSU_08680"
                     /old_locus_tag="BSU08680"
     downshifts      921220
                     /Source="Nicolas_upshifts"
                     /id="D433"
                     /incds=0
                     /nref=8
                     /ntot=135
                     /MaxReadThrough="6.10669"
                     /MaxDrop="3.97335"
                     /score="-5.22328881"
                     /energy="-7"
                     /TU="U667"
                     /idTUdmin="U666"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             921317..923059
                     /gene="ygaD"
                     /locus_tag="BSU_08690"
                     /old_locus_tag="BSU08690"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388749.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08690"
                     /db_xref="EnsemblGenomes-Tr:CAB12697"
                     /db_xref="GOA:P71082"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG12224"
                     /db_xref="UniProtKB/Swiss-Prot:P71082"
                     /translation="MGVMKRYMQFVKPYKKQIFVTVLIGIVKFSIPLALPLLLKYVVD
                     DIIQGGGTASDKTTSLFTIMAIMFALFLILRPPVEYYRQYFAQWTASKVLYDIRAKLF
                     DHIQKLSLRFYANTRTGEVISRVINDVEQTKDFVITGLMNIWLDMLTILIVISIMLTL
                     DVKLTLISIVLFPLYGISVKYFYGRLRKLTRERSQALAQVQGHLHERIQGMPVIRSFA
                     IEDHEQAQFNEKNGHFLDKAIRHTNWNAKTFAVVNTITDLAPLIVIACAGYFVINGPL
                     TVGTMVAFVGYIDRMYNPVRRLINSSTTLTQSIASMDRVFEFIDEPYELTDKPNAIKA
                     DQIRGGVEFQNVSFQYEKDKENILHDVSLKVNRGETVALVGMSGGGKSTLVSLIPRFY
                     DVTSGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIAIGKPDATLEEIIE
                     AAKAANAHEFIMSFPEGYETRVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSA
                     LDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEIGTHDELMDY
                     ESQYKHLFTIQNLN*"
     gene            921317..923059
                     /gene="ygaD"
                     /locus_tag="BSU_08690"
                     /old_locus_tag="BSU08690"
     downshifts      923046
                     /Source="Nicolas_upshifts"
                     /id="D434"
                     /incds=0
                     /nref=87
                     /ntot=233
                     /MaxReadThrough="2.54676"
                     /MaxDrop="5.20475"
                     /score="22.3853226"
                     /energy="-14.1"
                     /TU="NA"
                     /idTUdmin="U667"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(923136..924197)
                     /gene="ygaE"
                     /locus_tag="BSU_08700"
                     /old_locus_tag="BSU08700"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388750.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08700"
                     /db_xref="EnsemblGenomes-Tr:CAB12698"
                     /db_xref="GOA:P71083"
                     /db_xref="InterPro:IPR010343"
                     /db_xref="SubtiList:BG12225"
                     /db_xref="UniProtKB/Swiss-Prot:P71083"
                     /translation="MKLGARIFKTGIAITLALYLASWIGLPAPIFAGIAAIFAIQPSI
                     YRSFLIIIDQVQANIIGAVIATVFGLIFGPSPIMIGLTAVIVITIMLKLKIEHTISIA
                     LVTVIAILESAGDDFLMFALIRTSTVILGVLSSFIVNLVFLPPKYETKLIHNTVENTE
                     EIMKWIRLSMRQSTEHSILKEDIEKLKEKMIKLDQTYLLYKEERSYFKKTTYVKSRKL
                     VLFRQAIITANRALDTLKKLHRLENEIYHMPEEFQETLTEELDYLLYWHERILMRFVG
                     KIKPHDDAVEEGIRYKQLLTKSFLKNQQNTDEELIDYNMLNIMASAVEYREQLEHLET
                     LITSFQTYHPKDCEIETEE*"
     gene            complement(923136..924197)
                     /gene="ygaE"
                     /locus_tag="BSU_08700"
                     /old_locus_tag="BSU08700"
     downshifts      complement(923147)
                     /Source="Nicolas_upshifts"
                     /id="D435"
                     /incds=0
                     /nref=181
                     /ntot=254
                     /MaxReadThrough="1.1413"
                     /MaxDrop="7.13599"
                     /score="26.0617552"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U668"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     S_feature       complement(924198..924288)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_942230_942320_c"
                     /HighExp="G180, Oxctl, Paraq, C30, G150, LBGexp, LPhT, S4,
                     G135, S5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S300"
     promotor_-10    complement(924286..924305)
                     /Source="Nicolas_upshift_promotors"
                     /id="U668"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.502497502497502"
                     /psig="0.998001998001998"
                     /xcortree=2441
                     /SigmaFactorBS="aagattttggtctttttctagaaaaataGCTTGAATatttgt
                     atcgatccCTGTATATTACTTAATTGTTtagcaaataaactaaccgggaattttaagg
                     a"
                     /listShort="S300, ygaE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(924295)
                     /Source="Nicolas_upshifts"
                     /id="U668"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.502497502497502"
                     /psig="0.998001998001998"
                     /xcortree=2441
                     /SigmaFactorBS="aagattttggtctttttctagaaaaataGCTTGAATatttgt
                     atcgatccCTGTATATTACTTAATTGTTtagcaaataaactaaccgggaattttaagg
                     a"
                     /listShort="S300, ygaE"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(924320..924327)
                     /Source="Nicolas_upshift_promotors"
                     /id="U668"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.502497502497502"
                     /psig="0.998001998001998"
                     /xcortree=2441
                     /SigmaFactorBS="aagattttggtctttttctagaaaaataGCTTGAATatttgt
                     atcgatccCTGTATATTACTTAATTGTTtagcaaataaactaaccgggaattttaagg
                     a"
                     /listShort="S300, ygaE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(924417..925706)
                     /gene="gsaB"
                     /locus_tag="BSU_08710"
                     /old_locus_tag="BSU08710"
                     /EC_number="5.4.3.8"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15231799, 19930658;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde aminotransferase,
                     classIII aminotransferase"
                     /protein_id="NP_388751.3"
                     /db_xref="EnsemblGenomes-Gn:BSU08710"
                     /db_xref="EnsemblGenomes-Tr:CAB12699"
                     /db_xref="GOA:P71084"
                     /db_xref="InterPro:IPR004639"
                     /db_xref="InterPro:IPR005814"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG11943"
                     /db_xref="UniProtKB/Swiss-Prot:P71084"
                     /translation="MHTKSIELHNEALQHIVGGVNSPSRSYKAVGGGSPVAMEKASGA
                     YFWDVDGNKYIDYLAAYGPIITGHAHPHITEAIKKAAENGVLYGTPTKHEVTFAKMLK
                     EAIPAMDKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPS
                     TLGTPDSAGVPKSIANEVITVPFNDIDSYKAALEKWGSEIAAVLVEPIVGNFGIVEPK
                     EGFLEQVNELTHNAGALVIYDEVITAFRFMYGGAQDLLQVKPDLTALGKIIGGGLPIG
                     AYGGKQEIMEQVAPLGPAYQAGTMAGNPASILSGIACLEVLKEKGVYEKLDHLGAMLE
                     EGILKHAETHGITITVNRLKGALTVYFSDEKVENYEQAERSDGETFSTFFKLMLERGI
                     NLAPSKYEAWFITTAHTEQDIKDTLTAVEDAFKHLKN*"
     gene            complement(924417..925706)
                     /gene="gsaB"
                     /locus_tag="BSU_08710"
                     /old_locus_tag="BSU08710"
     downshifts      complement(924420)
                     /Source="Nicolas_upshifts"
                     /id="D436"
                     /incds=0
                     /nref=235
                     /ntot=258
                     /MaxReadThrough="2.54961"
                     /MaxDrop="5.8522"
                     /score="29.5551149"
                     /energy="-11"
                     /TU="NA"
                     /idTUdmin="U669"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(925734..925753)
                     /Source="Nicolas_upshift_promotors"
                     /id="U669"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1888
                     /SigmaFactorBS="tccagattacaaccatctcagctgaatctgaagcccgaagcc
                     aTTGTTCttgttcggaagCATGCTACAATAGAAAGGACgcatggagatataggaggtt
                     t"
                     /listShort="gsaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(925753)
                     /Source="Nicolas_upshifts"
                     /id="U669"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1888
                     /SigmaFactorBS="tccagattacaaccatctcagctgaatctgaagcccgaagcc
                     aTTGTTCttgttcggaagCATGCTACAATAGAAAGGACgcatggagatataggaggtt
                     t"
                     /listShort="gsaB"
                     /GFF_Attribute="listLong"
     S_feature       complement(925755..926466)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_943787_944498_c"
                     /HighExp="LoTm, M9-stat, B60, S8, C30, Cold, B36, T1.30H,
                     Etha, T2.0H"
                     /AntisenseName="ygaF"
                     /AntisenseCor="-0.29702219161000198"
                     /AntisenseRegPval="-6.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S301"
     promotor_-35    complement(925765..925770)
                     /Source="Nicolas_upshift_promotors"
                     /id="U669"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1888
                     /SigmaFactorBS="tccagattacaaccatctcagctgaatctgaagcccgaagcc
                     aTTGTTCttgttcggaagCATGCTACAATAGAAAGGACgcatggagatataggaggtt
                     t"
                     /listShort="gsaB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    925799..925806
                     /Source="Nicolas_upshift_promotors"
                     /id="U670"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig=1
                     /xcortree=2268
                     /SigmaFactorBS="aacaagaacaatggcttcgggcttcagattcagctgagaTGG
                     TTGTAatctggacaagaaTTGGATACGCTTAATAAAAAaacatccggaggtaacgtaa
                     t"
                     /listShort="ygaF, perR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    925820..925839
                     /Source="Nicolas_upshift_promotors"
                     /id="U670"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig=1
                     /xcortree=2268
                     /SigmaFactorBS="aacaagaacaatggcttcgggcttcagattcagctgagaTGG
                     TTGTAatctggacaagaaTTGGATACGCTTAATAAAAAaacatccggaggtaacgtaa
                     t"
                     /listShort="ygaF, perR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        925820
                     /Source="Nicolas_upshifts"
                     /id="U670"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig=1
                     /xcortree=2268
                     /SigmaFactorBS="aacaagaacaatggcttcgggcttcagattcagctgagaTGG
                     TTGTAatctggacaagaaTTGGATACGCTTAATAAAAAaacatccggaggtaacgtaa
                     t"
                     /listShort="ygaF, perR"
                     /GFF_Attribute="listLong"
     CDS             925859..926332
                     /gene="bcp"
                     /locus_tag="BSU_08720"
                     /old_locus_tag="BSU08720"
                     /EC_number="1.11.1.15"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10644761, 11349039,
                     12950915, 21910476, 26723255; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin with versatile activity"
                     /protein_id="YP_054574.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08720"
                     /db_xref="EnsemblGenomes-Tr:CAB12700"
                     /db_xref="GOA:Q796Y8"
                     /db_xref="InterPro:IPR000866"
                     /db_xref="InterPro:IPR013766"
                     /db_xref="InterPro:IPR024706"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="SubtiList:BG12226"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Y8"
                     /translation="MTIEIGQKAPDLELKGDHGETVKLSDYKGKYIVLYFYPKDMTPG
                     CTTEACDFRDSHESFAELDAVIIGVSPDSQEKHGKFKEKHNLPFLLLVDDEHKLAEAF
                     DVWKLKKNFGKEYMGIERSTFLIDKEGRLIKEWRKVKVKDHVAEALQTLKDMSEK*"
     gene            925859..926332
                     /gene="bcp"
                     /locus_tag="BSU_08720"
                     /old_locus_tag="BSU08720"
     promotor_-35    926369..926376
                     /Source="Nicolas_upshift_promotors"
                     /id="U671"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=1534
                     /SigmaFactorBS="ctatgagcctatgcttacttttaccctgatatCAATTGACaa
                     attatcgtagaaAGAGTTACACTAATTATAAAcattacaatgtaagaattttttttag
                     a"
                     /listShort="perR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    926391..926410
                     /Source="Nicolas_upshift_promotors"
                     /id="U671"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=1534
                     /SigmaFactorBS="ctatgagcctatgcttacttttaccctgatatCAATTGACaa
                     attatcgtagaaAGAGTTACACTAATTATAAAcattacaatgtaagaattttttttag
                     a"
                     /listShort="perR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        926397
                     /Source="Nicolas_upshifts"
                     /id="U671"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.608391608391608"
                     /psig=1
                     /xcortree=1534
                     /SigmaFactorBS="ctatgagcctatgcttacttttaccctgatatCAATTGACaa
                     attatcgtagaaAGAGTTACACTAATTATAAAcattacaatgtaagaattttttttag
                     a"
                     /listShort="perR"
                     /GFF_Attribute="listLong"
     CDS             926455..926892
                     /gene="perR"
                     /locus_tag="BSU_08730"
                     /old_locus_tag="BSU08730"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:1580225, 16541078, 16925555, 22194458, 27935957,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1580225, 16541078,
                     16925555, 22194458, 27935957, 22720735; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (Fur family)"
                     /protein_id="NP_388753.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08730"
                     /db_xref="EnsemblGenomes-Tr:CAB12701"
                     /db_xref="GOA:P71086"
                     /db_xref="InterPro:IPR002481"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2FE3"
                     /db_xref="PDB:2RGV"
                     /db_xref="PDB:3F8N"
                     /db_xref="SubtiList:BG12227"
                     /db_xref="UniProtKB/Swiss-Prot:P71086"
                     /translation="MAAHELKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIY
                     KALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFVTSDHYHAICENCGKI
                     VDFHYPGLDEVEQLAAHVTGFKVSHHRLEIYGVCQECSKKENH*"
     gene            926455..926892
                     /gene="perR"
                     /locus_tag="BSU_08730"
                     /old_locus_tag="BSU08730"
     downshifts      926874
                     /Source="Nicolas_upshifts"
                     /id="D437"
                     /incds=0
                     /nref=149
                     /ntot=247
                     /MaxReadThrough="3.98479"
                     /MaxDrop="7.52234"
                     /score="1.62878623"
                     /energy="-12.3"
                     /TU="U670,U671"
                     /idTUdmin="U670"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     CDS             complement(926927..927280)
                     /gene="ygzB"
                     /locus_tag="BSU_08740"
                     /old_locus_tag="BSU08740"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="YP_054575.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08740"
                     /db_xref="EnsemblGenomes-Tr:CAE01450"
                     /db_xref="GOA:Q7WY74"
                     /db_xref="InterPro:IPR020912"
                     /db_xref="SubtiList:BG14192"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY74"
                     /translation="MAKYSSKINKIRTFALSLVFVGFIIMYIGIFFKESVLLSSLFMI
                     LGLLSIGLSTVVYFWIGMLSTKAVRVICPGCDKETKVLGVVDMCMHCREPLTLDKGLE
                     GKEFDESYNKKKMSK*"
     gene            complement(926927..927280)
                     /gene="ygzB"
                     /locus_tag="BSU_08740"
                     /old_locus_tag="BSU08740"
     downshifts      926940
                     /Source="Nicolas_upshifts"
                     /id="D438"
                     /incds=0
                     /nref=1
                     /ntot=40
                     /MaxReadThrough="2.62283"
                     /MaxDrop="4.13562"
                     /score="-4.23596421"
                     /energy="-12.5"
                     /TU="NA"
                     /idTUdmin="U670"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(926950)
                     /Source="Nicolas_upshifts"
                     /id="D439"
                     /incds=0
                     /nref=182
                     /ntot=253
                     /MaxReadThrough="4.02571"
                     /MaxDrop="6.23378"
                     /score="9.51667757"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U673"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    927276..927280
                     /Source="Nicolas_upshift_promotors"
                     /id="U672"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.892107892107892"
                     /psig="0.0739260739260739"
                     /xcortree=2130
                     /SigmaFactorBS="ttaacgcaaatgttctgattttattaattttgctggagtatt
                     tcGCCATgtccatcCCCCTCTGTTTTAACtatagcacaaacccgatgggattttcttc
                     a"
                     /listShort="S302, S303, ygxA"
                     /listLong="S304, rrnD-16S"
                     /label="promotor_-35"
     promotor_-10    927288..927302
                     /Source="Nicolas_upshift_promotors"
                     /id="U672"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.892107892107892"
                     /psig="0.0739260739260739"
                     /xcortree=2130
                     /SigmaFactorBS="ttaacgcaaatgttctgattttattaattttgctggagtatt
                     tcGCCATgtccatcCCCCTCTGTTTTAACtatagcacaaacccgatgggattttcttc
                     a"
                     /listShort="S302, S303, ygxA"
                     /listLong="S304, rrnD-16S"
                     /label="promotor_-10"
     misc_feature    complement(927292..927311)
                     /Source="Nicolas_upshift_promotors"
                     /id="U673"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.949050949050949"
                     /psig="0.998001998001998"
                     /xcortree=432
                     /SigmaFactorBS="catatgtaaattccagttcaaccgaaaacatgaagaaaatcc
                     catcgggttTGTGCTATAGTTAAAACAGAgggggatggacatggcgaaatactccagc
                     a"
                     /listShort="ygzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       927292..927383
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_945324_945415"
                     /HighExp="Cold, C30, H2O2, Etha, dia15, G135, Paraq, C90,
                     G180, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.0739"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S302"
     upshifts        927292
                     /Source="Nicolas_upshifts"
                     /id="U672"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.892107892107892"
                     /psig="0.0739260739260739"
                     /xcortree=2130
                     /SigmaFactorBS="ttaacgcaaatgttctgattttattaattttgctggagtatt
                     tcGCCATgtccatcCCCCTCTGTTTTAACtatagcacaaacccgatgggattttcttc
                     a"
                     /listShort="S302, S303, ygxA"
                     /listLong="S304, rrnD-16S"
     upshifts        complement(927302)
                     /Source="Nicolas_upshifts"
                     /id="U673"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.949050949050949"
                     /psig="0.998001998001998"
                     /xcortree=432
                     /SigmaFactorBS="catatgtaaattccagttcaaccgaaaacatgaagaaaatcc
                     catcgggttTGTGCTATAGTTAAAACAGAgggggatggacatggcgaaatactccagc
                     a"
                     /listShort="ygzB"
                     /GFF_Attribute="listLong"
     promotor_-35    927360..927363
                     /Source="Nicolas_upshift_promotors"
                     /id="U674"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig="0.996003996003996"
                     /xcortree=95
                     /SigmaFactorBS="tttcttcatgttttcggttgaactggaatttacatATGGaga
                     gttactgtgaaATTGTTTATAATAGTTCAATgtgtttagaaaaaaggaatttcgtttt
                     a"
                     /listShort="S303, ygxA, S304"
                     /listLong="rrnD-16S"
                     /label="promotor_-35"
     promotor_-10    927378..927397
                     /Source="Nicolas_upshift_promotors"
                     /id="U674"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig="0.996003996003996"
                     /xcortree=95
                     /SigmaFactorBS="tttcttcatgttttcggttgaactggaatttacatATGGaga
                     gttactgtgaaATTGTTTATAATAGTTCAATgtgtttagaaaaaaggaatttcgtttt
                     a"
                     /listShort="S303, ygxA, S304"
                     /listLong="rrnD-16S"
                     /label="promotor_-10"
     S_feature       927385..927487
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_945417_945519"
                     /HighExp="BMM, Cold, LBGstat, C30, Oxctl, LBGexp, Paraq,
                     G180, Lbexp, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, Sig-"
                     /TUshortPSig="0.996, 0.0739"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S303"
     upshifts        927385
                     /Source="Nicolas_upshifts"
                     /id="U674"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.736263736263736"
                     /psig="0.996003996003996"
                     /xcortree=95
                     /SigmaFactorBS="tttcttcatgttttcggttgaactggaatttacatATGGaga
                     gttactgtgaaATTGTTTATAATAGTTCAATgtgtttagaaaaaaggaatttcgtttt
                     a"
                     /listShort="S303, ygxA, S304"
                     /listLong="rrnD-16S"
     CDS             927488..928372
                     /gene="ygxA"
                     /locus_tag="BSU_08750"
                     /old_locus_tag="BSU08750"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388755.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08750"
                     /db_xref="EnsemblGenomes-Tr:CAB12703"
                     /db_xref="InterPro:IPR029348"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG10951"
                     /db_xref="UniProtKB/Swiss-Prot:Q04385"
                     /translation="MENLLRPIYQERASHPNTLAVIMIERRNKTSSLTDNFDAALLVI
                     VKDADEPVFIKHYEFDHQTASLHVVTDSQIQEWILLGTNRRIIDWIVNGRVLFDRNEY
                     VVELIDRLNTFPFAERKLKIGLEYGKLIRRYVEGKAFFEANQFLDAYNAVVHALHHLA
                     RIEVIDRGFHPETTVWSQVRQMEPQVYKLYSELIESHESLEKRLELLFLANDFLIHSK
                     AEIGSAHLFEVMKEKDIWQFGELLQHHDLKHFTQDLGVMLDYLTEKGLINVCQIETKG
                     QAVYHRGYSFKKGVDSDS*"
     gene            927488..928372
                     /gene="ygxA"
                     /locus_tag="BSU_08750"
                     /old_locus_tag="BSU08750"
     promotor_-35    928355..928362
                     /Source="Nicolas_upshift_promotors"
                     /id="U675"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2619
                     /SigmaFactorBS="cgaggatattcttttaaaaaaggtGTTGACTCtgattcttga
                     ccgTGTTATATTATTAAACGTCGctgatgcgcttctgagaaaacaagctcacagcggc
                     g"
                     /listShort="S304, rrnD-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    928376..928395
                     /Source="Nicolas_upshift_promotors"
                     /id="U675"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2619
                     /SigmaFactorBS="cgaggatattcttttaaaaaaggtGTTGACTCtgattcttga
                     ccgTGTTATATTATTAAACGTCGctgatgcgcttctgagaaaacaagctcacagcggc
                     g"
                     /listShort="S304, rrnD-16S"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       928391..928663
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_946423_946695"
                     /HighExp="LBGstat, Oxctl, C30, Paraq, GM 120, H2O2, HPh,
                     G150, LPh, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.106881"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.996"
                     /TUlongSig="Sig-"
                     /TUlongPSig="0.0739"
                     /label="S304"
     upshifts        928391
                     /Source="Nicolas_upshifts"
                     /id="U675"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2619
                     /SigmaFactorBS="cgaggatattcttttaaaaaaggtGTTGACTCtgattcttga
                     ccgTGTTATATTATTAAACGTCGctgatgcgcttctgagaaaacaagctcacagcggc
                     g"
                     /listShort="S304, rrnD-16S"
                     /GFF_Attribute="listLong"
     downshifts      complement(928424)
                     /Source="Nicolas_upshifts"
                     /id="D440"
                     /incds=0
                     /nref=1
                     /ntot=20
                     /MaxReadThrough="2.70619"
                     /MaxDrop="3.85046"
                     /score="4.43428373"
                     /energy="-7.8"
                     /TU="NA"
                     /idTUdmin="U673"
                     /TUdmin="-1474"
                     /isTUend="FALSE"
     rRNA            928664..930218
                     /gene="rrnD-16S"
                     /locus_tag="BSU_rRNA_22"
                     /product="ribosomal RNA-16S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            928664..930218
                     /gene="rrnD-16S"
                     /locus_tag="BSU_rRNA_22"
     rRNA            930386..933313
                     /gene="rrnD-23S"
                     /locus_tag="BSU_rRNA_17"
                     /product="ribosomal RNA-23S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            930386..933313
                     /gene="rrnD-23S"
                     /locus_tag="BSU_rRNA_17"
     S_feature       933314..933399
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_951346_951431"
                     /HighExp="G135, C30, Oxctl, Paraq, LBGstat, dia0, HiTm,
                     Fru, G180, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S305"
     promotor_-35    933375..933382
                     /Source="Nicolas_upshift_promotors"
                     /id="U676"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig=1
                     /xcortree=2417
                     /SigmaFactorBS="ctagttttgagagaataagtttttcaaaaaaacaCTTGATTT
                     tctcaagaatacaTAGTATAATGTTAAATGTCActgaaattgtctggtgatgatggcg
                     a"
                     /listShort="rrnD-5S, trnD-Asn, trnD-Ser, trnD-Glu,
                     trnD-Val, trnD-Met, trnD-Asp, trnD-Phe, trnD-Thr,
                     trnD-Tyr, trnD-Trp, trnD-His, trnD-Gln, trnD-Gly,
                     trnD-Cys, trnD-Leu1, S306, S307, trnD-Leu2, ygzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    933396..933415
                     /Source="Nicolas_upshift_promotors"
                     /id="U676"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig=1
                     /xcortree=2417
                     /SigmaFactorBS="ctagttttgagagaataagtttttcaaaaaaacaCTTGATTT
                     tctcaagaatacaTAGTATAATGTTAAATGTCActgaaattgtctggtgatgatggcg
                     a"
                     /listShort="rrnD-5S, trnD-Asn, trnD-Ser, trnD-Glu,
                     trnD-Val, trnD-Met, trnD-Asp, trnD-Phe, trnD-Thr,
                     trnD-Tyr, trnD-Trp, trnD-His, trnD-Gln, trnD-Gly,
                     trnD-Cys, trnD-Leu1, S306, S307, trnD-Leu2, ygzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        933401
                     /Source="Nicolas_upshifts"
                     /id="U676"
                     /multdbtbs="SigA"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.852147852147852"
                     /psig=1
                     /xcortree=2417
                     /SigmaFactorBS="ctagttttgagagaataagtttttcaaaaaaacaCTTGATTT
                     tctcaagaatacaTAGTATAATGTTAAATGTCActgaaattgtctggtgatgatggcg
                     a"
                     /listShort="rrnD-5S, trnD-Asn, trnD-Ser, trnD-Glu,
                     trnD-Val, trnD-Met, trnD-Asp, trnD-Phe, trnD-Thr,
                     trnD-Tyr, trnD-Trp, trnD-His, trnD-Gln, trnD-Gly,
                     trnD-Cys, trnD-Leu1, S306, S307, trnD-Leu2, ygzA"
                     /GFF_Attribute="listLong"
     rRNA            933425..933540
                     /gene="rrnD-5S"
                     /locus_tag="BSU_rRNA_18"
                     /product="ribosomal RNA-5S"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            933425..933540
                     /gene="rrnD-5S"
                     /locus_tag="BSU_rRNA_18"
     tRNA            933550..933624
                     /gene="asnTA"
                     /locus_tag="BSU_tRNA_29"
                     /product="tRNA-Asn"
                     /inference="profile:tRNAscan:1.23"
                     /note="asparagine transfer RNA (GUU); Evidence 2a:
                     Function from experimental evidences in other organisms;
                     Product type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            933550..933624
                     /gene="asnTA"
                     /locus_tag="BSU_tRNA_29"
     tRNA            933630..933721
                     /gene="trnD-Ser"
                     /locus_tag="BSU_tRNA_30"
                     /product="tRNA-Ser"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Ser(GGA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            933630..933721
                     /gene="trnD-Ser"
                     /locus_tag="BSU_tRNA_30"
     downshifts      933717
                     /Source="Nicolas_upshifts"
                     /id="D441"
                     /incds=0
                     /nref=2
                     /ntot=20
                     /MaxReadThrough="7.64297"
                     /MaxDrop="4.37505"
                     /score="-9.7424199"
                     /energy="-11"
                     /TU="U676"
                     /idTUdmin="U677"
                     /TUdmin="-1562"
                     /isTUend="FALSE"
     tRNA            933756..933827
                     /gene="trnD-Glu"
                     /locus_tag="BSU_tRNA_31"
                     /product="tRNA-Glu"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Glu(UUC); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            933756..933827
                     /gene="trnD-Glu"
                     /locus_tag="BSU_tRNA_31"
     tRNA            933837..933912
                     /gene="trnD-Val"
                     /locus_tag="BSU_tRNA_32"
                     /product="tRNA-Val"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Val(UAC); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            933837..933912
                     /gene="trnD-Val"
                     /locus_tag="BSU_tRNA_32"
     tRNA            933922..933998
                     /gene="trnD-Met"
                     /locus_tag="BSU_tRNA_33"
                     /product="tRNA-Met"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Met(CAU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            933922..933998
                     /gene="trnD-Met"
                     /locus_tag="BSU_tRNA_33"
     tRNA            934010..934086
                     /gene="trnD-Asp"
                     /locus_tag="BSU_tRNA_34"
                     /product="tRNA-Asp"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Asp(GUC); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934010..934086
                     /gene="trnD-Asp"
                     /locus_tag="BSU_tRNA_34"
     tRNA            934099..934174
                     /gene="trnD-Phe"
                     /locus_tag="BSU_tRNA_35"
                     /product="tRNA-Phe"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Phe(GAA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934099..934174
                     /gene="trnD-Phe"
                     /locus_tag="BSU_tRNA_35"
     tRNA            934180..934252
                     /gene="trnD-Thr"
                     /locus_tag="BSU_tRNA_36"
                     /product="tRNA-Thr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Thr(UGU); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934180..934252
                     /gene="trnD-Thr"
                     /locus_tag="BSU_tRNA_36"
     tRNA            934275..934359
                     /gene="trnD-Tyr"
                     /locus_tag="BSU_tRNA_37"
                     /product="tRNA-Tyr"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Tyr(GUA); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934275..934359
                     /gene="trnD-Tyr"
                     /locus_tag="BSU_tRNA_37"
     tRNA            934365..934438
                     /gene="trnD-Trp"
                     /locus_tag="BSU_tRNA_38"
                     /product="tRNA-Trp"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Trp(CCA); Evidence 1a: Function from
                     experimental evidences in the studied strain; Product type
                     n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934365..934438
                     /gene="trnD-Trp"
                     /locus_tag="BSU_tRNA_38"
     tRNA            934463..934538
                     /gene="trnD-His"
                     /locus_tag="BSU_tRNA_39"
                     /product="tRNA-His"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-His(GUG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934463..934538
                     /gene="trnD-His"
                     /locus_tag="BSU_tRNA_39"
     tRNA            934548..934619
                     /gene="trnD-Gln"
                     /locus_tag="BSU_tRNA_40"
                     /product="tRNA-Gln"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gln(UUG); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934548..934619
                     /gene="trnD-Gln"
                     /locus_tag="BSU_tRNA_40"
     tRNA            934669..934743
                     /gene="glyTB"
                     /locus_tag="BSU_tRNA_41"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="glycine transfer RNA (GCC); Evidence 1a: Function
                     from experimental evidences in the studied strain; Product
                     type n: RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934669..934743
                     /gene="glyTB"
                     /locus_tag="BSU_tRNA_41"
     tRNA            934749..934819
                     /gene="cysTA"
                     /locus_tag="BSU_tRNA_42"
                     /product="tRNA-Cys"
                     /inference="profile:tRNAscan:1.23"
                     /note="cysteine tRNA (GCA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934749..934819
                     /gene="cysTA"
                     /locus_tag="BSU_tRNA_42"
     tRNA            934827..934915
                     /gene="leuTA"
                     /locus_tag="BSU_tRNA_43"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="leucine RNA (UAA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            934827..934915
                     /gene="leuTA"
                     /locus_tag="BSU_tRNA_43"
     S_feature       934916..934992
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_952948_953024"
                     /HighExp="Paraq, C30, Oxctl, G180, G135, Heat, BMM,
                     LBGexp, dia15, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S306"
     downshifts      934949
                     /Source="Nicolas_upshifts"
                     /id="D442"
                     /incds=0
                     /nref=18
                     /ntot=231
                     /MaxReadThrough="5.36857"
                     /MaxDrop="5.05259"
                     /score="16.6649124"
                     /energy="-8.9"
                     /TU="U676"
                     /idTUdmin="U677"
                     /TUdmin="-330"
                     /isTUend="FALSE"
     S_feature       934994..935162
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_953026_953194"
                     /HighExp="Heat, Paraq, BMM, Oxctl, H2O2, Cold, G180, Pyr,
                     C30, Glu"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S307"
     promotor_-35    935119..935126
                     /Source="Nicolas_upshift_promotors"
                     /id="U677"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=687
                     /SigmaFactorBS="acttttttgaaatacGTTGACACtttatgagatccaTGATAT
                     ATTTATATTCGTCGgttagatacgacgtaaaacttgccggtgtggcggaattggcaga
                     c"
                     /listShort="trnD-Leu2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      935125
                     /Source="Nicolas_upshifts"
                     /id="D443"
                     /incds=0
                     /nref=1
                     /ntot=14
                     /MaxReadThrough="3.84674"
                     /MaxDrop="3.439"
                     /score="35.1424037"
                     /energy="-12.4"
                     /TU="U676"
                     /idTUdmin="U677"
                     /TUdmin="-154"
                     /isTUend="FALSE"
     promotor_-10    935140..935159
                     /Source="Nicolas_upshift_promotors"
                     /id="U677"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=687
                     /SigmaFactorBS="acttttttgaaatacGTTGACACtttatgagatccaTGATAT
                     ATTTATATTCGTCGgttagatacgacgtaaaacttgccggtgtggcggaattggcaga
                     c"
                     /listShort="trnD-Leu2"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        935164
                     /Source="Nicolas_upshifts"
                     /id="U677"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.927072927072927"
                     /psig="0.998001998001998"
                     /xcortree=687
                     /SigmaFactorBS="acttttttgaaatacGTTGACACtttatgagatccaTGATAT
                     ATTTATATTCGTCGgttagatacgacgtaaaacttgccggtgtggcggaattggcaga
                     c"
                     /listShort="trnD-Leu2"
                     /GFF_Attribute="listLong"
     tRNA            935181..935262
                     /gene="leuTB"
                     /locus_tag="BSU_tRNA_44"
                     /product="tRNA-Leu"
                     /inference="profile:tRNAscan:1.23"
                     /note="leucine tRNA(CAA); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            935181..935262
                     /gene="leuTB"
                     /locus_tag="BSU_tRNA_44"
     promotor_-10    complement(935198..935215)
                     /Source="Nicolas_upshift_promotors"
                     /id="U678"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.925074925074925"
                     /psig="0.012987012987013"
                     /xcortree=395
                     /SigmaFactorBS="accggtggtcggggtcgaacCGACACtccagaaggaacacga
                     ttttGAGTCGTGCGCGTCTGCCaattccgccacaccggcaagttttacgtcgtatcta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(935201)
                     /Source="Nicolas_upshifts"
                     /id="U678"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.925074925074925"
                     /psig="0.012987012987013"
                     /xcortree=395
                     /SigmaFactorBS="accggtggtcggggtcgaacCGACACtccagaaggaacacga
                     ttttGAGTCGTGCGCGTCTGCCaattccgccacaccggcaagttttacgtcgtatcta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(935236..935241)
                     /Source="Nicolas_upshift_promotors"
                     /id="U678"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.925074925074925"
                     /psig="0.012987012987013"
                     /xcortree=395
                     /SigmaFactorBS="accggtggtcggggtcgaacCGACACtccagaaggaacacga
                     ttttGAGTCGTGCGCGTCTGCCaattccgccacaccggcaagttttacgtcgtatcta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(935271)
                     /Source="Nicolas_upshifts"
                     /id="D444"
                     /incds=0
                     /nref=5
                     /ntot=151
                     /MaxReadThrough="1.64364"
                     /MaxDrop="6.28675"
                     /score="7.71223568"
                     /energy="-12.4"
                     /TU="NA"
                     /idTUdmin="U679"
                     /TUdmin=18
                     /isTUend="TRUE"
     CDS             complement(935341..936117)
                     /gene="spo0M"
                     /locus_tag="BSU_08760"
                     /old_locus_tag="BSU08760"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:9795118, 22142536, 26625291, 28234965"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9795118, 22142536,
                     26625291, 28234965; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="protein involved in the control of the cell
                     cycle as a function of the environment"
                     /protein_id="NP_388756.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08760"
                     /db_xref="EnsemblGenomes-Tr:CAB12704"
                     /db_xref="GOA:P71088"
                     /db_xref="InterPro:IPR009776"
                     /db_xref="InterPro:IPR014756"
                     /db_xref="PDB:5CL2"
                     /db_xref="SubtiList:BG12229"
                     /db_xref="UniProtKB/Swiss-Prot:P71088"
                     /translation="MSFFKKLAASAGIGAAKVDTILEKDAYFPGEEVQGTVHVKGGKI
                     AQDIRYIDLQLSTRYVIVKDDEEHRKYATIHSFRVTGSFTIQPGEEHQFPFTFTLPLD
                     TPITVGKVEVAVVTDLDIQGGIDKSDHDRIFVEAHPWIENVLEAIENLGFRLNEADCE
                     QAPYFQRRLPFVQEFEFVPTSGYYRQMLDELELIFLLDEDGLEIIFEVDRRARGLRGW
                     LEEMYNDGEQLVRVRFSQSELEDTEELEEVLEEILDQYAE*"
     gene            complement(935341..936117)
                     /gene="spo0M"
                     /locus_tag="BSU_08760"
                     /old_locus_tag="BSU08760"
     downshifts      complement(935355)
                     /Source="Nicolas_upshifts"
                     /id="D445"
                     /incds=0
                     /nref=9
                     /ntot=131
                     /MaxReadThrough="6.06864"
                     /MaxDrop="6.58787"
                     /score="6.75662782"
                     /energy="-7"
                     /TU="U679"
                     /idTUdmin="U679"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     promotor_-10    complement(936144..936159)
                     /Source="Nicolas_upshift_promotors"
                     /id="U679"
                     /multdbtbs="SigH"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1665
                     /SigmaFactorBS="tgtccctaggccgagacgaataataggaaaaaagtatgaatc
                     aaaCGAATCTTTTttcctccttcttACGTATATCTGTTGAGaaaaaagaaaaagggga
                     a"
                     /listShort="spo0M"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(936166)
                     /Source="Nicolas_upshifts"
                     /id="U679"
                     /multdbtbs="SigH"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1665
                     /SigmaFactorBS="tgtccctaggccgagacgaataataggaaaaaagtatgaatc
                     aaaCGAATCTTTTttcctccttcttACGTATATCTGTTGAGaaaaaagaaaaagggga
                     a"
                     /listShort="spo0M"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(936172..936181)
                     /Source="Nicolas_upshift_promotors"
                     /id="U679"
                     /multdbtbs="SigH"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1665
                     /SigmaFactorBS="tgtccctaggccgagacgaataataggaaaaaagtatgaatc
                     aaaCGAATCTTTTttcctccttcttACGTATATCTGTTGAGaaaaaagaaaaagggga
                     a"
                     /listShort="spo0M"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    936201..936207
                     /Source="Nicolas_upshift_promotors"
                     /id="U680"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=873
                     /SigmaFactorBS="ggaggaaaaaagattcgtttgattcatacttttttcCTATTA
                     TtcgtctcggcctagGGACAGACTAAGaataatattgaaaataaaggagtcgatggaa
                     g"
                     /listShort="ygzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    936222..936233
                     /Source="Nicolas_upshift_promotors"
                     /id="U680"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=873
                     /SigmaFactorBS="ggaggaaaaaagattcgtttgattcatacttttttcCTATTA
                     TtcgtctcggcctagGGACAGACTAAGaataatattgaaaataaaggagtcgatggaa
                     g"
                     /listShort="ygzA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        936225
                     /Source="Nicolas_upshifts"
                     /id="U680"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=873
                     /SigmaFactorBS="ggaggaaaaaagattcgtttgattcatacttttttcCTATTA
                     TtcgtctcggcctagGGACAGACTAAGaataatattgaaaataaaggagtcgatggaa
                     g"
                     /listShort="ygzA"
                     /GFF_Attribute="listLong"
     CDS             936259..936462
                     /gene="ygzA"
                     /locus_tag="BSU_08770"
                     /old_locus_tag="BSU08770"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388757.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08770"
                     /db_xref="EnsemblGenomes-Tr:CAB12705"
                     /db_xref="SubtiList:BG12981"
                     /db_xref="UniProtKB/Swiss-Prot:O31586"
                     /translation="MEVNKESLVADELHRMFLAGELQITVEEDINNISERLRNGDLSL
                     DRLSGEDVFIKETVNEALRRVEQ*"
     gene            936259..936462
                     /gene="ygzA"
                     /locus_tag="BSU_08770"
                     /old_locus_tag="BSU08770"
     downshifts      936445
                     /Source="Nicolas_upshifts"
                     /id="D446"
                     /incds=0
                     /nref=22
                     /ntot=97
                     /MaxReadThrough="1.47004"
                     /MaxDrop="5.47861"
                     /score="15.4081475"
                     /energy="-18.2"
                     /TU="NA"
                     /idTUdmin="U676"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(936521)
                     /Source="Nicolas_upshifts"
                     /id="D447"
                     /incds=0
                     /nref=10
                     /ntot=35
                     /MaxReadThrough="1.31339"
                     /MaxDrop="4.8918"
                     /score="26.0684119"
                     /energy="-18.2"
                     /TU="NA"
                     /idTUdmin="U681"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(936547..936819)
                     /gene="ygzC"
                     /locus_tag="BSU_08779"
                     /old_locus_tag="BSU08779"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore coat protein"
                     /protein_id="YP_003097696.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08779"
                     /db_xref="EnsemblGenomes-Tr:CAX52583"
                     /db_xref="GOA:C0H3X8"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="InterPro:IPR012851"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X8"
                     /translation="MYRSKKQSQILSYQELLKKQRRWFPIEQSLCPKDILDLLTTIKT
                     SINKYTVATTATENPHIRRALHDQLDTAVYLHDELSDLLLEKGWLG*"
     gene            complement(936547..936819)
                     /gene="ygzC"
                     /locus_tag="BSU_08779"
                     /old_locus_tag="BSU08779"
     promotor_-10    complement(936778..936796)
                     /Source="Nicolas_upshift_promotors"
                     /id="U681"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=1185
                     /SigmaFactorBS="caaaatttgttgcttattatagcatttTGTATAgaagcaaga
                     aacaaagTCAAATACTTTCTTATCAGgagctgctaaaaaaacaaaggaggtggtttcc
                     c"
                     /listShort="ygzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(936785)
                     /Source="Nicolas_upshifts"
                     /id="U681"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=1185
                     /SigmaFactorBS="caaaatttgttgcttattatagcatttTGTATAgaagcaaga
                     aacaaagTCAAATACTTTCTTATCAGgagctgctaaaaaaacaaaggaggtggtttcc
                     c"
                     /listShort="ygzC"
                     /GFF_Attribute="listLong"
     promotor_-35    936800..936807
                     /Source="Nicolas_upshift_promotors"
                     /id="U682"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig=1
                     /xcortree=2885
                     /SigmaFactorBS="ttagcagctcctgataagaaagtatttgacttTGTTTCTTgc
                     ttctatacaaAATGCTATAATAAGCAACAAattttgttggggggtgtgatgatgaagc
                     a"
                     /listShort="ygaJ"
                     /listLong="NA, thiC, S308"
                     /label="promotor_-35"
     promotor_-35    complement(936813..936818)
                     /Source="Nicolas_upshift_promotors"
                     /id="U681"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=1185
                     /SigmaFactorBS="caaaatttgttgcttattatagcatttTGTATAgaagcaaga
                     aacaaagTCAAATACTTTCTTATCAGgagctgctaaaaaaacaaaggaggtggtttcc
                     c"
                     /listShort="ygzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    936820..936839
                     /Source="Nicolas_upshift_promotors"
                     /id="U682"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig=1
                     /xcortree=2885
                     /SigmaFactorBS="ttagcagctcctgataagaaagtatttgacttTGTTTCTTgc
                     ttctatacaaAATGCTATAATAAGCAACAAattttgttggggggtgtgatgatgaagc
                     a"
                     /listShort="ygaJ"
                     /listLong="NA, thiC, S308"
                     /label="promotor_-10"
     upshifts        936828
                     /Source="Nicolas_upshifts"
                     /id="U682"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.478521478521479"
                     /psig=1
                     /xcortree=2885
                     /SigmaFactorBS="ttagcagctcctgataagaaagtatttgacttTGTTTCTTgc
                     ttctatacaaAATGCTATAATAAGCAACAAattttgttggggggtgtgatgatgaagc
                     a"
                     /listShort="ygaJ"
                     /listLong="NA, thiC, S308"
     CDS             936861..937553
                     /gene="ygaJ"
                     /locus_tag="BSU_08780"
                     /old_locus_tag="BSU08780"
                     /EC_number="3.4.21.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative peptidase"
                     /protein_id="NP_388758.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08780"
                     /db_xref="EnsemblGenomes-Tr:CAB12706"
                     /db_xref="GOA:P71089"
                     /db_xref="InterPro:IPR005320"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG12230"
                     /db_xref="UniProtKB/Swiss-Prot:P71089"
                     /translation="MKQIIAMGGGGFSMEPDNLSLDQYILNQSKREQPRICFLPTASG
                     DSQNYIQRFYHAFQTLDCVPSHLSLFKPPSSDLVSFVMEMDVIYVGGGNTRNLLVLWK
                     EWGLDHILREAWKNGVVVAGISAGAICWFEEGVTDSAGPLTSLKSLGFLQGSFCPHYD
                     GEKDRRPAYHQLISNKFLCSGYAADDGAALHFINDQLFQTVSSRSGAKAYRVMMAEHE
                     IAEIPLPVKYLG*"
     gene            936861..937553
                     /gene="ygaJ"
                     /locus_tag="BSU_08780"
                     /old_locus_tag="BSU08780"
     promotor_-35    937582..937586
                     /Source="Nicolas_upshift_promotors"
                     /id="U684"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.946053946053946"
                     /xcortree=2883
                     /SigmaFactorBS="tctatattcctcTTTTTttcagattgatttTATGATAAGATG
                     AGTGCGAAatcaatagttactgggggtgcccgctttcgggctgagagagaaggcaagc
                     t"
                     /listShort="NA, thiC, S308"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(937585..937604)
                     /Source="Nicolas_upshift_promotors"
                     /id="U683"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig="0.997002997002997"
                     /xcortree=2976
                     /SigmaFactorBS="tctcagcccgaaagcgggcacccccagtaacTATTGATTtcg
                     cactcatcttaTCATAAAATCAATCTGAAAAaaagaggaatatagataatattcagcc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(937597)
                     /Source="Nicolas_upshifts"
                     /id="U683"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig="0.997002997002997"
                     /xcortree=2976
                     /SigmaFactorBS="tctcagcccgaaagcgggcacccccagtaacTATTGATTtcg
                     cactcatcttaTCATAAAATCAATCTGAAAAaaagaggaatatagataatattcagcc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    937600..937619
                     /Source="Nicolas_upshift_promotors"
                     /id="U684"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.946053946053946"
                     /xcortree=2883
                     /SigmaFactorBS="tctatattcctcTTTTTttcagattgatttTATGATAAGATG
                     AGTGCGAAatcaatagttactgggggtgcccgctttcgggctgagagagaaggcaagc
                     t"
                     /listShort="NA, thiC, S308"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(937619..937626)
                     /Source="Nicolas_upshift_promotors"
                     /id="U683"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.863136863136863"
                     /psig="0.997002997002997"
                     /xcortree=2976
                     /SigmaFactorBS="tctcagcccgaaagcgggcacccccagtaacTATTGATTtcg
                     cactcatcttaTCATAAAATCAATCTGAAAAaaagaggaatatagataatattcagcc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_RNA        937623..937730
                     /gene="tswD"
                     /locus_tag="BSU_misc_RNA_11"
                     /product="thiamine pyrophosphate riboswitch"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11470904, 12410317,
                     15862294, 16728979, 16962976, 17307816, 18179415,
                     18776013; Product type n: RNA"
                     /function="16.3: Control"
     gene            937623..937730
                     /gene="tswD"
                     /locus_tag="BSU_misc_RNA_11"
     upshifts        937630
                     /Source="Nicolas_upshifts"
                     /id="U684"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.946053946053946"
                     /xcortree=2883
                     /SigmaFactorBS="tctatattcctcTTTTTttcagattgatttTATGATAAGATG
                     AGTGCGAAatcaatagttactgggggtgcccgctttcgggctgagagagaaggcaagc
                     t"
                     /listShort="NA, thiC, S308"
                     /GFF_Attribute="listLong"
     downshifts      937761
                     /Source="Nicolas_upshifts"
                     /id="D448"
                     /incds=0
                     /nref=13
                     /ntot=48
                     /MaxReadThrough="8.09735"
                     /MaxDrop="5.74046"
                     /score="17.5556194"
                     /energy="-12.4"
                     /TU="U684"
                     /idTUdmin="U682"
                     /TUdmin=152
                     /isTUend="FALSE"
     CDS             937863..939635
                     /gene="thiC"
                     /locus_tag="BSU_08790"
                     /old_locus_tag="BSU08790"
                     /EC_number="4.1.99.17"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8432721, 9370266, 10382260, 16291685, 26443755"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8432721, 9370266,
                     10382260, 16291685, 26443755; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase"
                     /protein_id="NP_388759.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08790"
                     /db_xref="EnsemblGenomes-Tr:CAB12707"
                     /db_xref="GOA:P45740"
                     /db_xref="InterPro:IPR002817"
                     /db_xref="InterPro:IPR025747"
                     /db_xref="SubtiList:BG11246"
                     /db_xref="UniProtKB/Swiss-Prot:P45740"
                     /translation="MQNNSVQQANISIMSSFSGSKKVYVEGSSSDIQVPMREIALSPT
                     TGSFGEEENAPVRVYDTSGPYTDPEVTINIQEGLKPLRQKWITERGDVEEYEGRAIKP
                     EDNGYKKAKPNVSYPGLKRKPLRAKAGQNVTQMHYAKKGIITPEMEFIAIREHVSPEF
                     VRDEVASGRAIIPSNINHPESEPMIIGRNFHVKINANIGNSAVTSSIEEEVEKMTWAI
                     RWGADTMMDLSTGKDIHTTREWIIRNCPVPVGTVPIYQALEKVNGVAEDLTWEIYRDT
                     LIEQAEQGVDYFTIHAGVLLRYVPLTAKRTTGIVSRGGAIMAQWCLAHHQESFLYTHF
                     EEICEIMKMYDIAFSLGDGLRPGSIADANDEAQFAELETLGELTQIAWKHDVQVMIEG
                     PGHVPMHKIKENVDKQMDICKEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWYGTAM
                     LCYVTPKEHLGLPNRDDVREGVITYKIAAHAADLAKGHPGAQIRDDALSKARFEFRWR
                     DQFNLSLDPERALEYHDETLPAEGAKTAHFCSMCGPKFCSMRISQDIRDYAKKNDLSE
                     AEAINKGLKEKAKEFVDTGSNLYQ*"
     gene            937863..939635
                     /gene="thiC"
                     /locus_tag="BSU_08790"
                     /old_locus_tag="BSU08790"
     downshifts      939611
                     /Source="Nicolas_upshifts"
                     /id="D449"
                     /incds=0
                     /nref=166
                     /ntot=257
                     /MaxReadThrough="5.77069"
                     /MaxDrop="5.3684"
                     /score="25.2366359"
                     /energy="-15.3"
                     /TU="U684"
                     /idTUdmin="U684"
                     /TUdmin="-946"
                     /isTUend="FALSE"
     S_feature       939656..940581
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_957688_958613"
                     /HighExp="HiOs, GM-0.1, GM 45, GM 60, GM-0.2, BMM, MG 90,
                     T-5.40H, MG 15, MG 25"
                     /AntisenseName="ygaK"
                     /AntisenseCor="-9.7288827054566707E-2"
                     /AntisenseRegPval="-1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.946"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S308"
     CDS             complement(939673..941028)
                     /gene="ygaK"
                     /locus_tag="BSU_08800"
                     /old_locus_tag="BSU08800"
                     /EC_number="1.21.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8972604; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative FAD-dependent oxido-reductase"
                     /protein_id="NP_388760.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08800"
                     /db_xref="EnsemblGenomes-Tr:CAB12708"
                     /db_xref="GOA:Q796Y5"
                     /db_xref="InterPro:IPR006094"
                     /db_xref="InterPro:IPR012951"
                     /db_xref="InterPro:IPR016166"
                     /db_xref="InterPro:IPR016167"
                     /db_xref="InterPro:IPR016169"
                     /db_xref="InterPro:IPR036318"
                     /db_xref="SubtiList:BG12231"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Y5"
                     /translation="MEKTKLTGRIVTRDDPDYNEARTNINLSLERYPDIIVFCQNKQD
                     ALNALKWARENRVPFRIRGGRHSYENFSLLNNGLVIDLSEMKKITVNQDKKLAYIEAG
                     AELGEVYRTLWQYGLTLPAGTIANVGLTGLTLGGGIGLLTRAAGLTCDSLVQLEMIVA
                     DEKEGADLITVSCSNHPDLFWASQGGGGGNFGIVTSMTFKAVPISQVSIFSITWGWDD
                     FEEVYNTWQNWAPYTDDRLTSSIEFWPKEVNRIEALGQFVGPKTELKKLLKPLLKAGS
                     PTSGMVKTTPFIEAVTFFNSPGGNQPQKMKRSGSFIEKPLSERAISTIKHFLEHAPNQ
                     NASVWQQALGGAAGRVAPDQTAFYYRDAIIAQEYLTNWTSPGEKRQNVRWIEGLRTSL
                     SKETMGDYVNWPDIEIRNWPRTYYGENVERLRRVKTTYDPENVFRFEQSIPPLRRSLF
                     F*"
     gene            complement(939673..941028)
                     /gene="ygaK"
                     /locus_tag="BSU_08800"
                     /old_locus_tag="BSU08800"
     promotor_-10    complement(941056..941075)
                     /Source="Nicolas_upshift_promotors"
                     /id="U685"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1414
                     /SigmaFactorBS="tgttgacactgtatcagattgcatccccgctttttCCTTATA
                     CACtcttttcccctgaCGCATAAGCTAGAGAAACTAgaatacgagagaaagagatgtg
                     g"
                     /listShort="ygaK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(941073)
                     /Source="Nicolas_upshifts"
                     /id="U685"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1414
                     /SigmaFactorBS="tgttgacactgtatcagattgcatccccgctttttCCTTATA
                     CACtcttttcccctgaCGCATAAGCTAGAGAAACTAgaatacgagagaaagagatgtg
                     g"
                     /listShort="ygaK"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(941089..941098)
                     /Source="Nicolas_upshift_promotors"
                     /id="U685"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1414
                     /SigmaFactorBS="tgttgacactgtatcagattgcatccccgctttttCCTTATA
                     CACtcttttcccctgaCGCATAAGCTAGAGAAACTAgaatacgagagaaagagatgtg
                     g"
                     /listShort="ygaK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    941146..941152
                     /Source="Nicolas_upshift_promotors"
                     /id="U686"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.48951048951049"
                     /psig="0.954045954045954"
                     /xcortree=1737
                     /SigmaFactorBS="cctcaaaaaatAGTTGACaggtcggtattgtaTGAATTAACA
                     TGGTCAGTACaaatttttcaaatttatcgcgctgatcggaacaccgaaggctcttatc
                     g"
                     /listShort="senS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    941167..941186
                     /Source="Nicolas_upshift_promotors"
                     /id="U686"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.48951048951049"
                     /psig="0.954045954045954"
                     /xcortree=1737
                     /SigmaFactorBS="cctcaaaaaatAGTTGACaggtcggtattgtaTGAATTAACA
                     TGGTCAGTACaaatttttcaaatttatcgcgctgatcggaacaccgaaggctcttatc
                     g"
                     /listShort="senS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        941195
                     /Source="Nicolas_upshifts"
                     /id="U686"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.48951048951049"
                     /psig="0.954045954045954"
                     /xcortree=1737
                     /SigmaFactorBS="cctcaaaaaatAGTTGACaggtcggtattgtaTGAATTAACA
                     TGGTCAGTACaaatttttcaaatttatcgcgctgatcggaacaccgaaggctcttatc
                     g"
                     /listShort="senS"
                     /GFF_Attribute="listLong"
     CDS             941279..941476
                     /gene="senS"
                     /locus_tag="BSU_08810"
                     /old_locus_tag="BSU08810"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:1479343, 2108127, 8323536, 16321961"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1479343, 2108127,
                     8323536, 16321961; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (repressor of ScoC)"
                     /protein_id="NP_388761.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08810"
                     /db_xref="EnsemblGenomes-Tr:CAB12709"
                     /db_xref="GOA:P21344"
                     /db_xref="InterPro:IPR025004"
                     /db_xref="SubtiList:BG10747"
                     /db_xref="UniProtKB/Swiss-Prot:P21344"
                     /translation="MGVKKEKGRKRFRKRKTYGNQILPLELLIEKNKREIINSAELME
                     EIYMKIDEKHTQCVTKYKKTR*"
     gene            941279..941476
                     /gene="senS"
                     /locus_tag="BSU_08810"
                     /old_locus_tag="BSU08810"
     CDS             complement(941503..942954)
                     /gene="katA"
                     /locus_tag="BSU_08820"
                     /old_locus_tag="BSU08820"
                     /EC_number="1.11.1.6"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12029044, 12486061, 16535198, 22194458, 27935957"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12029044, 12486061,
                     16535198, 22194458, 27935957; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="vegetative catalase 1"
                     /protein_id="NP_388762.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08820"
                     /db_xref="EnsemblGenomes-Tr:CAB12710"
                     /db_xref="GOA:P26901"
                     /db_xref="InterPro:IPR002226"
                     /db_xref="InterPro:IPR010582"
                     /db_xref="InterPro:IPR011614"
                     /db_xref="InterPro:IPR018028"
                     /db_xref="InterPro:IPR020835"
                     /db_xref="InterPro:IPR024708"
                     /db_xref="InterPro:IPR024711"
                     /db_xref="InterPro:IPR037060"
                     /db_xref="SubtiList:BG10849"
                     /db_xref="UniProtKB/Swiss-Prot:P26901"
                     /translation="MSSNKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFN
                     RERVPERVVHAKGAGAHGYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSA
                     DTVRDPRGFAVKFYTEEGNYDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTA
                     VWDFWSLSPESLHQVTILMSDRGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTE
                     QGVKNLDVNTAAKIAGENPDYHTEDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPF
                     DVTKVWSQKDYPLIEVGRMVLDRNPENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRL
                     FAYHDAHRYRVGANHQALPINRARNKVNNYQRDGQMRFDDNGGGSVYYEPNSFGGPKE
                     SPEDKQAAYPVQGIADSVSYDHYDHYTQAGDLYRLMSEDERTRLVENIVNAMKPVEKE
                     EIKLRQIEHFYKADPEYGKRVAEGLGLPIKKDS*"
     gene            complement(941503..942954)
                     /gene="katA"
                     /locus_tag="BSU_08820"
                     /old_locus_tag="BSU08820"
     downshifts      complement(941513)
                     /Source="Nicolas_upshifts"
                     /id="D450"
                     /incds=0
                     /nref=221
                     /ntot=261
                     /MaxReadThrough="1.32399"
                     /MaxDrop="8.8938"
                     /score="25.1548262"
                     /energy="-8.3"
                     /TU="NA"
                     /idTUdmin="U688"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    942931..942937
                     /Source="Nicolas_upshift_promotors"
                     /id="U687"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.382617382617383"
                     /psig="0.528471528471528"
                     /xcortree=1222
                     /SigmaFactorBS="tgagttttgattatctccaaccggagcgccccagctAGTTGT
                     CagtttatttgaactCATGTTATCACCTCTTGGAAtttataagaacataatatcatct
                     c"
                     /listShort="S309, ssuB, ssuA, ssuC, ssuD, ygaN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    942952..942971
                     /Source="Nicolas_upshift_promotors"
                     /id="U687"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.382617382617383"
                     /psig="0.528471528471528"
                     /xcortree=1222
                     /SigmaFactorBS="tgagttttgattatctccaaccggagcgccccagctAGTTGT
                     CagtttatttgaactCATGTTATCACCTCTTGGAAtttataagaacataatatcatct
                     c"
                     /listShort="S309, ssuB, ssuA, ssuC, ssuD, ygaN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        942955
                     /Source="Nicolas_upshifts"
                     /id="U687"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.382617382617383"
                     /psig="0.528471528471528"
                     /xcortree=1222
                     /SigmaFactorBS="tgagttttgattatctccaaccggagcgccccagctAGTTGT
                     CagtttatttgaactCATGTTATCACCTCTTGGAAtttataagaacataatatcatct
                     c"
                     /listShort="S309, ssuB, ssuA, ssuC, ssuD, ygaN"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(942972..942991)
                     /Source="Nicolas_upshift_promotors"
                     /id="U688"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig=1
                     /xcortree=1533
                     /SigmaFactorBS="attaatagagataactattttataataattataaaataaTAT
                     TGACTttttacttagagaTGATATTATGTTCTTATAAAttccaagaggtgataacatg
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       942977..943306
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_961009_961338"
                     /HighExp="S8, C30, S7, S6, BT, C90, B36, S4, S5, S1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.528"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S309"
     upshifts        complement(942991)
                     /Source="Nicolas_upshifts"
                     /id="U688"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig=1
                     /xcortree=1533
                     /SigmaFactorBS="attaatagagataactattttataataattataaaataaTAT
                     TGACTttttacttagagaTGATATTATGTTCTTATAAAttccaagaggtgataacatg
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(943005..943012)
                     /Source="Nicolas_upshift_promotors"
                     /id="U688"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.99000999000999"
                     /psig=1
                     /xcortree=1533
                     /SigmaFactorBS="attaatagagataactattttataataattataaaataaTAT
                     TGACTttttacttagagaTGATATTATGTTCTTATAAAttccaagaggtgataacatg
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(943050..943068)
                     /Source="Nicolas_upshift_promotors"
                     /id="U689"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.351648351648352"
                     /psig="0.602397602397602"
                     /xcortree=647
                     /SigmaFactorBS="gaaaaattatttctccaaaaattattaagtgtcataaaaagc
                     tgttacaacaaggtttttcaacaatTTCGATACTATATATCGATtaatagagataact
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(943075)
                     /Source="Nicolas_upshifts"
                     /id="U689"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.351648351648352"
                     /psig="0.602397602397602"
                     /xcortree=647
                     /SigmaFactorBS="gaaaaattatttctccaaaaattattaagtgtcataaaaagc
                     tgttacaacaaggtttttcaacaatTTCGATACTATATATCGATtaatagagataact
                     a"
                     /listShort="katA"
                     /GFF_Attribute="listLong"
     downshifts      943263
                     /Source="Nicolas_upshifts"
                     /id="D451"
                     /incds=0
                     /nref=9
                     /ntot=21
                     /MaxReadThrough="5.89897"
                     /MaxDrop="4.66837"
                     /score="39.0049465"
                     /energy="-19.7"
                     /TU="U687"
                     /idTUdmin="U686"
                     /TUdmin=1936
                     /isTUend="FALSE"
     CDS             943362..944129
                     /gene="ssuB"
                     /locus_tag="BSU_08830"
                     /old_locus_tag="BSU08830"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9782504, 11390694, 16513748,
                     16885442; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter
                     (ATP-bindingprotein)"
                     /protein_id="NP_388763.3"
                     /db_xref="EnsemblGenomes-Gn:BSU08830"
                     /db_xref="EnsemblGenomes-Tr:CAB12711"
                     /db_xref="GOA:P97027"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR017875"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12232"
                     /db_xref="UniProtKB/Swiss-Prot:P97027"
                     /translation="MAVTISIKEKAFVQEGRKNTVLENIELSIAPGEFLTLIGPSGCG
                     KSTLLKIIAGLDSEYDGSVEINGRSVTAPGIQQGFIFQEHRLFPWLTVEQNIAADLNL
                     KDPKVKQKVDELIEIVRLKGSEKAYPRELSGGMSQRVAIARALLREPEVLLLDEPFGA
                     LDAFTRKHLQDVLLDIWRKKKTTMILVTHDIDESVYLGNELAILKAKPGKIHKLMPIH
                     LAYPRNRTTPDFQAIRQRVLSEFEKTEDLEYAEGSGI*"
     gene            943362..944129
                     /gene="ssuB"
                     /locus_tag="BSU_08830"
                     /old_locus_tag="BSU08830"
     CDS             944147..945145
                     /gene="ssuA"
                     /locus_tag="BSU_08840"
                     /old_locus_tag="BSU08840"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9782504, 11390694, 16513748,
                     16885442; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter (binding
                     lipoprotein)"
                     /protein_id="NP_388764.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08840"
                     /db_xref="EnsemblGenomes-Tr:CAB12712"
                     /db_xref="GOA:P40400"
                     /db_xref="InterPro:IPR001638"
                     /db_xref="InterPro:IPR010067"
                     /db_xref="InterPro:IPR015168"
                     /db_xref="SubtiList:BG10656"
                     /db_xref="UniProtKB/Swiss-Prot:P40400"
                     /translation="MKKGLIVLVAVIFLLAGCGANGASGDHKQLKEIRIGIQQSLSPL
                     LIAKEKGWFEDAFEKEGIKVKWVEFQSGPPQFEGLAADKLDFSQVGNSPVIAGQAAGI
                     DFKEIGLSQDGLKANGILVNQNSGIQDVKGLKGKKIAVAKGSSGFDFLYKALDQVGLS
                     ANDVTIIQLQPDEAASAFENGSVDAWSIWEPYLSLETMKHGAKILVNGESTDLYSPGF
                     TLVRTKFSEEHPDEVVRFLKVFNKAVVWQKEHLDEAADLYSDIKDLDKKVVENVLKNT
                     EPLNEIISDDIVKAQQETADFQFRTKAIDKKIDVKDVVDNTFIKKALEEHSSGGDQ*"
     gene            944147..945145
                     /gene="ssuA"
                     /locus_tag="BSU_08840"
                     /old_locus_tag="BSU08840"
     CDS             945142..945972
                     /gene="ssuC"
                     /locus_tag="BSU_08850"
                     /old_locus_tag="BSU08850"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11390694, 15849754, 16513748, 16850406, 16885442,
                     9782504"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11390694, 15849754,
                     16513748, 16850406, 16885442, 9782504; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter (permease)"
                     /protein_id="NP_388765.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08850"
                     /db_xref="EnsemblGenomes-Tr:CAB12713"
                     /db_xref="GOA:P40401"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10657"
                     /db_xref="UniProtKB/Swiss-Prot:P40401"
                     /translation="MMKAEAAGSLPKTNAEAVRKKPGRKRYGWMKGLLLPAVIIAIWQ
                     VIGGLGVVSATVLPTPVTIVLTFKELILSGELFGHLQISIYRAALGFLLGAGLGLMIG
                     ILAGFSKRTELYLDPSLQMLRTVPHLAVTPLFILWFGFDEVSKILLIALGAFFPVYIN
                     TFNGIRGVDAKLFEVARVLEFKWHQQISKVILPAALPNILLGIRLSLGIAWLGLVVAE
                     LMGSSSGVGYMIMDARQFSQTNKVFAGIIIFAVVGKLTDSFVRLLERKLLKWRNSYEG
                     *"
     gene            945142..945972
                     /gene="ssuC"
                     /locus_tag="BSU_08850"
                     /old_locus_tag="BSU08850"
     CDS             945995..947125
                     /gene="ssuD"
                     /locus_tag="BSU_08860"
                     /old_locus_tag="BSU08860"
                     /EC_number="1.14.14.5"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9782504, 11390694, 16513748, 16885442"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9782504, 11390694,
                     16513748, 16885442; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="FMNH2-dependent aliphatic sulfonate
                     monooxygenase"
                     /protein_id="NP_388766.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08860"
                     /db_xref="EnsemblGenomes-Tr:CAB12714"
                     /db_xref="GOA:P40402"
                     /db_xref="InterPro:IPR011251"
                     /db_xref="InterPro:IPR019911"
                     /db_xref="InterPro:IPR036661"
                     /db_xref="SubtiList:BG10658"
                     /db_xref="UniProtKB/Swiss-Prot:P40402"
                     /translation="MEILWFIPTHGDARYLGSESDGRTADHLYFKQVAQAADRLGYTG
                     VLLPTGRSCEDPWLTASALAGETKDLKFLVAVRPGLMQPSLAARMTSTLDRISDGRLL
                     INVVAGGDPYELAGDGLFISHDERYEATDEFLTVWRRLLQGETVSYEGKHIKVENSNL
                     LFPPQQEPHPPIYFGGSSQAGIEAAAKHTDVYLTWGEPPEQVKEKIERVKKQAAKEGR
                     SVRFGIRLHVIARETEQEAWEAAERLISHLDDDTIAKAQAALSRYDSSGQQRMAVLHQ
                     GDRTKLEISPNLWAGIGLVRGGAGTALVGDPQTIADRIAEYQALGIESFIFSGYPHLE
                     EAYYFAELVFPLLPFENDRTRKLQNKRGEAVGNTYFVKEKNA*"
     gene            945995..947125
                     /gene="ssuD"
                     /locus_tag="BSU_08860"
                     /old_locus_tag="BSU08860"
     misc_feature    947152..947171
                     /Source="Nicolas_upshift_promotors"
                     /id="U690"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.994005994005994"
                     /xcortree=1467
                     /SigmaFactorBS="ttattttgtcaaagagaaaaatgcatgagtttaactaaaata
                     cagccccccgaaCATGGTATGATATTCAAAAAaagggggctttttttctgaaaacatt
                     g"
                     /listShort="ygaN, S310"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        947158
                     /Source="Nicolas_upshifts"
                     /id="U690"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.994005994005994"
                     /xcortree=1467
                     /SigmaFactorBS="ttattttgtcaaagagaaaaatgcatgagtttaactaaaata
                     cagccccccgaaCATGGTATGATATTCAAAAAaagggggctttttttctgaaaacatt
                     g"
                     /listShort="ygaN, S310"
                     /GFF_Attribute="listLong"
     CDS             947229..947765
                     /gene="ygaN"
                     /locus_tag="BSU_08870"
                     /old_locus_tag="BSU08870"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12193636, 16513748;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfur-related oxidoreductase"
                     /protein_id="NP_388767.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08870"
                     /db_xref="EnsemblGenomes-Tr:CAB12715"
                     /db_xref="SubtiList:BG12233"
                     /db_xref="UniProtKB/Swiss-Prot:P97028"
                     /translation="MLSACGHSKQMEIKAADISDLEKNRMDVAASQAFTAEAVNIGEG
                     ISSADMYIEHYQKGKLVERFGPVRADYSEEKTDTIQFVYFENEEGEGKNKHTTIHFGI
                     VDKQGTIAADSSVKRDDSTTQEMTQNISSPEPITFEKPALIGSSIRGTDETMHTSEHK
                     KELIKHQDALLYYVELHH*"
     gene            947229..947765
                     /gene="ygaN"
                     /locus_tag="BSU_08870"
                     /old_locus_tag="BSU08870"
     S_feature       947766..947836
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_965798_965868"
                     /HighExp="B36, BT, B60, Etha, S5, Heat, S2, BMM, S4, S3"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.25357200000000002"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S310"
     promotor_-35    947806..947813
                     /Source="Nicolas_upshift_promotors"
                     /id="U691"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.999000999001"
                     /xcortree=664
                     /SigmaFactorBS="caggccgtctgttttacaaagcggtatgCTTGCTTTtttgaa
                     tggtgaaTGATACATTTTAAATCGTAAcaatttcgatttaaagggaggctatgtgact
                     t"
                     /listShort="rpsNB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    947827..947846
                     /Source="Nicolas_upshift_promotors"
                     /id="U691"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.999000999001"
                     /xcortree=664
                     /SigmaFactorBS="caggccgtctgttttacaaagcggtatgCTTGCTTTtttgaa
                     tggtgaaTGATACATTTTAAATCGTAAcaatttcgatttaaagggaggctatgtgact
                     t"
                     /listShort="rpsNB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        947838
                     /Source="Nicolas_upshifts"
                     /id="U691"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.718281718281718"
                     /psig="0.999000999001"
                     /xcortree=664
                     /SigmaFactorBS="caggccgtctgttttacaaagcggtatgCTTGCTTTtttgaa
                     tggtgaaTGATACATTTTAAATCGTAAcaatttcgatttaaagggaggctatgtgact
                     t"
                     /listShort="rpsNB"
                     /GFF_Attribute="listLong"
     CDS             947877..948146
                     /gene="rpsNB"
                     /locus_tag="BSU_08880"
                     /old_locus_tag="BSU08880"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12904577, 17163968,
                     19648245, 20208344, 27561249; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosomal protein S14"
                     /protein_id="NP_388768.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08880"
                     /db_xref="EnsemblGenomes-Tr:CAB12716"
                     /db_xref="GOA:O31587"
                     /db_xref="InterPro:IPR001209"
                     /db_xref="InterPro:IPR018271"
                     /db_xref="InterPro:IPR023036"
                     /db_xref="SubtiList:BG13085"
                     /db_xref="UniProtKB/Swiss-Prot:O31587"
                     /translation="MAKKSKVAKELKRQQLVEQYAGIRRELKEKGDYEALSKLPRDSA
                     PGRLHNRCMVTGRPRAYMRKFKMSRIAFRELAHKGQIPGVKKASW*"
     gene            947877..948146
                     /gene="rpsNB"
                     /locus_tag="BSU_08880"
                     /old_locus_tag="BSU08880"
     promotor_-35    947949..947953
                     /Source="Nicolas_upshift_promotors"
                     /id="U692"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.62037962037962"
                     /psig="0.020979020979021"
                     /xcortree=654
                     /SigmaFactorBS="aatacgctggtattagaCGCGAgttgaaggaaaaaggagatt
                     acGAGGCACTCAGCAAGCTgccaagagattcagcaccgggaaggcttcacaaccgctg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    947976..947992
                     /Source="Nicolas_upshift_promotors"
                     /id="U692"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.62037962037962"
                     /psig="0.020979020979021"
                     /xcortree=654
                     /SigmaFactorBS="aatacgctggtattagaCGCGAgttgaaggaaaaaggagatt
                     acGAGGCACTCAGCAAGCTgccaagagattcagcaccgggaaggcttcacaaccgctg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        947992
                     /Source="Nicolas_upshifts"
                     /id="U692"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.62037962037962"
                     /psig="0.020979020979021"
                     /xcortree=654
                     /SigmaFactorBS="aatacgctggtattagaCGCGAgttgaaggaaaaaggagatt
                     acGAGGCACTCAGCAAGCTgccaagagattcagcaccgggaaggcttcacaaccgctg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      948133
                     /Source="Nicolas_upshifts"
                     /id="D452"
                     /incds=0
                     /nref=41
                     /ntot=70
                     /MaxReadThrough="3.14088"
                     /MaxDrop="6.23701"
                     /score="18.4402235"
                     /energy="-10.1"
                     /TU="U692"
                     /idTUdmin="U691"
                     /TUdmin="-13"
                     /isTUend="TRUE"
     CDS             complement(948164..948637)
                     /gene="ygaO"
                     /locus_tag="BSU_08890"
                     /old_locus_tag="BSU08890"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388769.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08890"
                     /db_xref="EnsemblGenomes-Tr:CAB12717"
                     /db_xref="GOA:P97029"
                     /db_xref="SubtiList:BG12234"
                     /db_xref="UniProtKB/Swiss-Prot:P97029"
                     /translation="MSMKTKAAFHLVLFGLACWALISYFEASEGIASFFGTKSGGMVF
                     DLNLTPFILFVAASAVYLYLQKKSRPARKQLLLPDEFEEQDEREQMMTAKACRASYIA
                     VYFSLPAAAVLLIFYPLFQSRIPFFPIIIVFIIMIIQHLSYVISFKKNEKNSGAL*"
     gene            complement(948164..948637)
                     /gene="ygaO"
                     /locus_tag="BSU_08890"
                     /old_locus_tag="BSU08890"
     downshifts      complement(948200)
                     /Source="Nicolas_upshifts"
                     /id="D453"
                     /incds=0
                     /nref=105
                     /ntot=235
                     /MaxReadThrough="1.59724"
                     /MaxDrop="4.17785"
                     /score="7.33161195"
                     /energy="-10.1"
                     /TU="NA"
                     /idTUdmin="U693"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(948639..948839)
                     /gene="ygzD"
                     /locus_tag="BSU_08899"
                     /old_locus_tag="BSU08899"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative HTH-type transcriptional regulator"
                     /protein_id="YP_003097697.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08899"
                     /db_xref="EnsemblGenomes-Tr:CAX52584"
                     /db_xref="GOA:C0H3X9"
                     /db_xref="InterPro:IPR001387"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3X9"
                     /translation="MKNKVKELRARFGYSQEKLGETVGVTRQTVAAIEKGDYVPSLLL
                     ALKICKAFSMKMEDVFWLEEEN*"
     gene            complement(948639..948839)
                     /gene="ygzD"
                     /locus_tag="BSU_08899"
                     /old_locus_tag="BSU08899"
     promotor_-10    complement(948868..948887)
                     /Source="Nicolas_upshift_promotors"
                     /id="U693"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.626373626373626"
                     /psig="0.996003996003996"
                     /xcortree=1780
                     /SigmaFactorBS="aaaaaaagttatctttttgtaaagttgttaagttcCATTTAC
                     AtaatgttaagtaTACTATACAATATAATCAATcgagattgtgaaggggacagacgtc
                     a"
                     /listShort="ygzD, ygaO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(948882)
                     /Source="Nicolas_upshifts"
                     /id="U693"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.626373626373626"
                     /psig="0.996003996003996"
                     /xcortree=1780
                     /SigmaFactorBS="aaaaaaagttatctttttgtaaagttgttaagttcCATTTAC
                     AtaatgttaagtaTACTATACAATATAATCAATcgagattgtgaaggggacagacgtc
                     a"
                     /listShort="ygzD, ygaO"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(948900..948907)
                     /Source="Nicolas_upshift_promotors"
                     /id="U693"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.626373626373626"
                     /psig="0.996003996003996"
                     /xcortree=1780
                     /SigmaFactorBS="aaaaaaagttatctttttgtaaagttgttaagttcCATTTAC
                     AtaatgttaagtaTACTATACAATATAATCAATcgagattgtgaaggggacagacgtc
                     a"
                     /listShort="ygzD, ygaO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    948963..948968
                     /Source="Nicolas_upshift_promotors"
                     /id="U694"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.35964035964036"
                     /psig=1
                     /xcortree=2589
                     /SigmaFactorBS="tacaaaaagataactttttttcgacaaaatttttatattccC
                     TTGACgaaaaataaataaACATGTAATATAAAAAAAGTcagagcggtactgttgctga
                     c"
                     /listShort="trnSL-Gly1, S311, S312, yhbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    948982..949001
                     /Source="Nicolas_upshift_promotors"
                     /id="U694"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.35964035964036"
                     /psig=1
                     /xcortree=2589
                     /SigmaFactorBS="tacaaaaagataactttttttcgacaaaatttttatattccC
                     TTGACgaaaaataaataaACATGTAATATAAAAAAAGTcagagcggtactgttgctga
                     c"
                     /listShort="trnSL-Gly1, S311, S312, yhbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        948982
                     /Source="Nicolas_upshifts"
                     /id="U694"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.35964035964036"
                     /psig=1
                     /xcortree=2589
                     /SigmaFactorBS="tacaaaaagataactttttttcgacaaaatttttatattccC
                     TTGACgaaaaataaataaACATGTAATATAAAAAAAGTcagagcggtactgttgctga
                     c"
                     /listShort="trnSL-Gly1, S311, S312, yhbA"
                     /GFF_Attribute="listLong"
     tRNA            949033..949106
                     /gene="trnSL-Gly1"
                     /locus_tag="BSU_tRNA_82"
                     /product="tRNA-Gly"
                     /inference="profile:tRNAscan:1.23"
                     /note="transfer RNA-Gly(TCC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            949033..949106
                     /gene="trnSL-Gly1"
                     /locus_tag="BSU_tRNA_82"
     S_feature       949107..949289
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_967139_967321"
                     /HighExp="G135, G180, Oxctl, G150, Paraq, H2O2, C30, HPh,
                     LPh, LBGexp"
                     /AntisenseName="yhzB"
                     /AntisenseCor="0.42714037049296899"
                     /AntisenseRegPval="-12.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S311"
     CDS             complement(949197..949820)
                     /gene="yhzB"
                     /locus_tag="BSU_08900"
                     /old_locus_tag="BSU08900"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388771.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08900"
                     /db_xref="EnsemblGenomes-Tr:CAB12718"
                     /db_xref="InterPro:IPR020825"
                     /db_xref="SubtiList:BG13086"
                     /db_xref="UniProtKB/Swiss-Prot:O31588"
                     /translation="MNIKLDSVITERAAGLHAAAVIYENIEVGSSPQMLKGRLRLFQE
                     SLFFDYADGGISDESFVKEWQKLFKQLNPSFEGETTPMEDMLVPISKEQFMESKDSAH
                     DTIDFFALKYSLPIMIYDAGKLHEPVRISLGEKENILLFSDENGIFGDFKNSVNHYPV
                     SNETKNMLQIIFFPPSIEKSSAVNLLSSLTKMFEQIHGGTHTVHWLT*"
     gene            complement(949197..949820)
                     /gene="yhzB"
                     /locus_tag="BSU_08900"
                     /old_locus_tag="BSU08900"
     downshifts      complement(949212)
                     /Source="Nicolas_upshifts"
                     /id="D454"
                     /incds=0
                     /nref=25
                     /ntot=165
                     /MaxReadThrough="2.50849"
                     /MaxDrop="4.62652"
                     /score="-8.52782087"
                     /energy="-7.9"
                     /TU="NA"
                     /idTUdmin="U695"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      949246
                     /Source="Nicolas_upshifts"
                     /id="D455"
                     /incds=0
                     /nref=1
                     /ntot=88
                     /MaxReadThrough="4.14204"
                     /MaxDrop="2.36986"
                     /score="16.0836885"
                     /energy="-15.5"
                     /TU="U694"
                     /idTUdmin="U692"
                     /TUdmin=1078
                     /isTUend="FALSE"
     S_feature       949291..949902
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_967323_967934"
                     /HighExp="G180, G135, G150, Paraq, Oxctl, H2O2, LBGstat,
                     Cold, LBGexp, S6"
                     /AntisenseName="yhzB"
                     /AntisenseCor="0.28959466335762701"
                     /AntisenseRegPval="-5.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S312"
     promotor_-10    complement(949844..949863)
                     /Source="Nicolas_upshift_promotors"
                     /id="U695"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.631368631368631"
                     /psig="0.999000999001"
                     /xcortree=1953
                     /SigmaFactorBS="tctttgagctgataaacgttcatgttttgcacagcctccttT
                     CTTTGTGataaaacgacacaGCGTTTATAATAGGTTGATAtcacgtaactggagtgaa
                     t"
                     /listShort="yhzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(949865)
                     /Source="Nicolas_upshifts"
                     /id="U695"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.631368631368631"
                     /psig="0.999000999001"
                     /xcortree=1953
                     /SigmaFactorBS="tctttgagctgataaacgttcatgttttgcacagcctccttT
                     CTTTGTGataaaacgacacaGCGTTTATAATAGGTTGATAtcacgtaactggagtgaa
                     t"
                     /listShort="yhzB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(949877..949884)
                     /Source="Nicolas_upshift_promotors"
                     /id="U695"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.631368631368631"
                     /psig="0.999000999001"
                     /xcortree=1953
                     /SigmaFactorBS="tctttgagctgataaacgttcatgttttgcacagcctccttT
                     CTTTGTGataaaacgacacaGCGTTTATAATAGGTTGATAtcacgtaactggagtgaa
                     t"
                     /listShort="yhzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             949903..951063
                     /gene="queG"
                     /locus_tag="BSU_08910"
                     /old_locus_tag="BSU08910"
                     /EC_number="1.17.99.-"
                     /function="10.3: tRNA and rRNA base modification"
                     /experiment="publication(s) with functional evidences,
                     PMID:8830270, 21502530, 26230193, 27638883, 28128549"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8830270, 21502530,
                     26230193, 27638883, 28128549; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase"
                     /protein_id="NP_388772.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08910"
                     /db_xref="EnsemblGenomes-Tr:CAB12719"
                     /db_xref="GOA:P97030"
                     /db_xref="InterPro:IPR004155"
                     /db_xref="InterPro:IPR004453"
                     /db_xref="InterPro:IPR013542"
                     /db_xref="InterPro:IPR016024"
                     /db_xref="InterPro:IPR017896"
                     /db_xref="InterPro:IPR017900"
                     /db_xref="PDB:5D08"
                     /db_xref="PDB:5D0A"
                     /db_xref="PDB:5D0B"
                     /db_xref="PDB:5T8Y"
                     /db_xref="SubtiList:BG12236"
                     /db_xref="UniProtKB/Swiss-Prot:P97030"
                     /translation="MNVYQLKEELIEYAKSIGVDKIGFTTADTFDSLKDRLILQESLG
                     YLSGFEEPDIEKRVTPKLLLPKAKSIVAIALAYPSRMKDAPRSTRTERRGIFCRASWG
                     KDYHDVLREKLDLLEDFLKSKHEDIRTKSMVDTGELSDRAVAERAGIGFSAKNCMITT
                     PEYGSYVYLAEMITNIPFEPDVPIEDMCGSCTKCLDACPTGALVNPGQLNAQRCISFL
                     TQTKGFLPDEFRTKIGNRLYGCDTCQTVCPLNKGKDFHLHPEMEPDPEIAKPLLKPLL
                     AISNREFKEKFGHVSGSWRGKKPIQRNAILALAHFKDASALPELTELMHKDPRPVIRG
                     TAAWAIGKIGDPAYAEELEKALEKEKDEEAKLEIEKGIELLKASGMTKQGLS*"
     gene            949903..951063
                     /gene="queG"
                     /locus_tag="BSU_08910"
                     /old_locus_tag="BSU08910"
     downshifts      951072
                     /Source="Nicolas_upshifts"
                     /id="D456"
                     /incds=0
                     /nref=9
                     /ntot=123
                     /MaxReadThrough="5.29174"
                     /MaxDrop="3.3561"
                     /score="33.0421154"
                     /energy="-15.1"
                     /TU="NA"
                     /idTUdmin="U694"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_feature    951089..951101
                     /Source="Nicolas_upshift_promotors"
                     /id="U696"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.909090909090909"
                     /psig="0.909090909090909"
                     /xcortree=1143
                     /SigmaFactorBS="tcaggcatgactaaacaaggcctgtcctgacatacgtataga
                     gcagaaggaaaaaACACTTGAGATCAtccaagtgttttttctctataaaaaagtatgg
                     c"
                     /listShort="yhbB, cspR"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        951094
                     /Source="Nicolas_upshifts"
                     /id="U696"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.909090909090909"
                     /psig="0.909090909090909"
                     /xcortree=1143
                     /SigmaFactorBS="tcaggcatgactaaacaaggcctgtcctgacatacgtataga
                     gcagaaggaaaaaACACTTGAGATCAtccaagtgttttttctctataaaaaagtatgg
                     c"
                     /listShort="yhbB, cspR"
                     /GFF_Attribute="listLong"
     CDS             951130..952065
                     /gene="yhbB"
                     /locus_tag="BSU_08920"
                     /old_locus_tag="BSU08920"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388773.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08920"
                     /db_xref="EnsemblGenomes-Tr:CAB12720"
                     /db_xref="InterPro:IPR024301"
                     /db_xref="SubtiList:BG11811"
                     /db_xref="UniProtKB/Swiss-Prot:O31589"
                     /translation="MAGGVSLKYILEQLAEERLGFLVNGHAMRQESQVGDLKVMERKK
                     KLLEKRKVDIIKAKAKAVINHVRVEDDGTTCLSYTIHYEYVCKEQDDSLYIEEHIEER
                     MAFLYDHILISDQEIAKKPAGFHEGTSIIDYSEAEEEREAFGRAFQYDRLGAVQYAEK
                     FWNKRNPAYKNFSDNCTNFISQCLHAGGAPMRGHPNRGSGWWMKQSSWSYSWTVAHSM
                     KMYLSNSKAGLRAVRVKSAEELMPGDVICYDFEGDGRFNHTTIVVAKDKGNMPLVNAQ
                     TYDSRMRYWSYEDSTAYTPSIRYAFFHIVDDTTKE*"
     gene            951130..952065
                     /gene="yhbB"
                     /locus_tag="BSU_08920"
                     /old_locus_tag="BSU08920"
     downshifts      complement(951148)
                     /Source="Nicolas_upshifts"
                     /id="D457"
                     /incds=0
                     /nref=2
                     /ntot=17
                     /MaxReadThrough="2.06584"
                     /MaxDrop="3.33944"
                     /score="-3.35852865"
                     /energy="-6"
                     /TU="NA"
                     /idTUdmin="U695"
                     /TUdmin="-1936"
                     /isTUend="FALSE"
     promotor_-35    952049..952052
                     /Source="Nicolas_upshift_promotors"
                     /id="U697"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig=1
                     /xcortree=2502
                     /SigmaFactorBS="acacgccgtcaatacgatatgccttttttcatatcgttgatg
                     ATACgacaaaagagtaattAATGTTATAATGATGGGCGGataagaaaaacagaggtga
                     a"
                     /listShort="cspR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        952067
                     /Source="Nicolas_upshifts"
                     /id="U697"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig=1
                     /xcortree=2502
                     /SigmaFactorBS="acacgccgtcaatacgatatgccttttttcatatcgttgatg
                     ATACgacaaaagagtaattAATGTTATAATGATGGGCGGataagaaaaacagaggtga
                     a"
                     /listShort="cspR"
                     /GFF_Attribute="listLong"
     promotor_-10    952068..952087
                     /Source="Nicolas_upshift_promotors"
                     /id="U697"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.692307692307692"
                     /psig=1
                     /xcortree=2502
                     /SigmaFactorBS="acacgccgtcaatacgatatgccttttttcatatcgttgatg
                     ATACgacaaaagagtaattAATGTTATAATGATGGGCGGataagaaaaacagaggtga
                     a"
                     /listShort="cspR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             952103..952585
                     /gene="trmL"
                     /locus_tag="BSU_08930"
                     /old_locus_tag="BSU08930"
                     /EC_number="2.1.1.207"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12682299, 20855540; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="NP_388774.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08930"
                     /db_xref="EnsemblGenomes-Tr:CAB12721"
                     /db_xref="GOA:O31590"
                     /db_xref="InterPro:IPR001537"
                     /db_xref="InterPro:IPR016914"
                     /db_xref="InterPro:IPR029026"
                     /db_xref="InterPro:IPR029028"
                     /db_xref="SubtiList:BG11802"
                     /db_xref="UniProtKB/Swiss-Prot:O31590"
                     /translation="MNIVALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTD
                     DKMLKRAGLDYWEFVNVVYHDSLEELFEAYKKGKFFFITKFGQQPHTSFDYTDLDEDY
                     FFVFGRETSGLPKDLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQNYRDLK
                     *"
     gene            952103..952585
                     /gene="trmL"
                     /locus_tag="BSU_08930"
                     /old_locus_tag="BSU08930"
     downshifts      952568
                     /Source="Nicolas_upshifts"
                     /id="D458"
                     /incds=0
                     /nref=203
                     /ntot=259
                     /MaxReadThrough="4.6846"
                     /MaxDrop="7.03587"
                     /score="33.0421154"
                     /energy="-15.1"
                     /TU="NA"
                     /idTUdmin="U696"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             952635..953351
                     /gene="yhbD"
                     /locus_tag="BSU_08940"
                     /old_locus_tag="BSU08940"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sporulation-related protein"
                     /protein_id="NP_388775.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08940"
                     /db_xref="EnsemblGenomes-Tr:CAB12722"
                     /db_xref="InterPro:IPR025063"
                     /db_xref="SubtiList:BG12237"
                     /db_xref="UniProtKB/Swiss-Prot:P97032"
                     /translation="MLCFVFGLNNVTVLCYNVPIKGAGLMEEQLISKKELLERTSISY
                     GQLYRWKRKNLIPEEWFIRKSTFTGQETFFPREEILKRISMIQKMKENLSLDEMREML
                     SPKMKDVSMTADELLHKGLVSRPALEAYSEDGGSPVFSSSDLLSLFVLEGLLQSGNVS
                     LAEAKMAAEVLKKHDTEEIEKQTELIVLRKLGVTTCFIAAAADSILFESSVKVVERVD
                     LLKASEELKTTFMQEGHQWM*"
     gene            952635..953351
                     /gene="yhbD"
                     /locus_tag="BSU_08940"
                     /old_locus_tag="BSU08940"
     promotor_-35    952655..952662
                     /Source="Nicolas_upshift_promotors"
                     /id="U698"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig=1
                     /xcortree=2394
                     /SigmaFactorBS="tttttgcggatgttgaaatgctttgtttcgtttttggGCTTA
                     ACAacgtaacagtgttaTGTTACAATGTACCCATCAAaggagctggacttatggaaga
                     a"
                     /listShort="yhbD, yhbE, yhbF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    952677..952696
                     /Source="Nicolas_upshift_promotors"
                     /id="U698"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig=1
                     /xcortree=2394
                     /SigmaFactorBS="tttttgcggatgttgaaatgctttgtttcgtttttggGCTTA
                     ACAacgtaacagtgttaTGTTACAATGTACCCATCAAaggagctggacttatggaaga
                     a"
                     /listShort="yhbD, yhbE, yhbF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        952678
                     /Source="Nicolas_upshifts"
                     /id="U698"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.761238761238761"
                     /psig=1
                     /xcortree=2394
                     /SigmaFactorBS="tttttgcggatgttgaaatgctttgtttcgtttttggGCTTA
                     ACAacgtaacagtgttaTGTTACAATGTACCCATCAAaggagctggacttatggaaga
                     a"
                     /listShort="yhbD, yhbE, yhbF"
                     /GFF_Attribute="listLong"
     CDS             953342..954055
                     /gene="yhbE"
                     /locus_tag="BSU_08950"
                     /old_locus_tag="BSU08950"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12562816, 20617312; Product type
                     cp:cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein involved in sporulation"
                     /protein_id="NP_388776.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08950"
                     /db_xref="EnsemblGenomes-Tr:CAB12723"
                     /db_xref="InterPro:IPR007607"
                     /db_xref="SubtiList:BG10802"
                     /db_xref="UniProtKB/Swiss-Prot:P39132"
                     /translation="MDVVEKLVINGSGSSKGGTFQSVEINGSGTVAGDVECDTFSFNG
                     NGKADGSVKAKAVTISGSGKIHGDVEAESIRMNGTGFIQGEVSAKQLKIAGSSTFGGT
                     VKADGIDISGKAVMEADCETETFQSEGKCKISGLLNADQVIIKLSAGESYAREIGCRH
                     LQVTCRKGMLTLLRLMPQPVLTAELIEGDVIELTNTKAKTVRGNKVIIGPDCQIETVE
                     YSGDYTCDPSASVETSTKL*"
     gene            953342..954055
                     /gene="yhbE"
                     /locus_tag="BSU_08950"
                     /old_locus_tag="BSU08950"
     CDS             954067..954774
                     /gene="yhbF"
                     /locus_tag="BSU_08960"
                     /old_locus_tag="BSU08960"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 12562816, 20617312; Product type
                     cp:cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein involved in sporulation"
                     /protein_id="NP_388777.2"
                     /db_xref="EnsemblGenomes-Gn:BSU08960"
                     /db_xref="EnsemblGenomes-Tr:CAB12724"
                     /db_xref="SubtiList:BG10803"
                     /db_xref="UniProtKB/Swiss-Prot:P39133"
                     /translation="METTKLGNLKLYGAGHAAGGAYHNVSIKGEGIVGEGLSAVGCRI
                     YGTGLFLGKAETERLRVLGESECKGDLTAGKINIYGTMKVSGSLQFDRFNLKGQTEIG
                     GNMTGESCDVKGKLSVIGDCETEMFHVTGCVDVSGLLNSGEIKLGLSHDISHVQEIGG
                     TTITVKRRASFFSRKKGKLIADVIEGDRVYLENTEAAVVRGKEVIIGPGCSIGTIEYE
                     YKCECDPHSQIKEKTKL*"
     gene            954067..954774
                     /gene="yhbF"
                     /locus_tag="BSU_08960"
                     /old_locus_tag="BSU08960"
     downshifts      954658
                     /Source="Nicolas_upshifts"
                     /id="D459"
                     /incds=1
                     /nref=1
                     /ntot=127
                     /MaxReadThrough="4.34704"
                     /MaxDrop="2.64409"
                     /score="45.497414"
                     /energy="-15.3"
                     /TU="U698"
                     /idTUdmin="U698"
                     /TUdmin="-110"
                     /isTUend="FALSE"
     downshifts      954702
                     /Source="Nicolas_upshifts"
                     /id="D460"
                     /incds=1
                     /nref=2
                     /ntot=35
                     /MaxReadThrough="4.02504"
                     /MaxDrop="3.21894"
                     /score="45.497414"
                     /energy="-15.3"
                     /TU="U698"
                     /idTUdmin="U698"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     downshifts      954768
                     /Source="Nicolas_upshifts"
                     /id="D461"
                     /incds=0
                     /nref=2
                     /ntot=41
                     /MaxReadThrough="1.06365"
                     /MaxDrop="3.74046"
                     /score="45.497414"
                     /energy="-15.3"
                     /TU="NA"
                     /idTUdmin="U698"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(954801..954976)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_972833_973008_c"
                     /HighExp="M9-stat, BC, S4, T0.30H, LoTm, Lbstat, S2, BT,
                     HiOs, Lbtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99846699999999999"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S313"
     downshifts      complement(954844)
                     /Source="Nicolas_upshifts"
                     /id="D462"
                     /incds=0
                     /nref=63
                     /ntot=220
                     /MaxReadThrough="3.38525"
                     /MaxDrop="4.33005"
                     /score="18.2489321"
                     /energy="-13.5"
                     /TU="U699"
                     /idTUdmin="U699"
                     /TUdmin="-198"
                     /isTUend="FALSE"
     promotor_-10    complement(954968..954987)
                     /Source="Nicolas_upshift_promotors"
                     /id="U699"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.998001998001998"
                     /xcortree=456
                     /SigmaFactorBS="tttcttaaaaataaagatactcatacaTCGTTGACaaggcag
                     actgcgaCCGTTCATAATAAAGAAAAAtacagaatcatccagactcggacagcacgga
                     a"
                     /listShort="S313"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(954976)
                     /Source="Nicolas_upshifts"
                     /id="U699"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.998001998001998"
                     /xcortree=456
                     /SigmaFactorBS="tttcttaaaaataaagatactcatacaTCGTTGACaaggcag
                     actgcgaCCGTTCATAATAAAGAAAAAtacagaatcatccagactcggacagcacgga
                     a"
                     /listShort="S313"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(955002..955009)
                     /Source="Nicolas_upshift_promotors"
                     /id="U699"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.653346653346653"
                     /psig="0.998001998001998"
                     /xcortree=456
                     /SigmaFactorBS="tttcttaaaaataaagatactcatacaTCGTTGACaaggcag
                     actgcgaCCGTTCATAATAAAGAAAAAtacagaatcatccagactcggacagcacgga
                     a"
                     /listShort="S313"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    955041..955046
                     /Source="Nicolas_upshift_promotors"
                     /id="U700"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1094
                     /SigmaFactorBS="gtcaacgatgtatgagtatctttatttttaagaaaccaaAGC
                     ATGtatcacgagatggcgGCATAGATTGTATCAAAGTaccttatttgcatagtgtatc
                     a"
                     /listShort="prkA, S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    955062..955080
                     /Source="Nicolas_upshift_promotors"
                     /id="U700"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1094
                     /SigmaFactorBS="gtcaacgatgtatgagtatctttatttttaagaaaccaaAGC
                     ATGtatcacgagatggcgGCATAGATTGTATCAAAGTaccttatttgcatagtgtatc
                     a"
                     /listShort="prkA, S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        955062
                     /Source="Nicolas_upshifts"
                     /id="U700"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1094
                     /SigmaFactorBS="gtcaacgatgtatgagtatctttatttttaagaaaccaaAGC
                     ATGtatcacgagatggcgGCATAGATTGTATCAAAGTaccttatttgcatagtgtatc
                     a"
                     /listShort="prkA, S314, yhbH"
                     /GFF_Attribute="listLong"
     CDS             955124..957019
                     /gene="prkA"
                     /locus_tag="BSU_08970"
                     /old_locus_tag="BSU08970"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8626065, 12662922, 25983726, 27806131"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8626065, 12662922,
                     25983726, 27806131; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine protein kinase (involved in sporulation)"
                     /protein_id="NP_388778.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08970"
                     /db_xref="EnsemblGenomes-Tr:CAB12725"
                     /db_xref="GOA:P39134"
                     /db_xref="InterPro:IPR010650"
                     /db_xref="InterPro:IPR013153"
                     /db_xref="InterPro:IPR016230"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10804"
                     /db_xref="UniProtKB/Swiss-Prot:P39134"
                     /translation="MDILKKIEKYREEEQRLKWEGTFADYLEIIKENPMVAQSAHSRV
                     FNMIKDSGIEEIDGRKKYSFFDRELFGLEESLERLVEEYFHPAAKRLDVRKRILLLMG
                     PVSGGKSTLVTMLKKGLEAYTLTDNGAVYAIKGCPMHEDPLHLIPHHLRDDFYREYGI
                     RIEGSLSPLNVMRLEEEYGGRIEDVKVERIFFSEDKRTGIGTFSPSDPKSQDIADLTG
                     SIDFSTIAEYGSESDPRAYRFDGELNKANRGMMEFQEMLKCDEKFLWHLLSLTQEGNF
                     KAGRFALISADELIVAHTNETEYRSFISNKKNEALHSRIIVMPVPYNLKVSEEERIYE
                     KMIAESDVADVHIAPHTLKVAAMFSILTRLKEPKRSDIDLVKKMRLYDGESVEGYNSV
                     DVEDMKKEYNDEGMSGIDPRYVINRISSTIIRKNMESINSLDVLRSLKEGLDQHPSIS
                     SEDRERYLNFISAARKEYDDIAKKEVQKAFVYSYEESAKTLMDNYLDNVEAYCNKNKL
                     RDPLTGEEMNPDEKLMRSIEEQIGISENAKKAFREEILIRISAYARKGKRFDYNSHER
                     LREAIQKKLFADLKDVVKITTSTKTPDEQQLKKVNEVVARLIDEHGYNSTSANELLKY
                     VGSLLNR*"
     gene            955124..957019
                     /gene="prkA"
                     /locus_tag="BSU_08970"
                     /old_locus_tag="BSU08970"
     promotor_no_box 955566..955666
                     /Source="Nicolas_upshift_promotors"
                     /id="U701"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.31968031968032"
                     /psig="0.31968031968032"
                     /xcortree=684
                     /SigmaFactorBS="atcatttacgcgatgacttttacagagaatacggcattagaa
                     tagaaggaagtctttctcctttaaatgtcatgaggctggaggaagagtacggaggaag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        955626
                     /Source="Nicolas_upshifts"
                     /id="U701"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.31968031968032"
                     /psig="0.31968031968032"
                     /xcortree=684
                     /SigmaFactorBS="atcatttacgcgatgacttttacagagaatacggcattagaa
                     tagaaggaagtctttctcctttaaatgtcatgaggctggaggaagagtacggaggaag
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      955692
                     /Source="Nicolas_upshifts"
                     /id="D463"
                     /incds=1
                     /nref=5
                     /ntot=18
                     /MaxReadThrough="7.33384"
                     /MaxDrop="5.65132"
                     /score="45.497414"
                     /energy="-15.3"
                     /TU="U700"
                     /idTUdmin="U701"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      957012
                     /Source="Nicolas_upshifts"
                     /id="D464"
                     /incds=0
                     /nref=11
                     /ntot=57
                     /MaxReadThrough="6.19375"
                     /MaxDrop="4.381"
                     /score="-0.497429548"
                     /energy="-10.6"
                     /TU="U700"
                     /idTUdmin="U703"
                     /TUdmin="-528"
                     /isTUend="FALSE"
     promotor_-35    957076..957081
                     /Source="Nicolas_upshift_promotors"
                     /id="U702"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1058
                     /SigmaFactorBS="agggcgggttattttgtcccattttctaaatagtttGTCAAT
                     taaacgtgcatatgtGCATATGATGAATATAAATcttttcaaaagacttgtttcataa
                     t"
                     /listShort="S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    957097..957115
                     /Source="Nicolas_upshift_promotors"
                     /id="U702"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1058
                     /SigmaFactorBS="agggcgggttattttgtcccattttctaaatagtttGTCAAT
                     taaacgtgcatatgtGCATATGATGAATATAAATcttttcaaaagacttgtttcataa
                     t"
                     /listShort="S314, yhbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       957100..957198
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_975132_975230"
                     /HighExp="S6, S7, S5, S8, S4, S3, BT, LoTm, B36, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigEF"
                     /TUshortPSig="0.971, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S314"
     upshifts        957100
                     /Source="Nicolas_upshifts"
                     /id="U702"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1058
                     /SigmaFactorBS="agggcgggttattttgtcccattttctaaatagtttGTCAAT
                     taaacgtgcatatgtGCATATGATGAATATAAATcttttcaaaagacttgtttcataa
                     t"
                     /listShort="S314, yhbH"
                     /GFF_Attribute="listLong"
     CDS             957199..958377
                     /gene="yhbH"
                     /locus_tag="BSU_08980"
                     /old_locus_tag="BSU08980"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:11988534, 12662922, 14523133, 25983726"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11988534, 12662922,
                     14523133, 25983726; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="factor involved in shape determination"
                     /protein_id="NP_388779.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08980"
                     /db_xref="EnsemblGenomes-Tr:CAB12726"
                     /db_xref="InterPro:IPR006698"
                     /db_xref="InterPro:IPR014230"
                     /db_xref="SubtiList:BG11238"
                     /db_xref="UniProtKB/Swiss-Prot:P45742"
                     /translation="MSQNDSGHFLISEENWSLHRKGFDDQQRHQKKVQEAIKNNLPDL
                     VTEESIIMSNGKDVVKIPIRSLDEYKIRYNYDKNKHVGQGDGESQVGDVVARDGSDKK
                     QGPGKGQGAGDQAGEDYYEAEVSLMDLEEALFKELELPNLQQKERDNIIHTDIEFNDI
                     RKTGLTGNIDKKRTMMSAFKRNAMSGKPSFYPIYPEDLKYKTWNDITKPESKAVVLAM
                     MDTSGSMGVWEKYMARSFFFWMTRFLRTKYETVEIEFIAHHTEARVVSEEDFFSKGES
                     GGTICSSVYRKSLELIDEKYNPARYNIYPFHFSDGDNLTSDNARCVKLVNDIMKKANL
                     FCYGEVNQYNRHSTLMSAYKNVKDEKFKYYILKQKSDVFQALKNFFRNEESGVSHQFS
                     *"
     gene            957199..958377
                     /gene="yhbH"
                     /locus_tag="BSU_08980"
                     /old_locus_tag="BSU08980"
     promotor_-35    957397..957400
                     /Source="Nicolas_upshift_promotors"
                     /id="U703"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.367632367632368"
                     /psig="0.985014985014985"
                     /xcortree=615
                     /SigmaFactorBS="atggaaaagatgtagtgaagatcccaatccgttcacttGATG
                     agtataaaatccgtTATAACTATGATAAAAATAAacatgtagggcaaggagacggcga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    957415..957434
                     /Source="Nicolas_upshift_promotors"
                     /id="U703"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.367632367632368"
                     /psig="0.985014985014985"
                     /xcortree=615
                     /SigmaFactorBS="atggaaaagatgtagtgaagatcccaatccgttcacttGATG
                     agtataaaatccgtTATAACTATGATAAAAATAAacatgtagggcaaggagacggcga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        957419
                     /Source="Nicolas_upshifts"
                     /id="U703"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.367632367632368"
                     /psig="0.985014985014985"
                     /xcortree=615
                     /SigmaFactorBS="atggaaaagatgtagtgaagatcccaatccgttcacttGATG
                     agtataaaatccgtTATAACTATGATAAAAATAAacatgtagggcaaggagacggcga
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      complement(957660)
                     /Source="Nicolas_upshifts"
                     /id="D465"
                     /incds=1
                     /nref=1
                     /ntot=23
                     /MaxReadThrough="2.79078"
                     /MaxDrop="2.94521"
                     /score="-7.1109433"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U699"
                     /TUdmin="-3014"
                     /isTUend="FALSE"
     downshifts      958356
                     /Source="Nicolas_upshifts"
                     /id="D466"
                     /incds=0
                     /nref=63
                     /ntot=180
                     /MaxReadThrough="1.86673"
                     /MaxDrop="8.19565"
                     /score="27.3980811"
                     /energy="-5.6"
                     /TU="NA"
                     /idTUdmin="U702"
                     /TUdmin=2
                     /isTUend="TRUE"
     promotor_-35    958464..958471
                     /Source="Nicolas_upshift_promotors"
                     /id="U704"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig="0.996003996003996"
                     /xcortree=2450
                     /SigmaFactorBS="cgcttgcgaaaaaaatacgggagaaaaagaaatttttcCTTT
                     GACAaatcttctttcattTATTAATATTTTATCTTGTGaactattattgaggaatgag
                     g"
                     /listShort="yhbI, yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    958486..958505
                     /Source="Nicolas_upshift_promotors"
                     /id="U704"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig="0.996003996003996"
                     /xcortree=2450
                     /SigmaFactorBS="cgcttgcgaaaaaaatacgggagaaaaagaaatttttcCTTT
                     GACAaatcttctttcattTATTAATATTTTATCTTGTGaactattattgaggaatgag
                     g"
                     /listShort="yhbI, yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        958486
                     /Source="Nicolas_upshifts"
                     /id="U704"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.754245754245754"
                     /psig="0.996003996003996"
                     /xcortree=2450
                     /SigmaFactorBS="cgcttgcgaaaaaaatacgggagaaaaagaaatttttcCTTT
                     GACAaatcttctttcattTATTAATATTTTATCTTGTGaactattattgaggaatgag
                     g"
                     /listShort="yhbI, yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
     CDS             958537..959001
                     /gene="yhbI"
                     /locus_tag="BSU_08990"
                     /old_locus_tag="BSU08990"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 20011599; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (MarR
                     family)induced by acid stress"
                     /protein_id="NP_388780.1"
                     /db_xref="EnsemblGenomes-Gn:BSU08990"
                     /db_xref="EnsemblGenomes-Tr:CAB12727"
                     /db_xref="GOA:O31592"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13003"
                     /db_xref="UniProtKB/Swiss-Prot:O31592"
                     /translation="MTESERALLTFEQLFDTSRAIYKKQKKILEIVLEPFDITVLQYL
                     LMFKIHQSGSTPLSKLAMSLDLKPASVTRMTDILYKRQLMNRYDSPDDRRIVMIQLTE
                     EGEELIEKAAVQYAKMGAGLYQKLDTSQLQYLRKLAGSLTKLAEGCSEKSGN*"
     gene            958537..959001
                     /gene="yhbI"
                     /locus_tag="BSU_08990"
                     /old_locus_tag="BSU08990"
     promotor_-35    958826..958832
                     /Source="Nicolas_upshift_promotors"
                     /id="U705"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=270
                     /SigmaFactorBS="cagtccggatgaccgccgtatcgtcaTGATTCAgttaaccga
                     agaggGGGAAGAACTGATAGAAAAagccgctgtgcaatatgcaaaaatgggtgctggc
                     t"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    958847..958865
                     /Source="Nicolas_upshift_promotors"
                     /id="U705"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=270
                     /SigmaFactorBS="cagtccggatgaccgccgtatcgtcaTGATTCAgttaaccga
                     agaggGGGAAGAACTGATAGAAAAagccgctgtgcaatatgcaaaaatgggtgctggc
                     t"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        958860
                     /Source="Nicolas_upshifts"
                     /id="U705"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.94005994005994"
                     /psig="0.94005994005994"
                     /xcortree=270
                     /SigmaFactorBS="cagtccggatgaccgccgtatcgtcaTGATTCAgttaaccga
                     agaggGGGAAGAACTGATAGAAAAagccgctgtgcaatatgcaaaaatgggtgctggc
                     t"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
     promotor_-35    959010..959016
                     /Source="Nicolas_upshift_promotors"
                     /id="U706"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=808
                     /SigmaFactorBS="gctgttcagaaaaaagcggtaattaaaaacttctCACATATt
                     ttcaccagctttCCGCAAAATGATagaggatgaaacgaaaggagaaaacaaaatgaac
                     a"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    959030..959041
                     /Source="Nicolas_upshift_promotors"
                     /id="U706"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=808
                     /SigmaFactorBS="gctgttcagaaaaaagcggtaattaaaaacttctCACATATt
                     ttcaccagctttCCGCAAAATGATagaggatgaaacgaaaggagaaaacaaaatgaac
                     a"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        959036
                     /Source="Nicolas_upshifts"
                     /id="U706"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.976023976023976"
                     /psig="0.976023976023976"
                     /xcortree=808
                     /SigmaFactorBS="gctgttcagaaaaaagcggtaattaaaaacttctCACATATt
                     ttcaccagctttCCGCAAAATGATagaggatgaaacgaaaggagaaaacaaaatgaac
                     a"
                     /listShort="yhbJ, yhcA, yhcB, yhcC"
                     /GFF_Attribute="listLong"
     CDS             959037..959702
                     /gene="yhbJ"
                     /locus_tag="BSU_09000"
                     /old_locus_tag="BSU09000"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     20011599; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane fusion protein; putative
                     exporter subunit (benzoate transcriptome)"
                     /protein_id="NP_388781.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09000"
                     /db_xref="EnsemblGenomes-Tr:CAB12728"
                     /db_xref="GOA:O31593"
                     /db_xref="InterPro:IPR011053"
                     /db_xref="SubtiList:BG13004"
                     /db_xref="UniProtKB/Swiss-Prot:O31593"
                     /translation="MIEDETKGENKMNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTN
                     YVKTDEAKVAGDMAAITAPAAGKVSDWDLDEGKTVKKGDTVAKIKGEQTVDVKSIMDG
                     TIVKNEVKNGQTVQAGTTIAQTIDMDNLYITANIKETDIADIEVGNSVDVVVDGDPDT
                     TFDGTVEEIGYATNSTFDMLPSTNSSGNYTKVTQKVPVKISIKNPSDKVLPGMNASVK
                     ISE*"
     gene            959037..959702
                     /gene="yhbJ"
                     /locus_tag="BSU_09000"
                     /old_locus_tag="BSU09000"
     CDS             959743..961341
                     /gene="yhcA"
                     /locus_tag="BSU_09010"
                     /old_locus_tag="BSU09010"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     20011599; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exporter (benzoate transcriptome)"
                     /protein_id="NP_388782.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09010"
                     /db_xref="EnsemblGenomes-Tr:CAB12729"
                     /db_xref="GOA:P54585"
                     /db_xref="InterPro:IPR004638"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG11579"
                     /db_xref="UniProtKB/Swiss-Prot:P54585"
                     /translation="MATGKEKNAKNPMSLLIVLMAGLFLAILNQTLLNVAMPHLMTEF
                     GVSATTIQWLTTGYMLVNGVLIPLSAFLITRFGQRSLFLVAMFCFTLGTLVCGIAPNF
                     STMLIGRLIQAVGGGILQPLVMTTILLIFPPESRGKGMGIFGLAMMFAPAVGPTLSGW
                     IIEHYTWRIMFYGLVPIGAIVIIVAFFIFKNMVEPQKIKLDTLGAILSIVGFASLLYG
                     VSEAGSDGWTDPIVLSTVIIGAIAIVAFVVQQLRHDDPMLDFRVFKYDIFSLSSVINI
                     IITVALYTGMFLLPIYLQNLVGFTALQSGLLLLPGAIVMLIMSPISGILFDKFGPRPL
                     AIIGLLVTVVTTYQYTQLTIDTPYTHIMLIYSIRAFGMSLLMMPVMTAGMNQLPARLN
                     SHGTAMSNTLRQISGSIGTSLITTIYTNRTTFHYSQIADKTSTADPNFLHAFQNAVSN
                     LMVNMNVSYDTAKTYVYSHIYKHASLDSNVMGINDAFMWATLFCVAGLILSIFLRDVR
                     KDKLRKKKKEELSLLPAPKEAKES*"
     gene            959743..961341
                     /gene="yhcA"
                     /locus_tag="BSU_09010"
                     /old_locus_tag="BSU09010"
     CDS             961364..961894
                     /gene="yhcB"
                     /locus_tag="BSU_09020"
                     /old_locus_tag="BSU09020"
                     /EC_number="1.6.5.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15754243, 18041955,
                     17951395, 19665595, 20011599; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:quinone oxidoreductase associated to
                     benzoate stress"
                     /protein_id="NP_388783.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09020"
                     /db_xref="EnsemblGenomes-Tr:CAB12730"
                     /db_xref="GOA:P54586"
                     /db_xref="InterPro:IPR005025"
                     /db_xref="InterPro:IPR008254"
                     /db_xref="InterPro:IPR029039"
                     /db_xref="SubtiList:BG11580"
                     /db_xref="UniProtKB/Swiss-Prot:P54586"
                     /translation="MKIYVVYDSEGEHTKVLAEAIAEGARENDAAEVFIDHVDQADIR
                     KLKDMDAIIWGCPGHFGTISSGLKTWIDRLGYLWAEGELINKVGAVFCTTATTHGGLE
                     MTMHNLITPMFHQGMIVVGLPGNVPENALYGSYYGAGVTCPVDSDELMSEEGIQLGRA
                     LGRRVSQVTGNLTAGQ*"
     gene            961364..961894
                     /gene="yhcB"
                     /locus_tag="BSU_09020"
                     /old_locus_tag="BSU09020"
     CDS             961907..962281
                     /gene="yhcC"
                     /locus_tag="BSU_09030"
                     /old_locus_tag="BSU09030"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical membrane protein"
                     /protein_id="NP_388784.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09030"
                     /db_xref="EnsemblGenomes-Tr:CAB12731"
                     /db_xref="GOA:P54587"
                     /db_xref="SubtiList:BG11581"
                     /db_xref="UniProtKB/Swiss-Prot:P54587"
                     /translation="MAIIIAIIAAVIVIAALITFNVRNASPGPEKQEATDRIAPPEEE
                     KNEAHYPAEARAAEHTPSVVKNDSPKEKRDTMGDDIYRQALQKFKHSDEVHAEEEVTE
                     ESDKMQDRSYRDALLSMKNKKK*"
     gene            961907..962281
                     /gene="yhcC"
                     /locus_tag="BSU_09030"
                     /old_locus_tag="BSU09030"
     downshifts      962270
                     /Source="Nicolas_upshifts"
                     /id="D467"
                     /incds=0
                     /nref=32
                     /ntot=145
                     /MaxReadThrough="1.78742"
                     /MaxDrop="5.9171"
                     /score="13.777309"
                     /energy="-14.4"
                     /TU="NA"
                     /idTUdmin="U704"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             962281..962436
                     /gene="yhcD"
                     /locus_tag="BSU_09040"
                     /old_locus_tag="BSU09040"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388785.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09040"
                     /db_xref="EnsemblGenomes-Tr:CAB12732"
                     /db_xref="SubtiList:BG11582"
                     /db_xref="UniProtKB/Swiss-Prot:P54588"
                     /translation="MKKANPFTHAGLPFLLFPSIMFLSNKSMEYVVFHLDLVYYVTHT
                     PRIFSGR*"
     gene            962281..962436
                     /gene="yhcD"
                     /locus_tag="BSU_09040"
                     /old_locus_tag="BSU09040"
     promotor_-35    962371..962377
                     /Source="Nicolas_upshift_promotors"
                     /id="U707"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.571428571428571"
                     /psig=1
                     /xcortree=2541
                     /SigmaFactorBS="tgtttttatcaaataaatccatggaatatGTTGTATtccacc
                     ttgatctaGTGTACTATGTTACTCATACaccgaggattttttccgggaggtaaagaca
                     t"
                     /listShort="yhcE, yhcF, yhcG, yhcH, yhcI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    962392..962411
                     /Source="Nicolas_upshift_promotors"
                     /id="U707"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.571428571428571"
                     /psig=1
                     /xcortree=2541
                     /SigmaFactorBS="tgtttttatcaaataaatccatggaatatGTTGTATtccacc
                     ttgatctaGTGTACTATGTTACTCATACaccgaggattttttccgggaggtaaagaca
                     t"
                     /listShort="yhcE, yhcF, yhcG, yhcH, yhcI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        962402
                     /Source="Nicolas_upshifts"
                     /id="U707"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.571428571428571"
                     /psig=1
                     /xcortree=2541
                     /SigmaFactorBS="tgtttttatcaaataaatccatggaatatGTTGTATtccacc
                     ttgatctaGTGTACTATGTTACTCATACaccgaggattttttccgggaggtaaagaca
                     t"
                     /listShort="yhcE, yhcF, yhcG, yhcH, yhcI"
                     /GFF_Attribute="listLong"
     CDS             962441..963202
                     /gene="yhcE"
                     /locus_tag="BSU_09050"
                     /old_locus_tag="BSU09050"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane orphan protein"
                     /protein_id="NP_388786.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09050"
                     /db_xref="EnsemblGenomes-Tr:CAB12733"
                     /db_xref="GOA:P54589"
                     /db_xref="SubtiList:BG11583"
                     /db_xref="UniProtKB/Swiss-Prot:P54589"
                     /translation="MNSFLGLLKKDIKLSRMWLLVWICGIIFLLGTGHIIASRTKEPL
                     VIFGFFVAVAFFLLFLSPVFVFYHLRKEGKSQLWLYNPNGGLWLFSSKLAASLLYQFV
                     IQLALTAYGIWMYHMLSVKNLLEHQVDITSTVALLNMYGLISSLDMSVTVIVFWTVFH
                     SLRNWRGMRWAAMVLLVAMWLFFDEYIISPLVESQKHFWPVTVYCNFDFHFHNVWRLE
                     LKPIHLSVLGFPIAIVITFLLLIMASKLLDRKVEV*"
     gene            962441..963202
                     /gene="yhcE"
                     /locus_tag="BSU_09050"
                     /old_locus_tag="BSU09050"
     promotor_-10    complement(962754..962772)
                     /Source="Nicolas_upshift_promotors"
                     /id="U708"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1187
                     /SigmaFactorBS="tatcaacttgatgctccagcagattttttacagagAGCATAt
                     gatacatccatatgCCATAGGCTGTTAATGCCAactgaatcacaaattgatagagcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(962768)
                     /Source="Nicolas_upshifts"
                     /id="U708"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1187
                     /SigmaFactorBS="tatcaacttgatgctccagcagattttttacagagAGCATAt
                     gatacatccatatgCCATAGGCTGTTAATGCCAactgaatcacaaattgatagagcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(962788..962793)
                     /Source="Nicolas_upshift_promotors"
                     /id="U708"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1187
                     /SigmaFactorBS="tatcaacttgatgctccagcagattttttacagagAGCATAt
                     gatacatccatatgCCATAGGCTGTTAATGCCAactgaatcacaaattgatagagcaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             963205..963570
                     /gene="yhcF"
                     /locus_tag="BSU_09060"
                     /old_locus_tag="BSU09060"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (GntR
                     family)"
                     /protein_id="NP_388787.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09060"
                     /db_xref="EnsemblGenomes-Tr:CAB12734"
                     /db_xref="GOA:P54590"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG11584"
                     /db_xref="UniProtKB/Swiss-Prot:P54590"
                     /translation="MDNQFQSSKPIYLQIADQIFYRLVRKELLPGDKLPSVREMAIQT
                     KVNPNTIQRTYSEMERLGIVETRRGQGTFIAEKAEIVDELKDKLTREVLEGFVKQMKE
                     LGLTKEEMLEGIKTFTEGG*"
     gene            963205..963570
                     /gene="yhcF"
                     /locus_tag="BSU_09060"
                     /old_locus_tag="BSU09060"
     CDS             963572..964270
                     /gene="yhcG"
                     /locus_tag="BSU_09070"
                     /old_locus_tag="BSU09070"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15870467; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter ATP-binding protein"
                     /protein_id="NP_388788.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09070"
                     /db_xref="EnsemblGenomes-Tr:CAB12735"
                     /db_xref="GOA:P54591"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11585"
                     /db_xref="UniProtKB/Swiss-Prot:P54591"
                     /translation="MEIKLEHVSKKYGRHTAVNDVSITLSSGRIYGLIGPNGSGKSTT
                     LKMMAGLLFPTSGFVKVDEEQVTREMVRQTAYLTELDMFYPHFTVKDMVNFYQSQFPD
                     FHTEQVYKLLNEMQLNPEKKIKKLSKGNRGRLKIVLALARRADVILLDEPFSGLDPMV
                     RDSIVNSLVSYIDFEQQIVVIATHEIDEIETLLDEVIILANGEKVAQREVEDIREQEG
                     MSVLQWFKSKMEVC*"
     gene            963572..964270
                     /gene="yhcG"
                     /locus_tag="BSU_09070"
                     /old_locus_tag="BSU09070"
     CDS             964287..965204
                     /gene="yhcH"
                     /locus_tag="BSU_09080"
                     /old_locus_tag="BSU09080"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7476193, 15870467;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388789.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09080"
                     /db_xref="EnsemblGenomes-Tr:CAB12736"
                     /db_xref="GOA:P54592"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11586"
                     /db_xref="UniProtKB/Swiss-Prot:P54592"
                     /translation="MKTVLELKNVTKNIRGRTIIDDLSFTIREGEVFGFLGPNGAGKT
                     TTIRMMVGLMKLSKGDVLICGQSITKEYAKAIKHIGAIVENPELYKFLSGYKNLQQFA
                     RMVKGVTKEKIDEVVELVGLTDRIHDKVKTYSLGMRQRLGLAQCLLHDPKVLILDEPT
                     NGLDPAGIREIRDHLKKLTRERGMAVIVSSHLLSEMELMCDRIAILQKGKLIDIQNVK
                     DENIDENDTYFFQVEQPSEAATVLNQYDLLSKTNGVEIKLAKEEVPAVIELLVMQQIR
                     IYEVKVITKSLEDRFLEMTGETKEEVQHA*"
     gene            964287..965204
                     /gene="yhcH"
                     /locus_tag="BSU_09080"
                     /old_locus_tag="BSU09080"
     CDS             965197..966138
                     /gene="yhcI"
                     /locus_tag="BSU_09090"
                     /old_locus_tag="BSU09090"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 15870467,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (permease)"
                     /protein_id="NP_388790.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09090"
                     /db_xref="EnsemblGenomes-Tr:CAB12737"
                     /db_xref="GOA:P54593"
                     /db_xref="InterPro:IPR032688"
                     /db_xref="SubtiList:BG11587"
                     /db_xref="UniProtKB/Swiss-Prot:P54593"
                     /translation="MLNLIYNEWLKIFSRAGTWVMIGILGLTMVGFAFLANHFSAGES
                     NSHWKQELQAQNAELKKEIKEDPSLKDGYKETITLNDYRIEHNIPSDTGYTVWSYVTD
                     SANFTILTGLFTIIIAAGIVANEFNWGTIKLLMIRPLSRFQILMSKYITVLLFGLLLL
                     LILFIGSTLLGLIFFGTGGETAANIHLIYKDGHVIEQNMMGHLATTYLSESVSALMVA
                     TMAFMLSAVFRNSSLAVGFSIFLLVAGTTATAFIAAKFDWAKYILFANVDLTQYVDGT
                     PLIKGMTMTFSLVMLAIYFIIFLLLAFGIFMKRDIAN*"
     gene            965197..966138
                     /gene="yhcI"
                     /locus_tag="BSU_09090"
                     /old_locus_tag="BSU09090"
     downshifts      966120
                     /Source="Nicolas_upshifts"
                     /id="D468"
                     /incds=0
                     /nref=43
                     /ntot=186
                     /MaxReadThrough="2.67567"
                     /MaxDrop="4.46232"
                     /score="20.0218504"
                     /energy="-13.6"
                     /TU="NA"
                     /idTUdmin="U707"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(966230..966433)
                     /gene="cspB"
                     /locus_tag="BSU_09100"
                     /old_locus_tag="BSU09100"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:12493834, 16352840, 22128343, 25851716"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12493834, 16352840,
                     22128343, 25851716; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="major cold-shock protein, RNA helicase
                     co-factor, RNA co-chaperone"
                     /protein_id="NP_388791.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09100"
                     /db_xref="EnsemblGenomes-Tr:CAB12738"
                     /db_xref="GOA:P32081"
                     /db_xref="InterPro:IPR002059"
                     /db_xref="InterPro:IPR011129"
                     /db_xref="InterPro:IPR012156"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR019844"
                     /db_xref="PDB:1CSP"
                     /db_xref="PDB:1CSQ"
                     /db_xref="PDB:1NMF"
                     /db_xref="PDB:1NMG"
                     /db_xref="PDB:2ES2"
                     /db_xref="PDB:2F52"
                     /db_xref="PDB:2I5L"
                     /db_xref="PDB:2I5M"
                     /db_xref="PDB:3PF4"
                     /db_xref="PDB:3PF5"
                     /db_xref="SubtiList:BG10824"
                     /db_xref="UniProtKB/Swiss-Prot:P32081"
                     /translation="MLEGKVKWFNSEKGFGFIEVEGQDDVFVHFSAIQGEGFKTLEEG
                     QAVSFEIVEGNRGPQAANVTKEA*"
     gene            complement(966230..966433)
                     /gene="cspB"
                     /locus_tag="BSU_09100"
                     /old_locus_tag="BSU09100"
     downshifts      complement(966244)
                     /Source="Nicolas_upshifts"
                     /id="D469"
                     /incds=0
                     /nref=169
                     /ntot=281
                     /MaxReadThrough="5.28215"
                     /MaxDrop="9.14889"
                     /score="33.2405587"
                     /energy="-13.1"
                     /TU="U710"
                     /idTUdmin="U710"
                     /TUdmin="-48"
                     /isTUend="FALSE"
     S_feature       complement(966434..966561)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_984466_984593_c"
                     /HighExp="BC, C90, GM 15, BI, T-1.10H, UNK1, S1, Sw, nit,
                     G/S"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigA"
                     /TUlongPSig="0.999"
                     /label="S315"
     misc_feature    966521..966532
                     /Source="Nicolas_upshift_promotors"
                     /id="U709"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.618381618381618"
                     /psig="0.098901098901099"
                     /xcortree=713
                     /SigmaFactorBS="ttgctcttaacaaactttcaagacgaaaactcttacaaaact
                     tTCTTCTTAAAGAtagttcgaacaaaaataattacctttactctaccagtaatcttca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        966538
                     /Source="Nicolas_upshifts"
                     /id="U709"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.618381618381618"
                     /psig="0.098901098901099"
                     /xcortree=713
                     /SigmaFactorBS="ttgctcttaacaaactttcaagacgaaaactcttacaaaact
                     tTCTTCTTAAAGAtagttcgaacaaaaataattacctttactctaccagtaatcttca
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(966550..966569)
                     /Source="Nicolas_upshift_promotors"
                     /id="U710"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.32967032967033"
                     /psig=1
                     /xcortree=2182
                     /SigmaFactorBS="tatggtattttccgaaaaaaatttcaataagcaGTTGTTttt
                     tctgaagattACTGGTAGAGTAAAGGTAATtatttttgttcgaactatctttaagaag
                     a"
                     /listShort="S315, cspB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(966561)
                     /Source="Nicolas_upshifts"
                     /id="U710"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.32967032967033"
                     /psig=1
                     /xcortree=2182
                     /SigmaFactorBS="tatggtattttccgaaaaaaatttcaataagcaGTTGTTttt
                     tctgaagattACTGGTAGAGTAAAGGTAATtatttttgttcgaactatctttaagaag
                     a"
                     /listShort="S315, cspB"
                     /GFF_Attribute="listLong"
     S_feature       complement(966563..967701)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_984595_985733_c"
                     /HighExp="C30, G180, G150, Oxctl, G135, Paraq, HPh, LPh,
                     dia0, Lbexp"
                     /AntisenseName="yhcJ"
                     /AntisenseCor="0.25433958616302499"
                     /AntisenseRegPval="-4.5999999999999996"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S316"
     promotor_-35    complement(966583..966588)
                     /Source="Nicolas_upshift_promotors"
                     /id="U710"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.32967032967033"
                     /psig=1
                     /xcortree=2182
                     /SigmaFactorBS="tatggtattttccgaaaaaaatttcaataagcaGTTGTTttt
                     tctgaagattACTGGTAGAGTAAAGGTAATtatttttgttcgaactatctttaagaag
                     a"
                     /listShort="S315, cspB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    966728..966735
                     /Source="Nicolas_upshift_promotors"
                     /id="U711"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.997002997002997"
                     /xcortree=1871
                     /SigmaFactorBS="attccttcattttgggaagataagtaataggAATTGACAacc
                     ttattggatatGAGTAAGGTAAAAGTTAATcaatattacaaatgacaacgtttatcaa
                     c"
                     /listShort="S317, yhcJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    966750..966768
                     /Source="Nicolas_upshift_promotors"
                     /id="U711"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.997002997002997"
                     /xcortree=1871
                     /SigmaFactorBS="attccttcattttgggaagataagtaataggAATTGACAacc
                     ttattggatatGAGTAAGGTAAAAGTTAATcaatattacaaatgacaacgtttatcaa
                     c"
                     /listShort="S317, yhcJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        966757
                     /Source="Nicolas_upshifts"
                     /id="U711"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.997002997002997"
                     /xcortree=1871
                     /SigmaFactorBS="attccttcattttgggaagataagtaataggAATTGACAacc
                     ttattggatatGAGTAAGGTAAAAGTTAATcaatattacaaatgacaacgtttatcaa
                     c"
                     /listShort="S317, yhcJ"
                     /GFF_Attribute="listLong"
     S_feature       966758..966868
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_984790_984900"
                     /HighExp="Diami, dia15, dia5, H2O2, Salt, C90, Paraq,
                     UNK1, T-4.40H, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S317"
     CDS             966869..967699
                     /gene="yhcJ"
                     /locus_tag="BSU_09110"
                     /old_locus_tag="BSU09110"
                     /function="7: Transport and binding proteins"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (binding lipoprotein)"
                     /protein_id="NP_388792.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09110"
                     /db_xref="EnsemblGenomes-Tr:CAB12739"
                     /db_xref="GOA:P54594"
                     /db_xref="InterPro:IPR004872"
                     /db_xref="SubtiList:BG11588"
                     /db_xref="UniProtKB/Swiss-Prot:P54594"
                     /translation="MKKWLICSFVLVLLVSFTACSPSAEHESIKIGIAESDGAIWNYI
                     AQKAEEAGLDIQLIPFSDYAESDIALANKEIDANAFQTISYFQSFTEKYKLNLAPLGT
                     TYITPMGIYSKRYERIRDISRGAVVSVPDKAFDFGRALTVLQEAGLLTLKNGFNGTGS
                     VDMIKDNPRHLKLKAVRQQDAVSGADVFVMKPSEAKKAGLNPKKHTLKSGGLMSEEEM
                     NLIVVRAEDQDREALQTILELYQADDTAAFIEKEYQGDLVPAFLPLKRLSDWKNEFEH
                     *"
     gene            966869..967699
                     /gene="yhcJ"
                     /locus_tag="BSU_09110"
                     /old_locus_tag="BSU09110"
     downshifts      967658
                     /Source="Nicolas_upshifts"
                     /id="D470"
                     /incds=0
                     /nref=38
                     /ntot=203
                     /MaxReadThrough="2.83059"
                     /MaxDrop="3.90173"
                     /score="-4.94928928"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U711"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     CDS             complement(967702..968781)
                     /gene="dgcK"
                     /locus_tag="BSU_09120"
                     /old_locus_tag="BSU09120"
                     /EC_number="2.7.7.65"
                     /function="16.3: Control"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:23893111"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23893111; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="NP_388793.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09120"
                     /db_xref="EnsemblGenomes-Tr:CAB12740"
                     /db_xref="GOA:P54595"
                     /db_xref="InterPro:IPR000160"
                     /db_xref="InterPro:IPR011620"
                     /db_xref="InterPro:IPR029787"
                     /db_xref="SubtiList:BG11589"
                     /db_xref="UniProtKB/Swiss-Prot:P54595"
                     /translation="MLKELFVNLTILITFNYLFTHLFKERLVHKKDSISFQAVKGLAC
                     GLLGVILMVFGFTYQHSIIDLRNIPIMIAALYGGWVSTATALAMITAGRLLITMNTSA
                     LYSVIIICIAAIPSLIVSRRKKVQLKHAFYLLIITNSLISFSFYFLIDLHSYELHLYF
                     WIISIAGGMLSLYIIDHETNAHLLFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAA
                     DTPHFQFALIYMDIDHFKTINDQYGHHEGDQVLKELGLRLKQTIRNTDPAARIGGEEF
                     AVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDELSVTISLGAAHYPNNTEQPGSLP
                     ILADQMLYKAKETGRNRVCFSEKKE*"
     gene            complement(967702..968781)
                     /gene="dgcK"
                     /locus_tag="BSU_09120"
                     /old_locus_tag="BSU09120"
     promotor_-10    complement(968791..968810)
                     /Source="Nicolas_upshift_promotors"
                     /id="U712"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2608
                     /SigmaFactorBS="tatcaattcaagtaaaaaaaccttatataatgccttttttgt
                     TCTTTtctttcccttccatcTTTAGTACCTTATATAAGGGtgataatatttgctgaaa
                     g"
                     /listShort="yhcK, S316"
                     /listLong="S315, cspB"
                     /label="promotor_-10"
     upshifts        complement(968812)
                     /Source="Nicolas_upshifts"
                     /id="U712"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2608
                     /SigmaFactorBS="tatcaattcaagtaaaaaaaccttatataatgccttttttgt
                     TCTTTtctttcccttccatcTTTAGTACCTTATATAAGGGtgataatatttgctgaaa
                     g"
                     /listShort="yhcK, S316"
                     /listLong="S315, cspB"
     promotor_-35    complement(968826..968830)
                     /Source="Nicolas_upshift_promotors"
                     /id="U712"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2608
                     /SigmaFactorBS="tatcaattcaagtaaaaaaaccttatataatgccttttttgt
                     TCTTTtctttcccttccatcTTTAGTACCTTATATAAGGGtgataatatttgctgaaa
                     g"
                     /listShort="yhcK, S316"
                     /listLong="S315, cspB"
                     /label="promotor_-35"
     promotor_-35    968888..968895
                     /Source="Nicolas_upshift_promotors"
                     /id="U713"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig=1
                     /xcortree=1745
                     /SigmaFactorBS="tttttacttgaattgataagttaaaataattcgCACTTGACc
                     catcggaattagTGTAATATAGTAAATGAGAAaatttgaagggagagtttacctgctt
                     t"
                     /listShort="tcyP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    968909..968928
                     /Source="Nicolas_upshift_promotors"
                     /id="U713"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig=1
                     /xcortree=1745
                     /SigmaFactorBS="tttttacttgaattgataagttaaaataattcgCACTTGACc
                     catcggaattagTGTAATATAGTAAATGAGAAaatttgaagggagagtttacctgctt
                     t"
                     /listShort="tcyP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        968915
                     /Source="Nicolas_upshifts"
                     /id="U713"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig=1
                     /xcortree=1745
                     /SigmaFactorBS="tttttacttgaattgataagttaaaataattcgCACTTGACc
                     catcggaattagTGTAATATAGTAAATGAGAAaatttgaagggagagtttacctgctt
                     t"
                     /listShort="tcyP"
                     /GFF_Attribute="listLong"
     CDS             968954..970345
                     /gene="tcyP"
                     /locus_tag="BSU_09130"
                     /old_locus_tag="BSU09130"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12193636, 15262924, 15849754, 16513748, 16850406,
                     19508281"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12193636, 15262924,
                     15849754, 16513748, 16850406, 19508281; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="(sodium)-cystine symporter"
                     /protein_id="NP_388794.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09130"
                     /db_xref="EnsemblGenomes-Tr:CAB12741"
                     /db_xref="GOA:P54596"
                     /db_xref="InterPro:IPR001991"
                     /db_xref="InterPro:IPR036458"
                     /db_xref="SubtiList:BG11590"
                     /db_xref="UniProtKB/Swiss-Prot:P54596"
                     /translation="METLLVVLHVFILFLLILGLFVMQKKHVSFSKRVFTALGLGIVF
                     GFALQLIYGPTSNIVIQTADWFNIAGGGYVKLLQMVVMPLVFISILGAFTKLKLTKNL
                     GKISGLIIGILVATTAVAAAVGIASALSFDLQAIQVDQGSTELSRGQELQQKSEDMTA
                     KTLPQQIVELLPGNPFLDFTGARPTSTIAVVIFAAFLGVAFLGVKHKQPEQAETFKKL
                     VDAVYAIVMRVVTLILRLTPYGVLAIMTKTIATSDLDSILKLGMFVIASYAALITMFI
                     IHLLLLTFSGLNPVIYLKKAVPVLVFAFTSRSSAGALPLNIKTQRSMGVPEGIANFAG
                     SFGLSIGQNGCAGIYPAMLAMMIAPTVGQNPFDPVFIITVIAVVAISSFGVAGVGGGA
                     TFAALLVLSSLNMPVALAGLLISIEPLIDMGRTALNVSGSMTSGLITSKVTKEIDQGA
                     FHDQSRVIEAEEA*"
     gene            968954..970345
                     /gene="tcyP"
                     /locus_tag="BSU_09130"
                     /old_locus_tag="BSU09130"
     S_feature       complement(969981..970384)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_988013_988416_c"
                     /HighExp="S8, S6, Etha, S5, S7, S4, ferm, nit, Salt, S3"
                     /AntisenseName="tcyP"
                     /AntisenseCor="-0.40132140065468203"
                     /AntisenseRegPval="-11.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.96"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S318"
     downshifts      970324
                     /Source="Nicolas_upshifts"
                     /id="D471"
                     /incds=0
                     /nref=58
                     /ntot=164
                     /MaxReadThrough="2.37899"
                     /MaxDrop="5.34563"
                     /score="19.9118074"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U713"
                     /TUdmin="-21"
                     /isTUend="TRUE"
     CDS             complement(970385..970840)
                     /gene="yhcM"
                     /locus_tag="BSU_09140"
                     /old_locus_tag="BSU09140"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 21625606"
                     /codon_start=1
                     /transl_table=11
                     /product="expressed protein of unknown function"
                     /protein_id="NP_388795.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09140"
                     /db_xref="EnsemblGenomes-Tr:CAB12742"
                     /db_xref="SubtiList:BG11591"
                     /db_xref="UniProtKB/Swiss-Prot:P54597"
                     /translation="MLFNQRRGISPAALIIGSTMLITALSPQIRQRISGFITGQMNRR
                     NSENNTFDASNVGNMVKQAFSGSSGSSGDNQDRSQHQSQRQNGRQHQHAGQQQPQHQH
                     TQSQTRQTETAAKKRQPHYAEPIHFEQNAMNVMDDNTMMEMLEDLEPGR*"
     gene            complement(970385..970840)
                     /gene="yhcM"
                     /locus_tag="BSU_09140"
                     /old_locus_tag="BSU09140"
     promotor_-10    complement(970855..970873)
                     /Source="Nicolas_upshift_promotors"
                     /id="U714"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=733
                     /SigmaFactorBS="tttaattatgcatgcaaatctggaggaaatgctttcccggga
                     aatataaCGGTTAAtttgtctaacgaggGGGAAAATATGAATACACTgcaaaggaggg
                     a"
                     /listShort="yhcM, S318"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(970883)
                     /Source="Nicolas_upshifts"
                     /id="U714"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=733
                     /SigmaFactorBS="tttaattatgcatgcaaatctggaggaaatgctttcccggga
                     aatataaCGGTTAAtttgtctaacgaggGGGAAAATATGAATACACTgcaaaggaggg
                     a"
                     /listShort="yhcM, S318"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(970888..970894)
                     /Source="Nicolas_upshift_promotors"
                     /id="U714"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.96003996003996"
                     /psig="0.96003996003996"
                     /xcortree=733
                     /SigmaFactorBS="tttaattatgcatgcaaatctggaggaaatgctttcccggga
                     aatataaCGGTTAAtttgtctaacgaggGGGAAAATATGAATACACTgcaaaggaggg
                     a"
                     /listShort="yhcM, S318"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    970932..970938
                     /Source="Nicolas_upshift_promotors"
                     /id="U715"
                     /multdbtbs="SigF,SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=835
                     /SigmaFactorBS="tatatttcccgggaaagcatttcctccagatttgcaTGCATA
                     AttaaagccagttaGAAAAACCTATAagtaaagtgataaaggaggaattcacatgttt
                     g"
                     /listShort="yhcN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    970952..970963
                     /Source="Nicolas_upshift_promotors"
                     /id="U715"
                     /multdbtbs="SigF,SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=835
                     /SigmaFactorBS="tatatttcccgggaaagcatttcctccagatttgcaTGCATA
                     AttaaagccagttaGAAAAACCTATAagtaaagtgataaaggaggaattcacatgttt
                     g"
                     /listShort="yhcN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        970956
                     /Source="Nicolas_upshifts"
                     /id="U715"
                     /multdbtbs="SigF,SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=835
                     /SigmaFactorBS="tatatttcccgggaaagcatttcctccagatttgcaTGCATA
                     AttaaagccagttaGAAAAACCTATAagtaaagtgataaaggaggaattcacatgttt
                     g"
                     /listShort="yhcN"
                     /GFF_Attribute="listLong"
     CDS             970990..971559
                     /gene="yhcN"
                     /locus_tag="BSU_09150"
                     /old_locus_tag="BSU09150"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9611260, 28333204;
                     Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative germination lipoprotein"
                     /protein_id="NP_388796.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09150"
                     /db_xref="EnsemblGenomes-Tr:CAB12743"
                     /db_xref="GOA:P54598"
                     /db_xref="InterPro:IPR014247"
                     /db_xref="InterPro:IPR019076"
                     /db_xref="SubtiList:BG11592"
                     /db_xref="UniProtKB/Swiss-Prot:P54598"
                     /translation="MFGKKQVLASVLLIPLLMTGCGVADQGEGRRDNNDVRNVNYRNP
                     ANDDMRNVNNRDNVDNNVNDNVNNNRVNDDNNNDRKLEVADEAADKVTDLKEVKHADI
                     IVAGNQAYVAVVLTNGNKGAVENNLKKKIAKKVRSTDKNIDNVYVSANPDFVERMQGY
                     GKRIQNGDPIAGLFDEFTQTVQRVFPNAE*"
     gene            970990..971559
                     /gene="yhcN"
                     /locus_tag="BSU_09150"
                     /old_locus_tag="BSU09150"
     promotor_-35    971186..971192
                     /Source="Nicolas_upshift_promotors"
                     /id="U716"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.634365634365634"
                     /psig="0.634365634365634"
                     /xcortree=783
                     /SigmaFactorBS="gtaaacaatcgggataacgttgacaacaatgttaatgataat
                     gTCAATAAcaatcgtgtaaatGACGATAATAACaacgaccgaaaacttgaggttgctg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        971203
                     /Source="Nicolas_upshifts"
                     /id="U716"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.634365634365634"
                     /psig="0.634365634365634"
                     /xcortree=783
                     /SigmaFactorBS="gtaaacaatcgggataacgttgacaacaatgttaatgataat
                     gTCAATAAcaatcgtgtaaatGACGATAATAACaacgaccgaaaacttgaggttgctg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    971206..971217
                     /Source="Nicolas_upshift_promotors"
                     /id="U716"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.634365634365634"
                     /psig="0.634365634365634"
                     /xcortree=783
                     /SigmaFactorBS="gtaaacaatcgggataacgttgacaacaatgttaatgataat
                     gTCAATAAcaatcgtgtaaatGACGATAATAACaacgaccgaaaacttgaggttgctg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      971534
                     /Source="Nicolas_upshifts"
                     /id="D472"
                     /incds=0
                     /nref=26
                     /ntot=183
                     /MaxReadThrough="1.84697"
                     /MaxDrop="7.80159"
                     /score="33.0647397"
                     /energy="-12.9"
                     /TU="NA"
                     /idTUdmin="U715"
                     /TUdmin="-21"
                     /isTUend="TRUE"
     promotor_-35    971602..971611
                     /Source="Nicolas_upshift_promotors"
                     /id="U717"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1355
                     /SigmaFactorBS="caatttgtgcggctttttctttgcgttAATGACACACtgcga
                     actcaggcTGCATAGAGTAAAAATAAAAaggtacaagacggaccggctcagggaggga
                     g"
                     /listShort="yhcO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    971625..971644
                     /Source="Nicolas_upshift_promotors"
                     /id="U717"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1355
                     /SigmaFactorBS="caatttgtgcggctttttctttgcgttAATGACACACtgcga
                     actcaggcTGCATAGAGTAAAAATAAAAaggtacaagacggaccggctcagggaggga
                     g"
                     /listShort="yhcO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        971635
                     /Source="Nicolas_upshifts"
                     /id="U717"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1355
                     /SigmaFactorBS="caatttgtgcggctttttctttgcgttAATGACACACtgcga
                     actcaggcTGCATAGAGTAAAAATAAAAaggtacaagacggaccggctcagggaggga
                     g"
                     /listShort="yhcO"
                     /GFF_Attribute="listLong"
     CDS             971680..972648
                     /gene="yhcO"
                     /locus_tag="BSU_09165"
                     /old_locus_tag="BSU09165"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein (sporulation
                     germination island)"
                     /protein_id="NP_388797.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09165"
                     /db_xref="EnsemblGenomes-Tr:CAB12744"
                     /db_xref="SubtiList:BG11593"
                     /db_xref="UniProtKB/Swiss-Prot:P54599"
                     /translation="MRDGIGKRAASALFLCGVLVMLAVSSAIVSSAMYILSFPGQASG
                     ITKEQVTKHMKKESFKQADIYYTSKEKSLLPLTKETLEYAVSINQIMIGYSNQKPIDI
                     IFFPNEKQMEAYSGLLDVVGFYSEREQLIGLLPEEKKKLLEGDEVAVYLYQRLLIHEY
                     SHHAFHQKLKELETDPDEFPLWFHEGLSEWIANYELLIDPITFSVVPFDRLQTDRDWQ
                     EARAEYDTDVYLQSFYMIDELTDKYGKDIISEMIKETAKKGDFEKGFKSATKESLDQF
                     EKDFKKKFEKNSAALDSIYPMPLLLVKSLLTHSALCRRHLSLGRGE*"
     gene            971680..972648
                     /gene="yhcO"
                     /locus_tag="BSU_09165"
                     /old_locus_tag="BSU09165"
     downshifts      972524
                     /Source="Nicolas_upshifts"
                     /id="D473"
                     /incds=1
                     /nref=28
                     /ntot=62
                     /MaxReadThrough="1.51621"
                     /MaxDrop="5.75619"
                     /score="6.21571271"
                     /energy="-16.1"
                     /TU="NA"
                     /idTUdmin="U717"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(972580..973233)
                     /gene="yhcQ"
                     /locus_tag="BSU_09180"
                     /old_locus_tag="BSU09180"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore coat protein"
                     /protein_id="NP_388799.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09180"
                     /db_xref="EnsemblGenomes-Tr:CAB12746"
                     /db_xref="GOA:P54601"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="InterPro:IPR012851"
                     /db_xref="SubtiList:BG11595"
                     /db_xref="UniProtKB/Swiss-Prot:P54601"
                     /translation="MDQFNQQQQSQMNKGIPGKPHKNHGGHEMFDMHEVLSGTLTVLD
                     QFMMLRQFCKDQELLNILDRQHQFITSQYNITAECFKTGSEPSQKTATYMMKEDNQTV
                     YGMQPSQPKKPVQSMNDIDDSIISRQMLCAIKAQASMLTMASLEMTNPAVRRVLSAQI
                     QEYVEMAFEIFLYQNKHGYYQVPQLDAQDMEQLRNSFAPAQGQMPPTQGGMGQQGLH*
                     "
     gene            complement(972580..973233)
                     /gene="yhcQ"
                     /locus_tag="BSU_09180"
                     /old_locus_tag="BSU09180"
     downshifts      complement(972597)
                     /Source="Nicolas_upshifts"
                     /id="D474"
                     /incds=0
                     /nref=15
                     /ntot=57
                     /MaxReadThrough="4.13099"
                     /MaxDrop="4.95733"
                     /score="8.67086892"
                     /energy="-12.9"
                     /TU="U718"
                     /idTUdmin="U718"
                     /TUdmin="-546"
                     /isTUend="FALSE"
     promotor_-10    complement(973264..973275)
                     /Source="Nicolas_upshift_promotors"
                     /id="U718"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=828
                     /SigmaFactorBS="acagacagcatataattcctttcaggcttcTGCATAAtacac
                     ggcagactgACACAAAATACAgctgatctgaaaaaaaaggaggaattcggtttggatc
                     a"
                     /listShort="yhcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(973266)
                     /Source="Nicolas_upshifts"
                     /id="U718"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=828
                     /SigmaFactorBS="acagacagcatataattcctttcaggcttcTGCATAAtacac
                     ggcagactgACACAAAATACAgctgatctgaaaaaaaaggaggaattcggtttggatc
                     a"
                     /listShort="yhcQ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(973290..973296)
                     /Source="Nicolas_upshift_promotors"
                     /id="U718"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=828
                     /SigmaFactorBS="acagacagcatataattcctttcaggcttcTGCATAAtacac
                     ggcagactgACACAAAATACAgctgatctgaaaaaaaaggaggaattcggtttggatc
                     a"
                     /listShort="yhcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    973305..973313
                     /Source="Nicolas_upshift_promotors"
                     /id="U719"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=543
                     /SigmaFactorBS="tctgccgtgtattatgcagaagcctgAAAGGAATTatatgct
                     gtcTGTCGAAATGATAAGCAGAcaaaatcgttgtcattatgtgtataagggaggaaat
                     a"
                     /listShort="yhcR, yhcS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             973316..976969
                     /gene="mncR"
                     /locus_tag="BSU_09190"
                     /old_locus_tag="BSU09190"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:15292138, 21800427, 22020651"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15292138, 21800427,
                     22020651; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="non specific extracellular Ca2+-dependent
                     endonuclease cleaving RNA and DNA"
                     /protein_id="NP_388800.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09190"
                     /db_xref="EnsemblGenomes-Tr:CAB12747"
                     /db_xref="GOA:P54602"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR006146"
                     /db_xref="InterPro:IPR006179"
                     /db_xref="InterPro:IPR008334"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR016071"
                     /db_xref="InterPro:IPR019948"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="InterPro:IPR035437"
                     /db_xref="InterPro:IPR035451"
                     /db_xref="InterPro:IPR036907"
                     /db_xref="SubtiList:BG11596"
                     /db_xref="UniProtKB/Swiss-Prot:P54602"
                     /translation="MLSVEMISRQNRCHYVYKGGNMMRRILHIVLITALMFLNVMYTF
                     EAVKAAEPQQPISIEKAIQQKEGQALVEGYAVGQAVSPQHYKLTSPFSNDYNVALADR
                     KNKTSPEHILPVQIPSAFRSQFGLQTNPLLLGKKITVQGKLENYFNTTGLKNVQSMNV
                     TDDTKTPPAEQQVTINEARGRLNEEVTIKGIITADQNAIGGGKLSTFLQDETGGINIY
                     SPSPEQFPELKEGMDVTVTGKITSYQGLKEIVPNSSGIKINQSNQSLPAPKHLTINEL
                     INGSLGDQYEGRLVKLTAFVSSIPSSPAGGGYNVTMIDDDHHAMTLRVMNETGVINEL
                     DEGKWYEFTGVLSRYQTFQLLPRKSADLKLLEEQPAPPSAEGEYEGIVDRVVDGDTIH
                     LKSPVLGTTKIRFVNVDAPETYHTPKNDADENQLRFGKKASDYLKTVLSPGDKITVKV
                     GSEAKDSYGRLLGQVITESGSNVNLELVKNGYAPTYFIWPVDNEEDYQQFQAAVAAAK
                     KDQKGIWNENDPLMEMPFEFRAREQGKGLTRYVGDSSNKTYVQPADWKKIAVENRIFF
                     ASASEAESAGYKKRQTAPQEHVPLRILSMNDLHGKIDQQYELDLDGNGTVDGTFGRMD
                     YAAAYLKEKKAEKKNSLIVHAGDMIGGSSPVSSLLQDEPTVELMEDIGFDVGTVGNHE
                     FDEGTDELLRILNGGDHPKGTSGYDGQNFPLVCANCKMKSTGEPFLPAYDIINVEGVP
                     VAFIGVVTQSAAGMVMPEGIKNIEFTDEATAVNKAAEELKKKGVKAIAVLAHMSAEQN
                     GNAITGESADLANKTDSEIDVIFAAHNHQVVNGEVNGKLIVQAFEYGKAIGVVDVEID
                     KTTKDIVKKSAEIVYVDQSKIEPDVSASAILKKYETIAEPIISEVVGEAAVDMEGGYS
                     NDGDTPLGNLIADGMRAAMKTDFALMNGGGIREALKKGPITWGDLYNIQPFGNVLTKL
                     EIKGKDLREIINAQISPVFGPDYSISGFTYTWDKETGKAVDMKMADGTEIQPDATYTL
                     TVNNFMATATGAKYQPIGLLGKNPVTGPEDLEATVEYVKSFDEPIAYTKEGRIKLAEA
                     SDIEDPVTEDPITEEPGDDPGTEDPIKEDPRPGEDLPDIKETPGTAPVHQLPPSAISR
                     FNEIPINNTKTADTANSISTLPLQTETAESGSDHQLPDTSAGYYNFMVIGAAVTLSGT
                     YLYVRRKRSASRT*"
     gene            973316..976969
                     /gene="mncR"
                     /locus_tag="BSU_09190"
                     /old_locus_tag="BSU09190"
     promotor_-10    973324..973342
                     /Source="Nicolas_upshift_promotors"
                     /id="U719"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=543
                     /SigmaFactorBS="tctgccgtgtattatgcagaagcctgAAAGGAATTatatgct
                     gtcTGTCGAAATGATAAGCAGAcaaaatcgttgtcattatgtgtataagggaggaaat
                     a"
                     /listShort="yhcR, yhcS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        973339
                     /Source="Nicolas_upshifts"
                     /id="U719"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=543
                     /SigmaFactorBS="tctgccgtgtattatgcagaagcctgAAAGGAATTatatgct
                     gtcTGTCGAAATGATAAGCAGAcaaaatcgttgtcattatgtgtataagggaggaaat
                     a"
                     /listShort="yhcR, yhcS"
                     /GFF_Attribute="listLong"
     CDS             976966..977562
                     /gene="srtA"
                     /locus_tag="BSU_09200"
                     /old_locus_tag="BSU09200"
                     /EC_number="3.4.22.70"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12823805, 21800427, 22020651, 25038633"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12823805, 21800427,
                     22020651, 25038633; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="sortase A"
                     /protein_id="NP_388801.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09200"
                     /db_xref="EnsemblGenomes-Tr:CAB12748"
                     /db_xref="GOA:P54603"
                     /db_xref="InterPro:IPR005754"
                     /db_xref="InterPro:IPR023365"
                     /db_xref="SubtiList:BG11597"
                     /db_xref="UniProtKB/Swiss-Prot:P54603"
                     /translation="MKKVIPLFIIAAGLVIAGYGGFKLIDTNTKTEQTLKEAKLAAKK
                     PQEASGTKNSTDQAKNKASFKPETGQASGILEIPKINAELPIVEGTDADDLEKGVGHY
                     KDSYYPDENGQIVLSGHRDTVFRRTGELEKGDQLRLLLSYGEFTYEIVKTKIVDKDDT
                     SIITLQHEKEELILTTCYPFSYVGNAPKRYIIYGKRVT*"
     gene            976966..977562
                     /gene="srtA"
                     /locus_tag="BSU_09200"
                     /old_locus_tag="BSU09200"
     downshifts      977541
                     /Source="Nicolas_upshifts"
                     /id="D475"
                     /incds=0
                     /nref=142
                     /ntot=248
                     /MaxReadThrough="0.9984"
                     /MaxDrop="5.92245"
                     /score="-4.06268332"
                     /energy="-8.8"
                     /TU="NA"
                     /idTUdmin="U719"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(977592..978500)
                     /gene="yhcT"
                     /locus_tag="BSU_09210"
                     /old_locus_tag="BSU09210"
                     /EC_number="5.4.99.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9814761, 15044829;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA pseudouridine synthase"
                     /protein_id="NP_388802.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09210"
                     /db_xref="EnsemblGenomes-Tr:CAB12749"
                     /db_xref="GOA:P54604"
                     /db_xref="InterPro:IPR002942"
                     /db_xref="InterPro:IPR006145"
                     /db_xref="InterPro:IPR006224"
                     /db_xref="InterPro:IPR006225"
                     /db_xref="InterPro:IPR020103"
                     /db_xref="InterPro:IPR036986"
                     /db_xref="SubtiList:BG11598"
                     /db_xref="UniProtKB/Swiss-Prot:P54604"
                     /translation="MNQKGRGLEILINEKQDGQWLFSVLKTALKASKPVIQDWMSHQQ
                     IKVNHESVLNNMIVKKGDRVFIDLQESEASSVIPEYGELDILFEDNHMLIINKPAGIA
                     THPNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQ
                     LEKKTLKRTYTAIAEGKLRTKKGTINSPIGRDRSHPTRRRVSPGGQTAVTHFKVMASN
                     AKERLSLVELELETGRTHQIRVHLASLGHPLTGDSLYGGGSKLLNRQALHANKVQAVH
                     PITDELIVAEAPFPADMKNLCRTYFS*"
     gene            complement(977592..978500)
                     /gene="yhcT"
                     /locus_tag="BSU_09210"
                     /old_locus_tag="BSU09210"
     promotor_-35    978556..978564
                     /Source="Nicolas_upshift_promotors"
                     /id="U721"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig="0.999000999001"
                     /xcortree=2026
                     /SigmaFactorBS="tttcgaagcggaaggctgctgtttctcataggaaacacttaC
                     CTTAGCTTtcgcgtttttttcTGTGCTATTCTTGAGTAAGActtaggatattcgatgg
                     c"
                     /listShort="yhcU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(978557..978568)
                     /Source="Nicolas_upshift_promotors"
                     /id="U720"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=803
                     /SigmaFactorBS="cctttcttgccatcgaatatcctaagtcttactcaAGAATAG
                     cacagaaaaaaacGCGAAAGCTAAGgtaagtgtttcctatgagaaacagcagccttcc
                     g"
                     /listShort="yhcT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(978563)
                     /Source="Nicolas_upshifts"
                     /id="U720"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=803
                     /SigmaFactorBS="cctttcttgccatcgaatatcctaagtcttactcaAGAATAG
                     cacagaaaaaaacGCGAAAGCTAAGgtaagtgtttcctatgagaaacagcagccttcc
                     g"
                     /listShort="yhcT"
                     /GFF_Attribute="listLong"
     S_feature       complement(978565..979051)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_996597_997083_c"
                     /HighExp="S8, dia15, Diami, H2O2, G180, G150, dia5, Paraq,
                     Oxctl, S7"
                     /AntisenseName="yhcU"
                     /AntisenseCor="0.69394173601478304"
                     /AntisenseRegPval="-39.200000000000003"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.958"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S319"
     upshifts        978575
                     /Source="Nicolas_upshifts"
                     /id="U721"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig="0.999000999001"
                     /xcortree=2026
                     /SigmaFactorBS="tttcgaagcggaaggctgctgtttctcataggaaacacttaC
                     CTTAGCTTtcgcgtttttttcTGTGCTATTCTTGAGTAAGActtaggatattcgatgg
                     c"
                     /listShort="yhcU"
                     /GFF_Attribute="listLong"
     promotor_-10    978578..978597
                     /Source="Nicolas_upshift_promotors"
                     /id="U721"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig="0.999000999001"
                     /xcortree=2026
                     /SigmaFactorBS="tttcgaagcggaaggctgctgtttctcataggaaacacttaC
                     CTTAGCTTtcgcgtttttttcTGTGCTATTCTTGAGTAAGActtaggatattcgatgg
                     c"
                     /listShort="yhcU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(978582..978588)
                     /Source="Nicolas_upshift_promotors"
                     /id="U720"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=803
                     /SigmaFactorBS="cctttcttgccatcgaatatcctaagtcttactcaAGAATAG
                     cacagaaaaaaacGCGAAAGCTAAGgtaagtgtttcctatgagaaacagcagccttcc
                     g"
                     /listShort="yhcT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             978611..979006
                     /gene="yhcU"
                     /locus_tag="BSU_09220"
                     /old_locus_tag="BSU09220"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388803.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09220"
                     /db_xref="EnsemblGenomes-Tr:CAB12750"
                     /db_xref="InterPro:IPR020355"
                     /db_xref="SubtiList:BG11599"
                     /db_xref="UniProtKB/Swiss-Prot:P54605"
                     /translation="MARKVIDVRIVNAATAEQESFIKELSMELIHDVFPLYFSELDIQ
                     RFKKKGVLSLNNHYYQGTLKEAFQIMACLQMIHIILTKPSPHSDLSDQAIFEKNSKML
                     NDFGIYFPFAFSDFQKKTNKAFFGQRRLI*"
     gene            978611..979006
                     /gene="yhcU"
                     /locus_tag="BSU_09220"
                     /old_locus_tag="BSU09220"
     misc_feature    complement(979037..979056)
                     /Source="Nicolas_upshift_promotors"
                     /id="U722"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.709290709290709"
                     /psig="0.958041958041958"
                     /xcortree=1819
                     /SigmaFactorBS="cagacacgagccgtttaaaaagggagttagaggaaaggtttt
                     atgatatgatttcTCTGATACAAAAAGAGCTTTtctaaaaatagaaaagcccttgccg
                     c"
                     /listShort="S319, yhcT"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(979051)
                     /Source="Nicolas_upshifts"
                     /id="U722"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.709290709290709"
                     /psig="0.958041958041958"
                     /xcortree=1819
                     /SigmaFactorBS="cagacacgagccgtttaaaaagggagttagaggaaaggtttt
                     atgatatgatttcTCTGATACAAAAAGAGCTTTtctaaaaatagaaaagcccttgccg
                     c"
                     /listShort="S319, yhcT"
                     /GFF_Attribute="listLong"
     promotor_-35    979091..979097
                     /Source="Nicolas_upshift_promotors"
                     /id="U723"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=842
                     /SigmaFactorBS="tttgtatcagagaaatcatatcataaaacctttcctctaact
                     cccTTTTTAAacggctcgtgtctGAACATACTAATgattgaaaggggtgctgacaatg
                     a"
                     /listShort="yhcV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        979106
                     /Source="Nicolas_upshifts"
                     /id="U723"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=842
                     /SigmaFactorBS="tttgtatcagagaaatcatatcataaaacctttcctctaact
                     cccTTTTTAAacggctcgtgtctGAACATACTAATgattgaaaggggtgctgacaatg
                     a"
                     /listShort="yhcV"
                     /GFF_Attribute="listLong"
     promotor_-10    979111..979122
                     /Source="Nicolas_upshift_promotors"
                     /id="U723"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=842
                     /SigmaFactorBS="tttgtatcagagaaatcatatcataaaacctttcctctaact
                     cccTTTTTAAacggctcgtgtctGAACATACTAATgattgaaaggggtgctgacaatg
                     a"
                     /listShort="yhcV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(979121..979135)
                     /Source="Nicolas_upshift_promotors"
                     /id="U724"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99000999000999"
                     /psig="0.002997002997003"
                     /xcortree=708
                     /SigmaFactorBS="ttcggagaaacggttgccacctgcgttgtcattgtatcttta
                     actgaaCTCATtgtcagcACCCCTTTCAATCATtagtatgttcagacacgagccgttt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(979135)
                     /Source="Nicolas_upshifts"
                     /id="U724"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99000999000999"
                     /psig="0.002997002997003"
                     /xcortree=708
                     /SigmaFactorBS="ttcggagaaacggttgccacctgcgttgtcattgtatcttta
                     actgaaCTCATtgtcagcACCCCTTTCAATCATtagtatgttcagacacgagccgttt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(979143..979147)
                     /Source="Nicolas_upshift_promotors"
                     /id="U724"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99000999000999"
                     /psig="0.002997002997003"
                     /xcortree=708
                     /SigmaFactorBS="ttcggagaaacggttgccacctgcgttgtcattgtatcttta
                     actgaaCTCATtgtcagcACCCCTTTCAATCATtagtatgttcagacacgagccgttt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             979143..979565
                     /gene="yhcV"
                     /locus_tag="BSU_09230"
                     /old_locus_tag="BSU09230"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17322312; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative CBS containing enzyme (sporulation-/
                     germination-related)"
                     /protein_id="NP_388804.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09230"
                     /db_xref="EnsemblGenomes-Tr:CAB12751"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="SubtiList:BG11600"
                     /db_xref="UniProtKB/Swiss-Prot:P54606"
                     /translation="MSSVKDTMTTQVATVSPNQTIQEAASLMKQHNVGAIPVVEQGVL
                     KGMLTDRDIALRTTAQGRDGQTPVSEVMSTELVSGNPNMSLEDASQLMAQHQIRRLPI
                     VDQNNLVGIVALGDLAVNQMSNESAGSALTNISHQNIH*"
     gene            979143..979565
                     /gene="yhcV"
                     /locus_tag="BSU_09230"
                     /old_locus_tag="BSU09230"
     promotor_no_box complement(979469..979569)
                     /Source="Nicolas_upshift_promotors"
                     /id="U725"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.3996003996004"
                     /psig="0.014985014985015"
                     /xcortree=1493
                     /SigmaFactorBS="cttattaatgaatgttttggtgagaaatgtttgtcagcgctg
                     atcccgcagactcgttcgacatctgattgactgccaggtctccaagcgcaacgatccc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(979509)
                     /Source="Nicolas_upshifts"
                     /id="U725"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.3996003996004"
                     /psig="0.014985014985015"
                     /xcortree=1493
                     /SigmaFactorBS="cttattaatgaatgttttggtgagaaatgtttgtcagcgctg
                     atcccgcagactcgttcgacatctgattgactgccaggtctccaagcgcaacgatccc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      979543
                     /Source="Nicolas_upshifts"
                     /id="D476"
                     /incds=0
                     /nref=50
                     /ntot=61
                     /MaxReadThrough="2.62549"
                     /MaxDrop="7.03747"
                     /score="-2.59023198"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U723"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(979575)
                     /Source="Nicolas_upshifts"
                     /id="D477"
                     /incds=0
                     /nref=2
                     /ntot=10
                     /MaxReadThrough="0.0992700000000006"
                     /MaxDrop="3.96142"
                     /score="-9.32793172"
                     /energy="-9.1"
                     /TU="NA"
                     /idTUdmin="U724"
                     /TUdmin="-506"
                     /isTUend="FALSE"
     promotor_-35    979615..979622
                     /Source="Nicolas_upshift_promotors"
                     /id="U726"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=1997
                     /SigmaFactorBS="gtgcaggctctttcttcacataaaaccttacTTTTTGAAagc
                     agacttgtttCGGGGTATAGTGAGTGTATAcatatgtctcaattcgtactaaaggagt
                     t"
                     /listShort="yhcW, yhcX, yhzG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    979636..979655
                     /Source="Nicolas_upshift_promotors"
                     /id="U726"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=1997
                     /SigmaFactorBS="gtgcaggctctttcttcacataaaaccttacTTTTTGAAagc
                     agacttgtttCGGGGTATAGTGAGTGTATAcatatgtctcaattcgtactaaaggagt
                     t"
                     /listShort="yhcW, yhcX, yhzG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        979644
                     /Source="Nicolas_upshifts"
                     /id="U726"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=1997
                     /SigmaFactorBS="gtgcaggctctttcttcacataaaaccttacTTTTTGAAagc
                     agacttgtttCGGGGTATAGTGAGTGTATAcatatgtctcaattcgtactaaaggagt
                     t"
                     /listShort="yhcW, yhcX, yhzG"
                     /GFF_Attribute="listLong"
     CDS             979692..980354
                     /gene="glpW"
                     /locus_tag="BSU_09240"
                     /old_locus_tag="BSU09240"
                     /EC_number="3.1.3.18"
                     /EC_number="3.1.3.68"
                     /EC_number="3.1.3.-"
                     /function="16.3: Control"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 16990279, 22353596; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous phosphoglycolate phosphatase /
                     glycerol-3-phosphate phosphatase /
                     2-deoxyglucose-6-phosphatase"
                     /protein_id="NP_388805.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09240"
                     /db_xref="EnsemblGenomes-Tr:CAB12752"
                     /db_xref="GOA:P54607"
                     /db_xref="InterPro:IPR006439"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="SubtiList:BG11601"
                     /db_xref="UniProtKB/Swiss-Prot:P54607"
                     /translation="MIKALIFDFDGLILDTETHEYEVLQEIFEEHGSVLPLSVWGKVI
                     GTAAGFRPFEYLEEQIGKKLNHEELTQLRRERFAKRMESEKARPGVEAYLNAAKDLGL
                     KIGLASSSDYKWVSGHLKQIGLFDDFEVIQTADDVEEVKPNPELYLLAAKNLGVSPAE
                     CLAFEDSVNGSIAAKRAGMKCVIVPNKVTGTLMFEDYDHRLESMAEMELALLLDHLNS
                     QN*"
     gene            979692..980354
                     /gene="glpW"
                     /locus_tag="BSU_09240"
                     /old_locus_tag="BSU09240"
     CDS             980370..981911
                     /gene="yhcX"
                     /locus_tag="BSU_09250"
                     /old_locus_tag="BSU09250"
                     /EC_number="3.5.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 26337367, 26808445,
                     17555270; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative amidohydrolase"
                     /protein_id="NP_388806.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09250"
                     /db_xref="EnsemblGenomes-Tr:CAB12753"
                     /db_xref="GOA:P54608"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR001110"
                     /db_xref="InterPro:IPR003010"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="InterPro:IPR036526"
                     /db_xref="SubtiList:BG11602"
                     /db_xref="UniProtKB/Swiss-Prot:P54608"
                     /translation="MSEKLDLTRFEKKMVIRNIEEKDIDKIIDLQKDCFPGMEPWKRE
                     HLISHLEHFPEGQFCAEFEGEIIGSCSSLLINFDEYDDRHTWQDITDDGYITNHNPDG
                     LNMYGIEVMVHPKYRRMKIGHRLYEARKDLARRLNLKSIIIGGRIPNYHKYAEEMTAR
                     EYVEQVTRHQIYDPVLSFQLMNGFTLMRINPNYLPDDTASIKYATLMEWNNVDYLPQQ
                     TKRYYKSAFPVRICVIQYEMKKIYSFEEFANQVEYYVDVASDARSDFAVFPEIFTTQL
                     MSFLEERSPSLAVQRITEYTEDYISLFTDLAVKYNVNIIGGSHFVEEEGKIYNIAYLF
                     RRDGTIEKQYKLHITPNERKWWGISAGDQVRVFDTDCGKIAIQICYDIEFPELARIAA
                     DKGAKIIFTPFCTEDRQGYLRVRYCSQARAVENQIYTVISGTVGNLPQTENMDIQYAQ
                     SGIFAPSDFEFARDGIVGETNPNIEMVVIGDVDLEILRRQRQNGTVRQLKDRRRDIYH
                     IQYKK*"
     gene            980370..981911
                     /gene="yhcX"
                     /locus_tag="BSU_09250"
                     /old_locus_tag="BSU09250"
     downshifts      981894
                     /Source="Nicolas_upshifts"
                     /id="D478"
                     /incds=0
                     /nref=57
                     /ntot=238
                     /MaxReadThrough="4.24486"
                     /MaxDrop="5.06754"
                     /score="24.7413026"
                     /energy="-10.5"
                     /TU="U726"
                     /idTUdmin="U726"
                     /TUdmin="-224"
                     /isTUend="FALSE"
     CDS             981995..982186
                     /gene="yhzG"
                     /locus_tag="BSU_09259"
                     /old_locus_tag="BSU09259"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /db_xref="PSEUDO:CAX52585.1"
                     /translation="MYSGCALWSFCIFAISYIIQKTARLHIAIAMAVQVVSSATFIST
                     MLSIVTLPVLLWKLHPLSS*"
     gene            981995..982186
                     /gene="yhzG"
                     /locus_tag="BSU_09259"
                     /old_locus_tag="BSU09259"
                     /pseudo
     promotor_-35    982217..982224
                     /Source="Nicolas_upshift_promotors"
                     /id="U727"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.923076923076923"
                     /psig=1
                     /xcortree=333
                     /SigmaFactorBS="aggggatgttttattatttacgcggttTATTGACTctgaccc
                     ggtctggCTTTATATTGAAGGCAGGGAaatcatcaccaagacatcacataaagagaag
                     g"
                     /listShort="S320, yhxA, glpP, S321, glpF, glpK"
                     /listLong="S322, glpD, S323, pgcA"
                     /label="promotor_-35"
     promotor_-10    982239..982258
                     /Source="Nicolas_upshift_promotors"
                     /id="U727"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.923076923076923"
                     /psig=1
                     /xcortree=333
                     /SigmaFactorBS="aggggatgttttattatttacgcggttTATTGACTctgaccc
                     ggtctggCTTTATATTGAAGGCAGGGAaatcatcaccaagacatcacataaagagaag
                     g"
                     /listShort="S320, yhxA, glpP, S321, glpF, glpK"
                     /listLong="S322, glpD, S323, pgcA"
                     /label="promotor_-10"
     S_feature       982250..982331
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1000282_1000363"
                     /HighExp="M40t90, M0t90, T0.30H, LBGstat, BC, Lbstat,
                     M9-stat, Lbtran, T1.0H, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S320"
     upshifts        982250
                     /Source="Nicolas_upshifts"
                     /id="U727"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.923076923076923"
                     /psig=1
                     /xcortree=333
                     /SigmaFactorBS="aggggatgttttattatttacgcggttTATTGACTctgaccc
                     ggtctggCTTTATATTGAAGGCAGGGAaatcatcaccaagacatcacataaagagaag
                     g"
                     /listShort="S320, yhxA, glpP, S321, glpF, glpK"
                     /listLong="S322, glpD, S323, pgcA"
     CDS             982332..983684
                     /gene="yhxA"
                     /locus_tag="BSU_09260"
                     /old_locus_tag="BSU09260"
                     /EC_number="2.6.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11082195, 23610425;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminotransferase"
                     /protein_id="NP_388807.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09260"
                     /db_xref="EnsemblGenomes-Tr:CAB12754"
                     /db_xref="GOA:P33189"
                     /db_xref="InterPro:IPR005814"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG10184"
                     /db_xref="UniProtKB/Swiss-Prot:P33189"
                     /translation="MEMMGMENIQQNQGLKQKDEQFVWHAMKGAHQADSLIAQKAEGA
                     WVTDTDGRRYLDAMSGLWCVNIGYGRKELAEAAYEQLKELPYYPLTQSHAPAIQLAEK
                     LNEWLGGDYVIFFSNSGSEANETAFKIARQYHLQNGDHSRYKFISRYRAYHGNTLGAL
                     SATGQAQRKYKYEPLSQGFLHAAPPDIYRNPDDADTLESANEIDRIMTWELSETIAGV
                     IMEPIITGGGILMPPDGYMKKVEDICRRHGALLICDEVICGFGRTGEPFGFMHYGVKP
                     DIITMAKGITSAYLPLSATAVKRDIFEAYQGEAPYDRFRHVNTFGGSPAACALALKNL
                     QIMEDEQLIQRSRDLGAKLLGELQALREHPAVGDVRGKGLLIGIELVKDKLTKEPADA
                     AKVNQVVAACKEKGLIIGKNGDTVAGYNNVIQLAPPFCLTEEDLSFIVKTVKESFQTI
                     *"
     gene            982332..983684
                     /gene="yhxA"
                     /locus_tag="BSU_09260"
                     /old_locus_tag="BSU09260"
     CDS             983712..984290
                     /gene="glpP"
                     /locus_tag="BSU_09270"
                     /old_locus_tag="BSU09270"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11929549, 23610425, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11929549, 23610425,
                     22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate responding
                     transcriptionantiterminator"
                     /protein_id="NP_388808.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09270"
                     /db_xref="EnsemblGenomes-Tr:CAB12755"
                     /db_xref="GOA:P30300"
                     /db_xref="InterPro:IPR006699"
                     /db_xref="InterPro:IPR035928"
                     /db_xref="SubtiList:BG10185"
                     /db_xref="UniProtKB/Swiss-Prot:P30300"
                     /translation="MMSFHNQPILPAIRNMKQFDEFLNSSFSYGVILDIHLGQLKGVI
                     KEAQKHGKNMMVHVDLIQGIKHDEYGAEFICQDIKPAGIISTRSNVIAKAKQKKIYAI
                     QRLFLLDTSAMEKSMEFIGKHKPDFIEVLPGIVPSLIQEIKEKTGIPIFAGGFIRTEE
                     DVEQALKAGAVAVTTSNTKLWKKYENFLTESD*"
     gene            983712..984290
                     /gene="glpP"
                     /locus_tag="BSU_09270"
                     /old_locus_tag="BSU09270"
     promotor_-35    984285..984292
                     /Source="Nicolas_upshift_promotors"
                     /id="U728"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.998001998001998"
                     /xcortree=276
                     /SigmaFactorBS="aaatatgaaaactttttgacggaaagtGATTGACAccgcttt
                     catgcacTGATACAATTGCACTAGGTTaatacattgtgatggagaactcggagaccac
                     a"
                     /listShort="S321, glpF, glpK, S322, glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    984307..984326
                     /Source="Nicolas_upshift_promotors"
                     /id="U728"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.998001998001998"
                     /xcortree=276
                     /SigmaFactorBS="aaatatgaaaactttttgacggaaagtGATTGACAccgcttt
                     catgcacTGATACAATTGCACTAGGTTaatacattgtgatggagaactcggagaccac
                     a"
                     /listShort="S321, glpF, glpK, S322, glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        984318
                     /Source="Nicolas_upshifts"
                     /id="U728"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.605394605394605"
                     /psig="0.998001998001998"
                     /xcortree=276
                     /SigmaFactorBS="aaatatgaaaactttttgacggaaagtGATTGACAccgcttt
                     catgcacTGATACAATTGCACTAGGTTaatacattgtgatggagaactcggagaccac
                     a"
                     /listShort="S321, glpF, glpK, S322, glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
     downshifts      984333
                     /Source="Nicolas_upshifts"
                     /id="D479"
                     /incds=0
                     /nref=3
                     /ntot=39
                     /MaxReadThrough="8.20986"
                     /MaxDrop="2.99328"
                     /score="6.07464219"
                     /energy="-10"
                     /TU="U727,U728"
                     /idTUdmin="U726"
                     /TUdmin=2215
                     /isTUend="FALSE"
     S_feature       984378..984468
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1002410_1002500"
                     /HighExp="Diami, T0.30H, G150, Oxctl, Gly, Paraq, dia5,
                     BC, B60, H2O2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S321"
     CDS             984469..985293
                     /gene="glpF"
                     /locus_tag="BSU_09280"
                     /old_locus_tag="BSU09280"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11929549, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11929549, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol permease"
                     /protein_id="NP_388809.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09280"
                     /db_xref="EnsemblGenomes-Tr:CAB12756"
                     /db_xref="GOA:P18156"
                     /db_xref="InterPro:IPR000425"
                     /db_xref="InterPro:IPR022357"
                     /db_xref="InterPro:IPR023271"
                     /db_xref="SubtiList:BG10186"
                     /db_xref="UniProtKB/Swiss-Prot:P18156"
                     /translation="MTAFWGEVIGTMLLIIFGAGVCAGVNLKKSLSFQSGWIVVVFGW
                     GLGVAMAAYAVGGISGAHLNPALTIALAFVGDFPWKEVPVYIAAQMIGAIIGAVIIYL
                     HYLPHWKSTDDPAAKLGVFSTGPSIPHTFANVLSEVIGTFVLVLGILAIGANQFTEGL
                     NPLIVGFLIVAIGISLGGTTGYAINPARDLGPRIAHAFLPIPGKGSSNWKYAWVPVVG
                     PILGGSFGGVFYNAAFKGHITSSFWIVSVILVVVLLGLYVYTKSHSAKTLSNSKYI*"
     gene            984469..985293
                     /gene="glpF"
                     /locus_tag="BSU_09280"
                     /old_locus_tag="BSU09280"
     CDS             985312..986802
                     /gene="glpK"
                     /locus_tag="BSU_09290"
                     /old_locus_tag="BSU09290"
                     /EC_number="2.7.1.30"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9972264, 10920256, 11929549,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase (sn-glycerol-3-phosphate
                     generating)"
                     /protein_id="NP_388810.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09290"
                     /db_xref="EnsemblGenomes-Tr:CAB12757"
                     /db_xref="GOA:P18157"
                     /db_xref="InterPro:IPR000577"
                     /db_xref="InterPro:IPR005999"
                     /db_xref="InterPro:IPR018483"
                     /db_xref="InterPro:IPR018484"
                     /db_xref="InterPro:IPR018485"
                     /db_xref="SubtiList:BG10187"
                     /db_xref="UniProtKB/Swiss-Prot:P18157"
                     /translation="METYILSLDQGTTSSRAILFNKEGKIVHSAQKEFTQYFPHPGWV
                     EHNANEIWGSVLAVIASVISESGISASQIAGIGITNQRETTVVWDKDTGSPVYNAIVW
                     QSRQTSGICEELREKGYNDKFREKTGLLIDPYFSGTKVKWILDNVEGAREKAEKGELL
                     FGTIDTWLIWKMSGGKAHVTDYSNASRTLMFNIYDLKWDDELLDILGVPKSMLPEVKP
                     SSHVYAETVDYHFFGKNIPIAGAAGDQQSALFGQACFEEGMGKNTYGTGCFMLMNTGE
                     KAIKSEHGLLTTIAWGIDGKVNYALEGSIFVAGSAIQWLRDGLRMFQDSSLSESYAEK
                     VDSTDGVYVVPAFVGLGTPYWDSDVRGSVFGLTRGTTKEHFIRATLESLAYQTKDVLD
                     AMEADSNISLKTLRVDGGAVKNNFLMQFQGDLLNVPVERPEINETTALGAAYLAGIAV
                     GFWKDRSEIANQWNLDKRFEPELEEEKRNELYKGWQKAVKAAMAFK*"
     gene            985312..986802
                     /gene="glpK"
                     /locus_tag="BSU_09290"
                     /old_locus_tag="BSU09290"
     promotor_-35    986113..986119
                     /Source="Nicolas_upshift_promotors"
                     /id="U729"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=149
                     /SigmaFactorBS="gcatggggaaaaacacttacggcacaggaTGTTTCAtgctga
                     tgaataccGGGGAAAAAGCAATTAAGTCcgaacatgggcttttgacaacaatcgcttg
                     g"
                     /listShort="S322, glpD, S323"
                     /listLong="pgcA"
                     /label="promotor_-35"
     promotor_-10    986134..986153
                     /Source="Nicolas_upshift_promotors"
                     /id="U729"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=149
                     /SigmaFactorBS="gcatggggaaaaacacttacggcacaggaTGTTTCAtgctga
                     tgaataccGGGGAAAAAGCAATTAAGTCcgaacatgggcttttgacaacaatcgcttg
                     g"
                     /listShort="S322, glpD, S323"
                     /listLong="pgcA"
                     /label="promotor_-10"
     upshifts        986144
                     /Source="Nicolas_upshifts"
                     /id="U729"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=149
                     /SigmaFactorBS="gcatggggaaaaacacttacggcacaggaTGTTTCAtgctga
                     tgaataccGGGGAAAAAGCAATTAAGTCcgaacatgggcttttgacaacaatcgcttg
                     g"
                     /listShort="S322, glpD, S323"
                     /listLong="pgcA"
     S_feature       986803..986891
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1004835_1004923"
                     /HighExp="Sw, Etha, Salt, G150, Gly, Diami, T0.30H, B60,
                     BC, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigA"
                     /TUshortPSig="1, 0.998"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S322"
     downshifts      986848
                     /Source="Nicolas_upshifts"
                     /id="D480"
                     /incds=0
                     /nref=34
                     /ntot=91
                     /MaxReadThrough="7.63856"
                     /MaxDrop="5.2045"
                     /score="21.1943866"
                     /energy="-28.7"
                     /TU="U728,U729"
                     /idTUdmin="U727"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_no_box 986854..986954
                     /Source="Nicolas_upshift_promotors"
                     /id="U730"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.566433566433566"
                     /psig="0.154845154845155"
                     /xcortree=277
                     /SigmaFactorBS="aggagagaccacagcaccaaagtgtaagcatgcactttggct
                     gttgtggtctctttttctatttaccgtgacaacaaggaggaaacgtaatgatgaatca
                     t"
                     /listShort="glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        986914
                     /Source="Nicolas_upshifts"
                     /id="U730"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.566433566433566"
                     /psig="0.154845154845155"
                     /xcortree=277
                     /SigmaFactorBS="aggagagaccacagcaccaaagtgtaagcatgcactttggct
                     gttgtggtctctttttctatttaccgtgacaacaaggaggaaacgtaatgatgaatca
                     t"
                     /listShort="glpD, S323, pgcA"
                     /GFF_Attribute="listLong"
     CDS             986943..988610
                     /gene="glpD"
                     /locus_tag="BSU_09300"
                     /old_locus_tag="BSU09300"
                     /EC_number="1.1.3.21"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2127799, 8825777, 9595668, 10633102, 18946204"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2127799, 8825777,
                     9595668, 10633102, 18946204; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate oxidase (FAD-dependent)"
                     /protein_id="NP_388811.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09300"
                     /db_xref="EnsemblGenomes-Tr:CAB12758"
                     /db_xref="GOA:P18158"
                     /db_xref="InterPro:IPR000447"
                     /db_xref="InterPro:IPR006076"
                     /db_xref="InterPro:IPR031656"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG10188"
                     /db_xref="UniProtKB/Swiss-Prot:P18158"
                     /translation="MMNHQFSSLERDRMLTDMTKKTYDLFIIGGGITGAGTALDAASR
                     GMKVALSEMQDFAAGTSSRSTKLVHGGLRYLKQFEVKMVAEVGKERAIVYENGPHVTT
                     PEWMLLPFHKGGTFGSFTTSIGLRVYDFLAGVKKSERRSMLSAKETLQKEPLVKKDGL
                     KGGGYYVEYRTDDARLTIEVMKEAVKFGAEPVNYSKVKELLYEKGKAVGVLIEDVLTK
                     KEYKVYAKKIVNATGPWVDQLREKDHSKNGKHLQHTKGIHLVFDQSVFPLKQAVYFDT
                     PDGRMVFAIPREGKTYVGTTDTVYKEALEHPRMTTEDRDYVIKSINYMFPELNITAND
                     IESSWAGLRPLIHEEGKDPSEISRKDEIWTSDSGLITIAGGKLTGYRKMAEHIVDLVR
                     DRLKEEGEKDFGPCKTKNMPISGGHVGGSKNLMSFVTAKTKEGIAAGLSEKDAKQLAI
                     RYGSNVDRVFDRVEALKDEAAKRNIPVHILAEAEYSIEEEMTATPADFFVRRTGRLFF
                     DINWVRTYKDAVIDFMSERFQWDEQAKNKHTENLNKLLHDAVVPLEQ*"
     gene            986943..988610
                     /gene="glpD"
                     /locus_tag="BSU_09300"
                     /old_locus_tag="BSU09300"
     promotor_-35    988372..988377
                     /Source="Nicolas_upshift_promotors"
                     /id="U731"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1176
                     /SigmaFactorBS="aaagatgaggccgcgaaacgcaacattccggTTCATAttctt
                     gctgaggcaGAATACAGTATAGAAGAAGagatgactgcaacccctgctgacttctttg
                     t"
                     /listShort="S323"
                     /listLong="pgcA"
                     /label="promotor_-35"
     promotor_-10    988392..988410
                     /Source="Nicolas_upshift_promotors"
                     /id="U731"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1176
                     /SigmaFactorBS="aaagatgaggccgcgaaacgcaacattccggTTCATAttctt
                     gctgaggcaGAATACAGTATAGAAGAAGagatgactgcaacccctgctgacttctttg
                     t"
                     /listShort="S323"
                     /listLong="pgcA"
                     /label="promotor_-10"
     upshifts        988401
                     /Source="Nicolas_upshifts"
                     /id="U731"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1176
                     /SigmaFactorBS="aaagatgaggccgcgaaacgcaacattccggTTCATAttctt
                     gctgaggcaGAATACAGTATAGAAGAAGagatgactgcaacccctgctgacttctttg
                     t"
                     /listShort="S323"
                     /listLong="pgcA"
     promotor_-35    988455..988461
                     /Source="Nicolas_upshift_promotors"
                     /id="U732"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=255
                     /SigmaFactorBS="actgcaacccctgctgacttctttgtccgcagaacgggaCGT
                     TTATtttttgatatcaattGGGTAAGAACATATAAAGAtgccgttattgattttatga
                     g"
                     /listShort="S323, pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        988476
                     /Source="Nicolas_upshifts"
                     /id="U732"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=255
                     /SigmaFactorBS="actgcaacccctgctgacttctttgtccgcagaacgggaCGT
                     TTATtttttgatatcaattGGGTAAGAACATATAAAGAtgccgttattgattttatga
                     g"
                     /listShort="S323, pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
     promotor_-10    988477..988495
                     /Source="Nicolas_upshift_promotors"
                     /id="U732"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=255
                     /SigmaFactorBS="actgcaacccctgctgacttctttgtccgcagaacgggaCGT
                     TTATtttttgatatcaattGGGTAAGAACATATAAAGAtgccgttattgattttatga
                     g"
                     /listShort="S323, pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      988578
                     /Source="Nicolas_upshifts"
                     /id="D481"
                     /incds=0
                     /nref=13
                     /ntot=60
                     /MaxReadThrough="6.57605"
                     /MaxDrop="4.31183"
                     /score="11.5542287"
                     /energy="-11.4"
                     /TU="U728,U729,U730,U731,U732"
                     /idTUdmin="U729"
                     /TUdmin="-118"
                     /isTUend="FALSE"
     S_feature       988623..988696
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1006655_1006728"
                     /HighExp="G150, Etha, Oxctl, H2O2, Gly, Diami, Paraq,
                     Salt, B36, BT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigEF, Sig-, SigB, SigA"
                     /TUshortPSig="1, 0.995, 0.155, 1, 0.998"
                     /TUlongSig="SigA"
                     /TUlongPSig=1
                     /label="S323"
     promotor_-35    988678..988685
                     /Source="Nicolas_upshift_promotors"
                     /id="U733"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1942
                     /SigmaFactorBS="atttctttttacgtgccgaaagggggagatctcaggttatCA
                     AGTGACagaggcacccgctTCATATAAAATAATGGCATAagctgatacataggaggac
                     g"
                     /listShort="pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        988698
                     /Source="Nicolas_upshifts"
                     /id="U733"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1942
                     /SigmaFactorBS="atttctttttacgtgccgaaagggggagatctcaggttatCA
                     AGTGACagaggcacccgctTCATATAAAATAATGGCATAagctgatacataggaggac
                     g"
                     /listShort="pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
     promotor_-10    988699..988718
                     /Source="Nicolas_upshift_promotors"
                     /id="U733"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig="0.998001998001998"
                     /xcortree=1942
                     /SigmaFactorBS="atttctttttacgtgccgaaagggggagatctcaggttatCA
                     AGTGACagaggcacccgctTCATATAAAATAATGGCATAagctgatacataggaggac
                     g"
                     /listShort="pgcA, S324, yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             988742..990487
                     /gene="pgcA"
                     /locus_tag="BSU_09310"
                     /old_locus_tag="BSU09310"
                     /EC_number="5.4.2.2"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15640167, 17662947, 24097947, 26735940, 27684739"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15640167, 17662947,
                     24097947, 26735940, 27684739; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-phosphoglucomutase"
                     /protein_id="NP_388812.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09310"
                     /db_xref="EnsemblGenomes-Tr:CAB12759"
                     /db_xref="GOA:P18159"
                     /db_xref="InterPro:IPR005841"
                     /db_xref="InterPro:IPR005843"
                     /db_xref="InterPro:IPR005844"
                     /db_xref="InterPro:IPR005845"
                     /db_xref="InterPro:IPR005846"
                     /db_xref="InterPro:IPR016055"
                     /db_xref="InterPro:IPR016066"
                     /db_xref="InterPro:IPR036900"
                     /db_xref="SubtiList:BG10189"
                     /db_xref="UniProtKB/Swiss-Prot:P18159"
                     /translation="MTWRKSYERWKQTEHLDLELKERLIELEGDEQALEDCFYKDLEF
                     GTGGMRGEIGAGTNRMNIYTVRKASAGFAAYISKQGEEAKKRGVVIAYDSRHKSPEFA
                     MEAAKTLATQGIQTYVFDELRPTPELSFAVRQLNAYGGIVVTASHNPPEYNGYKVYGD
                     DGGQLPPKEADIVIEQVNAIENELTITVDEENKLKEKGLIKIIGEDIDKVYTEKLTSI
                     SVHPELSEEVDVKVVFTPLHGTANKPVRRGLEALGYKNVTVVKEQELPDSNFSTVTSP
                     NPEEHAAFEYAIKLGEEQNADILIATDPDADRLGIAVKNDQGKYTVLTGNQTGALLLH
                     YLLSEKKKQGILPDNGVVLKTIVTSEIGRAVASSFGLDTIDTLTGFKFIGEKIKEYEA
                     SGQYTFQFGYEESYGYLIGDFARDKDAIQAALLAVEVCAFYKKQGMSLYEALINLFNE
                     YGFYREGLKSLTLKGKQGAEQIEAILASFRQNPPQKMAGKQVVTAEDYAVSKRTLLTE
                     SKEEAIDLPKSNVLKYFLEDGSWFCLRPSGTEPKVKFYFAVKGSSLEDSEKRLAVLSE
                     DVMKTVDEIVESTAK*"
     gene            988742..990487
                     /gene="pgcA"
                     /locus_tag="BSU_09310"
                     /old_locus_tag="BSU09310"
     downshifts      990476
                     /Source="Nicolas_upshifts"
                     /id="D482"
                     /incds=0
                     /nref=227
                     /ntot=264
                     /MaxReadThrough="4.80136"
                     /MaxDrop="5.89896"
                     /score="26.7163878"
                     /energy="-13"
                     /TU="U732,U733"
                     /idTUdmin="U728"
                     /TUdmin="-6"
                     /isTUend="TRUE"
     S_feature       990521..990590
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1008553_1008622"
                     /HighExp="Etha, H2O2, B36, dia15, Paraq, G150, LoTm, S8,
                     Oxctl, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S324"
     misc_feature    990592..990611
                     /Source="Nicolas_upshift_promotors"
                     /id="U734"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.62037962037962"
                     /psig="0.998001998001998"
                     /xcortree=3137
                     /SigmaFactorBS="tttctcatccaaaagtctgaaagaaaatcatcctacaagtga
                     agcaatgaaatacaaaaaACTGGTATAATCTTAAATACaagatcaatgccggagtgag
                     a"
                     /listShort="yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        990592
                     /Source="Nicolas_upshifts"
                     /id="U734"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.62037962037962"
                     /psig="0.998001998001998"
                     /xcortree=3137
                     /SigmaFactorBS="tttctcatccaaaagtctgaaagaaaatcatcctacaagtga
                     agcaatgaaatacaaaaaACTGGTATAATCTTAAATACaagatcaatgccggagtgag
                     a"
                     /listShort="yhcY, yhcZ, yhdA"
                     /GFF_Attribute="listLong"
     CDS             990636..991775
                     /gene="yhcY"
                     /locus_tag="BSU_09320"
                     /old_locus_tag="BSU09320"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 16816187, 16267314, 20639339, 21335452"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 16816187,
                     16267314, 20639339, 21335452; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YhcZ]"
                     /protein_id="NP_388813.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09320"
                     /db_xref="EnsemblGenomes-Tr:CAB12760"
                     /db_xref="GOA:O07527"
                     /db_xref="InterPro:IPR003018"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR011712"
                     /db_xref="InterPro:IPR029016"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG13005"
                     /db_xref="UniProtKB/Swiss-Prot:O07527"
                     /translation="MSKTRMEKLKTLKTIAETLNQGHDIKATLDEVLKELLSLTNLQS
                     GWIFLIEEDGSYTLAADAYLPPALSRKEKVLMCEGECYCLTKFNNGGLRKAANIMNCK
                     RIESAENLHCFDTEGITHHATVPLEDGDRRFGLLNVAAAGKTMFDEEELHLLESVAFQ
                     IGTAIQRMRLSEYQQKNALLMERNRLAQELHDSVNQMLFSVSLTAKAAKTLTKDENLQ
                     QMIDFIQNLSQDALAEMKALIWQLRPGGLEKGLAEAIKSYGALIGLKIIFTQKGCPVL
                     TDEQEHMLWRVVQEALNNCKKHAGTDTAYVSLTASLCHAELDIIDHGAGFRYEAHAGL
                     PSLGIKGMKERAEKAGAKFWIESALGTGTKLSIRLPLKSRKGGAV*"
     gene            990636..991775
                     /gene="yhcY"
                     /locus_tag="BSU_09320"
                     /old_locus_tag="BSU09320"
     CDS             991772..992416
                     /gene="yhcZ"
                     /locus_tag="BSU_09330"
                     /old_locus_tag="BSU09330"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295, 16816187, 16267314, 20639339, 21335452"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295, 16816187,
                     16267314, 20639339, 21335452; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YhcY]"
                     /protein_id="NP_388814.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09330"
                     /db_xref="EnsemblGenomes-Tr:CAB12761"
                     /db_xref="GOA:O07528"
                     /db_xref="InterPro:IPR000792"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR016032"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13006"
                     /db_xref="UniProtKB/Swiss-Prot:O07528"
                     /translation="MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEE
                     TKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKAYQL
                     KDTEPEELVKTRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEI
                     ANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK*"
     gene            991772..992416
                     /gene="yhcZ"
                     /locus_tag="BSU_09330"
                     /old_locus_tag="BSU09330"
     CDS             992413..992937
                     /gene="azr"
                     /locus_tag="BSU_09340"
                     /old_locus_tag="BSU09340"
                     /EC_number="1.7.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15184374, 16816187,
                     20639339; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase, NAD(P)H-FMN and ferric iron
                     reductase (azoreductase)"
                     /protein_id="NP_388815.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09340"
                     /db_xref="EnsemblGenomes-Tr:CAB12762"
                     /db_xref="GOA:O07529"
                     /db_xref="InterPro:IPR005025"
                     /db_xref="InterPro:IPR029039"
                     /db_xref="PDB:1NNI"
                     /db_xref="PDB:2GSW"
                     /db_xref="PDB:3GFQ"
                     /db_xref="PDB:3GFR"
                     /db_xref="PDB:3GFS"
                     /db_xref="SubtiList:BG13007"
                     /db_xref="UniProtKB/Swiss-Prot:O07529"
                     /translation="MNMLVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNG
                     EAEQSELLKVQELKQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALL
                     AVAGGGKGGINALNNMRTVMRGVYANVIPKQLVLDPVHIDVENATVAENIKESIKELV
                     EELSMFAKAGNPGV*"
     gene            992413..992937
                     /gene="azr"
                     /locus_tag="BSU_09340"
                     /old_locus_tag="BSU09340"
     downshifts      992902
                     /Source="Nicolas_upshifts"
                     /id="D483"
                     /incds=0
                     /nref=72
                     /ntot=215
                     /MaxReadThrough="2.90096"
                     /MaxDrop="4.78561"
                     /score="27.1269177"
                     /energy="-17.2"
                     /TU="NA"
                     /idTUdmin="U734"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(992952..993194)
                     /gene="yhdB"
                     /locus_tag="BSU_09350"
                     /old_locus_tag="BSU09350"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388816.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09350"
                     /db_xref="EnsemblGenomes-Tr:CAB12763"
                     /db_xref="InterPro:IPR025431"
                     /db_xref="SubtiList:BG13008"
                     /db_xref="UniProtKB/Swiss-Prot:O07530"
                     /translation="MDYADYDKALYYTHRSQWDNLLILMVRTEDDLLSKRIEHFLHAY
                     HFEQDYAVLEKMLYSLLRYIDHATELTYEDQIALLT*"
     gene            complement(992952..993194)
                     /gene="yhdB"
                     /locus_tag="BSU_09350"
                     /old_locus_tag="BSU09350"
     downshifts      complement(992973)
                     /Source="Nicolas_upshifts"
                     /id="D484"
                     /incds=0
                     /nref=39
                     /ntot=84
                     /MaxReadThrough="-0.0235599999999998"
                     /MaxDrop="7.78706"
                     /score="12.0066876"
                     /energy="-17.2"
                     /TU="NA"
                     /idTUdmin="U735"
                     /TUdmin="-17"
                     /isTUend="TRUE"
     promotor_-10    complement(993230..993241)
                     /Source="Nicolas_upshift_promotors"
                     /id="U735"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.556443556443556"
                     /psig="0.556443556443556"
                     /xcortree=833
                     /SigmaFactorBS="attgctacccctttactgacgcagacggcaagttttgccCCG
                     TCAATaacagaggatgcgGCATAAACTAATcatgaacttctcacccaagaaaggagaa
                     g"
                     /listShort="yhdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(993241)
                     /Source="Nicolas_upshifts"
                     /id="U735"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.556443556443556"
                     /psig="0.556443556443556"
                     /xcortree=833
                     /SigmaFactorBS="attgctacccctttactgacgcagacggcaagttttgccCCG
                     TCAATaacagaggatgcgGCATAAACTAATcatgaacttctcacccaagaaaggagaa
                     g"
                     /listShort="yhdB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(993255..993262)
                     /Source="Nicolas_upshift_promotors"
                     /id="U735"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.556443556443556"
                     /psig="0.556443556443556"
                     /xcortree=833
                     /SigmaFactorBS="attgctacccctttactgacgcagacggcaagttttgccCCG
                     TCAATaacagaggatgcgGCATAAACTAATcatgaacttctcacccaagaaaggagaa
                     g"
                     /listShort="yhdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    993329..993335
                     /Source="Nicolas_upshift_promotors"
                     /id="U736"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=929
                     /SigmaFactorBS="aatatgagggagacataaaatcaaaatgccTGAATGAagata
                     tcgcttttGGTAAACCTATGagggaatatattctgggtacaggagactgaaaaaatga
                     a"
                     /listShort="yhdC, S325"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    993349..993360
                     /Source="Nicolas_upshift_promotors"
                     /id="U736"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=929
                     /SigmaFactorBS="aatatgagggagacataaaatcaaaatgccTGAATGAagata
                     tcgcttttGGTAAACCTATGagggaatatattctgggtacaggagactgaaaaaatga
                     a"
                     /listShort="yhdC, S325"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        993359
                     /Source="Nicolas_upshifts"
                     /id="U736"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=929
                     /SigmaFactorBS="aatatgagggagacataaaatcaaaatgccTGAATGAagata
                     tcgcttttGGTAAACCTATGagggaatatattctgggtacaggagactgaaaaaatga
                     a"
                     /listShort="yhdC, S325"
                     /GFF_Attribute="listLong"
     CDS             993395..993718
                     /gene="yhdC"
                     /locus_tag="BSU_09360"
                     /old_locus_tag="BSU09360"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_388817.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09360"
                     /db_xref="EnsemblGenomes-Tr:CAB12764"
                     /db_xref="InterPro:IPR024987"
                     /db_xref="SubtiList:BG13009"
                     /db_xref="UniProtKB/Swiss-Prot:O07531"
                     /translation="MKSLPYTIALLFCGLIIVSMAAKGHSTDTDESVQKWEQLAWSKI
                     QDEYKGASFSDYAYMGRTEVNDQQTKDVFRVTVRQKDDTFSVRAEVYFHPVTNHMISI
                     NVFRL*"
     gene            993395..993718
                     /gene="yhdC"
                     /locus_tag="BSU_09360"
                     /old_locus_tag="BSU09360"
     S_feature       993719..995585
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1011751_1013617"
                     /HighExp="S8, S5, S7, S6, S4, C30, Sw, ferm, S3, BC"
                     /AntisenseName="lytF"
                     /AntisenseCor="-0.65564579825076796"
                     /AntisenseRegPval="-33.700000000000003"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S325"
     CDS             complement(993760..995226)
                     /gene="lytF"
                     /locus_tag="BSU_09370"
                     /old_locus_tag="BSU09370"
                     /EC_number="3.4.-.-"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10206711, 14594841, 18761694, 18761696, 23091053,
                     25288647"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10206711, 14594841,
                     18761694, 18761696, 23091053, 25288647; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-D-glutamate-meso-diaminopimelate
                     muropeptidase (major autolysin, vegetative)"
                     /protein_id="NP_388818.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09370"
                     /db_xref="EnsemblGenomes-Tr:CAB12776"
                     /db_xref="GOA:O07532"
                     /db_xref="InterPro:IPR000064"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="SubtiList:BG13010"
                     /db_xref="UniProtKB/Swiss-Prot:O07532"
                     /translation="MKKKLAAGLTASAIVGTTLVVTPAEAATIKVKSGDSLWKLAQTY
                     NTSVAALTSANHLSTTVLSIGQTLTIPGSKSSTSSSTSSSTTKKSGSSVYTVKSGDSL
                     WLIANEFKMTVQELKKLNGLSSDLIRAGQKLKVSGTVSSSSSSSKKSNSNKSSSSSSK
                     SSSNKSSSSSSSTGTYKVQLGDSLWKIANKVNMSIAELKVLNNLKSDTIYVNQVLKTK
                     SSGSDTSSKDNSSKSNQTSATTKYTVKSGDSLWKIANNYNLTVQQIRNINNLKSDVLY
                     VGQVLKLTGKASSGSSSSSSSSSNASSGTTTTYTVKSGDSLWVIAQKFNVTAQQIREK
                     NNLKTDVLQVGQKLVISGKASSSSSSGSSNTTSSTSAKINTMISAAKAQLGVPYRWGG
                     TTPSGFDCSGFIYYVLNKVTSVSRLTAAGYWNTMKSVSQPAVGDFVFFSTYKAGPSHV
                     GIYLGNGEFINANDSGVVISNMNNSYWKQRYLGAKRYF*"
     gene            complement(993760..995226)
                     /gene="lytF"
                     /locus_tag="BSU_09370"
                     /old_locus_tag="BSU09370"
     downshifts      complement(993772)
                     /Source="Nicolas_upshifts"
                     /id="D485"
                     /incds=0
                     /nref=121
                     /ntot=216
                     /MaxReadThrough="2.34529"
                     /MaxDrop="4.33563"
                     /score="24.6732339"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U737"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     downshifts      complement(993859)
                     /Source="Nicolas_upshifts"
                     /id="D486"
                     /incds=1
                     /nref=1
                     /ntot=87
                     /MaxReadThrough="5.73069"
                     /MaxDrop="2.6306"
                     /score="24.6732339"
                     /energy="-14.2"
                     /TU="U737"
                     /idTUdmin="U737"
                     /TUdmin="-88"
                     /isTUend="FALSE"
     promotor_-10    complement(995266..995284)
                     /Source="Nicolas_upshift_promotors"
                     /id="U737"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2806
                     /SigmaFactorBS="ttgttaagataatttggctatttttataaaaagGCAAAACGa
                     tgagacaaatgtGCCGATATAAAAAAGAAACagcaaatgcaaaatcattgggggaaaa
                     a"
                     /listShort="lytF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(995278)
                     /Source="Nicolas_upshifts"
                     /id="U737"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2806
                     /SigmaFactorBS="ttgttaagataatttggctatttttataaaaagGCAAAACGa
                     tgagacaaatgtGCCGATATAAAAAAGAAACagcaaatgcaaaatcattgggggaaaa
                     a"
                     /listShort="lytF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(995298..995305)
                     /Source="Nicolas_upshift_promotors"
                     /id="U737"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2806
                     /SigmaFactorBS="ttgttaagataatttggctatttttataaaaagGCAAAACGa
                     tgagacaaatgtGCCGATATAAAAAAGAAACagcaaatgcaaaatcattgggggaaaa
                     a"
                     /listShort="lytF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(995379..995819)
                     /gene="nsrR"
                     /locus_tag="BSU_09380"
                     /old_locus_tag="BSU09380"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16885456, 19006327, 21091510, 26887943, 27778474,
                     28425466, 28439033"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16885456, 19006327,
                     21091510, 26887943, 27778474, 28425466, 28439033; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="NO-dependent activator of the ResDE regulon
                     (Fe-S NO binding site)"
                     /protein_id="NP_388819.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09380"
                     /db_xref="EnsemblGenomes-Tr:CAB12777"
                     /db_xref="GOA:O07573"
                     /db_xref="InterPro:IPR000944"
                     /db_xref="InterPro:IPR030489"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13011"
                     /db_xref="UniProtKB/Swiss-Prot:O07573"
                     /translation="MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMK
                     VIYRLGQLGYVETIRGRGGGIRLGMDPEDINIGEVVRKTEDDFNIVECFDANKNLCVI
                     SPVCGLKHVLNEALLAYLAVLDKYTLRDLVKNKEDIMKLLKMKE*"
     gene            complement(995379..995819)
                     /gene="nsrR"
                     /locus_tag="BSU_09380"
                     /old_locus_tag="BSU09380"
     downshifts      complement(995409)
                     /Source="Nicolas_upshifts"
                     /id="D487"
                     /incds=0
                     /nref=205
                     /ntot=265
                     /MaxReadThrough="3.11158"
                     /MaxDrop="6.87147"
                     /score="5.96186156"
                     /energy="-7.8"
                     /TU="U739"
                     /idTUdmin="U740"
                     /TUdmin="-10"
                     /isTUend="TRUE"
     promotor_-35    995807..995813
                     /Source="Nicolas_upshift_promotors"
                     /id="U738"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.904095904095904"
                     /psig="0.904095904095904"
                     /xcortree=408
                     /SigmaFactorBS="cagaaaaatcaacactcttaatgaataatctgtataatTGGT
                     TAActtcataataagaCCTCAGAATAAGacattttctatatcttatcataatcgattg
                     a"
                     /listShort="S326"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    995827..995838
                     /Source="Nicolas_upshift_promotors"
                     /id="U738"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.904095904095904"
                     /psig="0.904095904095904"
                     /xcortree=408
                     /SigmaFactorBS="cagaaaaatcaacactcttaatgaataatctgtataatTGGT
                     TAActtcataataagaCCTCAGAATAAGacattttctatatcttatcataatcgattg
                     a"
                     /listShort="S326"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       995829..995939
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1013861_1013971"
                     /HighExp="S8, S7, S4, Sw, S5, S6, BC, B60, nit, Pyr"
                     /AntisenseName="ygxB"
                     /AntisenseCor="-0.211236686077168"
                     /AntisenseRegPval="-3.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig="0.904"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S326"
     upshifts        995829
                     /Source="Nicolas_upshifts"
                     /id="U738"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.904095904095904"
                     /psig="0.904095904095904"
                     /xcortree=408
                     /SigmaFactorBS="cagaaaaatcaacactcttaatgaataatctgtataatTGGT
                     TAActtcataataagaCCTCAGAATAAGacattttctatatcttatcataatcgattg
                     a"
                     /listShort="S326"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(995841..995860)
                     /Source="Nicolas_upshift_promotors"
                     /id="U739"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3120
                     /SigmaFactorBS="catgcacccagctgggtgcatgttttttaattcctttttTTT
                     CATTtttcaatcgatTATGATAAGATATAGAAAATgtcttattctgaggtcttattat
                     g"
                     /listShort="nsrR, lytF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(995857)
                     /Source="Nicolas_upshifts"
                     /id="U739"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3120
                     /SigmaFactorBS="catgcacccagctgggtgcatgttttttaattcctttttTTT
                     CATTtttcaatcgatTATGATAAGATATAGAAAATgtcttattctgaggtcttattat
                     g"
                     /listShort="nsrR, lytF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(995872..995878)
                     /Source="Nicolas_upshift_promotors"
                     /id="U739"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig=1
                     /xcortree=3120
                     /SigmaFactorBS="catgcacccagctgggtgcatgttttttaattcctttttTTT
                     CATTtttcaatcgatTATGATAAGATATAGAAAATgtcttattctgaggtcttattat
                     g"
                     /listShort="nsrR, lytF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      995898
                     /Source="Nicolas_upshifts"
                     /id="D488"
                     /incds=0
                     /nref=10
                     /ntot=68
                     /MaxReadThrough="1.05981"
                     /MaxDrop="6.25571"
                     /score="22.5171081"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U738"
                     /TUdmin=3
                     /isTUend="TRUE"
     CDS             complement(995926..997584)
                     /gene="ygxB"
                     /locus_tag="BSU_09390"
                     /old_locus_tag="BSU09390"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388820.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09390"
                     /db_xref="EnsemblGenomes-Tr:CAB12778"
                     /db_xref="GOA:P37874"
                     /db_xref="InterPro:IPR008910"
                     /db_xref="SubtiList:BG10181"
                     /db_xref="UniProtKB/Swiss-Prot:P37874"
                     /translation="MYEPARQKMIVSLGQEKIPPAHSSVCLLDKWVNTHHTTKKERYQ
                     LNVADVFSSYLSKLPNVIIALLVLLIGWAIAKIIEKAVYKGLSKTKIDDKLFAGKKPS
                     RYSSEKVISKVVYFIALIIVFILFFNILHLTTVASPFVSMLSAIAAAIPSVLKAGLIL
                     LLGWAAASVLSFLVKKIGMKLNTSDKLRKWNLVSEGKDIHQAVNTASQIVFYLVLLVF
                     LPGVLSSLKISGISGPFTNMMESVLAFLPKLFAAALIVLIGWLVARLVRDIITNFLAS
                     IGTERFAARMGLSIYLKDTSLSAVIGTIAYVLIMIPVVISALDQLDVAGISKPAVSML
                     NTILNMLPNIMIAIVLVLAGIWAGKWVKSMVSGLLHRAGFDSVLGKMGMEAGTPAKLS
                     LSQVVGMIAQIIVILLFTAEALQIVRLHFLVEIATGIIAYLPNVLVAVFILGLGLYAG
                     ELVRKVLASMIKGQEFKSLAPIAKYTIIALAFFMALDQLGVAATIVNSAFIIVLSGFA
                     LAFGLSFGLGGKDFASRYLSTFERKMQNTEIEKNRKNQNPPNDM*"
     gene            complement(995926..997584)
                     /gene="ygxB"
                     /locus_tag="BSU_09390"
                     /old_locus_tag="BSU09390"
     downshifts      complement(995931)
                     /Source="Nicolas_upshifts"
                     /id="D489"
                     /incds=0
                     /nref=6
                     /ntot=40
                     /MaxReadThrough="8.34865"
                     /MaxDrop="5.55332"
                     /score="-5.46969987"
                     /energy="-14.5"
                     /TU="U740"
                     /idTUdmin="U740"
                     /TUdmin="-532"
                     /isTUend="FALSE"
     promotor_-10    complement(997475..997493)
                     /Source="Nicolas_upshift_promotors"
                     /id="U740"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=189
                     /SigmaFactorBS="agtctcactcgggcaagaaaaaattcccccggcacattcatc
                     TGTTTGCttattggataagtGGGTAAACACACACCATACtacgaaaaaggagcgatac
                     c"
                     /listShort="nsrR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(997495)
                     /Source="Nicolas_upshifts"
                     /id="U740"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=189
                     /SigmaFactorBS="agtctcactcgggcaagaaaaaattcccccggcacattcatc
                     TGTTTGCttattggataagtGGGTAAACACACACCATACtacgaaaaaggagcgatac
                     c"
                     /listShort="nsrR"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(997507..997513)
                     /Source="Nicolas_upshift_promotors"
                     /id="U740"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=189
                     /SigmaFactorBS="agtctcactcgggcaagaaaaaattcccccggcacattcatc
                     TGTTTGCttattggataagtGGGTAAACACACACCATACtacgaaaaaggagcgatac
                     c"
                     /listShort="nsrR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    997556..997561
                     /Source="Nicolas_upshift_promotors"
                     /id="U741"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1163
                     /SigmaFactorBS="gaattttttcttgcccgagtgagactATCATCttttgtctgg
                     cgggcTCATACATTATAGATAAGTccaagtaggggggattcggttgaacgcggaggag
                     a"
                     /listShort="spoVR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    997577..997595
                     /Source="Nicolas_upshift_promotors"
                     /id="U741"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1163
                     /SigmaFactorBS="gaattttttcttgcccgagtgagactATCATCttttgtctgg
                     cgggcTCATACATTATAGATAAGTccaagtaggggggattcggttgaacgcggaggag
                     a"
                     /listShort="spoVR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        997590
                     /Source="Nicolas_upshifts"
                     /id="U741"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1163
                     /SigmaFactorBS="gaattttttcttgcccgagtgagactATCATCttttgtctgg
                     cgggcTCATACATTATAGATAAGTccaagtaggggggattcggttgaacgcggaggag
                     a"
                     /listShort="spoVR"
                     /GFF_Attribute="listLong"
     CDS             997615..999021
                     /gene="spoVR"
                     /locus_tag="BSU_09400"
                     /old_locus_tag="BSU09400"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:8144469, 14680823"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8144469, 14680823;
                     Product type ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="involved in spore cortex synthesis (stage V
                     sporulation, conserved in non sporulating bacteria"
                     /protein_id="NP_388821.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09400"
                     /db_xref="EnsemblGenomes-Tr:CAB12779"
                     /db_xref="GOA:P37875"
                     /db_xref="InterPro:IPR007390"
                     /db_xref="SubtiList:BG10182"
                     /db_xref="UniProtKB/Swiss-Prot:P37875"
                     /translation="MNAEEKKGLQRAIEEITEIAKGFGLDFYPMRYEICPAEIIYTFG
                     AYGMPTRFSHWSFGKQFHKMKLHYDLGLSKIYELVINSDPCYAFLLDSNSLIQNKLIV
                     AHVLAHCDFFKNNCRFQNTKRDMVESMAATAERIKHYEQVHGIKEVESFLDAILSIQE
                     HIDPSLVRPKLQWSVDDEEEEIEEAATPYDDLWSLDEKKPKKQVKKSKKPFPPRPEKD
                     ILLFIEEHSRELEPWQRDILTMMREEMLYFWPQLETKIMNEGWASYWHQRIIRELDLT
                     SDEAIEFAKLNAGVVQPSKTGINPYYLGLKIFEDIEKRYNNPTEEMKKMGVQPDSGRE
                     KMFEVREIESDISFIRNYLTKELVMREDLYLFQKQGRDYKIIDKQWKSVRDQLVSMRV
                     NGGFPYLTVNDGDYMKNNELYIKHWYEGIELDLKYLEKVLPYLFQLWGRSVHIESVLE
                     DKEVMFSYDGKGVHRRYL*"
     gene            997615..999021
                     /gene="spoVR"
                     /locus_tag="BSU_09400"
                     /old_locus_tag="BSU09400"
     downshifts      999001
                     /Source="Nicolas_upshifts"
                     /id="D490"
                     /incds=0
                     /nref=43
                     /ntot=84
                     /MaxReadThrough="1.30719"
                     /MaxDrop="6.74388"
                     /score="26.4488835"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U741"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(999051..1000436)
                     /gene="phoA"
                     /locus_tag="BSU_09410"
                     /old_locus_tag="BSU09410"
                     /EC_number="3.1.3.1"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8830275, 10913081, 12897025, 16491025"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8830275, 10913081,
                     12897025, 16491025; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase A"
                     /protein_id="NP_388822.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09410"
                     /db_xref="EnsemblGenomes-Tr:CAB12780"
                     /db_xref="GOA:P19406"
                     /db_xref="InterPro:IPR001952"
                     /db_xref="InterPro:IPR017849"
                     /db_xref="InterPro:IPR017850"
                     /db_xref="InterPro:IPR018299"
                     /db_xref="SubtiList:BG10183"
                     /db_xref="UniProtKB/Swiss-Prot:P19406"
                     /translation="MKKMSLFQNMKSKLLPIAAVSVLTAGIFAGAELQQTEKASAKKQ
                     DKAEIRNVIVMIGDGMGTPYIRAYRSMKNNGDTPNNPKLTEFDRNLTGMMMTHPDDPD
                     YNITDSAAAGTALATGVKTYNNAIGVDKNGKKVKSVLEEAKQQGKSTGLVATSEINHA
                     TPAAYGAHNESRKNMDQIANSYMDDKIKGKHKIDVLLGGGKSYFNRKDRNLTKEFKQA
                     GYSYVTTKQALKKNKDQQVLGLFADGGLAKALDRDSKTPSLKDMTVSAIDRLNQNKKG
                     FFLMVEGSQIDWAAHDNDTVGAMSEVKDFEQAYKAAIEFAKKDKHTLVIATADHTTGG
                     FTIGANGEKNWHAEPILSAKKTPEFMAKKISEGKPVKDVLARYANLKVTSEEIKSVEA
                     AAQADKSKGASKAIIKIFNTRSNSGWTSTDHTGEEVPVYAYGPGKEKFRGLINNTDQA
                     NIIFKILKTGK*"
     gene            complement(999051..1000436)
                     /gene="phoA"
                     /locus_tag="BSU_09410"
                     /old_locus_tag="BSU09410"
     downshifts      complement(999077)
                     /Source="Nicolas_upshifts"
                     /id="D491"
                     /incds=0
                     /nref=51
                     /ntot=178
                     /MaxReadThrough="1.90638"
                     /MaxDrop="5.795"
                     /score="22.2126775"
                     /energy="-13.2"
                     /TU="NA"
                     /idTUdmin="U742"
                     /TUdmin=0
                     /isTUend="TRUE"
     upshifts        complement(1000463)
                     /Source="Nicolas_upshifts"
                     /id="U742"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.94105894105894"
                     /psig="0.035964035964036"
                     /xcortree=8
                     /SigmaFactorBS="acaaggctttacttattgtttacatgatcaacagccgcaTTT
                     AACAAAGTTtccctaacatgataaacggaatacattaaaggaggcatgaaaaaaatga
                     g"
                     /listShort="phoA"
                     /GFF_Attribute="listLong"
     S_feature       complement(1000465..1001996)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1018497_1020028_c"
                     /HighExp="Etha, Salt, B60, Heat, M9-stat, T5.0H, T0.30H,
                     T4.0H, T3.30H, T2.30H"
                     /AntisenseName="lytE"
                     /AntisenseCor="-0.65081062481616203"
                     /AntisenseRegPval="-33.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY, SigA"
                     /TUshortPSig="0.966, 0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S327"
     misc_feature    complement(1000473..1000484)
                     /Source="Nicolas_upshift_promotors"
                     /id="U742"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.94105894105894"
                     /psig="0.035964035964036"
                     /xcortree=8
                     /SigmaFactorBS="acaaggctttacttattgtttacatgatcaacagccgcaTTT
                     AACAAAGTTtccctaacatgataaacggaatacattaaaggaggcatgaaaaaaatga
                     g"
                     /listShort="phoA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-35    1000592..1000599
                     /Source="Nicolas_upshift_promotors"
                     /id="U743"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.564435564435564"
                     /psig="0.999000999001"
                     /xcortree=3050
                     /SigmaFactorBS="ttatttgatgtaaagcattcatttttcagaaaaaTCTTTACC
                     tctctgtctttgCATGATATGTTTGTTTAAATaaaaaaactgcggataaccacagctc
                     t"
                     /listShort="S328, lytE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1000612..1000631
                     /Source="Nicolas_upshift_promotors"
                     /id="U743"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.564435564435564"
                     /psig="0.999000999001"
                     /xcortree=3050
                     /SigmaFactorBS="ttatttgatgtaaagcattcatttttcagaaaaaTCTTTACC
                     tctctgtctttgCATGATATGTTTGTTTAAATaaaaaaactgcggataaccacagctc
                     t"
                     /listShort="S328, lytE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1000618..1000905
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1018650_1018937"
                     /HighExp="T-5.40H, Cold, LoTm, T-4.40H, UNK1, T5.0H,
                     GM-0.1, T3.30H, S1, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S328"
     upshifts        1000618
                     /Source="Nicolas_upshifts"
                     /id="U743"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.564435564435564"
                     /psig="0.999000999001"
                     /xcortree=3050
                     /SigmaFactorBS="ttatttgatgtaaagcattcatttttcagaaaaaTCTTTACC
                     tctctgtctttgCATGATATGTTTGTTTAAATaaaaaaactgcggataaccacagctc
                     t"
                     /listShort="S328, lytE"
                     /GFF_Attribute="listLong"
     promotor_-35    1000868..1000871
                     /Source="Nicolas_upshift_promotors"
                     /id="U744"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.75924075924076"
                     /psig="0.971028971028971"
                     /xcortree=3027
                     /SigmaFactorBS="atttgtcacatgaagtcaagaCTATttctgatgggaatcTAT
                     CCTTATAATAGAAATCAataagattaatttaaaaaaagagatacatatatatagagtt
                     a"
                     /listShort="lytE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1000886..1000905
                     /Source="Nicolas_upshift_promotors"
                     /id="U744"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.75924075924076"
                     /psig="0.971028971028971"
                     /xcortree=3027
                     /SigmaFactorBS="atttgtcacatgaagtcaagaCTATttctgatgggaatcTAT
                     CCTTATAATAGAAATCAataagattaatttaaaaaaagagatacatatatatagagtt
                     a"
                     /listShort="lytE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1000907
                     /Source="Nicolas_upshifts"
                     /id="U744"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.75924075924076"
                     /psig="0.971028971028971"
                     /xcortree=3027
                     /SigmaFactorBS="atttgtcacatgaagtcaagaCTATttctgatgggaatcTAT
                     CCTTATAATAGAAATCAataagattaatttaaaaaaagagatacatatatatagagtt
                     a"
                     /listShort="lytE"
                     /GFF_Attribute="listLong"
     CDS             1000966..1001970
                     /gene="lytE"
                     /locus_tag="BSU_09420"
                     /old_locus_tag="BSU09420"
                     /EC_number="3.4.-.-"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:16855244, 16950129, 9457885, 21541672, 22139507,
                     27002131"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16855244, 16950129,
                     9457885, 21541672, 22139507, 27002131; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall dl-endopeptidase;
                     phosphatase-associated protein (major autolysin)"
                     /protein_id="NP_388823.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09420"
                     /db_xref="EnsemblGenomes-Tr:CAB12781"
                     /db_xref="GOA:P54421"
                     /db_xref="InterPro:IPR000064"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="SubtiList:BG11406"
                     /db_xref="UniProtKB/Swiss-Prot:P54421"
                     /translation="MKKQIITATTAVVLGSTLFAGAASAQSIKVKKGDTLWDLSRKYD
                     TTISKIKSENHLRSDIIYVGQTLSINGKSTSSKSSSSSSSSSTYKVKSGDSLWKISKK
                     YGMTINELKKLNGLKSDLLRVGQVLKLKGSTSSSSSSSSKVSSSSTSTYKVKSGDSLS
                     KIASKYGTTVSKLKSLNGLKSDVIYVNQVLKVKGTSTSSSKPASSSSSSSSKTSSTSL
                     NVSKLVSDAKALVGTPYKWGGTTTSGFDCSGFIWYVLNKQTSVGRTSTAGYWSSMKSI
                     ASPSVGDFVFFTTYKSGPSHMGIYIGNNSFIHAGSDGVQISSLNNSYWKPRYLGAKRF
                     *"
     gene            1000966..1001970
                     /gene="lytE"
                     /locus_tag="BSU_09420"
                     /old_locus_tag="BSU09420"
     downshifts      1001832
                     /Source="Nicolas_upshifts"
                     /id="D492"
                     /incds=1
                     /nref=1
                     /ntot=117
                     /MaxReadThrough="6.89938"
                     /MaxDrop="2.1687"
                     /score="26.3320532"
                     /energy="-9.8"
                     /TU="U743,U744"
                     /idTUdmin="U743"
                     /TUdmin="-132"
                     /isTUend="FALSE"
     downshifts      1001962
                     /Source="Nicolas_upshifts"
                     /id="D493"
                     /incds=0
                     /nref=53
                     /ntot=190
                     /MaxReadThrough="3.64545"
                     /MaxDrop="6.08377"
                     /score="26.3320532"
                     /energy="-9.8"
                     /TU="U744"
                     /idTUdmin="U743"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     upshifts        complement(1001996)
                     /Source="Nicolas_upshifts"
                     /id="U745"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=1640
                     /SigmaFactorBS="acattttcatttttaggAGCAACCAAAacgcctgtgctCCGT
                     CTAATGAAAAAAacccgttccaatgaacgggttttctctaaaaattagaatcttttcg
                     c"
                     /listShort="S327, phoA"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1002003..1002018)
                     /Source="Nicolas_upshift_promotors"
                     /id="U745"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=1640
                     /SigmaFactorBS="acattttcatttttaggAGCAACCAAAacgcctgtgctCCGT
                     CTAATGAAAAAAacccgttccaatgaacgggttttctctaaaaattagaatcttttcg
                     c"
                     /listShort="S327, phoA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      1002008
                     /Source="Nicolas_upshifts"
                     /id="D494"
                     /incds=0
                     /nref=1
                     /ntot=47
                     /MaxReadThrough="2.99"
                     /MaxDrop="3.76174"
                     /score="26.3320532"
                     /energy="-9.8"
                     /TU="U744"
                     /idTUdmin="U743"
                     /TUdmin=44
                     /isTUend="FALSE"
     promotor_-35    complement(1002030..1002039)
                     /Source="Nicolas_upshift_promotors"
                     /id="U745"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.966033966033966"
                     /psig="0.966033966033966"
                     /xcortree=1640
                     /SigmaFactorBS="acattttcatttttaggAGCAACCAAAacgcctgtgctCCGT
                     CTAATGAAAAAAacccgttccaatgaacgggttttctctaaaaattagaatcttttcg
                     c"
                     /listShort="S327, phoA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1002041..1002916)
                     /gene="citR"
                     /locus_tag="BSU_09430"
                     /old_locus_tag="BSU09430"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8045899, 10869065"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8045899, 10869065;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CitR (LysR family)"
                     /protein_id="NP_388824.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09430"
                     /db_xref="EnsemblGenomes-Tr:CAB12782"
                     /db_xref="GOA:P39127"
                     /db_xref="InterPro:IPR000847"
                     /db_xref="InterPro:IPR005119"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG10853"
                     /db_xref="UniProtKB/Swiss-Prot:P39127"
                     /translation="MDFKWLHTFVTAAKYENFRKTAETLFLSQPTVTVHIKQLEKEIS
                     CKLFERKGRQIQLTDEGRAYLPYALRLLDDYENSMAELHRVRQGYSQTLQLAVSPLIA
                     DTVLPSVMKRYTAMNTETEMAVTIFESAEIASLIKAGEADIGLSCLKVQSSSLSCHCL
                     YKDPVVLVAPPDKRFIEDNEIDAKEVLEQYLLLTHNHPDYWDDLLRQVRMTFPFVRTM
                     KVTQTHITKRFIKEGLGVSFLPLSTVKRELAEKQMIRIPYQSVQLPYAGAYAIALYEN
                     KKEKKFLDFLSHFHF*"
     gene            complement(1002041..1002916)
                     /gene="citR"
                     /locus_tag="BSU_09430"
                     /old_locus_tag="BSU09430"
     promotor_-35    1002969..1002970
                     /Source="Nicolas_upshift_promotors"
                     /id="U747"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.424575424575425"
                     /psig="0.995004995004995"
                     /xcortree=3081
                     /SigmaFactorBS="atatttttaattaattccctttaaaatattgaTTatttttta
                     aatattatATTTACTATAATAACAGAAAaggatagggggaatacaaatggtacattac
                     g"
                     /listShort="citA, yhdF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1002982..1003001)
                     /Source="Nicolas_upshift_promotors"
                     /id="U746"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.387612387612388"
                     /psig="0.992007992007992"
                     /xcortree=1894
                     /SigmaFactorBS="tccctttaatccgtaatgtaccatttgTATTCCccctatcct
                     tttctGTTATTATAGTAAATATAATatttaaaaaataatcaatattttaaagggaatt
                     a"
                     /listShort="citR, S327"
                     /listLong="phoA"
                     /label="promotor_-10"
     promotor_-10    1002987..1003006
                     /Source="Nicolas_upshift_promotors"
                     /id="U747"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.424575424575425"
                     /psig="0.995004995004995"
                     /xcortree=3081
                     /SigmaFactorBS="atatttttaattaattccctttaaaatattgaTTatttttta
                     aatattatATTTACTATAATAACAGAAAaggatagggggaatacaaatggtacattac
                     g"
                     /listShort="citA, yhdF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1002988)
                     /Source="Nicolas_upshifts"
                     /id="U746"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.387612387612388"
                     /psig="0.992007992007992"
                     /xcortree=1894
                     /SigmaFactorBS="tccctttaatccgtaatgtaccatttgTATTCCccctatcct
                     tttctGTTATTATAGTAAATATAATatttaaaaaataatcaatattttaaagggaatt
                     a"
                     /listShort="citR, S327"
                     /listLong="phoA"
     upshifts        1002997
                     /Source="Nicolas_upshifts"
                     /id="U747"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.424575424575425"
                     /psig="0.995004995004995"
                     /xcortree=3081
                     /SigmaFactorBS="atatttttaattaattccctttaaaatattgaTTatttttta
                     aatattatATTTACTATAATAACAGAAAaggatagggggaatacaaatggtacattac
                     g"
                     /listShort="citA, yhdF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1003016..1003021)
                     /Source="Nicolas_upshift_promotors"
                     /id="U746"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.387612387612388"
                     /psig="0.992007992007992"
                     /xcortree=1894
                     /SigmaFactorBS="tccctttaatccgtaatgtaccatttgTATTCCccctatcct
                     tttctGTTATTATAGTAAATATAATatttaaaaaataatcaatattttaaagggaatt
                     a"
                     /listShort="citR, S327"
                     /listLong="phoA"
                     /label="promotor_-35"
     CDS             1003025..1004125
                     /gene="citA"
                     /locus_tag="BSU_09440"
                     /old_locus_tag="BSU09440"
                     /EC_number="2.3.3.16"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:4211224, 8045898, 8045899"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 4211224, 8045898,
                     8045899; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase I"
                     /protein_id="NP_388825.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09440"
                     /db_xref="EnsemblGenomes-Tr:CAB12783"
                     /db_xref="GOA:P39119"
                     /db_xref="InterPro:IPR002020"
                     /db_xref="InterPro:IPR016142"
                     /db_xref="InterPro:IPR016143"
                     /db_xref="InterPro:IPR019810"
                     /db_xref="InterPro:IPR024176"
                     /db_xref="InterPro:IPR036969"
                     /db_xref="PDB:2C6X"
                     /db_xref="SubtiList:BG10854"
                     /db_xref="UniProtKB/Swiss-Prot:P39119"
                     /translation="MVHYGLKGITCVETSISHIDGEKGRLIYRGHHAKDIALNHSFEE
                     AAYLILFGKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALG
                     ENTYTFHPKTEEAIRLIAITPSIIAYRKRWTRGEQAIAPSSQYGHVENYYYMLTGEQP
                     SEAKKKALETYMILATEHGMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPS
                     AVTKMLEDIGEKEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGND
                     RDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDFDDELFTPTFSASRMV
                     GWCAHVLEQAENNMIFRPSAQYTGAIPEEVLS*"
     gene            1003025..1004125
                     /gene="citA"
                     /locus_tag="BSU_09440"
                     /old_locus_tag="BSU09440"
     promotor_-35    1004136..1004142
                     /Source="Nicolas_upshift_promotors"
                     /id="U748"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=256
                     /SigmaFactorBS="attcccgaggaagttctttcataacatattttggCGTTTATt
                     catttctgtcgtgTGGTAACGTTCAGTATCAAccacatgtctaggagtgatgaatgtg
                     a"
                     /listShort="yhdF, S329, ctrA, yhdH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1004157..1004175
                     /Source="Nicolas_upshift_promotors"
                     /id="U748"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=256
                     /SigmaFactorBS="attcccgaggaagttctttcataacatattttggCGTTTATt
                     catttctgtcgtgTGGTAACGTTCAGTATCAAccacatgtctaggagtgatgaatgtg
                     a"
                     /listShort="yhdF, S329, ctrA, yhdH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1004162
                     /Source="Nicolas_upshifts"
                     /id="U748"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=256
                     /SigmaFactorBS="attcccgaggaagttctttcataacatattttggCGTTTATt
                     catttctgtcgtgTGGTAACGTTCAGTATCAAccacatgtctaggagtgatgaatgtg
                     a"
                     /listShort="yhdF, S329, ctrA, yhdH"
                     /GFF_Attribute="listLong"
     CDS             1004199..1005068
                     /gene="yhdF"
                     /locus_tag="BSU_09450"
                     /old_locus_tag="BSU09450"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10482513, 18643936;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NAD(P)-dependent dehydrogenase"
                     /protein_id="NP_388826.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09450"
                     /db_xref="EnsemblGenomes-Tr:CAB12784"
                     /db_xref="GOA:O07575"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13012"
                     /db_xref="UniProtKB/Swiss-Prot:O07575"
                     /translation="MNPMDRQTEGQEPQHQDRQPGIESKMNPLPLSEDEDYRGSGKLK
                     GKVAIITGGDSGIGRAAAIAFAKEGADISILYLDEHSDAEETRKRIEKENVRCLLIPG
                     DVGDENHCEQAVQQTVDHFGKLDILVNNAAEQHPQDSILNISTEQLEKTFRTNIFSMF
                     HMTKKALPHLQEGCAIINTTSITAYEGDTALIDYSSTKGAIVSFTRSMAKSLADKGIR
                     VNAVAPGPIWTPLIPATFPEEKVKQHGLDTPMGRPGQPVEHAGAYVLLASDESSYMTG
                     QTIHVNGGRFIST*"
     gene            1004199..1005068
                     /gene="yhdF"
                     /locus_tag="BSU_09450"
                     /old_locus_tag="BSU09450"
     downshifts      1005076
                     /Source="Nicolas_upshifts"
                     /id="D495"
                     /incds=0
                     /nref=27
                     /ntot=130
                     /MaxReadThrough="8.65426"
                     /MaxDrop="6.48064"
                     /score="18.1511963"
                     /energy="-8.2"
                     /TU="U748"
                     /idTUdmin="U747"
                     /TUdmin=9
                     /isTUend="TRUE"
     promotor_-35    1005153..1005156
                     /Source="Nicolas_upshift_promotors"
                     /id="U749"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.597402597402597"
                     /psig="0.998001998001998"
                     /xcortree=2903
                     /SigmaFactorBS="tgaaaaatttcaaaataaaaaatttgtcgatttttctaacaa
                     tttTGTTttcatttttgcaatTTTATATATAATATTGAGTAggagaaaggaatgattc
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1005168
                     /Source="Nicolas_upshifts"
                     /id="U749"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.597402597402597"
                     /psig="0.998001998001998"
                     /xcortree=2903
                     /SigmaFactorBS="tgaaaaatttcaaaataaaaaatttgtcgatttttctaacaa
                     tttTGTTttcatttttgcaatTTTATATATAATATTGAGTAggagaaaggaatgattc
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
     promotor_-10    1005171..1005190
                     /Source="Nicolas_upshift_promotors"
                     /id="U749"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.597402597402597"
                     /psig="0.998001998001998"
                     /xcortree=2903
                     /SigmaFactorBS="tgaaaaatttcaaaataaaaaatttgtcgatttttctaacaa
                     tttTGTTttcatttttgcaatTTTATATATAATATTGAGTAggagaaaggaatgattc
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_feature    1005216..1005235
                     /Source="Nicolas_upshift_promotors"
                     /id="U750"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.522477522477522"
                     /xcortree=652
                     /SigmaFactorBS="tttttgcaattttatatataatattgagtaggagaaaggaat
                     gattcgcgaccagTACAAATATAGTAGAAAAAAaagaataatgaccattgttactcat
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1005221..1005317
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1023253_1023349"
                     /HighExp="Etha, T2.30H, T-0.40H, T2.0H, T1.30H, S1,
                     GM-0.2, T3.0H, T-1.40H, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.27332800000000002"
                     /TUshortSig="SigA, SigA, SigB"
                     /TUshortPSig="0.522, 0.998, 0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S329"
     upshifts        1005221
                     /Source="Nicolas_upshifts"
                     /id="U750"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.522477522477522"
                     /xcortree=652
                     /SigmaFactorBS="tttttgcaattttatatataatattgagtaggagaaaggaat
                     gattcgcgaccagTACAAATATAGTAGAAAAAAaagaataatgaccattgttactcat
                     g"
                     /listShort="S329, ctrA"
                     /GFF_Attribute="listLong"
     CDS             1005318..1006715
                     /gene="bcaP"
                     /locus_tag="BSU_09460"
                     /old_locus_tag="BSU09460"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16621821, 16850406, 21097623, 25645558"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16621821,
                     16850406, 21097623, 25645558; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter or
                     methylthioribose-degradation metabolite exporter"
                     /protein_id="NP_388827.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09460"
                     /db_xref="EnsemblGenomes-Tr:CAB12785"
                     /db_xref="GOA:O07576"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="InterPro:IPR004758"
                     /db_xref="SubtiList:BG13013"
                     /db_xref="UniProtKB/Swiss-Prot:O07576"
                     /translation="MKGSVFRKKSIQDLIAATSGEKSLKRELGAFDLTLLGIGAIIGT
                     GIFVLTGTGAVTAGPGLTISFVVAALACLFAALSYAEFASSVPVSGSVYTFTYATLGE
                     LMAFIIGWDLILEYMLAVSAVSVGWSGYFQSFLSGLGIHLPVALTAAPGAVKGTFTLF
                     NLPAFVIVMAITYLLYLGIKESKRVNNIMVILKILVVLLFIAVAAVYVKPHNWQPFMP
                     MGFGGVFSAAALVFFAFIGFDAVSSAAEETKNPAKDLPKGIIFSLLVCTILYVTVSAI
                     MTGVIPFAQFAGVDHPVSLVLQSAGQNWVAGIIDIGAVLGMTTVMLVMLYGQTRVMFA
                     MSRDGLVPGSLSKVHPKHKTPYVATWFFGTMSALLGSLVPLDELAKLVNIGTLSAFVL
                     ISVAVIVLRKKQPDLPRAFKCPGVPVIPGLAILFCLFLILNLGWVTIVRFLVWLLIGL
                     VIYFLYSRKHSKLNQ*"
     gene            1005318..1006715
                     /gene="bcaP"
                     /locus_tag="BSU_09460"
                     /old_locus_tag="BSU09460"
     downshifts      1006695
                     /Source="Nicolas_upshifts"
                     /id="D496"
                     /incds=0
                     /nref=116
                     /ntot=188
                     /MaxReadThrough="3.41176"
                     /MaxDrop="5.29633"
                     /score="5.08283681"
                     /energy="-12.3"
                     /TU="U748,U749"
                     /idTUdmin="U750"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1006776..1006780
                     /Source="Nicolas_upshift_promotors"
                     /id="U751"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig=1
                     /xcortree=2512
                     /SigmaFactorBS="ggccgcctcttttctgttcttggcaaatgaatcTATAGaaat
                     gaagacaaaaaTAAGAGATAATATAGGCTGGaaaggaagtgacgtttattgtctgagc
                     a"
                     /listShort="yhdH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1006796..1006815
                     /Source="Nicolas_upshift_promotors"
                     /id="U751"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig=1
                     /xcortree=2512
                     /SigmaFactorBS="ggccgcctcttttctgttcttggcaaatgaatcTATAGaaat
                     gaagacaaaaaTAAGAGATAATATAGGCTGGaaaggaagtgacgtttattgtctgagc
                     a"
                     /listShort="yhdH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1006803
                     /Source="Nicolas_upshifts"
                     /id="U751"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig=1
                     /xcortree=2512
                     /SigmaFactorBS="ggccgcctcttttctgttcttggcaaatgaatcTATAGaaat
                     gaagacaaaaaTAAGAGATAATATAGGCTGGaaaggaagtgacgtttattgtctgagc
                     a"
                     /listShort="yhdH"
                     /GFF_Attribute="listLong"
     CDS             1006833..1008188
                     /gene="yhdH"
                     /locus_tag="BSU_09470"
                     /old_locus_tag="BSU09470"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     17114254; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sodium-dependent transporter"
                     /protein_id="NP_388828.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09470"
                     /db_xref="EnsemblGenomes-Tr:CAB12786"
                     /db_xref="GOA:O07577"
                     /db_xref="InterPro:IPR000175"
                     /db_xref="SubtiList:BG13014"
                     /db_xref="UniProtKB/Swiss-Prot:O07577"
                     /translation="MSEQKPVQWASKIGFVMAAAGSAIGLGAIWKFPYVAGTNGGGAF
                     FLIFVLFTILLGYPLLVGEFIFGRRNQTNAIDAYKKEAPRSAWFLTGWIGVAACFLVL
                     SFYSVIGGWILLYIVKTASGSLSGLSQAQYGALFASIIQNPVQTLAAQLVFMALTVLV
                     VARGVQKGIERVSAVMMPILFLLFILLVLRSLTLNGAMEGVKFLLVPHFGDLTPESIL
                     FALGQAFFTLTLGVSVMVTYSSYLPKTQNIPRSAASIVLMNIIVTLLAGLAIFPAVFS
                     FGFQPNEGPTLLFTVLPAVFEQLPFGTLFFIGFLVAFLFAALTSAFSMVEIIVATIGK
                     GDEKKRKKLSWTSGLLIFLVGIPCCLSYGVLSDVHLFGKTFFDIADFTVSNVLMPSGA
                     LLISLFIPLKISKSELLAEMRNGSNAGKAFFYTWFYLLRFIVPLAIIIVFLNLIGILS
                     F*"
     gene            1006833..1008188
                     /gene="yhdH"
                     /locus_tag="BSU_09470"
                     /old_locus_tag="BSU09470"
     downshifts      1008169
                     /Source="Nicolas_upshifts"
                     /id="D497"
                     /incds=0
                     /nref=184
                     /ntot=244
                     /MaxReadThrough="1.73756"
                     /MaxDrop="6.09379"
                     /score="40.1809389"
                     /energy="-14.8"
                     /TU="NA"
                     /idTUdmin="U751"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1008223..1009632)
                     /gene="yhdI"
                     /locus_tag="BSU_09480"
                     /old_locus_tag="BSU09480"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388829.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09480"
                     /db_xref="EnsemblGenomes-Tr:CAB12787"
                     /db_xref="GOA:O07578"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13015"
                     /db_xref="UniProtKB/Swiss-Prot:O07578"
                     /translation="MDITPFLDKKSKTPLYEQLYTFFKQEISHARITKGTRLPSKRRL
                     SSLLDVSTATIERAYEQLTAEGYVKSKPKIGWFAAEVEPGFPTAPDHFQQSVQPGLHQ
                     KNAPAIDFHQGSVDPTLFPFNAWRKSIVKSLDRYSGSFHTSGDPQGEYELRHMIARFV
                     RLSRGVNCEPGQIIIGAGTTVLLQNLCLSLKPGTKIGFEEPGFHRSRRMFEANHMDVT
                     PICSDAEGVLPDELYRQNPYLMYTTPSHQFPIGTIMTITRRQELLAWAAETNSFIIED
                     DYDGEFRYSGHPIPSLQGLDPNGRVIYLGTFSKSLLPSLRLSFMIVPPELMEPIQNNV
                     QLMKQTVSAHSQLALADFIETGEWQKHINRMRSLYRKKHAVLLEAIRSELGNTVEILG
                     KNSGLHILLRLLFPASEEEAIQAAADHGVTLYPVSPSYIEQTPFTSVLIGYGGLSEED
                     IRLGIQKLKTAWAPLISSY*"
     gene            complement(1008223..1009632)
                     /gene="yhdI"
                     /locus_tag="BSU_09480"
                     /old_locus_tag="BSU09480"
     promotor_-35    1009681..1009684
                     /Source="Nicolas_upshift_promotors"
                     /id="U752"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.52047952047952"
                     /psig="0.996003996003996"
                     /xcortree=459
                     /SigmaFactorBS="tcctttgtagctggcatggtcattttttctgatattggctAT
                     TTggcaaatgccatttATTAGCTATGATCATTGTAAcgaaaggaaaggggattgagaa
                     g"
                     /listShort="yhdJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1009699..1009718
                     /Source="Nicolas_upshift_promotors"
                     /id="U752"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.52047952047952"
                     /psig="0.996003996003996"
                     /xcortree=459
                     /SigmaFactorBS="tcctttgtagctggcatggtcattttttctgatattggctAT
                     TTggcaaatgccatttATTAGCTATGATCATTGTAAcgaaaggaaaggggattgagaa
                     g"
                     /listShort="yhdJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1009701
                     /Source="Nicolas_upshifts"
                     /id="U752"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.52047952047952"
                     /psig="0.996003996003996"
                     /xcortree=459
                     /SigmaFactorBS="tcctttgtagctggcatggtcattttttctgatattggctAT
                     TTggcaaatgccatttATTAGCTATGATCATTGTAAcgaaaggaaaggggattgagaa
                     g"
                     /listShort="yhdJ"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1009703..1009722)
                     /Source="Nicolas_upshift_promotors"
                     /id="U753"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig=1
                     /xcortree=2744
                     /SigmaFactorBS="cttctttcgaggttaattgtttcatatggatcaTCTTCtcaa
                     tcccctttcctTTCGTTACAATGATCATAGCtaataaatggcatttgccaaatagcca
                     a"
                     /listShort="yhdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1009715)
                     /Source="Nicolas_upshifts"
                     /id="U753"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig=1
                     /xcortree=2744
                     /SigmaFactorBS="cttctttcgaggttaattgtttcatatggatcaTCTTCtcaa
                     tcccctttcctTTCGTTACAATGATCATAGCtaataaatggcatttgccaaatagcca
                     a"
                     /listShort="yhdI"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1009738..1009742)
                     /Source="Nicolas_upshift_promotors"
                     /id="U753"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig=1
                     /xcortree=2744
                     /SigmaFactorBS="cttctttcgaggttaattgtttcatatggatcaTCTTCtcaa
                     tcccctttcctTTCGTTACAATGATCATAGCtaataaatggcatttgccaaatagcca
                     a"
                     /listShort="yhdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1009742..1010170
                     /gene="yhdJ"
                     /locus_tag="BSU_09490"
                     /old_locus_tag="BSU09490"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12793527; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_388830.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09490"
                     /db_xref="EnsemblGenomes-Tr:CAB12788"
                     /db_xref="GOA:O07579"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13016"
                     /db_xref="UniProtKB/Swiss-Prot:O07579"
                     /translation="MIHMKQLTSKEEWAESYPIMSELRTELDIETYLQRLEACVQKES
                     YMLFALYENTAIRALCGALPRVSIHKGEHLWIADLVTTAPCRSKGYGKMLLDYASDWA
                     RKAGLGFVSLSSGLQRKDAHRFYTDKMGFTIESYLFRKPV*"
     gene            1009742..1010170
                     /gene="yhdJ"
                     /locus_tag="BSU_09490"
                     /old_locus_tag="BSU09490"
     downshifts      1010149
                     /Source="Nicolas_upshifts"
                     /id="D498"
                     /incds=0
                     /nref=46
                     /ntot=213
                     /MaxReadThrough="1.42962"
                     /MaxDrop="4.77191"
                     /score="24.6412105"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U752"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1010201..1010491)
                     /gene="asiMB"
                     /locus_tag="BSU_09500"
                     /old_locus_tag="BSU09500"
                     /experiment="publication(s) with functional evidences,
                     PMID:10216858"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10216858; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="negative regulator of the activity of sigma-M"
                     /protein_id="NP_388831.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09500"
                     /db_xref="EnsemblGenomes-Tr:CAB12789"
                     /db_xref="GOA:O07580"
                     /db_xref="InterPro:IPR020496"
                     /db_xref="SubtiList:BG13017"
                     /db_xref="UniProtKB/Swiss-Prot:O07580"
                     /translation="MELVRIFKEHNVFGWISVGTAVLSLLLLNLAIISNVTFYSYQML
                     PFAMAAVPFGVVELFIKRGRTGPGLLGVILNLFVIICVYTIVSVDTNLQFGF*"
     gene            complement(1010201..1010491)
                     /gene="asiMB"
                     /locus_tag="BSU_09500"
                     /old_locus_tag="BSU09500"
     downshifts      complement(1010225)
                     /Source="Nicolas_upshifts"
                     /id="D499"
                     /incds=0
                     /nref=44
                     /ntot=229
                     /MaxReadThrough="2.66153"
                     /MaxDrop="4.72865"
                     /score="26.7359231"
                     /energy="-11.1"
                     /TU="NA"
                     /idTUdmin="U754"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1010479..1011555)
                     /gene="asiMA"
                     /locus_tag="BSU_09510"
                     /old_locus_tag="BSU09510"
                     /experiment="publication(s) with functional evidences,
                     PMID:10216858"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10216858; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="negative regulator of the activity of sigma-M"
                     /protein_id="NP_388832.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09510"
                     /db_xref="EnsemblGenomes-Tr:CAB12790"
                     /db_xref="GOA:O07581"
                     /db_xref="InterPro:IPR025672"
                     /db_xref="InterPro:IPR029101"
                     /db_xref="SubtiList:BG13018"
                     /db_xref="UniProtKB/Swiss-Prot:O07581"
                     /translation="MMNEEFKKRFDQYKNGEMSDQEMTAFEEELEKLEVYQELIDSEL
                     EDDNDWDLSISPEKQKAILAYGKRKSYLRISVLAVISTLMILPLCTLGSYLYYGMGGK
                     HSTGNEFMETAAVTVALTMPNVLVDTSGLKSQVKLFGMNTEFPLQKQIGTKTAAVGNE
                     RVEMFYNKVKAPAVNYYDLEVNKTGHYFTHPSNKSEQTTAKAEKTLSTLPEGTVSEVY
                     LSYDRAYPTKDVYNKFKGYDVSFLWNAIETEKNTNKTASTEPLGYPGKDSKFLAALNT
                     KGKSNGDQFINALKFMSKHEKWAQVISKRKDLNVDNRLDYVEKNGVNVYGSVVTGPTK
                     EIQRMLKNKSVKSANVGEVELWNW*"
     gene            complement(1010479..1011555)
                     /gene="asiMA"
                     /locus_tag="BSU_09510"
                     /old_locus_tag="BSU09510"
     CDS             complement(1011545..1012036)
                     /gene="sigM"
                     /locus_tag="BSU_09520"
                     /old_locus_tag="BSU09520"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14651641, 14769884"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14651641, 14769884;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase ECF (extracytoplasmic
                     function)-type sigma factor (sigma(M))"
                     /protein_id="NP_388833.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09520"
                     /db_xref="EnsemblGenomes-Tr:CAB12791"
                     /db_xref="GOA:O07582"
                     /db_xref="InterPro:IPR000838"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR013249"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="InterPro:IPR014296"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13019"
                     /db_xref="UniProtKB/Swiss-Prot:O07582"
                     /translation="MTIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIH
                     SYDHSKVKPWLFQVARNAFIDYVRKHKKEVTISDDLIGSLFQNAVQSPAHQVEIKEVL
                     TGYMSELPDNYREALTLYYLKELNYKEASHIMNISEANFKSVLFRARQRLKALYNRGV
                     NDE*"
     gene            complement(1011545..1012036)
                     /gene="sigM"
                     /locus_tag="BSU_09520"
                     /old_locus_tag="BSU09520"
     S_feature       complement(1012037..1012139)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1030069_1030171_c"
                     /HighExp="Cold, LBGstat, H2O2, G180, Paraq, Oxctl, G135,
                     HPh, dia15, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S330"
     promotor_-10    complement(1012128..1012147)
                     /Source="Nicolas_upshift_promotors"
                     /id="U754"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig=1
                     /xcortree=2579
                     /SigmaFactorBS="ccctctggaaaaaatgttaaacctttctccgcactATCTttt
                     gcggccatttTTGGGTACTATATAGTAATGgtgtttgattaggtataaaaaagccgtt
                     t"
                     /listShort="S330, sigM, yhdL, yhdK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1012139)
                     /Source="Nicolas_upshifts"
                     /id="U754"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig=1
                     /xcortree=2579
                     /SigmaFactorBS="ccctctggaaaaaatgttaaacctttctccgcactATCTttt
                     gcggccatttTTGGGTACTATATAGTAATGgtgtttgattaggtataaaaaagccgtt
                     t"
                     /listShort="S330, sigM, yhdL, yhdK"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1012161..1012164)
                     /Source="Nicolas_upshift_promotors"
                     /id="U754"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.826173826173826"
                     /psig=1
                     /xcortree=2579
                     /SigmaFactorBS="ccctctggaaaaaatgttaaacctttctccgcactATCTttt
                     gcggccatttTTGGGTACTATATAGTAATGgtgtttgattaggtataaaaaagccgtt
                     t"
                     /listShort="S330, sigM, yhdL, yhdK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1012177..1012183
                     /Source="Nicolas_upshift_promotors"
                     /id="U755"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=224
                     /SigmaFactorBS="tatatagtacccaaaaatggccgcaaaagatagtgcggagaa
                     aGGTTTAAcattttttccagagGGGAAAAGATAGTGAAAAAgtgaaggagtggcacaa
                     t"
                     /listShort="yhdN, plsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1012194
                     /Source="Nicolas_upshifts"
                     /id="U755"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=224
                     /SigmaFactorBS="tatatagtacccaaaaatggccgcaaaagatagtgcggagaa
                     aGGTTTAAcattttttccagagGGGAAAAGATAGTGAAAAAgtgaaggagtggcacaa
                     t"
                     /listShort="yhdN, plsC"
                     /GFF_Attribute="listLong"
     promotor_-10    1012198..1012216
                     /Source="Nicolas_upshift_promotors"
                     /id="U755"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=224
                     /SigmaFactorBS="tatatagtacccaaaaatggccgcaaaagatagtgcggagaa
                     aGGTTTAAcattttttccagagGGGAAAAGATAGTGAAAAAgtgaaggagtggcacaa
                     t"
                     /listShort="yhdN, plsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      complement(1012227)
                     /Source="Nicolas_upshifts"
                     /id="D500"
                     /incds=0
                     /nref=2
                     /ntot=13
                     /MaxReadThrough="2.13683"
                     /MaxDrop="4.59517"
                     /score="8.96845329"
                     /energy="-10.2"
                     /TU="NA"
                     /idTUdmin="U757"
                     /TUdmin=1804
                     /isTUend="FALSE"
     CDS             1012233..1013228
                     /gene="akrN"
                     /locus_tag="BSU_09530"
                     /old_locus_tag="BSU09530"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10220166, 15019785, 24330391"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10220166, 15019785,
                     24330391; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase specific for NADPH;
                     protectsagainst methylglyoxal"
                     /protein_id="NP_388834.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09530"
                     /db_xref="EnsemblGenomes-Tr:CAB12792"
                     /db_xref="GOA:P80874"
                     /db_xref="InterPro:IPR018170"
                     /db_xref="InterPro:IPR020471"
                     /db_xref="InterPro:IPR023210"
                     /db_xref="InterPro:IPR036812"
                     /db_xref="PDB:1PZ1"
                     /db_xref="SubtiList:BG13020"
                     /db_xref="UniProtKB/Swiss-Prot:P80874"
                     /translation="MEYTSIADTGIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAAL
                     DQGITLIDTAPAYGFGQSEEIVGKAIKEYGKRDQVILATKTALDWKNNQLFRHANRAR
                     IVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIRAIGVSNFSIE
                     QMDTFRAVAPLHTIQPPYNLFEREMEESVLPYAKDNKITTLLYGSLCRGLLTGKMTEE
                     YTFEGDDLRNHDPKFQKPRFKEYLSAVNQLDKLAKTRYGKSVIHLAVRWILDQPGADI
                     ALWGARKPGQLEALSEITGWTLNSEDQKDINTILENTISDPVGPEFMAPPTREEI*"
     gene            1012233..1013228
                     /gene="akrN"
                     /locus_tag="BSU_09530"
                     /old_locus_tag="BSU09530"
     downshifts      1013207
                     /Source="Nicolas_upshifts"
                     /id="D501"
                     /incds=0
                     /nref=59
                     /ntot=160
                     /MaxReadThrough="6.85446"
                     /MaxDrop="4.90106"
                     /score="10.4379759"
                     /energy="-11.8"
                     /TU="U755"
                     /idTUdmin="U756"
                     /TUdmin="-770"
                     /isTUend="FALSE"
     promotor_-35    1013290..1013293
                     /Source="Nicolas_upshift_promotors"
                     /id="U756"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=2186
                     /SigmaFactorBS="ctttttggcgtttaaacgagagaaatcttaaaaattaGTACc
                     aggtaataaaaaaTATTGTTATAATAGATGACAgaaagaatcattgattacgacaaag
                     g"
                     /listShort="plsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1013308..1013327
                     /Source="Nicolas_upshift_promotors"
                     /id="U756"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=2186
                     /SigmaFactorBS="ctttttggcgtttaaacgagagaaatcttaaaaattaGTACc
                     aggtaataaaaaaTATTGTTATAATAGATGACAgaaagaatcattgattacgacaaag
                     g"
                     /listShort="plsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1013313
                     /Source="Nicolas_upshifts"
                     /id="U756"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.537462537462537"
                     /psig=1
                     /xcortree=2186
                     /SigmaFactorBS="ctttttggcgtttaaacgagagaaatcttaaaaattaGTACc
                     aggtaataaaaaaTATTGTTATAATAGATGACAgaaagaatcattgattacgacaaag
                     g"
                     /listShort="plsC"
                     /GFF_Attribute="listLong"
     CDS             1013363..1013962
                     /gene="plsC"
                     /locus_tag="BSU_09540"
                     /old_locus_tag="BSU09540"
                     /EC_number="2.3.1.51"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 1557036, 17557823"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 1557036,
                     17557823; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-phosphate (1-acyl-G3P)
                     acyltransferase"
                     /protein_id="NP_388835.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09540"
                     /db_xref="EnsemblGenomes-Tr:CAB12793"
                     /db_xref="GOA:O07584"
                     /db_xref="InterPro:IPR002123"
                     /db_xref="InterPro:IPR004552"
                     /db_xref="SubtiList:BG13021"
                     /db_xref="UniProtKB/Swiss-Prot:O07584"
                     /translation="MYKFCANALKVILSLRGGVKVYNKENLPADSGFVIACTHSGWVD
                     VITLGVGILPYQIHYMAKKELFQNKWIGSFLKKIHAFPVDRENPGPSSIKTPIKLLKE
                     GEIVGIFPSGTRTSEDVPLKRGAVTIAQMGKAPLVPAAYQGPSSGKELFKKGKMKLII
                     GEPLHQADFAHLPSKERLAAMTEALNQRIKELENKLDQL*"
     gene            1013363..1013962
                     /gene="plsC"
                     /locus_tag="BSU_09540"
                     /old_locus_tag="BSU09540"
     downshifts      1013977
                     /Source="Nicolas_upshifts"
                     /id="D502"
                     /incds=0
                     /nref=189
                     /ntot=245
                     /MaxReadThrough="6.36101"
                     /MaxDrop="7.07164"
                     /score="-7.3088084"
                     /energy="-6.1"
                     /TU="U755"
                     /idTUdmin="U756"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       1014022..1015976
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1032054_1034008"
                     /HighExp="Cold, C30, S8, T-4.40H, Sw, Fru, S0, S7, HPh,
                     G135"
                     /AntisenseName="yhdP"
                     /AntisenseCor="-0.46228251493795502"
                     /AntisenseRegPval="-14.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S331"
     CDS             complement(1014031..1015365)
                     /gene="yhdP"
                     /locus_tag="BSU_09550"
                     /old_locus_tag="BSU09550"
                     /function="16.1: Circulate"
                     /function="16.12: Sense"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10960106, 25182490;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative magnesium efflux pump"
                     /protein_id="NP_388836.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09550"
                     /db_xref="EnsemblGenomes-Tr:CAB12794"
                     /db_xref="GOA:O07585"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR002550"
                     /db_xref="InterPro:IPR005170"
                     /db_xref="InterPro:IPR016169"
                     /db_xref="InterPro:IPR036318"
                     /db_xref="SubtiList:BG13022"
                     /db_xref="UniProtKB/Swiss-Prot:O07585"
                     /translation="MDIVNLILVAVLIALTAFFVASEFAIIRIRGSRIDQLIAEGNKA
                     AIAVKKVTTHLDEYLSACQLGITLTSIGLGVLGESTIERLLHPLFVQMNVPGSLSHVI
                     SFIFAYAIITFLHVVVGELAPKTVAIQKAEAVSMLFAKPLIWFYRIAFPFIWLLNNSA
                     RLLTKAFGLETVSENELAHSEEELRIILSESYKSGEINQSEFKYVNKIFEFDDRLAKE
                     IMIPRTEIVSLPHDIKISEMMDIIQIEKYTRYPVEEGDKDNIIGVINIKEVLTACISG
                     EVSVDSTISQFVNPIIHVIESAPIQDLLVKMQKERVHMAILSDEYGGTAGLVTVEDII
                     EEIVGEIRDEFDIDEISEIRKIGEGHYILDGKVLIDQVNDLLGIHLENEEVDTIGGWF
                     LTQKYDVEKDDSIIEEGCEFIINEIDGHHVAYIEVKKLQEEELLETANQQEA*"
     gene            complement(1014031..1015365)
                     /gene="yhdP"
                     /locus_tag="BSU_09550"
                     /old_locus_tag="BSU09550"
     downshifts      complement(1014050)
                     /Source="Nicolas_upshifts"
                     /id="D503"
                     /incds=0
                     /nref=284
                     /ntot=315
                     /MaxReadThrough="1.96991"
                     /MaxDrop="7.22379"
                     /score="11.1466394"
                     /energy="-9.1"
                     /TU="NA"
                     /idTUdmin="U757"
                     /TUdmin="-19"
                     /isTUend="TRUE"
     CDS             complement(1015426..1015857)
                     /gene="cueR"
                     /locus_tag="BSU_09560"
                     /old_locus_tag="BSU09560"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14663075, 18048925"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14663075, 18048925;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="indirect copper efflux transcriptional
                     regulator"
                     /protein_id="NP_388837.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09560"
                     /db_xref="EnsemblGenomes-Tr:CAB12795"
                     /db_xref="GOA:O07586"
                     /db_xref="InterPro:IPR000551"
                     /db_xref="InterPro:IPR009061"
                     /db_xref="SubtiList:BG13023"
                     /db_xref="UniProtKB/Swiss-Prot:O07586"
                     /translation="MVGRDIDGAETYRISELAALAGVTKRTVDYYTNLGLLTPARSCS
                     NYRYYDENALKRLIFIVDCKKQRLALSDIKDRLENQFPSSAKLDDEIGNLALEIDHMN
                     QNISGILHRFERLKPEDRDKLKSKLPPEKLAVFQSFMLLLS*"
     gene            complement(1015426..1015857)
                     /gene="cueR"
                     /locus_tag="BSU_09560"
                     /old_locus_tag="BSU09560"
     promotor_-10    complement(1015869..1015888)
                     /Source="Nicolas_upshift_promotors"
                     /id="U757"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.410589410589411"
                     /psig="0.965034965034965"
                     /xcortree=2994
                     /SigmaFactorBS="cttccaattccggtctaaaaaaaacaataaACTTGTGcaaga
                     caccgttcaTATATTAAACTATTCTCATAactataacgtgatggttgggagggatata
                     g"
                     /listShort="cueR, yhdP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1015879)
                     /Source="Nicolas_upshifts"
                     /id="U757"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.410589410589411"
                     /psig="0.965034965034965"
                     /xcortree=2994
                     /SigmaFactorBS="cttccaattccggtctaaaaaaaacaataaACTTGTGcaaga
                     caccgttcaTATATTAAACTATTCTCATAactataacgtgatggttgggagggatata
                     g"
                     /listShort="cueR, yhdP"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1015903..1015909)
                     /Source="Nicolas_upshift_promotors"
                     /id="U757"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.410589410589411"
                     /psig="0.965034965034965"
                     /xcortree=2994
                     /SigmaFactorBS="cttccaattccggtctaaaaaaaacaataaACTTGTGcaaga
                     caccgttcaTATATTAAACTATTCTCATAactataacgtgatggttgggagggatata
                     g"
                     /listShort="cueR, yhdP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_no_box complement(1015905..1016005)
                     /Source="Nicolas_upshift_promotors"
                     /id="U758"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.708291708291708"
                     /psig="0.006993006993007"
                     /xcortree=284
                     /SigmaFactorBS="tccgcatataaaaatttgaaaattctatcttcctatgttact
                     tcaatcagatgatgaattccacaacttccaattccggtctaaaaaaaacaataaactt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     promotor_-35    1015940..1015947
                     /Source="Nicolas_upshift_promotors"
                     /id="U759"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.996003996003996"
                     /xcortree=3066
                     /SigmaFactorBS="ttttttagaccggaattggaagTTGTGGAAttcatcatctga
                     tTGAAGTAACATAGGAAGATAgaattttcaaatttttatatgcggaagggacagatga
                     a"
                     /listShort="yhdR, S332"
                     /listLong="S333, yhdT"
                     /label="promotor_-35"
     upshifts        complement(1015945)
                     /Source="Nicolas_upshifts"
                     /id="U758"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.708291708291708"
                     /psig="0.006993006993007"
                     /xcortree=284
                     /SigmaFactorBS="tccgcatataaaaatttgaaaattctatcttcctatgttact
                     tcaatcagatgatgaattccacaacttccaattccggtctaaaaaaaacaataaactt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    1015961..1015980
                     /Source="Nicolas_upshift_promotors"
                     /id="U759"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.996003996003996"
                     /xcortree=3066
                     /SigmaFactorBS="ttttttagaccggaattggaagTTGTGGAAttcatcatctga
                     tTGAAGTAACATAGGAAGATAgaattttcaaatttttatatgcggaagggacagatga
                     a"
                     /listShort="yhdR, S332"
                     /listLong="S333, yhdT"
                     /label="promotor_-10"
     upshifts        1015978
                     /Source="Nicolas_upshifts"
                     /id="U759"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.616383616383616"
                     /psig="0.996003996003996"
                     /xcortree=3066
                     /SigmaFactorBS="ttttttagaccggaattggaagTTGTGGAAttcatcatctga
                     tTGAAGTAACATAGGAAGATAgaattttcaaatttttatatgcggaagggacagatga
                     a"
                     /listShort="yhdR, S332"
                     /listLong="S333, yhdT"
     CDS             1016014..1017195
                     /gene="yhdR"
                     /locus_tag="BSU_09570"
                     /old_locus_tag="BSU09570"
                     /EC_number="2.6.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12670965, 15103638;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aspartate aminotransferase"
                     /protein_id="NP_388838.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09570"
                     /db_xref="EnsemblGenomes-Tr:CAB12796"
                     /db_xref="GOA:O07587"
                     /db_xref="InterPro:IPR004838"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG13024"
                     /db_xref="UniProtKB/Swiss-Prot:O07587"
                     /translation="MKLAGLSREVEENLNKGSWIRKLFDEGARLKKEFGEDQVFDFSL
                     GNPIVEPPEAFKRALIEEAEKGSHGYIQNQGLLAAREKVAQFLGSRFEADFSAERIVM
                     TVGAGGALNVALKSIVNPGEEVIILAPYFAEYKLYIENYGGKAVSCPLTSRFEIDIEA
                     VRQSITPQTKGLILNTPHNPTGTVLSQKNIDDLGALLKEIEEKSGQTIYVLFDEPYSQ
                     LIYDEELANPFQSYHRVILASSFSKDLGIAGERLGYIGLDSRMPDADLLINAFVYCNR
                     TLGFVNAPVMMQRAVARMDDLRVDASAYKERRDLMVDILKEAGFEFEMPKGGFFVFPK
                     SPIEDEVAFCVHAAQKYKLLIVPSSGFGMSGHFRLSFSVPIEQIKNSRDIFISLYKDF
                     A*"
     gene            1016014..1017195
                     /gene="yhdR"
                     /locus_tag="BSU_09570"
                     /old_locus_tag="BSU09570"
     downshifts      1017180
                     /Source="Nicolas_upshifts"
                     /id="D504"
                     /incds=0
                     /nref=12
                     /ntot=180
                     /MaxReadThrough="2.81766"
                     /MaxDrop="3.37889"
                     /score="-5.8634451"
                     /energy="-9.1"
                     /TU="U759"
                     /idTUdmin="U759"
                     /TUdmin="-163"
                     /isTUend="FALSE"
     S_feature       1017225..1017363
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1035257_1035395"
                     /HighExp="Etha, S1, BMM, S2, Cold, MG 45, MG 25, C90,
                     T-5.40H, MG 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S332"
     misc_feature    1017359..1017378
                     /Source="Nicolas_upshift_promotors"
                     /id="U760"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.771228771228771"
                     /psig="0.999000999001"
                     /xcortree=460
                     /SigmaFactorBS="aaggctttcttcatgataaaagtctaaaaattaaaaatcatt
                     tttggaatgagtTGTGTTACAATAAAATATACaatttataatcaaactttgacttttg
                     g"
                     /listShort="S333, yhdT"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1017365..1017521
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1035397_1035553"
                     /HighExp="M9-stat, B60, T4.0H, T3.0H, LoTm, S5, T5.0H, S4,
                     T2.30H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.996"
                     /label="S333"
     upshifts        1017365
                     /Source="Nicolas_upshifts"
                     /id="U760"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.771228771228771"
                     /psig="0.999000999001"
                     /xcortree=460
                     /SigmaFactorBS="aaggctttcttcatgataaaagtctaaaaattaaaaatcatt
                     tttggaatgagtTGTGTTACAATAAAATATACaatttataatcaaactttgacttttg
                     g"
                     /listShort="S333, yhdT"
                     /GFF_Attribute="listLong"
     CDS             1017522..1018907
                     /gene="yhdT"
                     /locus_tag="BSU_09590"
                     /old_locus_tag="BSU09590"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type m: membrane
                     component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388840.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09590"
                     /db_xref="EnsemblGenomes-Tr:CAB12798"
                     /db_xref="GOA:O07589"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR002550"
                     /db_xref="InterPro:IPR005170"
                     /db_xref="InterPro:IPR016169"
                     /db_xref="InterPro:IPR036318"
                     /db_xref="SubtiList:BG13026"
                     /db_xref="UniProtKB/Swiss-Prot:O07589"
                     /translation="MDDIDSLILIGVLIALTAFFVASEFAIVRVRRSRIDQLITEGNK
                     RAILARRVITDLDEYLSASQLGITLTSIGLGVLGEPAFERLLHPLFEPLGLPDSVSHA
                     VSFAVAYGLITFLHVVVGELAPKTVAIQKAEQLTLLIAGPLRLFYLLLFPFIWILNGS
                     ARLLCGMFGLKPASEHDGSHSEEELRMLLSESLKNGEINPSEYKYVNKIFEFDNRIAK
                     EIMIPRKEMAAVSTEMTMAEMLEVMLKEKYTRWPVTDGDKDSVLGLVNTKHLFSDLLF
                     MTEEERMKMTIHPYVRPVIEVIETIPVHDLLIKMQRERIHMAILSDEYGGTSGLVTTE
                     DILEEIVGEIRDEFDEDEQPLIQKLGDGHYVMDGKVRIDQVNSLLGASIQEDVDTIGG
                     LILKENIDIEAGESIRIGSYTIKVLKMDGRLIKQIDIKEEAGNTTGITAHHKLPLPEP
                     VMLNSATLSEK*"
     gene            1017522..1018907
                     /gene="yhdT"
                     /locus_tag="BSU_09590"
                     /old_locus_tag="BSU09590"
     downshifts      1018797
                     /Source="Nicolas_upshifts"
                     /id="D505"
                     /incds=1
                     /nref=120
                     /ntot=240
                     /MaxReadThrough="5.11037"
                     /MaxDrop="3.79021"
                     /score="19.6985636"
                     /energy="-10.5"
                     /TU="U760"
                     /idTUdmin="U760"
                     /TUdmin="-86"
                     /isTUend="FALSE"
     downshifts      1018883
                     /Source="Nicolas_upshifts"
                     /id="D506"
                     /incds=0
                     /nref=129
                     /ntot=245
                     /MaxReadThrough="1.68999"
                     /MaxDrop="6.12682"
                     /score="19.6985636"
                     /energy="-10.5"
                     /TU="NA"
                     /idTUdmin="U760"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1018921..1019277)
                     /gene="crcBA"
                     /locus_tag="BSU_09600"
                     /old_locus_tag="BSU09600"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8844142, 12904550, 15849754,
                     16850406, 17196979, 22194412, 27824896; Product type t:
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux channel component A"
                     /protein_id="NP_388841.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09600"
                     /db_xref="EnsemblGenomes-Tr:CAB12799"
                     /db_xref="GOA:O07590"
                     /db_xref="InterPro:IPR003691"
                     /db_xref="SubtiList:BG13027"
                     /db_xref="UniProtKB/Swiss-Prot:O07590"
                     /translation="MTLAGIFIGGGLGAMLRFWLGNVITAKTKGLSLPIGILTVNILG
                     ALGLGIFTGLHVANASVSLIIGTGFFGAFTTFSTFSVETIQLLMAKRVKESILYIVLT
                     LCGSLFAFWCGWTITI*"
     gene            complement(1018921..1019277)
                     /gene="crcBA"
                     /locus_tag="BSU_09600"
                     /old_locus_tag="BSU09600"
     CDS             complement(1019274..1019669)
                     /gene="crcBB"
                     /locus_tag="BSU_09610"
                     /old_locus_tag="BSU09610"
                     /function="16.1: Circulate"
                     /function="16.4: Excrete"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8844142, 12904550, 15849754,
                     16850406, 22194412, 27824896; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="subunit of fluoride efflux transporter"
                     /protein_id="NP_388842.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09610"
                     /db_xref="EnsemblGenomes-Tr:CAB12800"
                     /db_xref="GOA:O07591"
                     /db_xref="InterPro:IPR003691"
                     /db_xref="SubtiList:BG13028"
                     /db_xref="UniProtKB/Swiss-Prot:O07591"
                     /translation="MKIYSAVFIGGALGACLRYGLNLWIHTGQFPAATWLENAAGSLL
                     LGILTGFFMIGAKRPLLSAFLGTGFCGGFTTMSTFSKETVMLLQGQPSLALLYVAASL
                     ISGIIFALIGVFVGRRIAGIQQRKGLQEK*"
     gene            complement(1019274..1019669)
                     /gene="crcBB"
                     /locus_tag="BSU_09610"
                     /old_locus_tag="BSU09610"
     CDS             complement(1019656..1020387)
                     /gene="yhdW"
                     /locus_tag="BSU_09620"
                     /old_locus_tag="BSU09620"
                     /EC_number="3.1.4.46"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8012593; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycerophosphodiester
                     phosphodiesterase"
                     /protein_id="NP_388843.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09620"
                     /db_xref="EnsemblGenomes-Tr:CAB12801"
                     /db_xref="GOA:O07592"
                     /db_xref="InterPro:IPR004129"
                     /db_xref="InterPro:IPR017946"
                     /db_xref="InterPro:IPR030395"
                     /db_xref="SubtiList:BG13029"
                     /db_xref="UniProtKB/Swiss-Prot:O07592"
                     /translation="MYIIAHRGASGYAPENTIAAFDLAVKMNADMIELDVQLTKDRQI
                     VVIHDDRVDRTTNGSGFVKDFTLEELQKLDAGSWYGPAFQGERIPTLEAVLKRYHKKI
                     GLLIELKGHPSQVGIEEEVGQLLGQFSFSINNIVQSFQFRSVQRFRELYPSIPTAVIT
                     RPNFGMLSRNQMKAFRSFANYVNIKHTRLNRLMIGSINKNGLNIFAWTVNNQKTAAKL
                     QAMGVDGIVTDYPDFIIKDGKHENI*"
     gene            complement(1019656..1020387)
                     /gene="yhdW"
                     /locus_tag="BSU_09620"
                     /old_locus_tag="BSU09620"
     misc_feature    complement(1020412..1020431)
                     /Source="Nicolas_upshift_promotors"
                     /id="U761"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.683316683316683"
                     /psig="0.986013986013986"
                     /xcortree=3010
                     /SigmaFactorBS="gcccggaccattccgatatggcagaaaaaattcaccagtttg
                     tatcgcggtgcatatatggaTTTGATACAATAACAGAAATgcccatacgaggagctga
                     c"
                     /listShort="yhdW, yhdV, crcBA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1020433)
                     /Source="Nicolas_upshifts"
                     /id="U761"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.683316683316683"
                     /psig="0.986013986013986"
                     /xcortree=3010
                     /SigmaFactorBS="gcccggaccattccgatatggcagaaaaaattcaccagtttg
                     tatcgcggtgcatatatggaTTTGATACAATAACAGAAATgcccatacgaggagctga
                     c"
                     /listShort="yhdW, yhdV, crcBA"
                     /GFF_Attribute="listLong"
     promotor_-35    1020480..1020488
                     /Source="Nicolas_upshift_promotors"
                     /id="U762"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.563436563436563"
                     /psig="0.563436563436563"
                     /xcortree=896
                     /SigmaFactorBS="atatgcaccgcgatacaaactggtgaattttttctgccatat
                     cGGAATGGTCcgggctgaggaatGCGTATAACTAAAAAAagacactcagcgtatcaga
                     a"
                     /listShort="S334, yhdX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1020497
                     /Source="Nicolas_upshifts"
                     /id="U762"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.563436563436563"
                     /psig="0.563436563436563"
                     /xcortree=896
                     /SigmaFactorBS="atatgcaccgcgatacaaactggtgaattttttctgccatat
                     cGGAATGGTCcgggctgaggaatGCGTATAACTAAAAAAagacactcagcgtatcaga
                     a"
                     /listShort="S334, yhdX"
                     /GFF_Attribute="listLong"
     promotor_-10    1020502..1020517
                     /Source="Nicolas_upshift_promotors"
                     /id="U762"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.563436563436563"
                     /psig="0.563436563436563"
                     /xcortree=896
                     /SigmaFactorBS="atatgcaccgcgatacaaactggtgaattttttctgccatat
                     cGGAATGGTCcgggctgaggaatGCGTATAACTAAAAAAagacactcagcgtatcaga
                     a"
                     /listShort="S334, yhdX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1020511..1020584
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1038543_1038616"
                     /HighExp="S5, S4, S6, S7, S8, S3, B60, Pyr, B36, BT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig="0.563"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S334"
     promotor_-35    1020571..1020572
                     /Source="Nicolas_upshift_promotors"
                     /id="U763"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig="0.998001998001998"
                     /xcortree=461
                     /SigmaFactorBS="agcgtatcagaacacatttcgtcagaaaattaggtctttcga
                     catGTtcacaacaaaatatgATCCTTTATAATAGCAAAAAaggaggcgagatcatggg
                     a"
                     /listShort="yhdX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1020586
                     /Source="Nicolas_upshifts"
                     /id="U763"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig="0.998001998001998"
                     /xcortree=461
                     /SigmaFactorBS="agcgtatcagaacacatttcgtcagaaaattaggtctttcga
                     catGTtcacaacaaaatatgATCCTTTATAATAGCAAAAAaggaggcgagatcatggg
                     a"
                     /listShort="yhdX"
                     /GFF_Attribute="listLong"
     promotor_-10    1020588..1020607
                     /Source="Nicolas_upshift_promotors"
                     /id="U763"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig="0.998001998001998"
                     /xcortree=461
                     /SigmaFactorBS="agcgtatcagaacacatttcgtcagaaaattaggtctttcga
                     catGTtcacaacaaaatatgATCCTTTATAATAGCAAAAAaggaggcgagatcatggg
                     a"
                     /listShort="yhdX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1020621..1020728
                     /gene="yhdX"
                     /locus_tag="BSU_09630"
                     /old_locus_tag="BSU09630"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388844.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09630"
                     /db_xref="EnsemblGenomes-Tr:CAB12802"
                     /db_xref="InterPro:IPR035384"
                     /db_xref="SubtiList:BG13030"
                     /db_xref="UniProtKB/Swiss-Prot:O07593"
                     /translation="MGKGRIRVEERIKAETDAEMQKATLLDQTQTKKGK*"
     gene            1020621..1020728
                     /gene="yhdX"
                     /locus_tag="BSU_09630"
                     /old_locus_tag="BSU09630"
     S_feature       1020729..1020782
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1038761_1038814"
                     /HighExp="Sw, BC, LPhT, HiOs, S4, HiTm, S5, B36, S7, S6"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S335"
     downshifts      1020753
                     /Source="Nicolas_upshifts"
                     /id="D507"
                     /incds=0
                     /nref=177
                     /ntot=225
                     /MaxReadThrough="0.97838"
                     /MaxDrop="7.47175"
                     /score="21.9742676"
                     /energy="-14.5"
                     /TU="NA"
                     /idTUdmin="U762"
                     /TUdmin=0
                     /isTUend="TRUE"
     misc_feature    1020833..1020852
                     /Source="Nicolas_upshift_promotors"
                     /id="U764"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.381618381618382"
                     /psig="0.931068931068931"
                     /xcortree=1800
                     /SigmaFactorBS="tttcgccggggttttgtgctgcataagacatttaaatgaaca
                     tccttacgaataTTTTAGTATAATAAACAATTgattgggatagaggggagacagtcat
                     g"
                     /listShort="yhdY, yhdZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1020839
                     /Source="Nicolas_upshifts"
                     /id="U764"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.381618381618382"
                     /psig="0.931068931068931"
                     /xcortree=1800
                     /SigmaFactorBS="tttcgccggggttttgtgctgcataagacatttaaatgaaca
                     tccttacgaataTTTTAGTATAATAAACAATTgattgggatagaggggagacagtcat
                     g"
                     /listShort="yhdY, yhdZ"
                     /GFF_Attribute="listLong"
     CDS             1020877..1021992
                     /gene="mscY"
                     /locus_tag="BSU_09640"
                     /old_locus_tag="BSU09640"
                     /function="16.8: Protect"
                     /function="16.12: Sense"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12077558, 15849754, 16850406, 17665170, 18310427,
                     19252899"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12077558, 15849754,
                     16850406, 17665170, 18310427, 19252899; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="small conductance mechano-sensitive channel"
                     /protein_id="NP_388845.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09640"
                     /db_xref="EnsemblGenomes-Tr:CAB12803"
                     /db_xref="GOA:O07594"
                     /db_xref="InterPro:IPR006685"
                     /db_xref="InterPro:IPR006686"
                     /db_xref="InterPro:IPR010920"
                     /db_xref="InterPro:IPR011014"
                     /db_xref="InterPro:IPR011066"
                     /db_xref="SubtiList:BG13031"
                     /db_xref="UniProtKB/Swiss-Prot:O07594"
                     /translation="MPDYLQQYFTLDNIIQIGISLAILLVFLILRKLFTRYFFNLLFN
                     LTNRPKTEIFKQVVLAFDKPARWFFVALGLFLAIRYSPFLDEQMPVISKIYRSLIVAL
                     LCWGLCNLTATSSFIFHKVNQRFELDMDDILAPFLSKLLRFVIIALSVSVIAQEFNYD
                     VNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITEKPFTIGDWVETSTVTGSVEDITF
                     RSTRFRTAQGALVTVPNSTLSMEAITNWTRMTKRQITFSIHVSYATPIENLERSIHSL
                     RTMLLEHEGVDNEIIMVNFDTFADSYYNLFFNFYTKTTVWAENLNIREDINYKIIEIL
                     GAEGVQFAYPGQMVVVKQKHESDQFQVNLNKEEKERA*"
     gene            1020877..1021992
                     /gene="mscY"
                     /locus_tag="BSU_09640"
                     /old_locus_tag="BSU09640"
     downshifts      1021972
                     /Source="Nicolas_upshifts"
                     /id="D508"
                     /incds=0
                     /nref=5
                     /ntot=141
                     /MaxReadThrough="3.45709"
                     /MaxDrop="3.93891"
                     /score="2.31392404"
                     /energy="-12.3"
                     /TU="U764"
                     /idTUdmin="U764"
                     /TUdmin="-783"
                     /isTUend="FALSE"
     misc_feature    1022029..1022048
                     /Source="Nicolas_upshift_promotors"
                     /id="U765"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig=1
                     /xcortree=3140
                     /SigmaFactorBS="aaagaggaaaaggaacgggcttaaaagagagacttcgtctga
                     cagaggcggagtctttttCATGGTAAAATAAGAGAAAAaggcggtgttgagttggaaa
                     c"
                     /listShort="yhdZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1022029
                     /Source="Nicolas_upshifts"
                     /id="U765"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.937062937062937"
                     /psig=1
                     /xcortree=3140
                     /SigmaFactorBS="aaagaggaaaaggaacgggcttaaaagagagacttcgtctga
                     cagaggcggagtctttttCATGGTAAAATAAGAGAAAAaggcggtgttgagttggaaa
                     c"
                     /listShort="yhdZ"
                     /GFF_Attribute="listLong"
     CDS             1022062..1022805
                     /gene="srtN"
                     /locus_tag="BSU_09650"
                     /old_locus_tag="BSU09650"
                     /EC_number="3.5.1.-"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:16768447, 19136592, 26708127, 27987242"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16768447, 19136592,
                     26708127, 27987242; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="sirtuin NAD-dependent deacetylase"
                     /protein_id="NP_388846.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09650"
                     /db_xref="EnsemblGenomes-Tr:CAB12804"
                     /db_xref="GOA:O07595"
                     /db_xref="InterPro:IPR003000"
                     /db_xref="InterPro:IPR026590"
                     /db_xref="InterPro:IPR028628"
                     /db_xref="InterPro:IPR029035"
                     /db_xref="SubtiList:BG13032"
                     /db_xref="UniProtKB/Swiss-Prot:O07595"
                     /translation="METFKSILHEAQRIVVLTGAGMSTESGIPDFRSAGGIWTEDASR
                     MEAMSLDYFLSYPRLFWPKFKELFQMKMSGSFEPNEGHLLLAELEKQGKQVDIFTQNI
                     DGLHKKAGSRHVYELHGSIQTAACPACGARYDLPHLLEREVPECTAAGNNGDICGTVL
                     KTDVVLFGDAVMHFDTLYEKLDQADLLLVIGTSLEVAPARFVPEDASLIPGMKKVIIN
                     LEPTYCDSLFDMVIHQKIGEFARSLGMKK*"
     gene            1022062..1022805
                     /gene="srtN"
                     /locus_tag="BSU_09650"
                     /old_locus_tag="BSU09650"
     downshifts      1022777
                     /Source="Nicolas_upshifts"
                     /id="D509"
                     /incds=0
                     /nref=3
                     /ntot=82
                     /MaxReadThrough="1.93149"
                     /MaxDrop="2.85561"
                     /score="9.76884826"
                     /energy="-9.2"
                     /TU="NA"
                     /idTUdmin="U765"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1022829..1023677)
                     /gene="yheN"
                     /locus_tag="BSU_09660"
                     /old_locus_tag="BSU09660"
                     /EC_number="3.5.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative polysaccharide deacetylase"
                     /protein_id="NP_388847.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09660"
                     /db_xref="EnsemblGenomes-Tr:CAB12805"
                     /db_xref="GOA:O07596"
                     /db_xref="InterPro:IPR002509"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="SubtiList:BG13046"
                     /db_xref="UniProtKB/Swiss-Prot:O07596"
                     /translation="MRQTRGEASPSAVSLAFKFASLAVLCVLLLLMVILGYSNSSTKA
                     KEVTVTTNGQLRDEKESLKLKNDSPDLLIKHLQTKQNMGDKTVYLTFDDGPSAVTTRL
                     LDVLKSADVKATFFMLSPRMNEFKQAVKRAEKEGHALGLHGVTHNNRLFYQTPTSPLK
                     EMQEARDTLQDITGYKTDLVRTPYGSKPSLTASQIRNLEKDGFVYWDWTIDSMDWKYR
                     NSQYVTAVLQQLENMEHSSSSRPNVILMHDLPATVNALPVLINKLKEKGYSFGVLEDT
                     MVPVHE*"
     gene            complement(1022829..1023677)
                     /gene="yheN"
                     /locus_tag="BSU_09660"
                     /old_locus_tag="BSU09660"
     downshifts      complement(1022853)
                     /Source="Nicolas_upshifts"
                     /id="D510"
                     /incds=0
                     /nref=126
                     /ntot=242
                     /MaxReadThrough="2.03966"
                     /MaxDrop="4.72968"
                     /score="-7.82934513"
                     /energy="-9.2"
                     /TU="NA"
                     /idTUdmin="U767"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1023673..1023678
                     /Source="Nicolas_upshift_promotors"
                     /id="U766"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1125
                     /SigmaFactorBS="cgaaactgcagaaggagaagcctctcctctcgtttgtCGCAT
                     AacaatctctccattgGCATAAAATCTCTACATAAtgctgtacagcaggcagcttatg
                     a"
                     /listShort="S337, S338, dat"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(1023678..1023777)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1041710_1041809_c"
                     /HighExp="Cold, T3.0H, T2.30H, T3.30H, T4.0H, T2.0H, HPh,
                     C30, T1.30H, T5.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S336"
     promotor_-10    1023694..1023712
                     /Source="Nicolas_upshift_promotors"
                     /id="U766"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1125
                     /SigmaFactorBS="cgaaactgcagaaggagaagcctctcctctcgtttgtCGCAT
                     AacaatctctccattgGCATAAAATCTCTACATAAtgctgtacagcaggcagcttatg
                     a"
                     /listShort="S337, S338, dat"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1023696
                     /Source="Nicolas_upshifts"
                     /id="U766"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1125
                     /SigmaFactorBS="cgaaactgcagaaggagaagcctctcctctcgtttgtCGCAT
                     AacaatctctccattgGCATAAAATCTCTACATAAtgctgtacagcaggcagcttatg
                     a"
                     /listShort="S337, S338, dat"
                     /GFF_Attribute="listLong"
     S_feature       1023701..1023896
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1041733_1041928"
                     /HighExp="S5, S4, S6, S3, S7, S8, LoTm, B36, T5.0H, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S337"
     promotor_-10    complement(1023766..1023785)
                     /Source="Nicolas_upshift_promotors"
                     /id="U767"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig=1
                     /xcortree=2149
                     /SigmaFactorBS="ttttttccttaaaatctgacatttcgacaaattttctATGTg
                     ctttccagttttaTTCCTGTATACTTGACTGGTaatacataggttgtaaacataaggc
                     a"
                     /listShort="S336, yheN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1023780)
                     /Source="Nicolas_upshifts"
                     /id="U767"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig=1
                     /xcortree=2149
                     /SigmaFactorBS="ttttttccttaaaatctgacatttcgacaaattttctATGTg
                     ctttccagttttaTTCCTGTATACTTGACTGGTaatacataggttgtaaacataaggc
                     a"
                     /listShort="S336, yheN"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1023800..1023803)
                     /Source="Nicolas_upshift_promotors"
                     /id="U767"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.57042957042957"
                     /psig=1
                     /xcortree=2149
                     /SigmaFactorBS="ttttttccttaaaatctgacatttcgacaaattttctATGTg
                     ctttccagttttaTTCCTGTATACTTGACTGGTaatacataggttgtaaacataaggc
                     a"
                     /listShort="S336, yheN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    1023895..1023914
                     /Source="Nicolas_upshift_promotors"
                     /id="U768"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=2940
                     /SigmaFactorBS="aaataaactcctttccgctatagatctcttgatctttctgtt
                     tttcagcttgtccaaTATGGTAGAATTAGTGATAAtgacagcttgaatgacatcaggg
                     a"
                     /listShort="S338, dat"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1023898..1023961
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1041930_1041993"
                     /HighExp="BC, T2.30H, T3.0H, T3.30H, T4.0H, T5.0H, T2.0H,
                     T1.30H, S4, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S338"
     upshifts        1023898
                     /Source="Nicolas_upshifts"
                     /id="U768"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.99100899100899"
                     /psig=1
                     /xcortree=2940
                     /SigmaFactorBS="aaataaactcctttccgctatagatctcttgatctttctgtt
                     tttcagcttgtccaaTATGGTAGAATTAGTGATAAtgacagcttgaatgacatcaggg
                     a"
                     /listShort="S338, dat"
                     /GFF_Attribute="listLong"
     CDS             1023962..1024810
                     /gene="dat"
                     /locus_tag="BSU_09670"
                     /old_locus_tag="BSU09670"
                     /EC_number="2.6.1.21"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9003455, 17005988; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine aminotransferase"
                     /protein_id="NP_388848.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09670"
                     /db_xref="EnsemblGenomes-Tr:CAB12806"
                     /db_xref="GOA:O07597"
                     /db_xref="InterPro:IPR001544"
                     /db_xref="InterPro:IPR005784"
                     /db_xref="InterPro:IPR018300"
                     /db_xref="InterPro:IPR036038"
                     /db_xref="SubtiList:BG13045"
                     /db_xref="UniProtKB/Swiss-Prot:O07597"
                     /translation="MKVLVNGRLIGRSEASIDLEDRGYQFGDGIYEVIRVYKGVLFGL
                     REHAERFFRSAAEIGISLPFSIEDLEWDLQKLVQENAVSEGAVYIQTTRGVAPRKHQY
                     EAGLEPQTTAYTFTVKKPEQEQAYGVAAITDEDLRWLRCDIKSLNLLYNVMTKQRAYE
                     AGAFEAILLRDGVVTEGTSSNVYAVINGTVRTHPANRLILNGITRMNILGLIEKNGIK
                     LDETPVSEEELKQAEEIFISSTTAEIIPVVTLDGQSIGSGKPGPVTKQLQAAFQESIQ
                     QAASIS*"
     gene            1023962..1024810
                     /gene="dat"
                     /locus_tag="BSU_09670"
                     /old_locus_tag="BSU09670"
     downshifts      1024801
                     /Source="Nicolas_upshifts"
                     /id="D511"
                     /incds=0
                     /nref=232
                     /ntot=261
                     /MaxReadThrough="2.27201"
                     /MaxDrop="6.88888"
                     /score="21.6239924"
                     /energy="-11.5"
                     /TU="U768"
                     /idTUdmin="U766"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1024853..1026214)
                     /gene="nhaC"
                     /locus_tag="BSU_09680"
                     /old_locus_tag="BSU09680"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10735849, 11274110, 15849754, 16850406, 17937670"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10735849, 11274110,
                     15849754, 16850406, 17937670; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="NP_388849.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09680"
                     /db_xref="EnsemblGenomes-Tr:CAB12807"
                     /db_xref="GOA:O07553"
                     /db_xref="InterPro:IPR004770"
                     /db_xref="InterPro:IPR018461"
                     /db_xref="SubtiList:BG13044"
                     /db_xref="UniProtKB/Swiss-Prot:O07553"
                     /translation="MDSQKKLTFPLAVGLFIFMLCIIISCLFLLHVEPHIPLFLSVVM
                     LSAAALWFGFPWKSIEKGIVDGIKNGVQPIIVLALIGILIGAWMYSGAIPTMTVYALS
                     FIEPSHLLLTALFSCMIISTLVGSSLTTVSTIGVALIGVASAAGVPLEWTAGAVICGA
                     CFGDKMSPMSDTTNFAAGIGEIPIFEHIRHMMGTTIPALLITVVLFYFLGSSVSADAA
                     STDNIQQVITGIKDAANVTPWALLSPLLVVLLAMKRVSVIPVLTAGIISSGILTAIFV
                     PYSSLQAFMTALQNGTTFETDNEAAAKIINRGGLQSMMGSVSLIMIAFALGGLMEKIG
                     LISALLEGVMKGIRSKGRLVAATVCSSIGVNLATGEQYLSILIPGQSFKSLYDKRNIQ
                     RKFLTRSLEDGGTLINPLIPWGVSGAFMASALGVPVIDYIPFTFFLYISPMISILIGF
                     VKK*"
     gene            complement(1024853..1026214)
                     /gene="nhaC"
                     /locus_tag="BSU_09680"
                     /old_locus_tag="BSU09680"
     downshifts      complement(1024877)
                     /Source="Nicolas_upshifts"
                     /id="D512"
                     /incds=0
                     /nref=7
                     /ntot=77
                     /MaxReadThrough="0.50034"
                     /MaxDrop="3.60175"
                     /score="1.04025421"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U769"
                     /TUdmin=22
                     /isTUend="TRUE"
     S_feature       complement(1026215..1026285)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1044247_1044317_c"
                     /HighExp="B60, G135, Etha, LBGexp, G150, Diami, Paraq,
                     G180, H2O2, Gly"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="0.96, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S339"
     misc_feature    complement(1026258..1026277)
                     /Source="Nicolas_upshift_promotors"
                     /id="U769"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig="0.96003996003996"
                     /xcortree=2470
                     /SigmaFactorBS="agtgagcacgccctgtgctcacttcttttatattcataattg
                     tgaaaaaacatagattttcgttttttTCTGTTATAATGCTTTCGTGcccaaaagcaca
                     a"
                     /listShort="S339, nhaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1026285)
                     /Source="Nicolas_upshifts"
                     /id="U769"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.926073926073926"
                     /psig="0.96003996003996"
                     /xcortree=2470
                     /SigmaFactorBS="agtgagcacgccctgtgctcacttcttttatattcataattg
                     tgaaaaaacatagattttcgttttttTCTGTTATAATGCTTTCGTGcccaaaagcaca
                     a"
                     /listShort="S339, nhaC"
                     /GFF_Attribute="listLong"
     CDS             complement(1026341..1026841)
                     /gene="nhaX"
                     /locus_tag="BSU_09690"
                     /old_locus_tag="BSU09690"
                     /function="16.12: Sense"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11988534, 16159758,
                     27464829; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein, UspA family"
                     /protein_id="NP_388850.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09690"
                     /db_xref="EnsemblGenomes-Tr:CAB12808"
                     /db_xref="GOA:O07552"
                     /db_xref="InterPro:IPR006015"
                     /db_xref="InterPro:IPR006016"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="SubtiList:BG13043"
                     /db_xref="UniProtKB/Swiss-Prot:O07552"
                     /translation="MFHADRIIVAFDGSENSKKALLTAIDLAKTVNAAITVAHSHDMK
                     DNQTVIDPPRPAAEASYISGGMTSVPDPLISDVTSPEPMIYEDRTEEVIAEARMMLNE
                     QQADGDIDILEGDPAESIIEHANRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDI
                     PVLIVK*"
     gene            complement(1026341..1026841)
                     /gene="nhaX"
                     /locus_tag="BSU_09690"
                     /old_locus_tag="BSU09690"
     downshifts      complement(1026373)
                     /Source="Nicolas_upshifts"
                     /id="D513"
                     /incds=0
                     /nref=10
                     /ntot=63
                     /MaxReadThrough="4.74071"
                     /MaxDrop="5.69273"
                     /score="4.44189378"
                     /energy="-12.2"
                     /TU="U770"
                     /idTUdmin="U770"
                     /TUdmin="-1320"
                     /isTUend="FALSE"
     promotor_-10    complement(1026863..1026881)
                     /Source="Nicolas_upshift_promotors"
                     /id="U770"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=208
                     /SigmaFactorBS="aaacaaaaccttttattgtcaatcattacttgaataggaaaA
                     GGTTAAttgtgctcaaattcGGGTAGTAGTGTTGTAAGAcgctttgaaagggtgagaa
                     g"
                     /listShort="nhaX, S339, nhaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1026883)
                     /Source="Nicolas_upshifts"
                     /id="U770"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=208
                     /SigmaFactorBS="aaacaaaaccttttattgtcaatcattacttgaataggaaaA
                     GGTTAAttgtgctcaaattcGGGTAGTAGTGTTGTAAGAcgctttgaaagggtgagaa
                     g"
                     /listShort="nhaX, S339, nhaC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1026896..1026902)
                     /Source="Nicolas_upshift_promotors"
                     /id="U770"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=208
                     /SigmaFactorBS="aaacaaaaccttttattgtcaatcattacttgaataggaaaA
                     GGTTAAttgtgctcaaattcGGGTAGTAGTGTTGTAAGAcgctttgaaagggtgagaa
                     g"
                     /listShort="nhaX, S339, nhaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1026920..1026927
                     /Source="Nicolas_upshift_promotors"
                     /id="U771"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig=1
                     /xcortree=416
                     /SigmaFactorBS="ctacccgaatttgagcacaattaaccttttcctattcaagta
                     atGATTGACAataaaaggttttgtTTATATGATGATAAAAAGATgaaatcagaatgga
                     a"
                     /listShort="S340, yheJ, S341, yheI, yheH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1026935..1027004
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1044967_1045036"
                     /HighExp="C90, M9-stat, BC, T1.30H, T3.30H, Sw, T5.0H, GM
                     15, T3.0H, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S340"
     upshifts        1026936
                     /Source="Nicolas_upshifts"
                     /id="U771"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig=1
                     /xcortree=416
                     /SigmaFactorBS="ctacccgaatttgagcacaattaaccttttcctattcaagta
                     atGATTGACAataaaaggttttgtTTATATGATGATAAAAAGATgaaatcagaatgga
                     a"
                     /listShort="S340, yheJ, S341, yheI, yheH"
                     /GFF_Attribute="listLong"
     promotor_-10    1026942..1026961
                     /Source="Nicolas_upshift_promotors"
                     /id="U771"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.918081918081918"
                     /psig=1
                     /xcortree=416
                     /SigmaFactorBS="ctacccgaatttgagcacaattaaccttttcctattcaagta
                     atGATTGACAataaaaggttttgtTTATATGATGATAAAAAGATgaaatcagaatgga
                     a"
                     /listShort="S340, yheJ, S341, yheI, yheH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1027005..1027166
                     /gene="bmrB"
                     /locus_tag="BSU_09700"
                     /old_locus_tag="BSU09700"
                     /experiment="publication(s) with functional evidences,
                     PMID:25217586"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 25217586; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator leader peptide"
                     /protein_id="NP_388851.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09700"
                     /db_xref="EnsemblGenomes-Tr:CAB12809"
                     /db_xref="SubtiList:BG13042"
                     /db_xref="UniProtKB/Swiss-Prot:O07551"
                     /translation="MFIKQFHIGAANLLFCFRERFFRSDRALKSAVRNISVKKGMELT
                     LHAFFIYKI*"
     gene            1027005..1027166
                     /gene="bmrB"
                     /locus_tag="BSU_09700"
                     /old_locus_tag="BSU09700"
     downshifts      1027096
                     /Source="Nicolas_upshifts"
                     /id="D514"
                     /incds=1
                     /nref=29
                     /ntot=180
                     /MaxReadThrough="5.31538"
                     /MaxDrop="4.59672"
                     /score="25.6910195"
                     /energy="-14.4"
                     /TU="U771"
                     /idTUdmin="U768"
                     /TUdmin=2273
                     /isTUend="FALSE"
     S_feature       1027167..1027285
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1045199_1045317"
                     /HighExp="LPhT, S7, S6, T-1.10H, Sw, LBGstat, S5, T-0.40H,
                     S8, T-1.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S341"
     CDS             1027286..1029043
                     /gene="bmrC"
                     /locus_tag="BSU_09710"
                     /old_locus_tag="BSU09710"
                     /function="16.1: Circulate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15855514, 16487324, 19167342, 21602923, 25217586"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15855514, 16487324,
                     19167342, 21602923, 25217586; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388852.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09710"
                     /db_xref="EnsemblGenomes-Tr:CAB12810"
                     /db_xref="GOA:O07550"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG13041"
                     /db_xref="UniProtKB/Swiss-Prot:O07550"
                     /translation="MFSVLKKLGWFFKAYWLRYTIAIVLLLAVNVIEMFPPKLLGNAI
                     DDMKAGAFTAEGLLFYIGIFFVLTAAVYIMSYFWMHQLFGGANLMEKILRTKLMGHLL
                     TMSPPFYEKNRTGDLMARGTNDLQAVSLTTGFGILTLVDSTMFMMTIFLTMGFLISWK
                     LTFAAIIPLPVMAIAISLYGSKIHERFTEAQNAFGALNDRVLESVSGVRVIRAYVQET
                     NDVRRFNEMTADVYQKNMKVAFIDSLFEPTVKLLVGASYLIGLGYGAFLVFRNELTLG
                     ELVSFNVYLGMMIWPMFAIGELINVMQRGNASLDRVNETLSYETDVTDPKQPADLKEP
                     GDIVFSHVSFTYPSSTSDNLQDISFTVRKGQTVGIAGKTGSGKTTIIKQLLRQYPPGE
                     GSITFSGVPIQQIPLDRLRGWIGYVPQDHLLFSRTVKENILYGKQDATDKEVQQAIAE
                     AHFEKDLHMLPSGLETMVGEKGVALSGGQKQRISIARALMANPEILILDDSLSAVDAK
                     TEAAIIKNIRENRKGKTTFILTHRLSAVEHADLILVMDGGVIAERGTHQELLANNGWY
                     REQYERQQLFTAEEGGAGA*"
     gene            1027286..1029043
                     /gene="bmrC"
                     /locus_tag="BSU_09710"
                     /old_locus_tag="BSU09710"
     CDS             1029040..1031061
                     /gene="bmrD"
                     /locus_tag="BSU_09720"
                     /old_locus_tag="BSU09720"
                     /function="16.1: Circulate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15855514, 16487324, 19167342, 21602923, 25217586"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15855514, 16487324,
                     19167342, 21602923, 25217586; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux ABC transporter (ATP-binding subunit)"
                     /protein_id="NP_388853.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09720"
                     /db_xref="EnsemblGenomes-Tr:CAB12811"
                     /db_xref="GOA:O07549"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR011527"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036640"
                     /db_xref="SubtiList:BG13040"
                     /db_xref="UniProtKB/Swiss-Prot:O07549"
                     /translation="MKIGKTLWRYALLYRKLLITAVLLLTVAVGAELTGPFIGKKMID
                     DHILGIEKTWYEAAEKDKNAVQFHGVSYVREDRLQEPVSKAKEAHIYQVGMAFYFVDQ
                     AVSFDGNRTVSDGKLTITNGDKSRAYAAEKLTKQELFQFYQPEIKGMVLLICLYGGLL
                     VFSVFFQYGQHYLLQMSANRIIQKMRQDVFSHIQKMPIRYFDNLPAGKVVARITNDTE
                     AIRDLYVTVLSTFVTSGIYMFGIFTALFLLDVKLAFVCLAIVPIIWLWSVIYRRYASY
                     YNQKIRSINSDINAKMNESIQGMTIIQAFRHQKETMREFEELNESHFYFQNRMLNLNS
                     LMSHNLVNVIRNLAFVCLIWHFGGASLNAAGIVSIGVLYAFVDYLNRLFQPITGIVNQ
                     FSKLELARVSAGRVFELLEEKNTEEAGEPAKERALGRVEFRDVSFAYQEGEEVLKHIS
                     FTAQKGETVALVGHTGSGKSSILNLLFRFYDAQKGDVLIDGKSIYNMSRQELRSHMGI
                     VLQDPYLFSGTIGSNVSLDDERMTEEEIKNALRQVGAEPLLKKLPKGINEPVIEKGST
                     LSSGERQLISFARALAFDPAILILDEATAHIDTETEAVIQKALDVVKQGRTTFVIAHR
                     LSTIRNADQILVLDKGEIVERGNHEELMALEGQYYQMYELQKGQKHSIA*"
     gene            1029040..1031061
                     /gene="bmrD"
                     /locus_tag="BSU_09720"
                     /old_locus_tag="BSU09720"
     downshifts      1031049
                     /Source="Nicolas_upshifts"
                     /id="D515"
                     /incds=0
                     /nref=69
                     /ntot=230
                     /MaxReadThrough="0.741399999999999"
                     /MaxDrop="5.11492"
                     /score="9.67206405"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U771"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1031110..1031730)
                     /gene="yheG"
                     /locus_tag="BSU_09730"
                     /old_locus_tag="BSU09730"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NADH-flavin oxidoreductase"
                     /protein_id="NP_388854.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09730"
                     /db_xref="EnsemblGenomes-Tr:CAB12812"
                     /db_xref="InterPro:IPR016040"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13039"
                     /db_xref="UniProtKB/Swiss-Prot:O07548"
                     /translation="MKIALLGASGRVGQAFLTQAAADERFDIFALIRSQHADLPLSKD
                     RTVMGNARRLEDVKKIMENAEIVISCLGTDGDDTLSTAMAHILSVMEEQHIKRLITIG
                     TAGILDSRYEPGKYRFETNESKRKQTRAAKEHAKVYEMLKESSLDWTIICPTYLPDGT
                     ATGVYRTERNVLPEGGTSISVGDTADFLYRELVTGEYVGNRVGLAY*"
     gene            complement(1031110..1031730)
                     /gene="yheG"
                     /locus_tag="BSU_09730"
                     /old_locus_tag="BSU09730"
     downshifts      complement(1031125)
                     /Source="Nicolas_upshifts"
                     /id="D516"
                     /incds=0
                     /nref=19
                     /ntot=169
                     /MaxReadThrough="1.82652"
                     /MaxDrop="3.00293"
                     /score="-0.293143554"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U772"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_no_box 1031715..1031815
                     /Source="Nicolas_upshift_promotors"
                     /id="U773"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.45954045954046"
                     /psig="0.043956043956044"
                     /xcortree=770
                     /SigmaFactorBS="ataaagcgattttcattaaaaaacctcctcgcctttcattat
                     aaaaggatgttctcagtttgaacagcgcgggaaagaatacctgtacaaataaacagaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     promotor_-10    complement(1031744..1031763)
                     /Source="Nicolas_upshift_promotors"
                     /id="U772"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.955044955044955"
                     /xcortree=2213
                     /SigmaFactorBS="catcgttctgtttatttgtacaggtattctttcccgcgCTGT
                     tcaaactgagaacaTCCTTTTATAATGAAAGGCGaggaggttttttaatgaaaatcgc
                     t"
                     /listShort="yheG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1031759)
                     /Source="Nicolas_upshifts"
                     /id="U772"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.955044955044955"
                     /xcortree=2213
                     /SigmaFactorBS="catcgttctgtttatttgtacaggtattctttcccgcgCTGT
                     tcaaactgagaacaTCCTTTTATAATGAAAGGCGaggaggttttttaatgaaaatcgc
                     t"
                     /listShort="yheG"
                     /GFF_Attribute="listLong"
     CDS             complement(1031769..1031894)
                     /gene="yheF"
                     /locus_tag="BSU_09740"
                     /old_locus_tag="BSU09740"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388855.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09740"
                     /db_xref="EnsemblGenomes-Tr:CAB12813"
                     /db_xref="SubtiList:BG13038"
                     /db_xref="UniProtKB/Swiss-Prot:O07547"
                     /translation="MSFITIVNWELVQFVSVSMIHEYVSHRSVYLYRYSFPRCSN*"
     gene            complement(1031769..1031894)
                     /gene="yheF"
                     /locus_tag="BSU_09740"
                     /old_locus_tag="BSU09740"
     upshifts        1031775
                     /Source="Nicolas_upshifts"
                     /id="U773"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.45954045954046"
                     /psig="0.043956043956044"
                     /xcortree=770
                     /SigmaFactorBS="ataaagcgattttcattaaaaaacctcctcgcctttcattat
                     aaaaggatgttctcagtttgaacagcgcgggaaagaatacctgtacaaataaacagaa
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1031778..1031781)
                     /Source="Nicolas_upshift_promotors"
                     /id="U772"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.844155844155844"
                     /psig="0.955044955044955"
                     /xcortree=2213
                     /SigmaFactorBS="catcgttctgtttatttgtacaggtattctttcccgcgCTGT
                     tcaaactgagaacaTCCTTTTATAATGAAAGGCGaggaggttttttaatgaaaatcgc
                     t"
                     /listShort="yheG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1031908..1031927)
                     /Source="Nicolas_upshift_promotors"
                     /id="U774"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1332
                     /SigmaFactorBS="agggcgcggtttccgcgctctctttatTTTGTCACCCttttt
                     tcctgctcCACATATCCTAGAAAAAAAGggagggaatcggggtgtcattcatcaccat
                     t"
                     /listShort="yheF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1031917)
                     /Source="Nicolas_upshifts"
                     /id="U774"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1332
                     /SigmaFactorBS="agggcgcggtttccgcgctctctttatTTTGTCACCCttttt
                     tcctgctcCACATATCCTAGAAAAAAAGggagggaatcggggtgtcattcatcaccat
                     t"
                     /listShort="yheF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1031941..1031950)
                     /Source="Nicolas_upshift_promotors"
                     /id="U774"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1332
                     /SigmaFactorBS="agggcgcggtttccgcgctctctttatTTTGTCACCCttttt
                     tcctgctcCACATATCCTAGAAAAAAAGggagggaatcggggtgtcattcatcaccat
                     t"
                     /listShort="yheF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1031973
                     /Source="Nicolas_upshifts"
                     /id="D517"
                     /incds=0
                     /nref=6
                     /ntot=22
                     /MaxReadThrough="0.352760000000001"
                     /MaxDrop="4.67633"
                     /score="9.67206405"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U773"
                     /TUdmin=88
                     /isTUend="FALSE"
     CDS             complement(1031999..1032202)
                     /gene="sspB"
                     /locus_tag="BSU_09750"
                     /old_locus_tag="BSU09750"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:3009398, 9572981, 16707666, 19659696, 26790838"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3009398, 9572981,
                     16707666, 19659696, 26790838; Product type cp: cell
                     process"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein (beta-type
                     SASP)"
                     /protein_id="NP_388856.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09750"
                     /db_xref="EnsemblGenomes-Tr:CAB12814"
                     /db_xref="GOA:P04832"
                     /db_xref="InterPro:IPR001448"
                     /db_xref="InterPro:IPR018126"
                     /db_xref="SubtiList:BG10787"
                     /db_xref="UniProtKB/Swiss-Prot:P04832"
                     /translation="MANQNSSNDLLVPGAAQAIDQMKLEIASEFGVNLGADTTSRANG
                     SVGGEITKRLVSFAQQQMGGRVQ*"
     gene            complement(1031999..1032202)
                     /gene="sspB"
                     /locus_tag="BSU_09750"
                     /old_locus_tag="BSU09750"
     downshifts      complement(1032004)
                     /Source="Nicolas_upshifts"
                     /id="D518"
                     /incds=0
                     /nref=72
                     /ntot=93
                     /MaxReadThrough="1.27819"
                     /MaxDrop="8.55895"
                     /score="22.2113888"
                     /energy="-16"
                     /TU="NA"
                     /idTUdmin="U776"
                     /TUdmin=1
                     /isTUend="TRUE"
     S_feature       complement(1032203..1032313)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1050235_1050345_c"
                     /HighExp="S8, S5, S7, S6, S4, G/S, Pyr, ferm, BT, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S342"
     promotor_no_box 1032243..1032343
                     /Source="Nicolas_upshift_promotors"
                     /id="U775"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.665334665334665"
                     /psig="0.090909090909091"
                     /xcortree=696
                     /SigmaFactorBS="ggagttgcaccaatctgtgaacccttctcgggtgtcactgcc
                     gcctcggcgtaacccaatgctttgccggcttgttactacgtattatgttaaaatggcc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        1032303
                     /Source="Nicolas_upshifts"
                     /id="U775"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.665334665334665"
                     /psig="0.090909090909091"
                     /xcortree=696
                     /SigmaFactorBS="ggagttgcaccaatctgtgaacccttctcgggtgtcactgcc
                     gcctcggcgtaacccaatgctttgccggcttgttactacgtattatgttaaaatggcc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     upshifts        complement(1032319)
                     /Source="Nicolas_upshifts"
                     /id="U776"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=836
                     /SigmaFactorBS="ctcaagatttaccacacaattctcCGCATGAttttccggcca
                     tttTAACATAATACGtagtaacaagccggcaaagcattgggttacgccgaggcggcag
                     t"
                     /listShort="S342, sspB"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1032323..1032334)
                     /Source="Nicolas_upshift_promotors"
                     /id="U776"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=836
                     /SigmaFactorBS="ctcaagatttaccacacaattctcCGCATGAttttccggcca
                     tttTAACATAATACGtagtaacaagccggcaaagcattgggttacgccgaggcggcag
                     t"
                     /listShort="S342, sspB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(1032349..1032355)
                     /Source="Nicolas_upshift_promotors"
                     /id="U776"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=836
                     /SigmaFactorBS="ctcaagatttaccacacaattctcCGCATGAttttccggcca
                     tttTAACATAATACGtagtaacaagccggcaaagcattgggttacgccgaggcggcag
                     t"
                     /listShort="S342, sspB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1032411..1032629)
                     /gene="yheE"
                     /locus_tag="BSU_09760"
                     /old_locus_tag="BSU09760"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein (sporulation /
                     germination island)"
                     /protein_id="NP_388857.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09760"
                     /db_xref="EnsemblGenomes-Tr:CAB12815"
                     /db_xref="InterPro:IPR017263"
                     /db_xref="SubtiList:BG13037"
                     /db_xref="UniProtKB/Swiss-Prot:O07546"
                     /translation="MAVMISHFSWKPLFPKEKLPGWKISFYYKGTHYEGIYHKSGEIE
                     WGDLFPARADEPALTNEIHELMLFHIYD*"
     gene            complement(1032411..1032629)
                     /gene="yheE"
                     /locus_tag="BSU_09760"
                     /old_locus_tag="BSU09760"
     downshifts      complement(1032445)
                     /Source="Nicolas_upshifts"
                     /id="D519"
                     /incds=0
                     /nref=5
                     /ntot=83
                     /MaxReadThrough="0.43384"
                     /MaxDrop="3.42951"
                     /score="37.4339943"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U777"
                     /TUdmin=110
                     /isTUend="FALSE"
     promotor_-10    complement(1032670..1032689)
                     /Source="Nicolas_upshift_promotors"
                     /id="U777"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.609390609390609"
                     /psig="0.996003996003996"
                     /xcortree=419
                     /SigmaFactorBS="ctttatccaaagctgggacaaactgcatatttaggccTCTTC
                     AATgatgttctgaaacAATGATACAATGAACATAAGccgtttttatttaggtcaattg
                     a"
                     /listShort="yheE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1032687)
                     /Source="Nicolas_upshifts"
                     /id="U777"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.609390609390609"
                     /psig="0.996003996003996"
                     /xcortree=419
                     /SigmaFactorBS="ctttatccaaagctgggacaaactgcatatttaggccTCTTC
                     AATgatgttctgaaacAATGATACAATGAACATAAGccgtttttatttaggtcaattg
                     a"
                     /listShort="yheE"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1032703..1032710)
                     /Source="Nicolas_upshift_promotors"
                     /id="U777"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.609390609390609"
                     /psig="0.996003996003996"
                     /xcortree=419
                     /SigmaFactorBS="ctttatccaaagctgggacaaactgcatatttaggccTCTTC
                     AATgatgttctgaaacAATGATACAATGAACATAAGccgtttttatttaggtcaattg
                     a"
                     /listShort="yheE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1032779..1034140)
                     /gene="spaD"
                     /locus_tag="BSU_09770"
                     /old_locus_tag="BSU09770"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15231775, 25035995"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15231775, 25035995;
                     Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat associated protein"
                     /protein_id="NP_388858.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09770"
                     /db_xref="EnsemblGenomes-Tr:CAB12816"
                     /db_xref="GOA:O07545"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR026838"
                     /db_xref="SubtiList:BG13036"
                     /db_xref="UniProtKB/Swiss-Prot:O07545"
                     /translation="MNPKRFLIGIDKTSENTLFLPSSLKQDGLLHAAFGTKVVRCHVA
                     YRRHLEQTVLLSENLFHELLLPHRSRADILIHDHTVHIGPLVGIFTAGFTVSLERPFK
                     DRSLFFSKLVTLHEQAGGYCFVFGAHQINWEEGTIEGLLYRENGWEKKIVPLPNVVYD
                     RLPNRKIEDSLLLQHTKKRLIDEYQIPWFNKTFFNKWNVHQLLEKDPRTAPFLPRSEL
                     TPSVELIDELCGAYKKVYIKPANGALGTGIYQLTRTDGGLTVKHTNDAKTFTSIDYSD
                     AASFLAEFQKHHNPSDFLIQQGVDLIEFQGKPADFRVHTNKNRKGKWTVTAIAVKISG
                     KNSITTHLSNGGTVKTLAEVYDDPAERVEVIKKLSAAALTASHVLHDHIEGFIGEIGF
                     DFGIDQNGKVWMFEANSRPGRSIFSHPNLHHVDSLTKRRSFEYASYLSEKAITSPEAL
                     WPS*"
     gene            complement(1032779..1034140)
                     /gene="spaD"
                     /locus_tag="BSU_09770"
                     /old_locus_tag="BSU09770"
     downshifts      complement(1032797)
                     /Source="Nicolas_upshifts"
                     /id="D520"
                     /incds=0
                     /nref=3
                     /ntot=26
                     /MaxReadThrough="2.33323"
                     /MaxDrop="3.7968"
                     /score="37.4339943"
                     /energy="-11.8"
                     /TU="NA"
                     /idTUdmin="U779"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(1032841)
                     /Source="Nicolas_upshifts"
                     /id="D521"
                     /incds=1
                     /nref=2
                     /ntot=45
                     /MaxReadThrough="5.29177"
                     /MaxDrop="3.36501"
                     /score="37.4339943"
                     /energy="-11.8"
                     /TU="U779"
                     /idTUdmin="U779"
                     /TUdmin="-44"
                     /isTUend="FALSE"
     CDS             complement(1034130..1035221)
                     /gene="spaC"
                     /locus_tag="BSU_09780"
                     /old_locus_tag="BSU09780"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 15231775, 25035995;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat associated protein, subunit C"
                     /protein_id="NP_388859.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09780"
                     /db_xref="EnsemblGenomes-Tr:CAB12817"
                     /db_xref="GOA:O07544"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR026838"
                     /db_xref="SubtiList:BG13035"
                     /db_xref="UniProtKB/Swiss-Prot:O07544"
                     /translation="MITLGFMSLSRQHEADYSAELAKRAPEFGIRFIRFTPFDISPDT
                     LRVKASVYHSASSTWNETEMAIPDYIYDRCFYGKDSHSQKAKPIVEWLKKYPKTEFIG
                     RGLPDKWTVLHDLQQHSVINPYIPETIKVSRYEQIHSFLSKEKACILKPAFGAGGRGV
                     ILLKLGKKNITATYHIGKDKQTKTFSNQTSFKTWCKKVLQHQYLLQPYLNIQDKEQYP
                     CDIRLFMEKNEAGEWNTVGKAVRRGYKHGLLANLSGGSDALTFDSWFEDIPKKQQVVL
                     LDDVFSITQSVPYYLDERYGPLFELGLDICLAKDGRIWILDINSKPGRKSILRVSPEQ
                     KEQLYTCPLKRCQYLFSEQSQKGVLPRES*"
     gene            complement(1034130..1035221)
                     /gene="spaC"
                     /locus_tag="BSU_09780"
                     /old_locus_tag="BSU09780"
     promotor_-10    complement(1034545..1034559)
                     /Source="Nicolas_upshift_promotors"
                     /id="U778"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.63936063936064"
                     /psig="0.63936063936064"
                     /xcortree=613
                     /SigmaFactorBS="aatatttgcttcagccttacttaaacattcaagataAGGAAC
                     AATacccttgtgatatTCGTCTGTTTATGGAaaaaaacgaagcaggtgaatggaatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1034557)
                     /Source="Nicolas_upshifts"
                     /id="U778"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.63936063936064"
                     /psig="0.63936063936064"
                     /xcortree=613
                     /SigmaFactorBS="aatatttgcttcagccttacttaaacattcaagataAGGAAC
                     AATacccttgtgatatTCGTCTGTTTATGGAaaaaaacgaagcaggtgaatggaatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1034573..1034581)
                     /Source="Nicolas_upshift_promotors"
                     /id="U778"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.63936063936064"
                     /psig="0.63936063936064"
                     /xcortree=613
                     /SigmaFactorBS="aatatttgcttcagccttacttaaacattcaagataAGGAAC
                     AATacccttgtgatatTCGTCTGTTTATGGAaaaaaacgaagcaggtgaatggaatac
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(1035222..1035327)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1053254_1053359_c"
                     /HighExp="S4, B36, S5, S6, S7, S8, B60, S3, T5.0H, BT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S343"
     promotor_-10    complement(1035311..1035329)
                     /Source="Nicolas_upshift_promotors"
                     /id="U779"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1099
                     /SigmaFactorBS="ggagacaaattcctgttcttagaaaatcagcttgttcttttG
                     GAATAgggcaaggtggagaaTCGTATTCTGTAAAGTAGAataccgtcagctgcgttcg
                     t"
                     /listShort="S343, yheC, yheD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1035331)
                     /Source="Nicolas_upshifts"
                     /id="U779"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1099
                     /SigmaFactorBS="ggagacaaattcctgttcttagaaaatcagcttgttcttttG
                     GAATAgggcaaggtggagaaTCGTATTCTGTAAAGTAGAataccgtcagctgcgttcg
                     t"
                     /listShort="S343, yheC, yheD"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1035345..1035350)
                     /Source="Nicolas_upshift_promotors"
                     /id="U779"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1099
                     /SigmaFactorBS="ggagacaaattcctgttcttagaaaatcagcttgttcttttG
                     GAATAgggcaaggtggagaaTCGTATTCTGTAAAGTAGAataccgtcagctgcgttcg
                     t"
                     /listShort="S343, yheC, yheD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1035393..1035400
                     /Source="Nicolas_upshift_promotors"
                     /id="U780"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2000
                     /SigmaFactorBS="ttttctaagaacaggaatttgtctcctCGTTTGCTaagtgat
                     tgcatgaGCCTCTATAATACGTATAGGtacataatctatatgaaaaaagctgaagcac
                     a"
                     /listShort="yheB, S344, yheA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1035415..1035434
                     /Source="Nicolas_upshift_promotors"
                     /id="U780"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2000
                     /SigmaFactorBS="ttttctaagaacaggaatttgtctcctCGTTTGCTaagtgat
                     tgcatgaGCCTCTATAATACGTATAGGtacataatctatatgaaaaaagctgaagcac
                     a"
                     /listShort="yheB, S344, yheA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1035426
                     /Source="Nicolas_upshifts"
                     /id="U780"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2000
                     /SigmaFactorBS="ttttctaagaacaggaatttgtctcctCGTTTGCTaagtgat
                     tgcatgaGCCTCTATAATACGTATAGGtacataatctatatgaaaaaagctgaagcac
                     a"
                     /listShort="yheB, S344, yheA"
                     /GFF_Attribute="listLong"
     CDS             1035488..1036621
                     /gene="yheB"
                     /locus_tag="BSU_09790"
                     /old_locus_tag="BSU09790"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16684363"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388860.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09790"
                     /db_xref="EnsemblGenomes-Tr:CAB12818"
                     /db_xref="GOA:O07543"
                     /db_xref="InterPro:IPR007383"
                     /db_xref="InterPro:IPR016991"
                     /db_xref="SubtiList:BG13034"
                     /db_xref="UniProtKB/Swiss-Prot:O07543"
                     /translation="MGIAGTFIFMIVIGAAIGAVTNHLAIQMLFRPYKAYYLFGKRVP
                     FTPGLIPRRRDELAKQMGLMVVNHLLTPEGIKKRLVSDAAKTQALRVGEQLIQKLSLS
                     EVTVKEALEKAGMKRPEKAADAWISSWTDDKLHELFRQYGDQSLKELVPIEVQEKLEE
                     KIPMISGYILSRSVRYFESDEGKIRLGNMIDDFLKERGMLGSMVQLFLGNSSLADRVL
                     PELLKFLRNEETNKLLSDLLKNEWGKLREYTFNEADEKWNAKALIFSLKRRVLQAFST
                     APFFNNTIGTLTVRYESELTQQMLPALLDKLLEGISSNLESVLKRLRLEEIVKEQVDQ
                     FPVERLEEMVLSISKKEFKMITYLGGLLGGIIGAIQALFVILF*"
     gene            1035488..1036621
                     /gene="yheB"
                     /locus_tag="BSU_09790"
                     /old_locus_tag="BSU09790"
     S_feature       1036622..1036713
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1054654_1054745"
                     /HighExp="S4, S5, S6, BT, S3, S7, dia15, B36, G/S, LoTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S344"
     CDS             1036714..1037067
                     /gene="yheA"
                     /locus_tag="BSU_09800"
                     /old_locus_tag="BSU09800"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 19429628, 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388861.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09800"
                     /db_xref="EnsemblGenomes-Tr:CAB12819"
                     /db_xref="InterPro:IPR010368"
                     /db_xref="InterPro:IPR023378"
                     /db_xref="PDB:2OEE"
                     /db_xref="SubtiList:BG13033"
                     /db_xref="UniProtKB/Swiss-Prot:O07542"
                     /translation="MAVNFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRMFEN
                     FRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHEKISQLMEAEQRMSMLIGELNK
                     IIMKPLEELYGSVEG*"
     gene            1036714..1037067
                     /gene="yheA"
                     /locus_tag="BSU_09800"
                     /old_locus_tag="BSU09800"
     downshifts      1037055
                     /Source="Nicolas_upshifts"
                     /id="D522"
                     /incds=0
                     /nref=159
                     /ntot=259
                     /MaxReadThrough="1.55668"
                     /MaxDrop="5.9901"
                     /score="24.5275597"
                     /energy="-12.3"
                     /TU="NA"
                     /idTUdmin="U780"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1037111..1038184)
                     /gene="yhaZ"
                     /locus_tag="BSU_09810"
                     /old_locus_tag="BSU09810"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16267290, 22933559"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388862.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09810"
                     /db_xref="EnsemblGenomes-Tr:CAB12820"
                     /db_xref="GOA:O07541"
                     /db_xref="InterPro:IPR011989"
                     /db_xref="InterPro:IPR014825"
                     /db_xref="InterPro:IPR016024"
                     /db_xref="InterPro:IPR021133"
                     /db_xref="SubtiList:BG13002"
                     /db_xref="UniProtKB/Swiss-Prot:O07541"
                     /translation="MADLKEIYNEELISQLIHHVRSSYPDFNKNRFLDTLRLEDWPEL
                     TLKERMRRVTVSLYETLPKQYVEALTILRDTAPHFKGLSGILFPDYVEQYGLAHWEES
                     IKALESFTQYSTSEFAVRPFLLLDQEKMIAQLLAWSEHKNEHVRRLASEGSRPRLPWG
                     KSIPALKSDPSPVLPILEKLMQDESLYVRKSVANNLNDISKTHPHLLRKVADQWYGTH
                     PHTDWIIKHAYRTLLKKGDKQALALFGYENADSIQLHDLTCQPKRIVIGESLEFSFYI
                     HSDRDQKVRIEYAIDFVKARGQRHQKVFKITETNIRKNETKSYTRIQSFKDLTTRKHY
                     KGIHTLSVIINGEVKDSLDFQVC*"
     gene            complement(1037111..1038184)
                     /gene="yhaZ"
                     /locus_tag="BSU_09810"
                     /old_locus_tag="BSU09810"
     downshifts      complement(1037218)
                     /Source="Nicolas_upshifts"
                     /id="D523"
                     /incds=1
                     /nref=16
                     /ntot=173
                     /MaxReadThrough="3.78071"
                     /MaxDrop="3.586"
                     /score="4.43596345"
                     /energy="-12.3"
                     /TU="U781"
                     /idTUdmin="U781"
                     /TUdmin="-109"
                     /isTUend="FALSE"
     promotor_-10    complement(1038206..1038225)
                     /Source="Nicolas_upshift_promotors"
                     /id="U781"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig=1
                     /xcortree=2090
                     /SigmaFactorBS="ggtaggatcagttgttaatttttaggactataCACTTGATcc
                     agaacgtacatTCCCATACAATATAAATAATaaacgaaaaagcggtgtttatatggct
                     g"
                     /listShort="yhaZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1038218)
                     /Source="Nicolas_upshifts"
                     /id="U781"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig=1
                     /xcortree=2090
                     /SigmaFactorBS="ggtaggatcagttgttaatttttaggactataCACTTGATcc
                     agaacgtacatTCCCATACAATATAAATAATaaacgaaaaagcggtgtttatatggct
                     g"
                     /listShort="yhaZ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1038239..1038246)
                     /Source="Nicolas_upshift_promotors"
                     /id="U781"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.93006993006993"
                     /psig=1
                     /xcortree=2090
                     /SigmaFactorBS="ggtaggatcagttgttaatttttaggactataCACTTGATcc
                     agaacgtacatTCCCATACAATATAAATAATaaacgaaaaagcggtgtttatatggct
                     g"
                     /listShort="yhaZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1038321..1038328
                     /Source="Nicolas_upshift_promotors"
                     /id="U782"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=344
                     /SigmaFactorBS="ggatatacaaaagttggttactttttttagttaaaaaaacCC
                     TTGTCAtcggaaaggaaaacTGAGATAATAACATTGAAAGcgcctacacttacctatt
                     t"
                     /listShort="S345, S346, yhaX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1038341
                     /Source="Nicolas_upshifts"
                     /id="U782"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=344
                     /SigmaFactorBS="ggatatacaaaagttggttactttttttagttaaaaaaacCC
                     TTGTCAtcggaaaggaaaacTGAGATAATAACATTGAAAGcgcctacacttacctatt
                     t"
                     /listShort="S345, S346, yhaX"
                     /GFF_Attribute="listLong"
     promotor_-10    1038343..1038362
                     /Source="Nicolas_upshift_promotors"
                     /id="U782"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.882117882117882"
                     /psig=1
                     /xcortree=344
                     /SigmaFactorBS="ggatatacaaaagttggttactttttttagttaaaaaaacCC
                     TTGTCAtcggaaaggaaaacTGAGATAATAACATTGAAAGcgcctacacttacctatt
                     t"
                     /listShort="S345, S346, yhaX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1038352..1038505
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1056384_1056537"
                     /HighExp="M9-stat, BC, T0.30H, T1.30H, Lbstat, T1.0H,
                     T3.30H, T2.0H, T3.0H, M40t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S345"
     downshifts      1038462
                     /Source="Nicolas_upshifts"
                     /id="D524"
                     /incds=0
                     /nref=1
                     /ntot=37
                     /MaxReadThrough="7.40404"
                     /MaxDrop="2.6506"
                     /score="-6.05745557"
                     /energy="-4.8"
                     /TU="U782"
                     /idTUdmin="U782"
                     /TUdmin="-1056"
                     /isTUend="FALSE"
     S_feature       1038507..1038590
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1056539_1056622"
                     /HighExp="M9-stat, B60, T2.0H, T1.30H, T0.30H, T2.30H,
                     T3.0H, T1.0H, Lbtran, BC"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S346"
     downshifts      1038547
                     /Source="Nicolas_upshifts"
                     /id="D525"
                     /incds=0
                     /nref=70
                     /ntot=231
                     /MaxReadThrough="4.88371"
                     /MaxDrop="4.4099"
                     /score="-6.05745557"
                     /energy="-4.8"
                     /TU="U782"
                     /idTUdmin="U782"
                     /TUdmin="-971"
                     /isTUend="FALSE"
     promotor_-35    1038603..1038608
                     /Source="Nicolas_upshift_promotors"
                     /id="U783"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1164
                     /SigmaFactorBS="gccaggctttttttgctttaagaaaaggttGTTCTAaacaca
                     gagacagggTCATATCCTATACACAAGTacagtcatcaaggagggggacatctctgtg
                     t"
                     /listShort="yhaX, hemZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1038624..1038642
                     /Source="Nicolas_upshift_promotors"
                     /id="U783"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1164
                     /SigmaFactorBS="gccaggctttttttgctttaagaaaaggttGTTCTAaacaca
                     gagacagggTCATATCCTATACACAAGTacagtcatcaaggagggggacatctctgtg
                     t"
                     /listShort="yhaX, hemZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1038633
                     /Source="Nicolas_upshifts"
                     /id="U783"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1164
                     /SigmaFactorBS="gccaggctttttttgctttaagaaaaggttGTTCTAaacaca
                     gagacagggTCATATCCTATACACAAGTacagtcatcaaggagggggacatctctgtg
                     t"
                     /listShort="yhaX, hemZ"
                     /GFF_Attribute="listLong"
     CDS             1038670..1039536
                     /gene="yhaX"
                     /locus_tag="BSU_09830"
                     /old_locus_tag="BSU09830"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11988534; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388864.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09830"
                     /db_xref="EnsemblGenomes-Tr:CAB12822"
                     /db_xref="GOA:O07539"
                     /db_xref="InterPro:IPR000150"
                     /db_xref="InterPro:IPR006379"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="PDB:3DNP"
                     /db_xref="SubtiList:BG13000"
                     /db_xref="UniProtKB/Swiss-Prot:O07539"
                     /translation="MSKQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTN
                     RHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCN
                     IRLLHEKYSIGNKKKVNSNLLGKALIHPSDPIFYPVQFVESLSDLLMDEPVSAPVIEV
                     YTEHDIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDV
                     VAIGHQYDDLPMIELAGLGVAMGNAVPEIKRKADWVTRSNDEQGVAYMMKEYFRMQQR
                     KGFLDKFHMKRV*"
     gene            1038670..1039536
                     /gene="yhaX"
                     /locus_tag="BSU_09830"
                     /old_locus_tag="BSU09830"
     downshifts      1039518
                     /Source="Nicolas_upshifts"
                     /id="D526"
                     /incds=0
                     /nref=22
                     /ntot=67
                     /MaxReadThrough="3.99904"
                     /MaxDrop="4.7771"
                     /score="15.7706912"
                     /energy="-16.6"
                     /TU="U783"
                     /idTUdmin="U782"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1039581..1039584
                     /Source="Nicolas_upshift_promotors"
                     /id="U784"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1455
                     /SigmaFactorBS="cgcgccctgacaggtgcggcggcttttttgccggATTGattt
                     tagcagtttaTTTCTGTACACTAAAGAAAGttttgaatctgataaattaggtgatgaa
                     g"
                     /listShort="hemZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1039599..1039618
                     /Source="Nicolas_upshift_promotors"
                     /id="U784"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1455
                     /SigmaFactorBS="cgcgccctgacaggtgcggcggcttttttgccggATTGattt
                     tagcagtttaTTTCTGTACACTAAAGAAAGttttgaatctgataaattaggtgatgaa
                     g"
                     /listShort="hemZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1039607
                     /Source="Nicolas_upshifts"
                     /id="U784"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.786213786213786"
                     /psig=1
                     /xcortree=1455
                     /SigmaFactorBS="cgcgccctgacaggtgcggcggcttttttgccggATTGattt
                     tagcagtttaTTTCTGTACACTAAAGAAAGttttgaatctgataaattaggtgatgaa
                     g"
                     /listShort="hemZ"
                     /GFF_Attribute="listLong"
     CDS             1039648..1041153
                     /gene="hemZ"
                     /locus_tag="BSU_09840"
                     /old_locus_tag="BSU09840"
                     /EC_number="1.3.99.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10498703, 21255303"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10498703, 21255303;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase"
                     /protein_id="NP_388865.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09840"
                     /db_xref="EnsemblGenomes-Tr:CAB12823"
                     /db_xref="GOA:Q796V8"
                     /db_xref="InterPro:IPR006638"
                     /db_xref="InterPro:IPR007197"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR023995"
                     /db_xref="InterPro:IPR034505"
                     /db_xref="SubtiList:BG12999"
                     /db_xref="UniProtKB/Swiss-Prot:Q796V8"
                     /translation="MQIKIEGIHDDRLHRPLQNIANLFYEECELAYGGEEPADFVISL
                     ALSQTDEHVTVSGEVKGTGIKEQHTKFFSPDMTEKEAFKQVKNTISYVYLNLLQAHTG
                     ITQKWGILTGIRPTKLLHKKLQSGMSKEQAHAELKKDYLIHDEKIMLMQEIVDRQLAA
                     VPDLYRVKDEVSIYIGIPFCPTKCAYCTFPAYAIQGQAGRVGSFLWGLHYEMQKIGEW
                     LKEHDVKVTTIYFGGGTPTSITAEEMDLLYEEMVRSFPDVKNIREITVEAGRPDTITE
                     EKLAVLNKYDIDRISINPQSYENETLKAIGRHHTVEETIEKYHLSRQHGMNNINMDLI
                     IGLPGEGVKEFRHSLSETEKLMPESLTVHTLSFKRASEMTRNKHKYKVAGREEVSQMM
                     EDAVAWTKEHGYVPYYLYRQKNILGNLENVGYSLPGQESIYNIMIMEEVQTIIGIGCG
                     AASKFIDRDTGKITHFANPKDPKSYNERFEHYTDEKIKYLEQIFEKTTKQH*"
     gene            1039648..1041153
                     /gene="hemZ"
                     /locus_tag="BSU_09840"
                     /old_locus_tag="BSU09840"
     downshifts      1041123
                     /Source="Nicolas_upshifts"
                     /id="D527"
                     /incds=0
                     /nref=113
                     /ntot=234
                     /MaxReadThrough="0.523269999999999"
                     /MaxDrop="5.05369"
                     /score="38.1573779"
                     /energy="-14.4"
                     /TU="NA"
                     /idTUdmin="U783"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(1041171..1042388)
                     /gene="khtU"
                     /locus_tag="BSU_09850"
                     /old_locus_tag="BSU09850"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7934942, 14987767, 15849754, 15919996, 16850406,
                     24330391"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7934942, 14987767,
                     15849754, 15919996, 16850406, 24330391; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proton/potassium antiporter; methylglyoxal
                     resistance"
                     /protein_id="NP_388866.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09850"
                     /db_xref="EnsemblGenomes-Tr:CAB12825"
                     /db_xref="GOA:O07536"
                     /db_xref="InterPro:IPR006153"
                     /db_xref="SubtiList:BG12997"
                     /db_xref="UniProtKB/Swiss-Prot:O07536"
                     /translation="MDHLVFEVGTALVLVAIASVIANKIKFSIIPFLIVLGMLVGPHA
                     PKMGIIDLTFIQSSEIIEFFGRMGVLFLLFYLGLEFSVGKLIKSGKSIAVGGTIYILI
                     NFSLGLLYGFITGFSFLEVLILAGVITISSSAIVAKVLVDLKRTANPETELILGIIMF
                     EDIFLAVYLSVVSGLILGDATSVGSALLSILIAFGYMLLFFIAARKLPPLLNKLLDIR
                     SNEVFIIVIFAALFFIAGFSETIHVAEAIGALLLGLVFSETEHSDRIEHLVVPFRDFF
                     GAMFFFSFGLSIDPFSLGEAVWLALGAVILTILGNFIAGMVAGRRAGLSHKASSNIGL
                     TIVSRGEFSIIVANLGIAGGLSATLKPFAALYVLILAILGPLVTKESKRIYRLLNKVF
                     KWKPEVQPAKKQG*"
     gene            complement(1041171..1042388)
                     /gene="khtU"
                     /locus_tag="BSU_09850"
                     /old_locus_tag="BSU09850"
     downshifts      complement(1041177)
                     /Source="Nicolas_upshifts"
                     /id="D528"
                     /incds=0
                     /nref=154
                     /ntot=249
                     /MaxReadThrough="1.74386"
                     /MaxDrop="6.8685"
                     /score="8.64654688"
                     /energy="-14.4"
                     /TU="NA"
                     /idTUdmin="U785"
                     /TUdmin=1
                     /isTUend="TRUE"
     CDS             complement(1042395..1042892)
                     /gene="khtT"
                     /locus_tag="BSU_09860"
                     /old_locus_tag="BSU09860"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:14987767, 17679694"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14987767, 17679694;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="K+/H+ antiporter for K+ efflux"
                     /protein_id="NP_388867.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09860"
                     /db_xref="EnsemblGenomes-Tr:CAB12826"
                     /db_xref="GOA:O07535"
                     /db_xref="InterPro:IPR006037"
                     /db_xref="InterPro:IPR026278"
                     /db_xref="InterPro:IPR036721"
                     /db_xref="SubtiList:BG12996"
                     /db_xref="UniProtKB/Swiss-Prot:O07535"
                     /translation="MNIKENDLPGIGKKFEIETRSHEKMTIIIHDDGRREIYRFNDRD
                     PDELLSNISLDDSEARQIAAILGGMVYKPQALESIEMAFSDLIIEWFKVEKGAKSIGR
                     TLGELDVRQNYDVTVIAIIKHNQEKLLNPGADSIIEENDTLVLSGERKHLKKLIHDFL
                     SGEGV*"
     gene            complement(1042395..1042892)
                     /gene="khtT"
                     /locus_tag="BSU_09860"
                     /old_locus_tag="BSU09860"
     CDS             complement(1042956..1043294)
                     /gene="khtS"
                     /locus_tag="BSU_09870"
                     /old_locus_tag="BSU09870"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:14987767, 17679694"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14987767, 17679694;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="K+/H+ antiporter for K+ efflux"
                     /protein_id="NP_388868.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09870"
                     /db_xref="EnsemblGenomes-Tr:CAB12827"
                     /db_xref="GOA:O07534"
                     /db_xref="SubtiList:BG12995"
                     /db_xref="UniProtKB/Swiss-Prot:O07534"
                     /translation="MRREERNMDKLLISFLLSLFMVYFPPSDVVLPSQFEASTDSYVP
                     MSSYPQETQSAKTPSPGSMHPAELIKEYSPLAQSVRQLSVKPLDEPLINRLEKALAVP
                     VKYQSNYLRI*"
     gene            complement(1042956..1043294)
                     /gene="khtS"
                     /locus_tag="BSU_09870"
                     /old_locus_tag="BSU09870"
     promotor_-10    complement(1043306..1043325)
                     /Source="Nicolas_upshift_promotors"
                     /id="U785"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig="0.97902097902098"
                     /xcortree=628
                     /SigmaFactorBS="acctttttatttttcaaggtcaatagatactgaaaaatgcat
                     atTGTTTGAAtggaaacataaagTTTTATATAGTGAAAAAGAAgggatatcttgatga
                     g"
                     /listShort="khtS, khtT, yhaU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1043330)
                     /Source="Nicolas_upshifts"
                     /id="U785"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig="0.97902097902098"
                     /xcortree=628
                     /SigmaFactorBS="acctttttatttttcaaggtcaatagatactgaaaaatgcat
                     atTGTTTGAAtggaaacataaagTTTTATATAGTGAAAAAGAAgggatatcttgatga
                     g"
                     /listShort="khtS, khtT, yhaU"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1043339..1043346)
                     /Source="Nicolas_upshift_promotors"
                     /id="U785"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig="0.97902097902098"
                     /xcortree=628
                     /SigmaFactorBS="acctttttatttttcaaggtcaatagatactgaaaaatgcat
                     atTGTTTGAAtggaaacataaagTTTTATATAGTGAAAAAGAAgggatatcttgatga
                     g"
                     /listShort="khtS, khtT, yhaU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1043366..1043373
                     /Source="Nicolas_upshift_promotors"
                     /id="U786"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig="0.971028971028971"
                     /xcortree=364
                     /SigmaFactorBS="attcaaacaatatgcatttttcagtatcTATTGACCttgaaa
                     aataaaaaGGTTTATTTGGGGATGGCGGggaatgtataggagaaagaaaaaagtaagc
                     g"
                     /listShort="yhaR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1043388..1043407
                     /Source="Nicolas_upshift_promotors"
                     /id="U786"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig="0.971028971028971"
                     /xcortree=364
                     /SigmaFactorBS="attcaaacaatatgcatttttcagtatcTATTGACCttgaaa
                     aataaaaaGGTTTATTTGGGGATGGCGGggaatgtataggagaaagaaaaaagtaagc
                     g"
                     /listShort="yhaR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1043398
                     /Source="Nicolas_upshifts"
                     /id="U786"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig="0.971028971028971"
                     /xcortree=364
                     /SigmaFactorBS="attcaaacaatatgcatttttcagtatcTATTGACCttgaaa
                     aataaaaaGGTTTATTTGGGGATGGCGGggaatgtataggagaaagaaaaaagtaagc
                     g"
                     /listShort="yhaR"
                     /GFF_Attribute="listLong"
     CDS             1043459..1044226
                     /gene="yhaR"
                     /locus_tag="BSU_09880"
                     /old_locus_tag="BSU09880"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22961985; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative dehydratase / isomerase"
                     /protein_id="NP_388869.3"
                     /db_xref="EnsemblGenomes-Gn:BSU09880"
                     /db_xref="EnsemblGenomes-Tr:CAB12828"
                     /db_xref="GOA:O07533"
                     /db_xref="InterPro:IPR001753"
                     /db_xref="InterPro:IPR014748"
                     /db_xref="InterPro:IPR029045"
                     /db_xref="SubtiList:BG12994"
                     /db_xref="UniProtKB/Swiss-Prot:O07533"
                     /translation="MEFVQYACNGAVAEIILNRPDAHHALNEQMLSELKEAVEMAAAS
                     EALIVLLRGSGKGFSAGGDIRMMTSEHDPDQFKRLMDTIEAVTLNLYQMKKVTIAAIH
                     GAAAGLGLSLALCADIVLAEKNAVLAMNFIGIGLVPDGGGHYLLKKRIGEAKAKKLIW
                     SGKKLSASEAADMGLLDGTFAGDPAEGARPIIETLLASPLLAMIETKGIFQSLQIEEL
                     KKVLSLERSAQERMRRTKDHQEGIRAFLEKREPKFQA*"
     gene            1043459..1044226
                     /gene="yhaR"
                     /locus_tag="BSU_09880"
                     /old_locus_tag="BSU09880"
     downshifts      1044227
                     /Source="Nicolas_upshifts"
                     /id="D529"
                     /incds=0
                     /nref=2
                     /ntot=99
                     /MaxReadThrough="1.78111"
                     /MaxDrop="4.66019"
                     /score="-8.79921781"
                     /energy="-7.5"
                     /TU="NA"
                     /idTUdmin="U786"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1044247..1044432)
                     /gene="yhzD"
                     /locus_tag="BSU_09889"
                     /old_locus_tag="BSU09889"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097698.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09889"
                     /db_xref="EnsemblGenomes-Tr:CAX52586"
                     /db_xref="InterPro:IPR025544"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y1"
                     /translation="MADYFLTVFDPSGNTLVNEQFEAEHEEAAKTHGEALLKEKELHS
                     HTHRLVNAAGKLILFHR*"
     gene            complement(1044247..1044432)
                     /gene="yhzD"
                     /locus_tag="BSU_09889"
                     /old_locus_tag="BSU09889"
     promotor_-10    complement(1044468..1044486)
                     /Source="Nicolas_upshift_promotors"
                     /id="U787"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.637362637362637"
                     /psig="0.637362637362637"
                     /xcortree=957
                     /SigmaFactorBS="acccattatatactaattttggataaagcataatAAAGGATT
                     TtgatttccttTTTAGAATATAAATGAAGAaagactgataaaccttaaaatggaggag
                     a"
                     /listShort="yhzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1044479)
                     /Source="Nicolas_upshifts"
                     /id="U787"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.637362637362637"
                     /psig="0.637362637362637"
                     /xcortree=957
                     /SigmaFactorBS="acccattatatactaattttggataaagcataatAAAGGATT
                     TtgatttccttTTTAGAATATAAATGAAGAaagactgataaaccttaaaatggaggag
                     a"
                     /listShort="yhzD"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1044497..1044505)
                     /Source="Nicolas_upshift_promotors"
                     /id="U787"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.637362637362637"
                     /psig="0.637362637362637"
                     /xcortree=957
                     /SigmaFactorBS="acccattatatactaattttggataaagcataatAAAGGATT
                     TtgatttccttTTTAGAATATAAATGAAGAaagactgataaaccttaaaatggaggag
                     a"
                     /listShort="yhzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1044506..1044509
                     /Source="Nicolas_upshift_promotors"
                     /id="U788"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.797202797202797"
                     /psig="0.974025974025974"
                     /xcortree=2418
                     /SigmaFactorBS="tttatattctaaaaaggaaatcaaaatcctttATTAtgcttt
                     atccaaaaTTAGTATATAATGGGTCAGGgaaggaggagattcagtgcttacaattgat
                     c"
                     /listShort="natA, natB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1044524..1044543
                     /Source="Nicolas_upshift_promotors"
                     /id="U788"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.797202797202797"
                     /psig="0.974025974025974"
                     /xcortree=2418
                     /SigmaFactorBS="tttatattctaaaaaggaaatcaaaatcctttATTAtgcttt
                     atccaaaaTTAGTATATAATGGGTCAGGgaaggaggagattcagtgcttacaattgat
                     c"
                     /listShort="natA, natB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1044534
                     /Source="Nicolas_upshifts"
                     /id="U788"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.797202797202797"
                     /psig="0.974025974025974"
                     /xcortree=2418
                     /SigmaFactorBS="tttatattctaaaaaggaaatcaaaatcctttATTAtgcttt
                     atccaaaaTTAGTATATAATGGGTCAGGgaaggaggagattcagtgcttacaattgat
                     c"
                     /listShort="natA, natB"
                     /GFF_Attribute="listLong"
     CDS             1044559..1045455
                     /gene="yhaQ"
                     /locus_tag="BSU_09890"
                     /old_locus_tag="BSU09890"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9106203, 10356997, 12374817;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+-dependent efflux ABC transporter
                     (ATP-binding protein)"
                     /protein_id="NP_388870.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09890"
                     /db_xref="EnsemblGenomes-Tr:CAB12829"
                     /db_xref="GOA:C0SPB4"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR025302"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12993"
                     /db_xref="UniProtKB/Swiss-Prot:C0SPB4"
                     /translation="MLTIDHVTKTFGDYKAVDGLDLDIPEQQMFGLLGANGAGKTTTF
                     RMILGLLSITEGSISWKGRPVNYHISNKIGYLPEERGLYPKMKVRDQLVYLARLKGME
                     KREAVKELGTWLERFNITDYENKKVEELSKGNQQKIQFISAVLHKPELLILDEPFSGL
                     DPVNVELLKEAVISLKNSGVSILFSSHRMEHVEELCENLCILQKGKPVVQGKLKEIKR
                     SFGKKNVTIHSDDDLRFLQSHEGILQWKETADGVKLQIANEDISQEIFAMLQGKGFIR
                     KFELEEPSLHDIFIEKVGAVYE*"
     gene            1044559..1045455
                     /gene="yhaQ"
                     /locus_tag="BSU_09890"
                     /old_locus_tag="BSU09890"
     CDS             1045448..1046707
                     /gene="yhaP"
                     /locus_tag="BSU_09900"
                     /old_locus_tag="BSU09900"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9106203, 10356997, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+-dependent exporter (ABC permease)"
                     /protein_id="NP_388871.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09900"
                     /db_xref="EnsemblGenomes-Tr:CAB12830"
                     /db_xref="GOA:O07523"
                     /db_xref="SubtiList:BG12992"
                     /db_xref="UniProtKB/Swiss-Prot:O07523"
                     /translation="MNKFWIMLSHTYKNKIMAKSFIISTVITVLLVLVVTNLESIISL
                     FQGDDAKEKIAVVDETNELYPVFSKQLKAVDTDGDLDVKLSKQSEDEVTKQVKDESLD
                     GMLIIKRDEKGTISGTYKALTISDESTYQTLQQALTQTKTAVGTAELGVSQETISSLY
                     APVTVGQKALKEGAKSEEELGQTVGLVYIMLFVIYFSVIMYASMIAMEVATEKSSRVM
                     EILISSMPPIQQMFAKLLGIGLVGITQLAIIIGAGSLSLKLNQKSETASSVGGFLNLT
                     DVSATTVIYAVIFFLLGYFLYATLAAFLGSVVSRIEDVQQTITPMTLLVVAGFMIAMF
                     GLNAPDAGFITVTSFIPFFTPMIMFLRVGMLDIPFWQAAVGIGITLLTIVILAVIGAR
                     IYKGGVLIYGNSSAFKAIKQALRLAKN*"
     gene            1045448..1046707
                     /gene="yhaP"
                     /locus_tag="BSU_09900"
                     /old_locus_tag="BSU09900"
     downshifts      1046691
                     /Source="Nicolas_upshifts"
                     /id="D530"
                     /incds=0
                     /nref=19
                     /ntot=187
                     /MaxReadThrough="2.50232"
                     /MaxDrop="3.26822"
                     /score="8.93460501"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U788"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1046755..1046762
                     /Source="Nicolas_upshift_promotors"
                     /id="U789"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.998001998001998"
                     /xcortree=2088
                     /SigmaFactorBS="cctggggattctcaggctgtttctttattgacagaaCGTGCA
                     TTcgcaagaattcGGTGCTAAAATAAGGGTACTtcatcctggaaaggagcagaatgtt
                     g"
                     /listShort="yhaO, yhaN, yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1046774..1046793
                     /Source="Nicolas_upshift_promotors"
                     /id="U789"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.998001998001998"
                     /xcortree=2088
                     /SigmaFactorBS="cctggggattctcaggctgtttctttattgacagaaCGTGCA
                     TTcgcaagaattcGGTGCTAAAATAAGGGTACTtcatcctggaaaggagcagaatgtt
                     g"
                     /listShort="yhaO, yhaN, yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1046779
                     /Source="Nicolas_upshifts"
                     /id="U789"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.998001998001998"
                     /xcortree=2088
                     /SigmaFactorBS="cctggggattctcaggctgtttctttattgacagaaCGTGCA
                     TTcgcaagaattcGGTGCTAAAATAAGGGTACTtcatcctggaaaggagcagaatgtt
                     g"
                     /listShort="yhaO, yhaN, yhaM"
                     /GFF_Attribute="listLong"
     CDS             1046814..1048040
                     /gene="yhaO"
                     /locus_tag="BSU_09910"
                     /old_locus_tag="BSU09910"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16267290; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA repair exonuclease"
                     /protein_id="NP_388872.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09910"
                     /db_xref="EnsemblGenomes-Tr:CAB12831"
                     /db_xref="GOA:O07522"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR014576"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="SubtiList:BG12991"
                     /db_xref="UniProtKB/Swiss-Prot:O07522"
                     /translation="MLTDLTFIHAADLHLDSPFYGISHLPEPIFARIKESTFASVRHM
                     IDAAVREHVDFILLAGDLFDEANRSLKAQLFLKKQFERLRECGISVYVIFGNHDHLGG
                     EWTPIEWPENVHIFSSAVPEEKSFFKEGRRIASIYGFSYQARALMENQAARYRRSTDA
                     PFHIGMLHGTLSGSEGHDPYCPFTHDDLVKSGMDYWALGHIHKRQVLSAEHPAVIYPG
                     NTQARHIKETGDKGYYLVHVTNGDISYEFQRAHDVLWEKAAVDVTEAKNMTALFQMVE
                     DTFSKLRKKGSPVCVRLVLQGTAPEWLLEAPKGTLDEFLEALQEQEAEEERFVWPLRL
                     DDETENEANLTNLDPFFGGLFEDIDRSDLSDVLEGLERHPVYRRHADRFSQEEVKEIK
                     EQAQIILKRQLKVLDT*"
     gene            1046814..1048040
                     /gene="yhaO"
                     /locus_tag="BSU_09910"
                     /old_locus_tag="BSU09910"
     downshifts      complement(1047515)
                     /Source="Nicolas_upshifts"
                     /id="D531"
                     /incds=1
                     /nref=1
                     /ntot=20
                     /MaxReadThrough="0.0165100000000002"
                     /MaxDrop="3.62411"
                     /score="-5.83060322"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U787"
                     /TUdmin="-3300"
                     /isTUend="FALSE"
     CDS             1048045..1050936
                     /gene="sbcE"
                     /locus_tag="BSU_09920"
                     /old_locus_tag="BSU09920"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16267290, 19906728, 21517913"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16267290, 19906728,
                     21517913; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase involved in DNA double strand break
                     repair and recombination"
                     /protein_id="NP_388873.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09920"
                     /db_xref="EnsemblGenomes-Tr:CAB12832"
                     /db_xref="GOA:O08455"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG12990"
                     /db_xref="UniProtKB/Swiss-Prot:O08455"
                     /translation="MTALRIISLHIYQYGKFSNRTFDFSASPVQVIYGLNEAGKTTMM
                     SFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYGVLKIERTKGTAEKLSVYTEKGE
                     VKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
                     LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEA
                     RLAAAETELKETAGHIRMIEGAIERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLE
                     KYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQELSAAFHMYQSWGE
                     QLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRK
                     RQLDETFELARQELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQAKLR
                     EQLTFFERQQAKQKKTVIAAGMLFIVLFSLLQQWIPAISFGAALIVYWLVSGKSSSRN
                     SRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQQFEQWE
                     AEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRR
                     TFEERVSMLLPVNQSQDISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLEL
                     EQEIQYFHAQIEQLFAAAAAKDRDAFFAIAAISRQLKDTENKLHHVNAQLQGGYPEEL
                     ELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGMVSDLKLQ
                     TEMQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQT
                     IYFSETDDSIMVMHRDGTVYHAEELSQGTCEQLYTAIRFALAVTRQGESKLPFQLDDS
                     FVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHSSQIIHLVS*"
     gene            1048045..1050936
                     /gene="sbcE"
                     /locus_tag="BSU_09920"
                     /old_locus_tag="BSU09920"
     promotor_-35    1049326..1049331
                     /Source="Nicolas_upshift_promotors"
                     /id="U790"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=796
                     /SigmaFactorBS="tcgtccgcgattcttgaaaacagccaaagaaaaGATAAAgaa
                     gcagctcttagaGCATATGATGAAACACAGGggcagcaccaagagcaagcgaagctca
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1049347..1049365
                     /Source="Nicolas_upshift_promotors"
                     /id="U790"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=796
                     /SigmaFactorBS="tcgtccgcgattcttgaaaacagccaaagaaaaGATAAAgaa
                     gcagctcttagaGCATATGATGAAACACAGGggcagcaccaagagcaagcgaagctca
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1049353
                     /Source="Nicolas_upshifts"
                     /id="U790"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.983016983016983"
                     /psig="0.983016983016983"
                     /xcortree=796
                     /SigmaFactorBS="tcgtccgcgattcttgaaaacagccaaagaaaaGATAAAgaa
                     gcagctcttagaGCATATGATGAAACACAGGggcagcaccaagagcaagcgaagctca
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
     promotor_-35    1050944..1050949
                     /Source="Nicolas_upshift_promotors"
                     /id="U791"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.420579420579421"
                     /psig="0.998001998001998"
                     /xcortree=2174
                     /SigmaFactorBS="atccatttggtgtcataaaagaggtTCTATAgctgaaaatcg
                     gtaTGTGATATACTGGTATTATGtaagatacggagggagctttaatagaatggctaaa
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1050964..1050983
                     /Source="Nicolas_upshift_promotors"
                     /id="U791"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.420579420579421"
                     /psig="0.998001998001998"
                     /xcortree=2174
                     /SigmaFactorBS="atccatttggtgtcataaaagaggtTCTATAgctgaaaatcg
                     gtaTGTGATATACTGGTATTATGtaagatacggagggagctttaatagaatggctaaa
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1050979
                     /Source="Nicolas_upshifts"
                     /id="U791"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.420579420579421"
                     /psig="0.998001998001998"
                     /xcortree=2174
                     /SigmaFactorBS="atccatttggtgtcataaaagaggtTCTATAgctgaaaatcg
                     gtaTGTGATATACTGGTATTATGtaagatacggagggagctttaatagaatggctaaa
                     g"
                     /listShort="yhaM"
                     /GFF_Attribute="listLong"
     CDS             1051010..1051954
                     /gene="yhaM"
                     /locus_tag="BSU_09930"
                     /old_locus_tag="BSU09930"
                     /EC_number="3.1.-.-"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12399495, 15805522, 15983136, 16267290, 19553197,
                     19880604"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12399495, 15805522,
                     15983136, 16267290, 19553197, 19880604; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="NP_388874.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09930"
                     /db_xref="EnsemblGenomes-Tr:CAB12833"
                     /db_xref="GOA:O07521"
                     /db_xref="InterPro:IPR003607"
                     /db_xref="InterPro:IPR006674"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR020873"
                     /db_xref="SubtiList:BG12989"
                     /db_xref="UniProtKB/Swiss-Prot:O07521"
                     /translation="MAKGIMLHEVGEQVDQYLLIKSSTKGIASNGKPFLTLMLQDQSG
                     DIEAKLWDAKQSDEVTYAPQTIVKVVGDVHHYRGRTQLKLRNIRPVSEQENVNIDDFL
                     ETAPIPKNEMMDTITQYIFEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEFVSGL
                     AYHVVSMLNLAKAIADLYPSLDRDLLYAGVILHDLGKVKELSGPVSTSYTVEGNLLGH
                     ISIMVTELSKAAEELQIDSEEVLILQHLILSHHGKAEWGSPKPPMVKEAEILHYIDNL
                     DAKMNMMDRALERVKPGEYTERVFALENRSFYKPTFHK*"
     gene            1051010..1051954
                     /gene="yhaM"
                     /locus_tag="BSU_09930"
                     /old_locus_tag="BSU09930"
     downshifts      1051932
                     /Source="Nicolas_upshifts"
                     /id="D532"
                     /incds=0
                     /nref=183
                     /ntot=261
                     /MaxReadThrough="3.02818"
                     /MaxDrop="5.88173"
                     /score="6.06919899"
                     /energy="-15.8"
                     /TU="NA"
                     /idTUdmin="U789"
                     /TUdmin=5
                     /isTUend="TRUE"
     promotor_-35    1052013..1052018
                     /Source="Nicolas_upshift_promotors"
                     /id="U792"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1159
                     /SigmaFactorBS="atattcagctcagtcctttttgatgcgtctttcccgCACATA
                     actcgtctcattcccGCATATGGTTAAGAATAAAgaatctatgcaaagggggaggagc
                     c"
                     /listShort="yhaL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1052034..1052052
                     /Source="Nicolas_upshift_promotors"
                     /id="U792"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1159
                     /SigmaFactorBS="atattcagctcagtcctttttgatgcgtctttcccgCACATA
                     actcgtctcattcccGCATATGGTTAAGAATAAAgaatctatgcaaagggggaggagc
                     c"
                     /listShort="yhaL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1052037
                     /Source="Nicolas_upshifts"
                     /id="U792"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1159
                     /SigmaFactorBS="atattcagctcagtcctttttgatgcgtctttcccgCACATA
                     actcgtctcattcccGCATATGGTTAAGAATAAAgaatctatgcaaagggggaggagc
                     c"
                     /listShort="yhaL"
                     /GFF_Attribute="listLong"
     CDS             1052079..1052291
                     /gene="yhaL"
                     /locus_tag="BSU_09940"
                     /old_locus_tag="BSU09940"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:14523133"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14523133; Product type
                     ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation factor"
                     /protein_id="NP_388875.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09940"
                     /db_xref="EnsemblGenomes-Tr:CAB12834"
                     /db_xref="GOA:O07520"
                     /db_xref="InterPro:IPR025428"
                     /db_xref="SubtiList:BG12988"
                     /db_xref="UniProtKB/Swiss-Prot:O07520"
                     /translation="MLFFPWWVYLCIVGIIFSAYKLVAAAKEEEKVDQAFIEKEGQIY
                     MERMEKERERRSSQQHEEENQNHSIA*"
     gene            1052079..1052291
                     /gene="yhaL"
                     /locus_tag="BSU_09940"
                     /old_locus_tag="BSU09940"
     downshifts      1052284
                     /Source="Nicolas_upshifts"
                     /id="D533"
                     /incds=0
                     /nref=8
                     /ntot=158
                     /MaxReadThrough="2.03283"
                     /MaxDrop="6.60832"
                     /score="62.1892984"
                     /energy="-22"
                     /TU="NA"
                     /idTUdmin="U792"
                     /TUdmin=5
                     /isTUend="TRUE"
     downshifts      complement(1052322)
                     /Source="Nicolas_upshifts"
                     /id="D534"
                     /incds=0
                     /nref=97
                     /ntot=260
                     /MaxReadThrough="0.90997"
                     /MaxDrop="9.00938"
                     /score="52.3375501"
                     /energy="-22"
                     /TU="NA"
                     /idTUdmin="U793"
                     /TUdmin=11
                     /isTUend="TRUE"
     CDS             complement(1052332..1053210)
                     /gene="prsA"
                     /locus_tag="BSU_09950"
                     /old_locus_tag="BSU09950"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12634326, 12682299, 14976191, 16516208, 25525259,
                     26711778"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12634326, 12682299,
                     14976191, 16516208, 25525259, 26711778; Product type lp :
                     lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone lipoprotein"
                     /protein_id="NP_388876.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09950"
                     /db_xref="EnsemblGenomes-Tr:CAB12835"
                     /db_xref="GOA:P24327"
                     /db_xref="InterPro:IPR000297"
                     /db_xref="InterPro:IPR008880"
                     /db_xref="InterPro:IPR023058"
                     /db_xref="InterPro:IPR023059"
                     /db_xref="InterPro:IPR027304"
                     /db_xref="PDB:1ZK6"
                     /db_xref="PDB:4WO7"
                     /db_xref="SubtiList:BG10464"
                     /db_xref="UniProtKB/Swiss-Prot:P24327"
                     /translation="MKKIAIAAITATSILALSACSSGDKEVIAKTDAGDVTKGELYTN
                     MKKTAGASVLTQLVQEKVLDKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDYLK
                     EQVKYELLTQKAAKDNIKVTDADIKEYWEGLKGKIRASHILVADKKTAEEVEKKLKKG
                     EKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYH
                     IIKKTEERGKYDDMKKELKSEVLEQKLNDNAAVQEAVQKVMKKADIEVKDKDLKDTFN
                     TSSTSNSTSSSSSNSK*"
     gene            complement(1052332..1053210)
                     /gene="prsA"
                     /locus_tag="BSU_09950"
                     /old_locus_tag="BSU09950"
     downshifts      complement(1052520)
                     /Source="Nicolas_upshifts"
                     /id="D535"
                     /incds=1
                     /nref=10
                     /ntot=127
                     /MaxReadThrough="7.54458"
                     /MaxDrop="3.5906"
                     /score="52.3375501"
                     /energy="-22"
                     /TU="U793"
                     /idTUdmin="U793"
                     /TUdmin="-187"
                     /isTUend="FALSE"
     promotor_-10    complement(1053248..1053267)
                     /Source="Nicolas_upshift_promotors"
                     /id="U793"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.565434565434565"
                     /psig="0.996003996003996"
                     /xcortree=1995
                     /SigmaFactorBS="gtcatcagcaaaagtttgactagacgaatgccctttatttaa
                     aaTCTTTTTAcagaaagccacaaTATGTTATGATACGCATAGGtaatttaatttggaa
                     t"
                     /listShort="prsA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1053272)
                     /Source="Nicolas_upshifts"
                     /id="U793"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.565434565434565"
                     /psig="0.996003996003996"
                     /xcortree=1995
                     /SigmaFactorBS="gtcatcagcaaaagtttgactagacgaatgccctttatttaa
                     aaTCTTTTTAcagaaagccacaaTATGTTATGATACGCATAGGtaatttaatttggaa
                     t"
                     /listShort="prsA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1053281..1053288)
                     /Source="Nicolas_upshift_promotors"
                     /id="U793"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.565434565434565"
                     /psig="0.996003996003996"
                     /xcortree=1995
                     /SigmaFactorBS="gtcatcagcaaaagtttgactagacgaatgccctttatttaa
                     aaTCTTTTTAcagaaagccacaaTATGTTATGATACGCATAGGtaatttaatttggaa
                     t"
                     /listShort="prsA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1053308..1053317
                     /Source="Nicolas_upshift_promotors"
                     /id="U794"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1349
                     /SigmaFactorBS="tgtggctttctgtaaaaagattttaaataaagggcattcGTC
                     TAGTCAAacttttgctgatGACATACTTATATATTGATCaagaaaaggaggtatgtaa
                     c"
                     /listShort="yhzE, S347, S349"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1053329
                     /Source="Nicolas_upshifts"
                     /id="U794"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1349
                     /SigmaFactorBS="tgtggctttctgtaaaaagattttaaataaagggcattcGTC
                     TAGTCAAacttttgctgatGACATACTTATATATTGATCaagaaaaggaggtatgtaa
                     c"
                     /listShort="yhzE, S347, S349"
                     /GFF_Attribute="listLong"
     promotor_-10    1053330..1053349
                     /Source="Nicolas_upshift_promotors"
                     /id="U794"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1349
                     /SigmaFactorBS="tgtggctttctgtaaaaagattttaaataaagggcattcGTC
                     TAGTCAAacttttgctgatGACATACTTATATATTGATCaagaaaaggaggtatgtaa
                     c"
                     /listShort="yhzE, S347, S349"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(1053366..1053380)
                     /Source="Nicolas_upshift_promotors"
                     /id="U795"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=700
                     /SigmaFactorBS="taagcaaaatgaacagtactacgagcaacgcgaaTCCGTtag
                     agtatCCTCCGCTCATGTTAcatacctccttttcttgatcaatatataagtatgtcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1053367)
                     /Source="Nicolas_upshifts"
                     /id="U795"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=700
                     /SigmaFactorBS="taagcaaaatgaacagtactacgagcaacgcgaaTCCGTtag
                     agtatCCTCCGCTCATGTTAcatacctccttttcttgatcaatatataagtatgtcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             1053370..1053456
                     /gene="sscA"
                     /locus_tag="BSU_09958"
                     /old_locus_tag="BSU09958"
                     /function="15.7: Sporulation and germination"
                     /experiment="publication(s) with functional evidences,
                     PMID:20156992, 21670523"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20156992, 21670523;
                     Product type ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="spore assembly and germination protein"
                     /protein_id="YP_003097699.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09958"
                     /db_xref="EnsemblGenomes-Tr:CAX52587"
                     /db_xref="GOA:C0H3Y2"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y2"
                     /translation="MSGGYSNGFALLVVLFILLIIVGAAYIY*"
     gene            1053370..1053456
                     /gene="sscA"
                     /locus_tag="BSU_09958"
                     /old_locus_tag="BSU09958"
     promotor_-35    complement(1053389..1053393)
                     /Source="Nicolas_upshift_promotors"
                     /id="U795"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=700
                     /SigmaFactorBS="taagcaaaatgaacagtactacgagcaacgcgaaTCCGTtag
                     agtatCCTCCGCTCATGTTAcatacctccttttcttgatcaatatataagtatgtcat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1053457..1053708
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1071489_1071740"
                     /HighExp="S8, S7, S6, BT, G/S, B36, Pyr, S5, B60, Glucon"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba=1
                     /TUshortSig="SigK"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S347"
     CDS             1053581..1053667
                     /gene="sscB"
                     /locus_tag="BSU_09959"
                     /old_locus_tag="BSU09959"
                     /function="15.7: Sporulation and germination"
                     /experiment="publication(s) with functional evidences,
                     PMID:21670523"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21670523; Product type f:
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="spore and germination protein"
                     /protein_id="YP_009513948.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09959"
                     /db_xref="EnsemblGenomes-Tr:CCQ48595"
                     /db_xref="GOA:L8EBJ6"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/TrEMBL:L8EBJ6"
                     /translation="MGEVFAGGFALLVVLFILLIIIGASWLY*"
     gene            1053581..1053667
                     /gene="sscB"
                     /locus_tag="BSU_09959"
                     /old_locus_tag="BSU09959"
     downshifts      1053665
                     /Source="Nicolas_upshifts"
                     /id="D536"
                     /incds=0
                     /nref=28
                     /ntot=50
                     /MaxReadThrough="4.67734"
                     /MaxDrop="4.7906"
                     /score="14.3797211"
                     /energy="-17.6"
                     /TU="U794"
                     /idTUdmin="U794"
                     /TUdmin="-506"
                     /isTUend="FALSE"
     S_feature       complement(1053677..1053939)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1071709_1071971_c"
                     /HighExp="LBGtran, LBGstat, LPhT, LBGexp, HPh, dia15,
                     T0.30H, dia0, G180, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.999, 0.995"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.989"
                     /label="S348"
     S_feature       1053710..1054193
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1071742_1072225"
                     /HighExp="S8, S6, S7, BT, C30, S5, Pyr, Glucon, G/S, C90"
                     /AntisenseName="yhaJ"
                     /AntisenseCor="-0.22462434208606599"
                     /AntisenseRegPval="-3.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S349"
     downshifts      complement(1053720)
                     /Source="Nicolas_upshifts"
                     /id="D537"
                     /incds=0
                     /nref=153
                     /ntot=265
                     /MaxReadThrough="1.32339"
                     /MaxDrop="6.55635"
                     /score="34.7913848"
                     /energy="-17.6"
                     /TU="NA"
                     /idTUdmin="U796"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     promotor_-10    complement(1053932..1053951)
                     /Source="Nicolas_upshift_promotors"
                     /id="U796"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.58041958041958"
                     /psig="0.999000999001"
                     /xcortree=2759
                     /SigmaFactorBS="gtgctggtggcgatttttcaatttgcattCTATCTtttttaa
                     taaataTTTGGTAATGTAATATGGGAcagttcagagagagggggaatctcccatcatt
                     t"
                     /listShort="S348"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1053939)
                     /Source="Nicolas_upshifts"
                     /id="U796"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.58041958041958"
                     /psig="0.999000999001"
                     /xcortree=2759
                     /SigmaFactorBS="gtgctggtggcgatttttcaatttgcattCTATCTtttttaa
                     taaataTTTGGTAATGTAATATGGGAcagttcagagagagggggaatctcccatcatt
                     t"
                     /listShort="S348"
                     /GFF_Attribute="listLong"
     S_feature       complement(1053941..1054009)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1071973_1072041_c"
                     /HighExp="Paraq, G180, C30, LBGexp, Oxctl, G135, Lbexp,
                     Heat, G150, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.29568499999999998"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.995"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.989"
                     /label="S350"
     promotor_-35    complement(1053965..1053970)
                     /Source="Nicolas_upshift_promotors"
                     /id="U796"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.58041958041958"
                     /psig="0.999000999001"
                     /xcortree=2759
                     /SigmaFactorBS="gtgctggtggcgatttttcaatttgcattCTATCTtttttaa
                     taaataTTTGGTAATGTAATATGGGAcagttcagagagagggggaatctcccatcatt
                     t"
                     /listShort="S348"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1054010..1054528)
                     /gene="yhaJ"
                     /locus_tag="BSU_09965"
                     /old_locus_tag="BSU09965"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16845009, 21670523,
                     25651892; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane enzyme"
                     /protein_id="NP_388878.2"
                     /db_xref="EnsemblGenomes-Gn:BSU09965"
                     /db_xref="EnsemblGenomes-Tr:CAB12837"
                     /db_xref="GOA:O07518"
                     /db_xref="InterPro:IPR021683"
                     /db_xref="SubtiList:BG12986"
                     /db_xref="UniProtKB/Swiss-Prot:O07518"
                     /translation="MNCWKTINLMKDYGAVRIILTAVCFMILVFISTFLAFELLRPGT
                     SLSDEYVSLFGGLLVVILFVHKVIHVLPIICKKRKIEKKFYILRMRTWKRIPKTTMLI
                     SLVSPFLLITPVLFYAALAFPNHAHYFCMISGIHAGYCLPDFLLALKLIKAPKTAFID
                     QEADGLDILVEK*"
     gene            complement(1054010..1054528)
                     /gene="yhaJ"
                     /locus_tag="BSU_09965"
                     /old_locus_tag="BSU09965"
     promotor_-35    1054315..1054323
                     /Source="Nicolas_upshift_promotors"
                     /id="U797"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=540
                     /SigmaFactorBS="ctatttttctttttttgcagatgattgGCAGGACATggatga
                     ctttaTGTACAAATAAAATAACGAcgagcaaaccgccgaataaagatacatattcatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1054335..1054353
                     /Source="Nicolas_upshift_promotors"
                     /id="U797"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=540
                     /SigmaFactorBS="ctatttttctttttttgcagatgattgGCAGGACATggatga
                     ctttaTGTACAAATAAAATAACGAcgagcaaaccgccgaataaagatacatattcatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1054348
                     /Source="Nicolas_upshifts"
                     /id="U797"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=540
                     /SigmaFactorBS="ctatttttctttttttgcagatgattgGCAGGACATggatga
                     ctttaTGTACAAATAAAATAACGAcgagcaaaccgccgaataaagatacatattcatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1054559..1054578)
                     /Source="Nicolas_upshift_promotors"
                     /id="U798"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.44955044955045"
                     /psig="0.995004995004995"
                     /xcortree=2615
                     /SigmaFactorBS="aaaaatacctgccggatgatattttttcttaaaaaagCATTG
                     ATtttttctcttgggagGAGTAAATTATTTTGAGATTctattcaagatgtatggaagg
                     a"
                     /listShort="yhaJ, S350, S348"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1054577)
                     /Source="Nicolas_upshifts"
                     /id="U798"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.44955044955045"
                     /psig="0.995004995004995"
                     /xcortree=2615
                     /SigmaFactorBS="aaaaatacctgccggatgatattttttcttaaaaaagCATTG
                     ATtttttctcttgggagGAGTAAATTATTTTGAGATTctattcaagatgtatggaagg
                     a"
                     /listShort="yhaJ, S350, S348"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1054594..1054600)
                     /Source="Nicolas_upshift_promotors"
                     /id="U798"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.44955044955045"
                     /psig="0.995004995004995"
                     /xcortree=2615
                     /SigmaFactorBS="aaaaatacctgccggatgatattttttcttaaaaaagCATTG
                     ATtttttctcttgggagGAGTAAATTATTTTGAGATTctattcaagatgtatggaagg
                     a"
                     /listShort="yhaJ, S350, S348"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1054677..1054680
                     /Source="Nicolas_upshift_promotors"
                     /id="U799"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig="0.999000999001"
                     /xcortree=2221
                     /SigmaFactorBS="gaaacaagcaaacaaactgcgaaatatggggttagaaCTTTc
                     ttctcagtgaattATCAGCTAAAATAAGATTAAagatagaaagaagtggtgtggatgg
                     a"
                     /listShort="yhaI, S352"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1054695..1054714
                     /Source="Nicolas_upshift_promotors"
                     /id="U799"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig="0.999000999001"
                     /xcortree=2221
                     /SigmaFactorBS="gaaacaagcaaacaaactgcgaaatatggggttagaaCTTTc
                     ttctcagtgaattATCAGCTAAAATAAGATTAAagatagaaagaagtggtgtggatgg
                     a"
                     /listShort="yhaI, S352"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1054700
                     /Source="Nicolas_upshifts"
                     /id="U799"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.671328671328671"
                     /psig="0.999000999001"
                     /xcortree=2221
                     /SigmaFactorBS="gaaacaagcaaacaaactgcgaaatatggggttagaaCTTTc
                     ttctcagtgaattATCAGCTAAAATAAGATTAAagatagaaagaagtggtgtggatgg
                     a"
                     /listShort="yhaI, S352"
                     /GFF_Attribute="listLong"
     CDS             1054736..1055077
                     /gene="yhaI"
                     /locus_tag="BSU_09980"
                     /old_locus_tag="BSU09980"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388879.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09980"
                     /db_xref="EnsemblGenomes-Tr:CAB12838"
                     /db_xref="InterPro:IPR015058"
                     /db_xref="InterPro:IPR035945"
                     /db_xref="PDB:1SED"
                     /db_xref="SubtiList:BG12985"
                     /db_xref="UniProtKB/Swiss-Prot:O07517"
                     /translation="MDSMDHRIERLEYYIQLLVKTVDMDRYPFYALLIDKGLSKEEGE
                     AVMRICDELSEELATQKAQGFVTFDKLLALFAGQLNEKLDVHETIFALYEQGLYQELM
                     EVFIDIMKHFD*"
     gene            1054736..1055077
                     /gene="yhaI"
                     /locus_tag="BSU_09980"
                     /old_locus_tag="BSU09980"
     S_feature       complement(1054931..1055073)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1072963_1073105_c"
                     /HighExp="BC, S1, Sw, S2, S3, S8, S5, S4, S6, S7"
                     /AntisenseName="yhaI"
                     /AntisenseCor="5.4889858269512502E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.989"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S351"
     downshifts      complement(1054974)
                     /Source="Nicolas_upshifts"
                     /id="D538"
                     /incds=1
                     /nref=39
                     /ntot=209
                     /MaxReadThrough="2.89899"
                     /MaxDrop="4.77791"
                     /score="-6.0983333"
                     /energy="-12.3"
                     /TU="U801"
                     /idTUdmin="U801"
                     /TUdmin="-374"
                     /isTUend="FALSE"
     CDS             complement(1055074..1055685)
                     /gene="scoC"
                     /locus_tag="BSU_09990"
                     /old_locus_tag="BSU09990"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14629015, 15126467, 16321961, 16923912, 19801406,
                     20382764, 23660663, 25966844, 26473603, 26728191,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14629015, 15126467,
                     16321961, 16923912, 19801406, 20382764, 23660663,
                     25966844, 26473603, 26728191, 22720735; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of extracellular
                     protease production, sporulation and bacilysin production
                     (MarR family)"
                     /protein_id="NP_388880.1"
                     /db_xref="EnsemblGenomes-Gn:BSU09990"
                     /db_xref="EnsemblGenomes-Tr:CAB12839"
                     /db_xref="GOA:P11065"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR023488"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2FXA"
                     /db_xref="SubtiList:BG10659"
                     /db_xref="UniProtKB/Swiss-Prot:P11065"
                     /translation="MNRVEPPYDVKEALVFTQKMAQLSKALWKSIEKDWQQWLKPYDL
                     NINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNT
                     YVQLTEEGTEVFWSLLEEFDPTRNAVFKGSQPLYHLFGKFPEVAEMMCMIRHIYGDDF
                     MEIFETSLTNIDNDFESVNGKLKKKAKDSAADEPAEELEPVNS*"
     gene            complement(1055074..1055685)
                     /gene="scoC"
                     /locus_tag="BSU_09990"
                     /old_locus_tag="BSU09990"
     S_feature       1055078..1055843
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1073110_1073875"
                     /HighExp="Lbstat, Etha, T0.30H, Gly, M0t90, M40t90,
                     M40t45, M0t45, H2O2, dia15"
                     /AntisenseName="scoC"
                     /AntisenseCor="-0.46322626361720198"
                     /AntisenseRegPval="-15"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S352"
     downshifts      complement(1055150)
                     /Source="Nicolas_upshifts"
                     /id="D539"
                     /incds=1
                     /nref=1
                     /ntot=81
                     /MaxReadThrough="5.81117"
                     /MaxDrop="2.1632"
                     /score="-6.0983333"
                     /energy="-12.3"
                     /TU="U801"
                     /idTUdmin="U801"
                     /TUdmin="-550"
                     /isTUend="FALSE"
     promotor_-35    1055681..1055685
                     /Source="Nicolas_upshift_promotors"
                     /id="U800"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.632367632367632"
                     /psig="0.177822177822178"
                     /xcortree=3100
                     /SigmaFactorBS="agagcttctttcacatcatagggcggttccactcgaTTCATt
                     acgtcaCCTGCTTCTCTTTTtctttttctctattatgccaataaaataaagattaata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1055693..1055706
                     /Source="Nicolas_upshift_promotors"
                     /id="U800"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.632367632367632"
                     /psig="0.177822177822178"
                     /xcortree=3100
                     /SigmaFactorBS="agagcttctttcacatcatagggcggttccactcgaTTCATt
                     acgtcaCCTGCTTCTCTTTTtctttttctctattatgccaataaaataaagattaata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1055705
                     /Source="Nicolas_upshifts"
                     /id="U800"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.632367632367632"
                     /psig="0.177822177822178"
                     /xcortree=3100
                     /SigmaFactorBS="agagcttctttcacatcatagggcggttccactcgaTTCATt
                     acgtcaCCTGCTTCTCTTTTtctttttctctattatgccaataaaataaagattaata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1055710..1055729)
                     /Source="Nicolas_upshift_promotors"
                     /id="U801"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.656343656343656"
                     /psig="0.98901098901099"
                     /xcortree=2944
                     /SigmaFactorBS="cgtcgcaatggtttgtgaatttattaaaaaattcttacattt
                     tcatCTTTattaatctttatttTATTGGCATAATAGAGAAAAagaaaaagagaagcag
                     g"
                     /listShort="scoC, S351"
                     /listLong="yhaJ, S350, S348"
                     /label="promotor_-10"
     upshifts        complement(1055733)
                     /Source="Nicolas_upshifts"
                     /id="U801"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.656343656343656"
                     /psig="0.98901098901099"
                     /xcortree=2944
                     /SigmaFactorBS="cgtcgcaatggtttgtgaatttattaaaaaattcttacattt
                     tcatCTTTattaatctttatttTATTGGCATAATAGAGAAAAagaaaaagagaagcag
                     g"
                     /listShort="scoC, S351"
                     /listLong="yhaJ, S350, S348"
     promotor_-35    complement(1055744..1055747)
                     /Source="Nicolas_upshift_promotors"
                     /id="U801"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.656343656343656"
                     /psig="0.98901098901099"
                     /xcortree=2944
                     /SigmaFactorBS="cgtcgcaatggtttgtgaatttattaaaaaattcttacattt
                     tcatCTTTattaatctttatttTATTGGCATAATAGAGAAAAagaaaaagagaagcag
                     g"
                     /listShort="scoC, S351"
                     /listLong="yhaJ, S350, S348"
                     /label="promotor_-35"
     downshifts      1055800
                     /Source="Nicolas_upshifts"
                     /id="D540"
                     /incds=0
                     /nref=1
                     /ntot=124
                     /MaxReadThrough="3.007"
                     /MaxDrop="2.86547"
                     /score="17.8486533"
                     /energy="-7.1"
                     /TU="U799,U800"
                     /idTUdmin="U799"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     CDS             complement(1055863..1056219)
                     /gene="yhaH"
                     /locus_tag="BSU_10000"
                     /old_locus_tag="BSU10000"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11429463; Product type
                     m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein; acid tolerance
                     protein"
                     /protein_id="NP_388881.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10000"
                     /db_xref="EnsemblGenomes-Tr:CAB12840"
                     /db_xref="GOA:O07516"
                     /db_xref="InterPro:IPR024623"
                     /db_xref="InterPro:IPR036191"
                     /db_xref="SubtiList:BG12984"
                     /db_xref="UniProtKB/Swiss-Prot:O07516"
                     /translation="MASGRSLLTGLFVGGIIGGAAVLLTAPSSGKQLREKMKTNYDSF
                     EETIKRLKSDGLALKDQLIKAAKESTDVIKDVGGELQTSIKKWQEEIKPHQQDLQKEI
                     ADIEEKIRQLEKTLQN*"
     gene            complement(1055863..1056219)
                     /gene="yhaH"
                     /locus_tag="BSU_10000"
                     /old_locus_tag="BSU10000"
     downshifts      complement(1055867)
                     /Source="Nicolas_upshifts"
                     /id="D541"
                     /incds=0
                     /nref=254
                     /ntot=287
                     /MaxReadThrough="1.65317"
                     /MaxDrop="7.37381"
                     /score="10.8990112"
                     /energy="-7.9"
                     /TU="NA"
                     /idTUdmin="U804"
                     /TUdmin=9
                     /isTUend="TRUE"
     promotor_-35    1056296..1056301
                     /Source="Nicolas_upshift_promotors"
                     /id="U803"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1168
                     /SigmaFactorBS="ttcagcatttttcatttttgttgaaagcctgaacttctaTAC
                     ATAgcttgctttattttaGCATATTTTTTAAGTGAAAaggagggagaaggttgtctgt
                     c"
                     /listShort="yhzF, S354"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(1056302..1056321)
                     /Source="Nicolas_upshift_promotors"
                     /id="U802"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1914
                     /SigmaFactorBS="aggataatacaatcaaaaagacagacaaccttctccctcctt
                     ttcacttaaaaaaTATGCTAAAATAAAGCAAGCtatgtatagaagttcaggctttcaa
                     c"
                     /listShort="yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1056316)
                     /Source="Nicolas_upshifts"
                     /id="U802"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.998001998001998"
                     /psig=1
                     /xcortree=1914
                     /SigmaFactorBS="aggataatacaatcaaaaagacagacaaccttctccctcctt
                     ttcacttaaaaaaTATGCTAAAATAAAGCAAGCtatgtatagaagttcaggctttcaa
                     c"
                     /listShort="yhaH"
                     /GFF_Attribute="listLong"
     promotor_-10    1056317..1056335
                     /Source="Nicolas_upshift_promotors"
                     /id="U803"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1168
                     /SigmaFactorBS="ttcagcatttttcatttttgttgaaagcctgaacttctaTAC
                     ATAgcttgctttattttaGCATATTTTTTAAGTGAAAaggagggagaaggttgtctgt
                     c"
                     /listShort="yhzF, S354"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1056317
                     /Source="Nicolas_upshifts"
                     /id="U803"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1168
                     /SigmaFactorBS="ttcagcatttttcatttttgttgaaagcctgaacttctaTAC
                     ATAgcttgctttattttaGCATATTTTTTAAGTGAAAaggagggagaaggttgtctgt
                     c"
                     /listShort="yhzF, S354"
                     /GFF_Attribute="listLong"
     S_feature       complement(1056318..1056581)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1074350_1074613_c"
                     /HighExp="Etha, Salt, HiTm, Heat, Diami, Sw, Gly, S1, MG
                     10, MG 60"
                     /AntisenseName="yhzF"
                     /AntisenseCor="-0.69425315975357205"
                     /AntisenseRegPval="-39.299999999999997"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="0.969, 0.962, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S353"
     CDS             1056349..1056540
                     /gene="yhzF"
                     /locus_tag="BSU_10009"
                     /old_locus_tag="BSU10009"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein of unknown function"
                     /protein_id="YP_003097700.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10009"
                     /db_xref="EnsemblGenomes-Tr:CAX52588"
                     /db_xref="GOA:C0H3Y3"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y3"
                     /translation="MSVFLIVLSCITLAFASGAVYYIKLLSQAASYPPKRVIRQKALV
                     CSTGTAFTLCLIFFTKLLA*"
     gene            1056349..1056540
                     /gene="yhzF"
                     /locus_tag="BSU_10009"
                     /old_locus_tag="BSU10009"
     S_feature       1056541..1057976
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1074573_1076008"
                     /HighExp="S3, S8, S4, S6, S7, T5.0H, C30, S5, T4.0H,
                     T3.30H"
                     /AntisenseName="trpP"
                     /AntisenseCor="-0.20038256384636899"
                     /AntisenseRegPval="-3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S354"
     CDS             complement(1056614..1057132)
                     /gene="trpP"
                     /locus_tag="BSU_10010"
                     /old_locus_tag="BSU10010"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10735881, 14702295, 15849754, 16850406, 16879415,
                     17114263"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10735881, 14702295,
                     15849754, 16850406, 16879415, 17114263; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan transporter or sensor"
                     /protein_id="NP_388882.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10010"
                     /db_xref="EnsemblGenomes-Tr:CAB12841"
                     /db_xref="GOA:O07515"
                     /db_xref="InterPro:IPR031360"
                     /db_xref="SubtiList:BG12983"
                     /db_xref="UniProtKB/Swiss-Prot:O07515"
                     /translation="MKTKELVIMALFAAIGAALHSIIPPFLGGMKPDMMLIMMFMGIL
                     LFPRVQNVLVIGIVTGIISALTTAFPAGQIPNIIDKPVSAFLFFSLFLLFRKSRKTGA
                     AAVLTVIGTILSGIVFLSSALLIVGLPGGFAALFAAVVLPAAVLNTISMIIIYPIVQT
                     ILRRSSFMEAAK*"
     gene            complement(1056614..1057132)
                     /gene="trpP"
                     /locus_tag="BSU_10010"
                     /old_locus_tag="BSU10010"
     downshifts      complement(1056626)
                     /Source="Nicolas_upshifts"
                     /id="D542"
                     /incds=0
                     /nref=105
                     /ntot=253
                     /MaxReadThrough="6.00956"
                     /MaxDrop="4.62812"
                     /score="24.5949542"
                     /energy="-12.8"
                     /TU="U804,U805,U806"
                     /idTUdmin="U804"
                     /TUdmin="-750"
                     /isTUend="FALSE"
     S_feature       complement(1057133..1057220)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1075165_1075252_c"
                     /HighExp="C90, B60, S1, GM 15, MG 45, MG-0.2, Etha,
                     Lbtran, MG 25, MG t5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA, SigA"
                     /TUshortPSig="0.969, 0.962, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S355"
     promotor_-10    complement(1057212..1057231)
                     /Source="Nicolas_upshift_promotors"
                     /id="U804"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.541458541458541"
                     /psig="0.969030969030969"
                     /xcortree=591
                     /SigmaFactorBS="aaattccagcaggaaaatgagtaaaaagTCTGGCTAtgcaaa
                     ccgtccgTTTGGTATACTGTTTGCATAacacattctgtaaagccttcgcaataaatga
                     t"
                     /listShort="S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1057220)
                     /Source="Nicolas_upshifts"
                     /id="U804"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.541458541458541"
                     /psig="0.969030969030969"
                     /xcortree=591
                     /SigmaFactorBS="aaattccagcaggaaaatgagtaaaaagTCTGGCTAtgcaaa
                     ccgtccgTTTGGTATACTGTTTGCATAacacattctgtaaagccttcgcaataaatga
                     t"
                     /listShort="S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1057245..1057252)
                     /Source="Nicolas_upshift_promotors"
                     /id="U804"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.541458541458541"
                     /psig="0.969030969030969"
                     /xcortree=591
                     /SigmaFactorBS="aaattccagcaggaaaatgagtaaaaagTCTGGCTAtgcaaa
                     ccgtccgTTTGGTATACTGTTTGCATAacacattctgtaaagccttcgcaataaatga
                     t"
                     /listShort="S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1057257..1058336)
                     /gene="serC"
                     /locus_tag="BSU_10020"
                     /old_locus_tag="BSU10020"
                     /EC_number="2.6.1.52"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:4337849, 16233211"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 4337849, 16233211;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine aminotransferase"
                     /protein_id="NP_388883.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10020"
                     /db_xref="EnsemblGenomes-Tr:CAB12842"
                     /db_xref="GOA:P80862"
                     /db_xref="InterPro:IPR000192"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR020578"
                     /db_xref="InterPro:IPR022278"
                     /db_xref="SubtiList:BG12673"
                     /db_xref="UniProtKB/Swiss-Prot:P80862"
                     /translation="MERTTNFNAGPAALPLEVLQKAQKEFIDFNESGMSVMELSHRSK
                     EYEAVHQKAKSLLIELMGIPEDYDILFLQGGASLQFSMLPMNFLTPEKTAHFVMTGAW
                     SEKALAETKLFGNTSITATSETDNYSYIPEVDLTDVKDGAYLHITSNNTIFGTQWQEF
                     PNSPIPLVADMSSDILSRKIDVSKFDVIYGGAQKNLGPSGVTVVIMKKSWLQNENANV
                     PKILKYSTHVKADSLYNTPPTFAIYMLSLVLEWLKENGGVEAVEQRNEQKAQVLYSCI
                     DESNGFYKGHARKDSRSRMNVTFTLRDDELTKTFVQKAKDAKMIGLGGHRSVGGCRAS
                     IYNAVSLEDCEKLAAFMKKFQQENE*"
     gene            complement(1057257..1058336)
                     /gene="serC"
                     /locus_tag="BSU_10020"
                     /old_locus_tag="BSU10020"
     misc_feature    complement(1058375..1058394)
                     /Source="Nicolas_upshift_promotors"
                     /id="U805"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.962037962037962"
                     /xcortree=3059
                     /SigmaFactorBS="atccgtcaatttcttttgataattctaattttttatcaaaaa
                     actgaattttTGTGATAGGATAATTGTATTattttatacattaacgtggaaaacaggg
                     a"
                     /listShort="serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1058386)
                     /Source="Nicolas_upshifts"
                     /id="U805"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.772227772227772"
                     /psig="0.962037962037962"
                     /xcortree=3059
                     /SigmaFactorBS="atccgtcaatttcttttgataattctaattttttatcaaaaa
                     actgaattttTGTGATAGGATAATTGTATTattttatacattaacgtggaaaacaggg
                     a"
                     /listShort="serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
     S_feature       complement(1058388..1058469)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1076420_1076501_c"
                     /HighExp="Etha, dia15, H2O2, LBGtran, G135, G180, dia5,
                     G150, Lbexp, M0t45"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S356"
     CDS             complement(1058483..1058920)
                     /gene="hinT"
                     /locus_tag="BSU_10030"
                     /old_locus_tag="BSU10030"
                     /EC_number="3.6.1.29"
                     /EC_number="3.6.1.-"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579061, 15703176, 16934294,
                     17217311, 26181368, 28516732; Product type e : enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous Hit-family phosphohydrolase,
                     adenosine phosphoramidase"
                     /protein_id="NP_388884.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10030"
                     /db_xref="EnsemblGenomes-Tr:CAB12843"
                     /db_xref="GOA:O07513"
                     /db_xref="InterPro:IPR001310"
                     /db_xref="InterPro:IPR011146"
                     /db_xref="InterPro:IPR019808"
                     /db_xref="InterPro:IPR036265"
                     /db_xref="PDB:1Y23"
                     /db_xref="SubtiList:BG12607"
                     /db_xref="UniProtKB/Swiss-Prot:O07513"
                     /translation="MHCAENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLV
                     IPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYH
                     MHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAKRLASS*"
     gene            complement(1058483..1058920)
                     /gene="hinT"
                     /locus_tag="BSU_10030"
                     /old_locus_tag="BSU10030"
     downshifts      complement(1058514)
                     /Source="Nicolas_upshifts"
                     /id="D543"
                     /incds=0
                     /nref=187
                     /ntot=248
                     /MaxReadThrough="4.31506"
                     /MaxDrop="5.61862"
                     /score="-0.366845751"
                     /energy="-8.6"
                     /TU="U806"
                     /idTUdmin="U807"
                     /TUdmin=4
                     /isTUend="TRUE"
     promotor_-10    complement(1058953..1058972)
                     /Source="Nicolas_upshift_promotors"
                     /id="U806"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2360
                     /SigmaFactorBS="tctgcattcagggtgaacgctcgccgttcatcctGTTTTCTA
                     ttttctgcatttcTGTGGTACGATGAATGTATAcatactaaacaatttcataaggagg
                     a"
                     /listShort="hinT, S356, serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1058967)
                     /Source="Nicolas_upshifts"
                     /id="U806"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2360
                     /SigmaFactorBS="tctgcattcagggtgaacgctcgccgttcatcctGTTTTCTA
                     ttttctgcatttcTGTGGTACGATGAATGTATAcatactaaacaatttcataaggagg
                     a"
                     /listShort="hinT, S356, serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
     downshifts      1058970
                     /Source="Nicolas_upshifts"
                     /id="D544"
                     /incds=0
                     /nref=1
                     /ntot=3
                     /MaxReadThrough="2.3752"
                     /MaxDrop="3.02008"
                     /score="-3.56654132"
                     /energy="-13.3"
                     /TU="NA"
                     /idTUdmin="U803"
                     /TUdmin=1034
                     /isTUend="FALSE"
     promotor_-35    complement(1058986..1058993)
                     /Source="Nicolas_upshift_promotors"
                     /id="U806"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.576423576423576"
                     /psig=1
                     /xcortree=2360
                     /SigmaFactorBS="tctgcattcagggtgaacgctcgccgttcatcctGTTTTCTA
                     ttttctgcatttcTGTGGTACGATGAATGTATAcatactaaacaatttcataaggagg
                     a"
                     /listShort="hinT, S356, serC, S355, trpP, S353, yhaH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(1058992..1059288)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1077024_1077320_c"
                     /HighExp="S7, S8, S6, S5, BT, ferm, nit, G/S, S4, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S357"
     downshifts      complement(1059035)
                     /Source="Nicolas_upshifts"
                     /id="D545"
                     /incds=0
                     /nref=40
                     /ntot=72
                     /MaxReadThrough="3.07347"
                     /MaxDrop="7.69075"
                     /score="9.88617558"
                     /energy="-14.2"
                     /TU="U807"
                     /idTUdmin="U807"
                     /TUdmin="-517"
                     /isTUend="FALSE"
     promotor_-10    complement(1059286..1059297)
                     /Source="Nicolas_upshift_promotors"
                     /id="U807"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=832
                     /SigmaFactorBS="aaacaattcccttttaacaaatgatgaatttgctGTCATAAa
                     gagacagggttctGGACATCATAAAagttgtagaggaaaagcatatcaactgaaaaat
                     g"
                     /listShort="S357, hinT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1059292)
                     /Source="Nicolas_upshifts"
                     /id="U807"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=832
                     /SigmaFactorBS="aaacaattcccttttaacaaatgatgaatttgctGTCATAAa
                     gagacagggttctGGACATCATAAAagttgtagaggaaaagcatatcaactgaaaaat
                     g"
                     /listShort="S357, hinT"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1059312..1059318)
                     /Source="Nicolas_upshift_promotors"
                     /id="U807"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=832
                     /SigmaFactorBS="aaacaattcccttttaacaaatgatgaatttgctGTCATAAa
                     gagacagggttctGGACATCATAAAagttgtagaggaaaagcatatcaactgaaaaat
                     g"
                     /listShort="S357, hinT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1059348..1059355
                     /Source="Nicolas_upshift_promotors"
                     /id="U808"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.553446553446553"
                     /psig=1
                     /xcortree=1921
                     /SigmaFactorBS="cagcaaattcatcatttgttaaaagggaatTGTTTCAAatca
                     ggccttgttTTTGGTACTATGAAGAAAAAcactataaggggagaaactatgtctctgc
                     t"
                     /listShort="ecsA, ecsB, ecsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1059369..1059388
                     /Source="Nicolas_upshift_promotors"
                     /id="U808"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.553446553446553"
                     /psig=1
                     /xcortree=1921
                     /SigmaFactorBS="cagcaaattcatcatttgttaaaagggaatTGTTTCAAatca
                     ggccttgttTTTGGTACTATGAAGAAAAAcactataaggggagaaactatgtctctgc
                     t"
                     /listShort="ecsA, ecsB, ecsC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1059378
                     /Source="Nicolas_upshifts"
                     /id="U808"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.553446553446553"
                     /psig=1
                     /xcortree=1921
                     /SigmaFactorBS="cagcaaattcatcatttgttaaaagggaatTGTTTCAAatca
                     ggccttgttTTTGGTACTATGAAGAAAAAcactataaggggagaaactatgtctctgc
                     t"
                     /listShort="ecsA, ecsB, ecsC"
                     /GFF_Attribute="listLong"
     CDS             1059408..1060151
                     /gene="ecsA"
                     /locus_tag="BSU_10040"
                     /old_locus_tag="BSU10040"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8581172, 10027970, 11807061, 18599827, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8581172, 10027970,
                     11807061, 18599827, 26735940; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (ATP-binding protein)"
                     /protein_id="NP_388885.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10040"
                     /db_xref="EnsemblGenomes-Tr:CAB12844"
                     /db_xref="GOA:P55339"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11516"
                     /db_xref="UniProtKB/Swiss-Prot:P55339"
                     /translation="MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKST
                     TIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTYIPETPVLYEELTLMEHLELTAM
                     AYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
                     PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTL
                     SELREQFGMKDAALDDLYLELTKEDAGHE*"
     gene            1059408..1060151
                     /gene="ecsA"
                     /locus_tag="BSU_10040"
                     /old_locus_tag="BSU10040"
     CDS             1060144..1061370
                     /gene="ecsB"
                     /locus_tag="BSU_10050"
                     /old_locus_tag="BSU10050"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8581172, 10027970, 15175311, 15849754, 16850406,
                     18599827, 21665535, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8581172, 10027970,
                     15175311, 15849754, 16850406, 18599827, 21665535,
                     26735940; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter (permease subunit)"
                     /protein_id="NP_388886.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10050"
                     /db_xref="EnsemblGenomes-Tr:CAB12845"
                     /db_xref="GOA:P55340"
                     /db_xref="InterPro:IPR010288"
                     /db_xref="SubtiList:BG11517"
                     /db_xref="UniProtKB/Swiss-Prot:P55340"
                     /translation="MNNMLDIWQSRLQEHIKETRTYMKYMLNDHLVIVLIFFLAGAAS
                     WYSKWIRDIPAHFPSFWVMAVLFSLVLTSSYVRTLLKEADLVFLLPLEAKMEPYLKQA
                     FVYSYVSQLFPLIALSIVAMPLYFAVTPGASLVSYAAVFVQLLLLKAWNQVMEWRTTF
                     QNDRSMKRMDVIIRFAANTLVLYFVFQSVYMYALLVYVIMAVLYLYMSSAAKRKTFKW
                     ESHIESELRRKQRFYRIANLFTDVPHLRKQAKRRAYLDFLLRLVPFEQRKTFAYMFTR
                     AFLRSSDYLGILVRLTIVFALIIMYVSASPLIAAVLTVFAIFITGIQLLPLFGHFDHL
                     ALQELYPVQKETKLKSYFSLLKTALSIQALLMSVASAYAAGLTGFLYALIGSAVLIFV
                     VLPAYMTTRLKKHGKL*"
     gene            1060144..1061370
                     /gene="ecsB"
                     /locus_tag="BSU_10050"
                     /old_locus_tag="BSU10050"
     promotor_-10    complement(1060703..1060721)
                     /Source="Nicolas_upshift_promotors"
                     /id="U809"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1033
                     /SigmaFactorBS="tttgctgcggaagacatatacagataaagaacagccATAATG
                     acatagacgagaagcGCATACATATAAACAGATTggaaaacaaaataaagaacgagtg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1060718)
                     /Source="Nicolas_upshifts"
                     /id="U809"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1033
                     /SigmaFactorBS="tttgctgcggaagacatatacagataaagaacagccATAATG
                     acatagacgagaagcGCATACATATAAACAGATTggaaaacaaaataaagaacgagtg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1060737..1060742)
                     /Source="Nicolas_upshift_promotors"
                     /id="U809"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1033
                     /SigmaFactorBS="tttgctgcggaagacatatacagataaagaacagccATAATG
                     acatagacgagaagcGCATACATATAAACAGATTggaaaacaaaataaagaacgagtg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1061390..1062100
                     /gene="ecsC"
                     /locus_tag="BSU_10060"
                     /old_locus_tag="BSU10060"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 8581172, 10027970;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="NP_388887.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10060"
                     /db_xref="EnsemblGenomes-Tr:CAB12846"
                     /db_xref="InterPro:IPR024787"
                     /db_xref="SubtiList:BG11518"
                     /db_xref="UniProtKB/Swiss-Prot:P55341"
                     /translation="MTDNQLLMQEALEWKMHFLRKDSMFERFSKRVQTKVNERIPEKI
                     HTVVTESVKKMVEATMAGSNIITYKKDTSALSLSEKNELAKKTIVSYQKVAAAEGVGT
                     GAGGIFLSIADFPLLLSIKMKCLFTLSSIYGFDVKDAQERIFLLLVFQLAFSSDDGRK
                     SLFSVIENWETEKKSIDWRVFQQEYRDYIDVVKLFQLLPGVGAAVGGIANYKLLAQLG
                     ETARHVFHLRILKETAGE*"
     gene            1061390..1062100
                     /gene="ecsC"
                     /locus_tag="BSU_10060"
                     /old_locus_tag="BSU10060"
     downshifts      1062064
                     /Source="Nicolas_upshifts"
                     /id="D546"
                     /incds=0
                     /nref=78
                     /ntot=231
                     /MaxReadThrough="1.36097"
                     /MaxDrop="4.78417"
                     /score="28.5337351"
                     /energy="-14.6"
                     /TU="NA"
                     /idTUdmin="U808"
                     /TUdmin="-8"
                     /isTUend="TRUE"
     CDS             complement(1062118..1063308)
                     /gene="sndC"
                     /locus_tag="BSU_10070"
                     /old_locus_tag="BSU10070"
                     /EC_number="3.5.1.-"
                     /experiment="publication(s) with functional evidences,
                     PMID:23944997"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23944997; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl amino acid acetylase, promiscuous
                     activity"
                     /protein_id="NP_388888.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10070"
                     /db_xref="EnsemblGenomes-Tr:CAB12847"
                     /db_xref="GOA:O07598"
                     /db_xref="InterPro:IPR002933"
                     /db_xref="InterPro:IPR011650"
                     /db_xref="InterPro:IPR017439"
                     /db_xref="InterPro:IPR036264"
                     /db_xref="SubtiList:BG12982"
                     /db_xref="UniProtKB/Swiss-Prot:O07598"
                     /translation="MSISTLQKEINKQLDGCFEEMVEIRRHFHMYPELSFQEEKTAAF
                     IASYYESLGVPIRTNVGGRGVLANIEGSEPGPTVALRADFDALPIQDEKDVPYASKVP
                     GVMHACGHDGHTAALLAVAKVLHQNRHELKGTFVMIHQHAEEYYPGGAKPMIDDGCLE
                     NTDVIFGTHLWATEPLGTILCRPGAVMAAADRFTIKVFGKGGHGAHPHDTKDAVLIGS
                     QIVSSLQHIVSRKVNPIQSAVISTGSFIADNPFNVIADQAVLIGTARSFDENVRDILE
                     KEIEAVVKGICSMHGASYEYTYEQGYPAVVNHPAETNHLVSTAKNTEGVQQVIDGEPQ
                     MGGEDFAYYLQNVKGTFFFTGAAPEQPERVYSHHHPKFDINEKAMLTAAKVLAGAAIT
                     YHQL*"
     gene            complement(1062118..1063308)
                     /gene="sndC"
                     /locus_tag="BSU_10070"
                     /old_locus_tag="BSU10070"
     downshifts      complement(1062128)
                     /Source="Nicolas_upshifts"
                     /id="D547"
                     /incds=0
                     /nref=11
                     /ntot=162
                     /MaxReadThrough="3.12546"
                     /MaxDrop="4.15559"
                     /score="-4.78420642"
                     /energy="-14.6"
                     /TU="U810"
                     /idTUdmin="U811"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     downshifts      complement(1062193)
                     /Source="Nicolas_upshifts"
                     /id="D548"
                     /incds=1
                     /nref=25
                     /ntot=206
                     /MaxReadThrough="4.92378"
                     /MaxDrop="3.21645"
                     /score="-4.78420642"
                     /energy="-14.6"
                     /TU="U810,U811"
                     /idTUdmin="U811"
                     /TUdmin="-67"
                     /isTUend="FALSE"
     promotor_-10    complement(1063332..1063351)
                     /Source="Nicolas_upshift_promotors"
                     /id="U810"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.498501498501498"
                     /psig=1
                     /xcortree=2900
                     /SigmaFactorBS="gtgacaaccctcgcagctgtgatgatgctttaaaacagcatg
                     aGTTGAAatattcagactttTTCTATACAATCATGGAAAAgcatagaaaagggggaag
                     c"
                     /listShort="yhaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1063353)
                     /Source="Nicolas_upshifts"
                     /id="U810"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.498501498501498"
                     /psig=1
                     /xcortree=2900
                     /SigmaFactorBS="gtgacaaccctcgcagctgtgatgatgctttaaaacagcatg
                     aGTTGAAatattcagactttTTCTATACAATCATGGAAAAgcatagaaaagggggaag
                     c"
                     /listShort="yhaA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1063365..1063370)
                     /Source="Nicolas_upshift_promotors"
                     /id="U810"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.498501498501498"
                     /psig=1
                     /xcortree=2900
                     /SigmaFactorBS="gtgacaaccctcgcagctgtgatgatgctttaaaacagcatg
                     aGTTGAAatattcagactttTTCTATACAATCATGGAAAAgcatagaaaagggggaag
                     c"
                     /listShort="yhaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1063381..1064772)
                     /gene="yhfA"
                     /locus_tag="BSU_10080"
                     /old_locus_tag="BSU10080"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     12107147; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="NP_388889.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10080"
                     /db_xref="EnsemblGenomes-Tr:CAB12848"
                     /db_xref="GOA:O07599"
                     /db_xref="SubtiList:BG13047"
                     /db_xref="UniProtKB/Swiss-Prot:O07599"
                     /translation="MMEVGILPVHVLYVFFIGAIILFMLLRKDTTFISLFGIFIISLW
                     ASHSLSASVSSLFHSFIYAAGELLPTIFIICFIVSMSDLLTKTGINEAMISPFASLVR
                     GPVTAYWLIGGLMFAISLFFWPSPGVALIGAVLLPAAARAGLTPLAAAMAMNLFGHGF
                     ALSGDFVIQAAPKLTADAAGIPVGDVVSASIPLVLIMGVTTTTAAFIMIQRERKKQEH
                     PTSFSPVLSGEQDNSLYLPKRLRSILAFLIPLAFLADIACMLLFNLQGNDATALIGGS
                     AICILFTVHFFVYKHKGLEKITGYFIDGFKFGFKVFGPVIPIAAFFYLGDSGYESILG
                     TSLPKGSHGIVNDLGIALSHMMPMSKELAATALTAAGAITGLDGSGFSGISLAGSIAK
                     LFSSALHADPAILTALGQISAIWVGGGTLVPWALIPAAAICKVDPFELARKNFIPVAI
                     GLLVTTLAAVMML*"
     gene            complement(1063381..1064772)
                     /gene="yhfA"
                     /locus_tag="BSU_10080"
                     /old_locus_tag="BSU10080"
     promotor_-10    complement(1064783..1064802)
                     /Source="Nicolas_upshift_promotors"
                     /id="U811"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1283
                     /SigmaFactorBS="ttccatcataaccctcccctctgtCCCGGCACCTtccgcccg
                     cctaTGAATAATCTGTAAGCGGAAggagtgatcgatgatggaagtcgggattttgcct
                     g"
                     /listShort="yhfA, yhaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1064788)
                     /Source="Nicolas_upshifts"
                     /id="U811"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1283
                     /SigmaFactorBS="ttccatcataaccctcccctctgtCCCGGCACCTtccgcccg
                     cctaTGAATAATCTGTAAGCGGAAggagtgatcgatgatggaagtcgggattttgcct
                     g"
                     /listShort="yhfA, yhaA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1064815..1064824)
                     /Source="Nicolas_upshift_promotors"
                     /id="U811"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1283
                     /SigmaFactorBS="ttccatcataaccctcccctctgtCCCGGCACCTtccgcccg
                     cctaTGAATAATCTGTAAGCGGAAggagtgatcgatgatggaagtcgggattttgcct
                     g"
                     /listShort="yhfA, yhaA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1064838..1065152)
                     /gene="yhgB"
                     /locus_tag="BSU_10090"
                     /old_locus_tag="BSU10090"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_388890.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10090"
                     /db_xref="EnsemblGenomes-Tr:CAB12849"
                     /db_xref="SubtiList:BG10426"
                     /db_xref="UniProtKB/Swiss-Prot:P38048"
                     /translation="MKHTCPVCGFKDWLNRHMIMKAIILMKSARAAVFSSDLMSTRCS
                     TRITHIEPSESIIAYRKNWLAEGCVIFSPECFPKHLQKANRGLRHHLIEQLKQINVHL
                     PS*"
     gene            complement(1064838..1065152)
                     /gene="yhgB"
                     /locus_tag="BSU_10090"
                     /old_locus_tag="BSU10090"
     CDS             complement(1065197..1065697)
                     /gene="hmoB"
                     /locus_tag="BSU_10100"
                     /old_locus_tag="BSU10100"
                     /EC_number="1.14.99.48"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:21873409, 22531134, 24582752"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21873409, 22531134,
                     24582752; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="heme-degrading monooxygenase"
                     /protein_id="NP_388891.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10100"
                     /db_xref="EnsemblGenomes-Tr:CAB12850"
                     /db_xref="GOA:P38049"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="PDB:4OZ5"
                     /db_xref="SubtiList:BG10427"
                     /db_xref="UniProtKB/Swiss-Prot:P38049"
                     /translation="MKVYITYGTADFLKTIVQKHPSENILLMQGQENAILIHETNGDT
                     VFQAPHAYEVIDQVGEIKHPGFAVLNNIAVTQEGRPLFENRFKNRAGKVENEPGFEAI
                     RVLRPLDSDTYVILTLWETESAFQDWQQSGSYKEAHKKRDTSAGIDTTSIFSRPSYVT
                     TYFAVE*"
     gene            complement(1065197..1065697)
                     /gene="hmoB"
                     /locus_tag="BSU_10100"
                     /old_locus_tag="BSU10100"
     downshifts      complement(1065224)
                     /Source="Nicolas_upshifts"
                     /id="D549"
                     /incds=0
                     /nref=145
                     /ntot=254
                     /MaxReadThrough="3.45185"
                     /MaxDrop="5.6374"
                     /score="15.5142908"
                     /energy="-14.8"
                     /TU="U812"
                     /idTUdmin="U812"
                     /TUdmin="-546"
                     /isTUend="FALSE"
     promotor_-10    complement(1065710..1065729)
                     /Source="Nicolas_upshift_promotors"
                     /id="U812"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.98101898101898"
                     /xcortree=101
                     /SigmaFactorBS="tatgggaaaaattgtttggaattatgttcgaagcactcgcca
                     atAGaaacttataccattgtTTTGATATACTAGCAAGCAGgaggtggctgatatgaag
                     g"
                     /listShort="yhgC, yhgB, yhfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    1065712..1065716
                     /Source="Nicolas_upshift_promotors"
                     /id="U813"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig="0.957042957042957"
                     /xcortree=1837
                     /SigmaFactorBS="tcccatatgtaatataaaccttcatatcagccacctcctGCT
                     TGctagtatatcaaaacAATGGTATAAGTTTCTATTGgcgagtgcttcgaacataatt
                     c"
                     /listShort="pbpF, hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(1065731)
                     /Source="Nicolas_upshifts"
                     /id="U812"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.98101898101898"
                     /xcortree=101
                     /SigmaFactorBS="tatgggaaaaattgtttggaattatgttcgaagcactcgcca
                     atAGaaacttataccattgtTTTGATATACTAGCAAGCAGgaggtggctgatatgaag
                     g"
                     /listShort="yhgC, yhgB, yhfA"
                     /GFF_Attribute="listLong"
     promotor_-10    1065732..1065751
                     /Source="Nicolas_upshift_promotors"
                     /id="U813"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig="0.957042957042957"
                     /xcortree=1837
                     /SigmaFactorBS="tcccatatgtaatataaaccttcatatcagccacctcctGCT
                     TGctagtatatcaaaacAATGGTATAAGTTTCTATTGgcgagtgcttcgaacataatt
                     c"
                     /listShort="pbpF, hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1065733
                     /Source="Nicolas_upshifts"
                     /id="U813"
                     /multdbtbs="SigA"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.953046953046953"
                     /psig="0.957042957042957"
                     /xcortree=1837
                     /SigmaFactorBS="tcccatatgtaatataaaccttcatatcagccacctcctGCT
                     TGctagtatatcaaaacAATGGTATAAGTTTCTATTGgcgagtgcttcgaacataatt
                     c"
                     /listShort="pbpF, hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1065746..1065747)
                     /Source="Nicolas_upshift_promotors"
                     /id="U812"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.98101898101898"
                     /xcortree=101
                     /SigmaFactorBS="tatgggaaaaattgtttggaattatgttcgaagcactcgcca
                     atAGaaacttataccattgtTTTGATATACTAGCAAGCAGgaggtggctgatatgaag
                     g"
                     /listShort="yhgC, yhgB, yhfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1065764..1065770
                     /Source="Nicolas_upshift_promotors"
                     /id="U814"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=871
                     /SigmaFactorBS="acaatggtataagtttctattggcgagtgcttcgAACATAAt
                     tccaaacaattttTCCCATACTACCtttagaaaggcgaggtgagttcatgtttaagat
                     a"
                     /listShort="pbpF, hemE, hemH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1065785..1065796
                     /Source="Nicolas_upshift_promotors"
                     /id="U814"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=871
                     /SigmaFactorBS="acaatggtataagtttctattggcgagtgcttcgAACATAAt
                     tccaaacaattttTCCCATACTACCtttagaaaggcgaggtgagttcatgtttaagat
                     a"
                     /listShort="pbpF, hemE, hemH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1065790
                     /Source="Nicolas_upshifts"
                     /id="U814"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=871
                     /SigmaFactorBS="acaatggtataagtttctattggcgagtgcttcgAACATAAt
                     tccaaacaattttTCCCATACTACCtttagaaaggcgaggtgagttcatgtttaagat
                     a"
                     /listShort="pbpF, hemE, hemH"
                     /GFF_Attribute="listLong"
     CDS             1065819..1067963
                     /gene="pbpF"
                     /locus_tag="BSU_10110"
                     /old_locus_tag="BSU10110"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8335642, 11567005, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8335642, 11567005,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2C (1F class)
                     required for spore germination"
                     /protein_id="NP_388892.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10110"
                     /db_xref="EnsemblGenomes-Tr:CAB12851"
                     /db_xref="GOA:P38050"
                     /db_xref="InterPro:IPR001264"
                     /db_xref="InterPro:IPR001460"
                     /db_xref="InterPro:IPR012338"
                     /db_xref="InterPro:IPR023346"
                     /db_xref="InterPro:IPR036950"
                     /db_xref="SubtiList:BG10428"
                     /db_xref="UniProtKB/Swiss-Prot:P38050"
                     /translation="MFKIKKKKLFIPIIILVLTAFLALIGYISIIFLGHYVIDEKKLI
                     LHASSKIVDQNGDEVASLYTENREPVSINEIPKQVREAFIAVEDKRFYEHHGIDAKSV
                     GRAVYRDILAGGKVEGGSTITQQLAKNIFLTHDKTFLRKTKEVIIAINLERDYSKDKL
                     LEMYLNQLYFGHGVYGIQAASHYYFNKEVKDLTVSEGAVLAAIPKAPSTYSPILHPDK
                     NKERRDTILGMMNDQGYISAKEAVTAQGRTLGLHVKKQSETPWFDSYIDLVIKEAEDK
                     YSISGEQLLQGGYTIKVPLDSKLQKTAYQVMKEGSYYPGTDQNAEGSAVFINNKTGGV
                     EAAIGGRDYTSKGYNRVTAVRQPGSTFKPLAVYGPAMQEKKFKPYSLLKDELQSYGDY
                     TPKNYDSRYEGEVTMSDAITYSKNAPAVWTLNEIGVETGKSYLKANGIDIPDEGLALA
                     LGGLEKGVSPLQLAGAFHTFAANGTYTEPFFISSIIDEDGETIADHKEEGKRVFSKQT
                     SWNMTRMLQQVVKKGTATSGTYHGDLAGKTGSTSYTGVSGATKDAWFAGYTPKITGAV
                     WMGYDKTDQNHYLKAGSSYPTRLFKDILTQAGETGHVFTKPKNVKELESPIELKPVKT
                     LTADYTFKAAGLFTIELKWDAQEDDRAVYRIYVNKDGEETLLDSVEGKGSYEIPYANL
                     FSGASYKIVPYNTQTKREGEGTDYVQPKLFSS*"
     gene            1065819..1067963
                     /gene="pbpF"
                     /locus_tag="BSU_10110"
                     /old_locus_tag="BSU10110"
     promotor_-10    complement(1065863..1065874)
                     /Source="Nicolas_upshift_promotors"
                     /id="U815"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.595404595404595"
                     /psig="0.595404595404595"
                     /xcortree=1190
                     /SigmaFactorBS="ataatggccgagaaaaataattgaaatatatcCTATTAAagc
                     gagaaaagcaGTTAACACTAAAataatgataggtataaaaagtttctttttctttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1065866)
                     /Source="Nicolas_upshifts"
                     /id="U815"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.595404595404595"
                     /psig="0.595404595404595"
                     /xcortree=1190
                     /SigmaFactorBS="ataatggccgagaaaaataattgaaatatatcCTATTAAagc
                     gagaaaagcaGTTAACACTAAAataatgataggtataaaaagtttctttttctttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1065888..1065894)
                     /Source="Nicolas_upshift_promotors"
                     /id="U815"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.595404595404595"
                     /psig="0.595404595404595"
                     /xcortree=1190
                     /SigmaFactorBS="ataatggccgagaaaaataattgaaatatatcCTATTAAagc
                     gagaaaagcaGTTAACACTAAAataatgataggtataaaaagtttctttttctttatc
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1068000..1068006
                     /Source="Nicolas_upshift_promotors"
                     /id="U816"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.377622377622378"
                     /psig="0.998001998001998"
                     /xcortree=1606
                     /SigmaFactorBS="tcggcgattttttgaactttgagctacattTCTATACcattt
                     gcctaaaaCAAGGTATAGTGTAATAAGTcaagaaatacgaacgtatggttgccgtatg
                     a"
                     /listShort="hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1068020..1068039
                     /Source="Nicolas_upshift_promotors"
                     /id="U816"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.377622377622378"
                     /psig="0.998001998001998"
                     /xcortree=1606
                     /SigmaFactorBS="tcggcgattttttgaactttgagctacattTCTATACcattt
                     gcctaaaaCAAGGTATAGTGTAATAAGTcaagaaatacgaacgtatggttgccgtatg
                     a"
                     /listShort="hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1068030
                     /Source="Nicolas_upshifts"
                     /id="U816"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.377622377622378"
                     /psig="0.998001998001998"
                     /xcortree=1606
                     /SigmaFactorBS="tcggcgattttttgaactttgagctacattTCTATACcattt
                     gcctaaaaCAAGGTATAGTGTAATAAGTcaagaaatacgaacgtatggttgccgtatg
                     a"
                     /listShort="hemE, hemH, hemY"
                     /GFF_Attribute="listLong"
     CDS             1068085..1069146
                     /gene="hemE"
                     /locus_tag="BSU_10120"
                     /old_locus_tag="BSU10120"
                     /EC_number="4.1.1.37"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:10217486, 17122346"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10217486, 17122346;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen III decarboxylase"
                     /protein_id="NP_388893.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10120"
                     /db_xref="EnsemblGenomes-Tr:CAB12852"
                     /db_xref="GOA:P32395"
                     /db_xref="InterPro:IPR000257"
                     /db_xref="InterPro:IPR006361"
                     /db_xref="PDB:2INF"
                     /db_xref="SubtiList:BG10429"
                     /db_xref="UniProtKB/Swiss-Prot:P32395"
                     /translation="MSKRETFNETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEK
                     YGLFEITHQPELCAYVTRLPVEQYGVDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQ
                     PIRSLADIEKLGQIDPEQDVPYVLETIKLLVNEQLNVPLIGFSGAPFTLASYMIEGGP
                     SKNYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIEAGAKAIQIFDSWVGALNQAD
                     YRTYIKPVMNRIFSELAKENVPLIMFGVGASHLAGDWHDLPLDVVGLDWRLGIDEARS
                     KGITKTVQGNLDPSILLAPWEVIEQKTKEILDQGMESDGFIFNLGHGVFPDVSPEVLK
                     KLTAFVHEYSQNKKMGQYS*"
     gene            1068085..1069146
                     /gene="hemE"
                     /locus_tag="BSU_10120"
                     /old_locus_tag="BSU10120"
     CDS             1069218..1070150
                     /gene="hemH"
                     /locus_tag="BSU_10130"
                     /old_locus_tag="BSU10130"
                     /EC_number="4.99.1.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:8119288, 12686546, 12761666, 16140324, 16453119,
                     17198378, 20543190, 21052751"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8119288, 12686546,
                     12761666, 16140324, 16453119, 17198378, 20543190,
                     21052751; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="NP_388894.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10130"
                     /db_xref="EnsemblGenomes-Tr:CAB12853"
                     /db_xref="GOA:P32396"
                     /db_xref="InterPro:IPR001015"
                     /db_xref="InterPro:IPR019772"
                     /db_xref="InterPro:IPR033644"
                     /db_xref="InterPro:IPR033659"
                     /db_xref="PDB:1AK1"
                     /db_xref="PDB:1C1H"
                     /db_xref="PDB:1C9E"
                     /db_xref="PDB:1DOZ"
                     /db_xref="PDB:1FJI"
                     /db_xref="PDB:1LD3"
                     /db_xref="PDB:1N0I"
                     /db_xref="PDB:2AC2"
                     /db_xref="PDB:2AC4"
                     /db_xref="PDB:2H1V"
                     /db_xref="PDB:2H1W"
                     /db_xref="PDB:2HK6"
                     /db_xref="PDB:2Q2N"
                     /db_xref="PDB:2Q2O"
                     /db_xref="PDB:2Q3J"
                     /db_xref="PDB:3GOQ"
                     /db_xref="PDB:3M4Z"
                     /db_xref="SubtiList:BG10430"
                     /db_xref="UniProtKB/Swiss-Prot:P32396"
                     /translation="MSRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKPEPEMLQDLK
                     DRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHK
                     DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDR
                     VKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAV
                     GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVV
                     TDDIGASYYRPEMPNAKPEFIDALATVVLKKLGR*"
     gene            1069218..1070150
                     /gene="hemH"
                     /locus_tag="BSU_10130"
                     /old_locus_tag="BSU10130"
     CDS             1070165..1071577
                     /gene="hemY"
                     /locus_tag="BSU_10140"
                     /old_locus_tag="BSU10140"
                     /EC_number="1.3.3.4"
                     /function="16.10: Respire"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9217019, 9784236, 10498703, 20543190"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9217019, 9784236,
                     10498703, 20543190; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous protoporphyrinogen IX and
                     coproporphyrinogen III oxidase"
                     /protein_id="NP_388895.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10140"
                     /db_xref="EnsemblGenomes-Tr:CAB12854"
                     /db_xref="GOA:P32397"
                     /db_xref="InterPro:IPR002937"
                     /db_xref="InterPro:IPR004572"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="PDB:3I6D"
                     /db_xref="SubtiList:BG10431"
                     /db_xref="UniProtKB/Swiss-Prot:P32397"
                     /translation="MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP
                     RVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRT
                     LHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRRV
                     GDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQ
                     LTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTL
                     DADSVIVTAPHKAAAGMLSELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVI
                     SRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLK
                     KVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGI
                     PDCIDQGKAAVSDALTYLFS*"
     gene            1070165..1071577
                     /gene="hemY"
                     /locus_tag="BSU_10140"
                     /old_locus_tag="BSU10140"
     downshifts      1070168
                     /Source="Nicolas_upshifts"
                     /id="D550"
                     /incds=0
                     /nref=1
                     /ntot=19
                     /MaxReadThrough="7.68191"
                     /MaxDrop="2.667"
                     /score="28.7532434"
                     /energy="-11.6"
                     /TU="U813,U816"
                     /idTUdmin="U814"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      1071554
                     /Source="Nicolas_upshifts"
                     /id="D551"
                     /incds=0
                     /nref=195
                     /ntot=254
                     /MaxReadThrough="2.9859"
                     /MaxDrop="6.7703"
                     /score="28.7532434"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U813"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1071638..1071645
                     /Source="Nicolas_upshift_promotors"
                     /id="U817"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig=1
                     /xcortree=2648
                     /SigmaFactorBS="tttgatgtgcaatggcaatattgtgtaaaaaatgATTGAATT
                     gaacagcaggttaTGATACATTTGCATATGTACttaatgactaaaatgttcaaacggt
                     c"
                     /listShort="yhgD, S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1071659..1071678
                     /Source="Nicolas_upshift_promotors"
                     /id="U817"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig=1
                     /xcortree=2648
                     /SigmaFactorBS="tttgatgtgcaatggcaatattgtgtaaaaaatgATTGAATT
                     gaacagcaggttaTGATACATTTGCATATGTACttaatgactaaaatgttcaaacggt
                     c"
                     /listShort="yhgD, S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1071664
                     /Source="Nicolas_upshifts"
                     /id="U817"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.825174825174825"
                     /psig=1
                     /xcortree=2648
                     /SigmaFactorBS="tttgatgtgcaatggcaatattgtgtaaaaaatgATTGAATT
                     gaacagcaggttaTGATACATTTGCATATGTACttaatgactaaaatgttcaaacggt
                     c"
                     /listShort="yhgD, S358, yhgE"
                     /GFF_Attribute="listLong"
     CDS             1071723..1072298
                     /gene="yhgD"
                     /locus_tag="BSU_10150"
                     /old_locus_tag="BSU10150"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 15944459, 23695570;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of unknown target"
                     /protein_id="NP_388896.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10150"
                     /db_xref="EnsemblGenomes-Tr:CAB12855"
                     /db_xref="GOA:P32398"
                     /db_xref="InterPro:IPR001647"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR023772"
                     /db_xref="InterPro:IPR036271"
                     /db_xref="SubtiList:BG10432"
                     /db_xref="UniProtKB/Swiss-Prot:P32398"
                     /translation="MSIDRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTF
                     FKNKEELFDEIFTTLLKEMKQKADEAMEPSLPFHENVHRALFAILEFRKTHQLTIKIF
                     QENAEIGTMAVQEVIQKMERSILSYIKSKIEDGIKSGAIKPCDPELTAFVMLKLYIAL
                     IFDWEKQHPPLDKETIAGLLELYVVKGLSAN*"
     gene            1071723..1072298
                     /gene="yhgD"
                     /locus_tag="BSU_10150"
                     /old_locus_tag="BSU10150"
     promotor_-35    1072042..1072045
                     /Source="Nicolas_upshift_promotors"
                     /id="U818"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.731268731268731"
                     /psig="0.731268731268731"
                     /xcortree=140
                     /SigmaFactorBS="aaacacatcagctgacgattaaaattttccaagagaatgccg
                     AGATtggtacaatggcagttCAGGAAGTGATCCAGAAAATggagcgatccatcctgtc
                     t"
                     /listShort="S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1072060
                     /Source="Nicolas_upshifts"
                     /id="U818"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.731268731268731"
                     /psig="0.731268731268731"
                     /xcortree=140
                     /SigmaFactorBS="aaacacatcagctgacgattaaaattttccaagagaatgccg
                     AGATtggtacaatggcagttCAGGAAGTGATCCAGAAAATggagcgatccatcctgtc
                     t"
                     /listShort="S358, yhgE"
                     /GFF_Attribute="listLong"
     promotor_-10    1072062..1072081
                     /Source="Nicolas_upshift_promotors"
                     /id="U818"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.731268731268731"
                     /psig="0.731268731268731"
                     /xcortree=140
                     /SigmaFactorBS="aaacacatcagctgacgattaaaattttccaagagaatgccg
                     AGATtggtacaatggcagttCAGGAAGTGATCCAGAAAATggagcgatccatcctgtc
                     t"
                     /listShort="S358, yhgE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1072299..1072368
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1090331_1090400"
                     /HighExp="G135, G150, G180, BI, Salt, Etha, Cold, Heat,
                     Oxctl, LBGexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB, SigA"
                     /TUshortPSig="0.731, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S358"
     CDS             1072369..1074696
                     /gene="yhgE"
                     /locus_tag="BSU_10160"
                     /old_locus_tag="BSU10160"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15576783; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative methyl-accepting protein"
                     /protein_id="NP_388897.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10160"
                     /db_xref="EnsemblGenomes-Tr:CAB12856"
                     /db_xref="GOA:P32399"
                     /db_xref="InterPro:IPR017500"
                     /db_xref="InterPro:IPR017501"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR023908"
                     /db_xref="SubtiList:BG10433"
                     /db_xref="UniProtKB/Swiss-Prot:P32399"
                     /translation="MNTIRSQWKDIVTSKKLLIPIIAILFVPLIYSGVFLKAYWDPYG
                     TVDQLPVVVVNQDKGATYEGEKLQIGDDLVKELKDNNNFDWHFSNDLDQSLKDLLNQK
                     YYLVVEIPEDFSKNASTVLDKNPKKLDLKYHTNAGSNYVGATIGEKAIDKLKASVSKE
                     VTEQYTKVIFDNFKDIAKGLSDASSGAKKIDDGTKDAKNGSAQLKENLAKLKESTATI
                     SDKTAQLADGAAQVTSGIQSLDSSLGKFQDSSNQIYDKSSQLAAGSGELTSKMNELLA
                     GLQNVQKGTPNLTNGLDQLNSKVQEGSEKAAKAEKIINALDLTKLETAVNNLEKSETA
                     MKEFKKQLTDFENSLKNRDQAFKNVINSSDFLTAEQKSQLINSVEKKLPQVDAPDFDQ
                     ILSQLPTADQLPDIATIKSSLEDVKAQVAQVKAMPEATSKLYNGAKTIQDAIDRLTEG
                     ADKIYNGSQKLTDGQTKLTAGIGEYNKQFAKAKAGSEQLVTGSSQVSGGLFKLLDGSK
                     QVQSGSSKLADGSASLDTGLGKLLDGTGELSSKLKDAADQTGDIDADDQTYGMFADPV
                     KTKDDAIHSVPNYGTGLTPYILSMGLYVGGIMLTVVFPLKEASGRPRNGFEWFFSKFN
                     VMMLVGIIQSLIVATVLLLGIGLEVESTWRFYVFTIITSLAFLAIIQFLATTMGNPGR
                     FIAVIILVLQLGASGGTFPLELLPNFYQVIHGALPMTYSINGFRAVISNGDFGYMWQM
                     AGVLIGIALVMIALSITYFTMLSRKEETSEEQPAS*"
     gene            1072369..1074696
                     /gene="yhgE"
                     /locus_tag="BSU_10160"
                     /old_locus_tag="BSU10160"
     downshifts      1074678
                     /Source="Nicolas_upshifts"
                     /id="D552"
                     /incds=0
                     /nref=65
                     /ntot=211
                     /MaxReadThrough="0.57274"
                     /MaxDrop="5.58483"
                     /score="-4.79013797"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U817"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1074738..1075715)
                     /gene="fabHB"
                     /locus_tag="BSU_10170"
                     /old_locus_tag="BSU10170"
                     /EC_number="2.3.1.180"
                     /EC_number="2.3.1.38"
                     /function="16.8: Protect"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10629181, 21383089, 21542858"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10629181, 21383089,
                     21542858; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-acyl carrier protein synthase III
                     2"
                     /protein_id="NP_388898.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10170"
                     /db_xref="EnsemblGenomes-Tr:CAB12857"
                     /db_xref="GOA:O07600"
                     /db_xref="InterPro:IPR004655"
                     /db_xref="InterPro:IPR013747"
                     /db_xref="InterPro:IPR013751"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="SubtiList:BG13048"
                     /db_xref="UniProtKB/Swiss-Prot:O07600"
                     /translation="MSKAKITAIGTYAPSRRLTNADLEKIVDTSDEWIVQRTGMRERR
                     IADEHQFTSDLCIEAVKNLKSRYKGTLDDVDMILVATTTSDYAFPSTACRVQEYFGWE
                     STGALDINATCAGLTYGLHLANGLITSGLHQKILVIAGETLSKVTDYTDRTTCVLFGD
                     AAGALLVERDEETPGFLASVQGTSGNGGDILYRAGLRNEINGVQLVGSGKMVQNGREV
                     YKWAARTVPGEFERLLHKAGLSSDDLDWFVPHSANLRMIESICEKTPFPIEKTLTSVE
                     HYGNTSSVSIVLALDLAVKAGKLKKDQIVLLFGFGGGLTYTGLLIKWGM*"
     gene            complement(1074738..1075715)
                     /gene="fabHB"
                     /locus_tag="BSU_10170"
                     /old_locus_tag="BSU10170"
     downshifts      complement(1074751)
                     /Source="Nicolas_upshifts"
                     /id="D553"
                     /incds=0
                     /nref=21
                     /ntot=217
                     /MaxReadThrough="1.99012"
                     /MaxDrop="7.90433"
                     /score="-9.17544275"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U819"
                     /TUdmin="-19"
                     /isTUend="TRUE"
     promotor_-10    complement(1075729..1075748)
                     /Source="Nicolas_upshift_promotors"
                     /id="U819"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.999000999001"
                     /xcortree=2184
                     /SigmaFactorBS="atctacacttctctttttttgtaaaaaaaccttctttttAGT
                     ACCAgatactaatatctAGTGTTATAATCTGACCATAaggagtgattcatatgtcaaa
                     a"
                     /listShort="fabHB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1075747)
                     /Source="Nicolas_upshifts"
                     /id="U819"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.999000999001"
                     /xcortree=2184
                     /SigmaFactorBS="atctacacttctctttttttgtaaaaaaaccttctttttAGT
                     ACCAgatactaatatctAGTGTTATAATCTGACCATAaggagtgattcatatgtcaaa
                     a"
                     /listShort="fabHB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1075762..1075768)
                     /Source="Nicolas_upshift_promotors"
                     /id="U819"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.466533466533467"
                     /psig="0.999000999001"
                     /xcortree=2184
                     /SigmaFactorBS="atctacacttctctttttttgtaaaaaaaccttctttttAGT
                     ACCAgatactaatatctAGTGTTATAATCTGACCATAaggagtgattcatatgtcaaa
                     a"
                     /listShort="fabHB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1075774..1075782
                     /Source="Nicolas_upshift_promotors"
                     /id="U820"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=3194
                     /SigmaFactorBS="tataacactagatattagtatctggtactaaaaaGAAGGTTT
                     TtttacaaaaaAAGAGAAGTGTAGATAGGAatctatgaaaaagaaaaaggaggctgaa
                     a"
                     /listShort="yhfC, S360, yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1075793..1075811
                     /Source="Nicolas_upshift_promotors"
                     /id="U820"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=3194
                     /SigmaFactorBS="tataacactagatattagtatctggtactaaaaaGAAGGTTT
                     TtttacaaaaaAAGAGAAGTGTAGATAGGAatctatgaaaaagaaaaaggaggctgaa
                     a"
                     /listShort="yhfC, S360, yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1075800
                     /Source="Nicolas_upshifts"
                     /id="U820"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=3194
                     /SigmaFactorBS="tataacactagatattagtatctggtactaaaaaGAAGGTTT
                     TtttacaaaaaAAGAGAAGTGTAGATAGGAatctatgaaaaagaaaaaggaggctgaa
                     a"
                     /listShort="yhfC, S360, yhfE, yhfF"
                     /GFF_Attribute="listLong"
     CDS             1075842..1076618
                     /gene="yhfC"
                     /locus_tag="BSU_10180"
                     /old_locus_tag="BSU10180"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388899.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10180"
                     /db_xref="EnsemblGenomes-Tr:CAB12858"
                     /db_xref="GOA:O07601"
                     /db_xref="InterPro:IPR011397"
                     /db_xref="SubtiList:BG13049"
                     /db_xref="UniProtKB/Swiss-Prot:O07601"
                     /translation="MVSQEAVVFLALSGAIAFLLPIGLIVWFKRKYGASLKVFFIGAL
                     TFFVFAQLLEGGVHVYVLQVNEMTKEAMQHPLWYGIYGCLMAGIFEECGRYLMMRFFM
                     KRHHTWADGLAFGAGHGGLEAILITGLSSISLIVYAFAINSGTFEQLLVNGDVKQALL
                     PIQEQLLHTPSYEWMLGGIERISAIAVQIGLSLLVLYAVKNRRPLFLLYSILLHALFN
                     VPAVLYQRGIIEHAAAVEIIVALIAALSVYWIVKAKRVFQ*"
     gene            1075842..1076618
                     /gene="yhfC"
                     /locus_tag="BSU_10180"
                     /old_locus_tag="BSU10180"
     S_feature       complement(1076334..1076955)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1094366_1094987_c"
                     /HighExp="B36, BT, B60, Pyr, S8, G/S, G135, Mal, M/G,
                     Glucon"
                     /AntisenseName="yhfC"
                     /AntisenseCor="-0.12937903461570099"
                     /AntisenseRegPval="-1.5"
                     /CDS_PredictionProba="0.51248700000000003"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S359"
     S_feature       1076619..1076990
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1094651_1095022"
                     /HighExp="Lbstat, S2, M0t90, M40t90, HiOs, SMMPr, T-2.40H,
                     Etha, Lbtran, Cold"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.48518699999999998"
                     /TUshortSig="SigH"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S360"
     promotor_-10    complement(1076933..1076952)
                     /Source="Nicolas_upshift_promotors"
                     /id="U821"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1428
                     /SigmaFactorBS="tattttctacttaaaatatactcttttcccgagggacccGTC
                     CAATCTTttcctatcaatctCTCATATGCTGTAGAGAGCAtgggaagaggagggattt
                     c"
                     /listShort="S359"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1076954)
                     /Source="Nicolas_upshifts"
                     /id="U821"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1428
                     /SigmaFactorBS="tattttctacttaaaatatactcttttcccgagggacccGTC
                     CAATCTTttcctatcaatctCTCATATGCTGTAGAGAGCAtgggaagaggagggattt
                     c"
                     /listShort="S359"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1076966..1076975)
                     /Source="Nicolas_upshift_promotors"
                     /id="U821"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1428
                     /SigmaFactorBS="tattttctacttaaaatatactcttttcccgagggacccGTC
                     CAATCTTttcctatcaatctCTCATATGCTGTAGAGAGCAtgggaagaggagggattt
                     c"
                     /listShort="S359"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1076968..1076975
                     /Source="Nicolas_upshift_promotors"
                     /id="U822"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.96003996003996"
                     /xcortree=2233
                     /SigmaFactorBS="atgctctctacagcatatgagagattgataggaaaaGATTGG
                     ACgggtccctcgggaaAAGAGTATATTTTAAGTAGAaaataaaaggaggaatgcccta
                     t"
                     /listShort="yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1076990..1077009
                     /Source="Nicolas_upshift_promotors"
                     /id="U822"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.96003996003996"
                     /xcortree=2233
                     /SigmaFactorBS="atgctctctacagcatatgagagattgataggaaaaGATTGG
                     ACgggtccctcgggaaAAGAGTATATTTTAAGTAGAaaataaaaggaggaatgcccta
                     t"
                     /listShort="yhfE, yhfF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1076992
                     /Source="Nicolas_upshifts"
                     /id="U822"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.78921078921079"
                     /psig="0.96003996003996"
                     /xcortree=2233
                     /SigmaFactorBS="atgctctctacagcatatgagagattgataggaaaaGATTGG
                     ACgggtccctcgggaaAAGAGTATATTTTAAGTAGAaaataaaaggaggaatgcccta
                     t"
                     /listShort="yhfE, yhfF"
                     /GFF_Attribute="listLong"
     CDS             1077031..1078071
                     /gene="yhfE"
                     /locus_tag="BSU_10200"
                     /old_locus_tag="BSU10200"
                     /EC_number="3.4.11.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15713475, 15743956;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminopeptidase"
                     /protein_id="NP_388901.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10200"
                     /db_xref="EnsemblGenomes-Tr:CAB12860"
                     /db_xref="GOA:O07603"
                     /db_xref="InterPro:IPR008007"
                     /db_xref="InterPro:IPR023367"
                     /db_xref="SubtiList:BG13051"
                     /db_xref="UniProtKB/Swiss-Prot:O07603"
                     /translation="MTSVRKTMELIKELVSIPSPTGNTYEVINYIESLLKEWKVETVR
                     NHKGGLIATLPGRDTSRHRMLTAHVDTLGAMVKEIKADGRLKIDLIGGFRYNSIEGEY
                     CQIETASGKMYTGTILMHQTSVHVYKDAGKAERNQENMEIRLDEPVHCRKDTEELGIG
                     VGDFVSFDPRVEITSSGFIKSRHLDDKASVALLLRLIHEIQTEDIELPYTTHFLISNN
                     EEIGYGGNSNIPPETVEYLAVDMGAIGDGQATDEYSVSICVKDASGPYHYQLRKHLVQ
                     LAEKHHIDYKLDIYPYYGSDASAAIKSGHDIVHGLIGPGIDASHAFERTHKSSLRHTA
                     KLLYYYVQSPMV*"
     gene            1077031..1078071
                     /gene="yhfE"
                     /locus_tag="BSU_10200"
                     /old_locus_tag="BSU10200"
     CDS             1078084..1078491
                     /gene="yhfF"
                     /locus_tag="BSU_10210"
                     /old_locus_tag="BSU10210"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11157739, 14517985;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA-binding PUA-containing enzyme"
                     /protein_id="NP_388902.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10210"
                     /db_xref="EnsemblGenomes-Tr:CAB12861"
                     /db_xref="InterPro:IPR007374"
                     /db_xref="InterPro:IPR009326"
                     /db_xref="InterPro:IPR015947"
                     /db_xref="SubtiList:BG13052"
                     /db_xref="UniProtKB/Swiss-Prot:O07604"
                     /translation="MKIYKLKSTFGWEGDDGLGEQLIQQILAGEKSATCAPKSLYSKD
                     ELRDVYQTAGQLVTVYDKHDNPRCNIKVTDVFETTFGAPDMRLVKGEGNGDRIEEFQE
                     DHRMAWAELIKSGELELNEDTVLITELFVLVKD*"
     gene            1078084..1078491
                     /gene="yhfF"
                     /locus_tag="BSU_10210"
                     /old_locus_tag="BSU10210"
     downshifts      1078462
                     /Source="Nicolas_upshifts"
                     /id="D554"
                     /incds=0
                     /nref=24
                     /ntot=228
                     /MaxReadThrough="0.87656"
                     /MaxDrop="5.21108"
                     /score="22.0862441"
                     /energy="-20.3"
                     /TU="U822"
                     /idTUdmin="U822"
                     /TUdmin="-23"
                     /isTUend="FALSE"
     CDS             complement(1078528..1079817)
                     /gene="gltT"
                     /locus_tag="BSU_10220"
                     /old_locus_tag="BSU10220"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:8634258, 10588697, 11148213, 15849754, 16850406,
                     17673229, 25344233"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8634258, 10588697,
                     11148213, 15849754, 16850406, 17673229, 25344233; Product
                     type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="proton/sodium-glutamate (aspartate) symport
                     permease"
                     /protein_id="NP_388903.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10220"
                     /db_xref="EnsemblGenomes-Tr:CAB12862"
                     /db_xref="GOA:O07605"
                     /db_xref="InterPro:IPR001991"
                     /db_xref="InterPro:IPR018107"
                     /db_xref="InterPro:IPR033380"
                     /db_xref="InterPro:IPR036458"
                     /db_xref="SubtiList:BG12595"
                     /db_xref="UniProtKB/Swiss-Prot:O07605"
                     /translation="MKRIKFGLATQIFVGLILGVIVGVIWYGNPALPTYLQPIGDLFL
                     RLIKMIVIPIVVSSLIIGVAGAGNGKQVGKLGFRTILYFEIITTFAIILGLALANIFH
                     PGTGVNIHEAQKSDISQYVETEKEQSNKSVAETFLHIVPTNFFQSLVEGDLLAIICFT
                     VLFALGISAIGERGKPVLAFFEGVSHAMFHVVNLVMKVAPFGVFALIGVTVSKFGLGS
                     LISLGKLVGLVYVALAFFLIVIFGIVAKIAGISIFKFLAYMKDEILLAFSTSSSETVL
                     PRIMEKMEKIGCPKGIVSFVIPIGYTFNLDGSVLYQSIAALFLAQVYGIDLTIWHQIT
                     LVLVLMVTSKGMAAVPGTSFVVLLATLGTIGVPAEGLAFIAGVDRIMDMARTVVNLTG
                     NALAAVVMSKWEGMFNPAKAETVMSQSKTEQNATISG*"
     gene            complement(1078528..1079817)
                     /gene="gltT"
                     /locus_tag="BSU_10220"
                     /old_locus_tag="BSU10220"
     downshifts      complement(1078558)
                     /Source="Nicolas_upshifts"
                     /id="D555"
                     /incds=0
                     /nref=226
                     /ntot=280
                     /MaxReadThrough="2.99263"
                     /MaxDrop="7.79183"
                     /score="48.7726082"
                     /energy="-21.9"
                     /TU="U823"
                     /idTUdmin="U824"
                     /TUdmin=3
                     /isTUend="TRUE"
     S_feature       complement(1079818..1079918)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1097850_1097950_c"
                     /HighExp="C90, LoTm, LBGexp, Cold, UNK1, BC, dia5, Lbexp,
                     S1, T3.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S361"
     promotor_-10    complement(1079917..1079936)
                     /Source="Nicolas_upshift_promotors"
                     /id="U823"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig=1
                     /xcortree=2240
                     /SigmaFactorBS="tctggtgattatcataatgtcATTGAATattctttattttcg
                     AAATATAATTTACTATAGACgaattgatttcttatctattataatttgatctaatagt
                     g"
                     /listShort="S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1079918)
                     /Source="Nicolas_upshifts"
                     /id="U823"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig=1
                     /xcortree=2240
                     /SigmaFactorBS="tctggtgattatcataatgtcATTGAATattctttattttcg
                     AAATATAATTTACTATAGACgaattgatttcttatctattataatttgatctaatagt
                     g"
                     /listShort="S361, gltT"
                     /GFF_Attribute="listLong"
     S_feature       complement(1079920..1080056)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1097952_1098088_c"
                     /HighExp="M9-stat, T3.30H, T3.0H, T4.0H, T2.30H, T5.0H,
                     Cold, T2.0H, S0, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S362"
     promotor_-35    complement(1079951..1079957)
                     /Source="Nicolas_upshift_promotors"
                     /id="U823"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.556443556443556"
                     /psig=1
                     /xcortree=2240
                     /SigmaFactorBS="tctggtgattatcataatgtcATTGAATattctttattttcg
                     AAATATAATTTACTATAGACgaattgatttcttatctattataatttgatctaatagt
                     g"
                     /listShort="S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1080088..1080228)
                     /gene="yhfH"
                     /locus_tag="BSU_10230"
                     /old_locus_tag="BSU10230"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388904.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10230"
                     /db_xref="EnsemblGenomes-Tr:CAB12863"
                     /db_xref="InterPro:IPR025432"
                     /db_xref="SubtiList:BG13053"
                     /db_xref="UniProtKB/Swiss-Prot:O07606"
                     /translation="MVMLGKITEFFRNLPSKKCAECGKKIEEQHECYGNICNDCIKVN
                     DL*"
     gene            complement(1080088..1080228)
                     /gene="yhfH"
                     /locus_tag="BSU_10230"
                     /old_locus_tag="BSU10230"
     downshifts      complement(1080101)
                     /Source="Nicolas_upshifts"
                     /id="D556"
                     /incds=0
                     /nref=3
                     /ntot=16
                     /MaxReadThrough="5.70702"
                     /MaxDrop="4.73949"
                     /score="28.7665297"
                     /energy="-13.6"
                     /TU="U824"
                     /idTUdmin="U824"
                     /TUdmin="-1540"
                     /isTUend="FALSE"
     promotor_-10    complement(1080247..1080266)
                     /Source="Nicolas_upshift_promotors"
                     /id="U824"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.454545454545455"
                     /psig=1
                     /xcortree=433
                     /SigmaFactorBS="tcttgaaaaaagcatgttttaaacattgtatcaaaacagtTA
                     TTGATTtttgtaatctgtTATATTACAATGAAATCACTacaaaggggaaagagggatt
                     g"
                     /listShort="yhfH, S362, S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1080266)
                     /Source="Nicolas_upshifts"
                     /id="U824"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.454545454545455"
                     /psig=1
                     /xcortree=433
                     /SigmaFactorBS="tcttgaaaaaagcatgttttaaacattgtatcaaaacagtTA
                     TTGATTtttgtaatctgtTATATTACAATGAAATCACTacaaaggggaaagagggatt
                     g"
                     /listShort="yhfH, S362, S361, gltT"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1080279..1080286)
                     /Source="Nicolas_upshift_promotors"
                     /id="U824"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.454545454545455"
                     /psig=1
                     /xcortree=433
                     /SigmaFactorBS="tcttgaaaaaagcatgttttaaacattgtatcaaaacagtTA
                     TTGATTtttgtaatctgtTATATTACAATGAAATCACTacaaaggggaaagagggatt
                     g"
                     /listShort="yhfH, S362, S361, gltT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1080310..1080316
                     /Source="Nicolas_upshift_promotors"
                     /id="U825"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.621378621378621"
                     /psig="0.99100899100899"
                     /xcortree=1999
                     /SigmaFactorBS="tacaaaaatcaataactgttttgatacaatgtttaaaACATG
                     CTtttttcaagaaaaATGGGTATATTGAAGGAGGAccaatttttttgaaaagatagga
                     g"
                     /listShort="yhfI, yhfJ, yhfK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1080330..1080349
                     /Source="Nicolas_upshift_promotors"
                     /id="U825"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.621378621378621"
                     /psig="0.99100899100899"
                     /xcortree=1999
                     /SigmaFactorBS="tacaaaaatcaataactgttttgatacaatgtttaaaACATG
                     CTtttttcaagaaaaATGGGTATATTGAAGGAGGAccaatttttttgaaaagatagga
                     g"
                     /listShort="yhfI, yhfJ, yhfK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1080333
                     /Source="Nicolas_upshifts"
                     /id="U825"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.621378621378621"
                     /psig="0.99100899100899"
                     /xcortree=1999
                     /SigmaFactorBS="tacaaaaatcaataactgttttgatacaatgtttaaaACATG
                     CTtttttcaagaaaaATGGGTATATTGAAGGAGGAccaatttttttgaaaagatagga
                     g"
                     /listShort="yhfI, yhfJ, yhfK"
                     /GFF_Attribute="listLong"
     CDS             1080380..1081114
                     /gene="yhfI"
                     /locus_tag="BSU_10240"
                     /old_locus_tag="BSU10240"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-dependent hydrolase"
                     /protein_id="NP_388905.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10240"
                     /db_xref="EnsemblGenomes-Tr:CAB12864"
                     /db_xref="GOA:O07607"
                     /db_xref="InterPro:IPR001279"
                     /db_xref="InterPro:IPR036866"
                     /db_xref="SubtiList:BG13054"
                     /db_xref="UniProtKB/Swiss-Prot:O07607"
                     /translation="MKVTVIGCYGGFPAANEATSGYLFQSGDYSLLVDCGSAVLSKLF
                     GYVPAEKLDAVVLSHYHHDHIADIGPLQFAKQVGSFLGKGEHTLPIYGHDADIEQFQK
                     LTYKTHTKGIAYQPDQPLTAGPFTITFLKTIHPVTCYAMRITDGSHTVVYTADSSYQD
                     SFIPFSKDADLLISECNFYADQDGTSAGHMNSLEAGRIAKEAGAGELLLTHLPHFGVH
                     DNLRKEAKTVFNGEVNIAKSGFVWEG*"
     gene            1080380..1081114
                     /gene="yhfI"
                     /locus_tag="BSU_10240"
                     /old_locus_tag="BSU10240"
     CDS             1081127..1082122
                     /gene="lplJ"
                     /locus_tag="BSU_10250"
                     /old_locus_tag="BSU10250"
                     /EC_number="6.3.1.20"
                     /experiment="publication(s) with functional evidences,
                     PMID:21338420, 21338421"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 21338420, 21338421;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate-protein ligase"
                     /protein_id="NP_388906.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10250"
                     /db_xref="EnsemblGenomes-Tr:CAB12865"
                     /db_xref="GOA:O07608"
                     /db_xref="InterPro:IPR004143"
                     /db_xref="InterPro:IPR004562"
                     /db_xref="InterPro:IPR019491"
                     /db_xref="SubtiList:BG13055"
                     /db_xref="UniProtKB/Swiss-Prot:O07608"
                     /translation="MLFIDNQNINDPRINLAIEEYCVKHLDPEQQYLLFYVNQPSIII
                     GKNQNTIEEINTKYVEENGIIVVRRLSGGGAVYHDLGNLNFSFITKDDGDSFHNFKKF
                     TEPVIQALHQLGVEAELSGRNDIVVDGRKISGNAQFATKGRIFSHGTLMFDSAIDHVV
                     SALKVKKDKIESKGIKSIRSRVANISEFLDDKMTTEEFRSHLLRHIFNTNDVGNVPEY
                     KLTEKDWETIHQISKERYQNWDWNYGRSPKFNLNHSKRYPVGSIDLHLEVKKGKIEDC
                     KIFGDFFGVGDVSEIENLLVGKQYERSVIADVLEGVNLKHYFGNITKEDFLDLIY*"
     gene            1081127..1082122
                     /gene="lplJ"
                     /locus_tag="BSU_10250"
                     /old_locus_tag="BSU10250"
     CDS             1082187..1082831
                     /gene="yhfK"
                     /locus_tag="BSU_10260"
                     /old_locus_tag="BSU10260"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11790741; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NAD-binding epimerase / hydratase"
                     /protein_id="NP_388907.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10260"
                     /db_xref="EnsemblGenomes-Tr:CAB12866"
                     /db_xref="GOA:O07609"
                     /db_xref="InterPro:IPR016040"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13056"
                     /db_xref="UniProtKB/Swiss-Prot:O07609"
                     /translation="MKVFLIGANGQIGQRLVSLFQDNPDHSIRAMVRKEEQKASLEAA
                     GAEAVLANLEGSPEEIAAAAKGCDAIIFTAGSGGSTGYDKTLLVDLDGAAKAIEAAAI
                     AGIKRFIMVSALQAHNRENWNEALKPYYVAKHYADKILEASGLTYTIIRPGGLRNEPG
                     TGTVSAAKDLERGFISRDDVAKTVIASLDEKNTENRAFDLTEGDTPIAEALKKL*"
     gene            1082187..1082831
                     /gene="yhfK"
                     /locus_tag="BSU_10260"
                     /old_locus_tag="BSU10260"
     downshifts      1082819
                     /Source="Nicolas_upshifts"
                     /id="D557"
                     /incds=0
                     /nref=239
                     /ntot=258
                     /MaxReadThrough="0.56809"
                     /MaxDrop="6.84076"
                     /score="18.2092404"
                     /energy="-10"
                     /TU="NA"
                     /idTUdmin="U825"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1082859..1082862
                     /Source="Nicolas_upshift_promotors"
                     /id="U826"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=374
                     /SigmaFactorBS="aactatgacagtactgacactcagggctttttgctCTTGagt
                     gtttttttctgTTTCTCTATAATGGAGAAGAaagcttggcttcaataatgaatgacta
                     t"
                     /listShort="lcfB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1082877..1082896
                     /Source="Nicolas_upshift_promotors"
                     /id="U826"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=374
                     /SigmaFactorBS="aactatgacagtactgacactcagggctttttgctCTTGagt
                     gtttttttctgTTTCTCTATAATGGAGAAGAaagcttggcttcaataatgaatgacta
                     t"
                     /listShort="lcfB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1082884
                     /Source="Nicolas_upshifts"
                     /id="U826"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=374
                     /SigmaFactorBS="aactatgacagtactgacactcagggctttttgctCTTGagt
                     gtttttttctgTTTCTCTATAATGGAGAAGAaagcttggcttcaataatgaatgacta
                     t"
                     /listShort="lcfB"
                     /GFF_Attribute="listLong"
     CDS             1082948..1084489
                     /gene="lcfB"
                     /locus_tag="BSU_10270"
                     /old_locus_tag="BSU10270"
                     /EC_number="6.2.1.3"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:17189250, 21398533"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17189250, 21398533;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty-acid-CoA ligase (degradative)"
                     /protein_id="NP_388908.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10270"
                     /db_xref="EnsemblGenomes-Tr:CAB12867"
                     /db_xref="GOA:O07610"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR020459"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="SubtiList:BG13057"
                     /db_xref="UniProtKB/Swiss-Prot:O07610"
                     /translation="MNLVSKLEETASEKPDSIACRFKDHMMTYQELNEYIQRFADGLQ
                     EAGMEKGDHLALLLGNSPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAI
                     VGVSQLLPLYESMHESLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAK
                     QNQEPVPDDTAVILYTSGTTGKPKGAMLTHQNLYSNANDVAGYLGMDERDNVVCALPM
                     FHVFCLTVCMNAPLMSGATVLIEPQFSPASVFKLVKQQQATIFAGVPTMYNYLFQHEN
                     GKKDDFSSIRLCISGGASMPVALLTAFEEKFGVTILEGYGLSEASPVTCFNPFDRGRK
                     PGSIGTSILHVENKVVDPLGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALKDGWL
                     YTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQ
                     SGEAVKGYVVPKRSGVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRALR
                     DILPQ*"
     gene            1082948..1084489
                     /gene="lcfB"
                     /locus_tag="BSU_10270"
                     /old_locus_tag="BSU10270"
     downshifts      1084469
                     /Source="Nicolas_upshifts"
                     /id="D558"
                     /incds=0
                     /nref=5
                     /ntot=108
                     /MaxReadThrough="2.74134"
                     /MaxDrop="3.72638"
                     /score="15.3712924"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U826"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1084528..1084923)
                     /gene="yhfM"
                     /locus_tag="BSU_10280"
                     /old_locus_tag="BSU10280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein"
                     /protein_id="NP_388909.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10280"
                     /db_xref="EnsemblGenomes-Tr:CAB12868"
                     /db_xref="SubtiList:BG13058"
                     /db_xref="UniProtKB/Swiss-Prot:O07611"
                     /translation="MKKIVAAIVVIGLVFIAFFYLYSRSGDVYQSVDADLITLSSSGQ
                     EDIEIEKRQHVKDMLDIMNQGKQVKTEKTSAPDYEGTIKFHKDRYDSFRLWIDGSQQA
                     VFLKDGTYYKLSKNDTKALLNIIKKEAKD*"
     gene            complement(1084528..1084923)
                     /gene="yhfM"
                     /locus_tag="BSU_10280"
                     /old_locus_tag="BSU10280"
     downshifts      complement(1084545)
                     /Source="Nicolas_upshifts"
                     /id="D559"
                     /incds=0
                     /nref=46
                     /ntot=89
                     /MaxReadThrough="0.75539"
                     /MaxDrop="6.88759"
                     /score="17.4775611"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U827"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(1084943..1084954)
                     /Source="Nicolas_upshift_promotors"
                     /id="U827"
                     /multdbtbs="SigF"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1141
                     /SigmaFactorBS="caagctgtgttccgcacttttccacccttttaAGCATGGaaa
                     ccccgatcgctGGGAAAACTAACaatgtttggagtgatgcaaatgaaaaaaatagtgg
                     c"
                     /listShort="yhfM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1084947)
                     /Source="Nicolas_upshifts"
                     /id="U827"
                     /multdbtbs="SigF"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1141
                     /SigmaFactorBS="caagctgtgttccgcacttttccacccttttaAGCATGGaaa
                     ccccgatcgctGGGAAAACTAACaatgtttggagtgatgcaaatgaaaaaaatagtgg
                     c"
                     /listShort="yhfM"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1084969..1084975)
                     /Source="Nicolas_upshift_promotors"
                     /id="U827"
                     /multdbtbs="SigF"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1141
                     /SigmaFactorBS="caagctgtgttccgcacttttccacccttttaAGCATGGaaa
                     ccccgatcgctGGGAAAACTAACaatgtttggagtgatgcaaatgaaaaaaatagtgg
                     c"
                     /listShort="yhfM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1085008..1085011
                     /Source="Nicolas_upshift_promotors"
                     /id="U828"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.635364635364635"
                     /psig="0.785214785214785"
                     /xcortree=1404
                     /SigmaFactorBS="atcggggtttccatgcttaaaagggtggaaaagtgcggaaca
                     cagcttgGTTCtaagaatttgaattTATGATTACAATAGAAGTAAcgggttgatgtga
                     g"
                     /listShort="yhfN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1085019
                     /Source="Nicolas_upshifts"
                     /id="U828"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.635364635364635"
                     /psig="0.785214785214785"
                     /xcortree=1404
                     /SigmaFactorBS="atcggggtttccatgcttaaaagggtggaaaagtgcggaaca
                     cagcttgGTTCtaagaatttgaattTATGATTACAATAGAAGTAAcgggttgatgtga
                     g"
                     /listShort="yhfN"
                     /GFF_Attribute="listLong"
     promotor_-10    1085026..1085045
                     /Source="Nicolas_upshift_promotors"
                     /id="U828"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.635364635364635"
                     /psig="0.785214785214785"
                     /xcortree=1404
                     /SigmaFactorBS="atcggggtttccatgcttaaaagggtggaaaagtgcggaaca
                     cagcttgGTTCtaagaatttgaattTATGATTACAATAGAAGTAAcgggttgatgtga
                     g"
                     /listShort="yhfN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1085072..1086352
                     /gene="yhfN"
                     /locus_tag="BSU_10290"
                     /old_locus_tag="BSU10290"
                     /EC_number="3.4.24.84"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9015299; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane metalloprotease"
                     /protein_id="NP_388910.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10290"
                     /db_xref="EnsemblGenomes-Tr:CAB12869"
                     /db_xref="GOA:P40769"
                     /db_xref="InterPro:IPR001915"
                     /db_xref="InterPro:IPR027057"
                     /db_xref="InterPro:IPR032456"
                     /db_xref="SubtiList:BG11029"
                     /db_xref="UniProtKB/Swiss-Prot:P40769"
                     /translation="MRKWIAAAGLAYVLYGLFFYWYFFLSGDSAIPEAVKGTQADPAS
                     FMKPSELAVAEQYSNVKNFLFFIGVPLDWFLFFVLLVSGVSKKIKKWIEAAVPFRFLQ
                     TVGFVFVLSLITTLVTLPLDWIGYQVSLDYNISTQTTASWAKDQVISFWISFPIFTLC
                     VLVFYWLIKRHEKKWWLYAWLLTVPFSLFLFFIQPVIIDPLYNDFYPLKNKELESKIL
                     ELADEANIPADHVYEVNMSEKTNALNAYVTGIGANKRIVLWDTTLNKLDDSEILFIMG
                     HEMGHYVMKHVYIGLAGYLLVSLAGFYVIDKLYKRTVRLTRSMFHLEGRHDLAALPLL
                     LLLFSVLSFAVTPFSNAVSRYQENKADQYGIELTENREAAVKTFQDLAVTGLSQVDPP
                     VLVKIFRGSHPSIMERIQHAEKEENAPEHQDADK*"
     gene            1085072..1086352
                     /gene="yhfN"
                     /locus_tag="BSU_10290"
                     /old_locus_tag="BSU10290"
     promotor_-10    complement(1085499..1085518)
                     /Source="Nicolas_upshift_promotors"
                     /id="U829"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig="0.974025974025974"
                     /xcortree=1821
                     /SigmaFactorBS="tcagccaataaaaaacgagaacgcaaagcgtaaaGATTGGaa
                     agctgatccaaaaGCTGATAACCTGATCCTTAGcccagctggccgttgtctgtgtgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1085513)
                     /Source="Nicolas_upshifts"
                     /id="U829"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig="0.974025974025974"
                     /xcortree=1821
                     /SigmaFactorBS="tcagccaataaaaaacgagaacgcaaagcgtaaaGATTGGaa
                     agctgatccaaaaGCTGATAACCTGATCCTTAGcccagctggccgttgtctgtgtgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1085534..1085539)
                     /Source="Nicolas_upshift_promotors"
                     /id="U829"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig="0.974025974025974"
                     /xcortree=1821
                     /SigmaFactorBS="tcagccaataaaaaacgagaacgcaaagcgtaaaGATTGGaa
                     agctgatccaaaaGCTGATAACCTGATCCTTAGcccagctggccgttgtctgtgtgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1086339
                     /Source="Nicolas_upshifts"
                     /id="D560"
                     /incds=0
                     /nref=2
                     /ntot=57
                     /MaxReadThrough="3.82026"
                     /MaxDrop="3.6342"
                     /score="6.45541384"
                     /energy="-12.7"
                     /TU="U828"
                     /idTUdmin="U828"
                     /TUdmin="-132"
                     /isTUend="FALSE"
     downshifts      complement(1086389)
                     /Source="Nicolas_upshifts"
                     /id="D561"
                     /incds=0
                     /nref=129
                     /ntot=219
                     /MaxReadThrough="-0.11848"
                     /MaxDrop="9.02627"
                     /score="-6.76069514"
                     /energy="-7.8"
                     /TU="NA"
                     /idTUdmin="U830"
                     /TUdmin=4
                     /isTUend="TRUE"
     CDS             complement(1086391..1087536)
                     /gene="aprE"
                     /locus_tag="BSU_10300"
                     /old_locus_tag="BSU10300"
                     /EC_number="3.4.21.62"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3108260, 9811547, 12950930, 14688235, 15205417,
                     17666034, 19710937, 26728191"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3108260, 9811547,
                     12950930, 14688235, 15205417, 17666034, 19710937,
                     26728191; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="serine alkaline protease (Ca(2+)-dependent
                     subtilisin E)"
                     /protein_id="NP_388911.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10300"
                     /db_xref="EnsemblGenomes-Tr:CAB12870"
                     /db_xref="GOA:P04189"
                     /db_xref="InterPro:IPR000209"
                     /db_xref="InterPro:IPR009020"
                     /db_xref="InterPro:IPR010259"
                     /db_xref="InterPro:IPR015500"
                     /db_xref="InterPro:IPR022398"
                     /db_xref="InterPro:IPR023827"
                     /db_xref="InterPro:IPR023828"
                     /db_xref="InterPro:IPR034202"
                     /db_xref="InterPro:IPR036852"
                     /db_xref="InterPro:IPR037045"
                     /db_xref="PDB:1SCJ"
                     /db_xref="PDB:3WHI"
                     /db_xref="SubtiList:BG10190"
                     /db_xref="UniProtKB/Swiss-Prot:P04189"
                     /translation="MRSKKLWISLLFALTLIFTMAFSNMSAQAAGKSSTEKKYIVGFK
                     QTMSAMSSAKKKDVISEKGGKVQKQFKYVNAAAATLDEKAVKELKKDPSVAYVEEDHI
                     AHEYAQSVPYGISQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLNVRGGASFVPSE
                     TNPYQDGSSHGTHVAGTIAALNNSIGVLGVAPSASLYAVKVLDSTGSGQYSWIINGIE
                     WAISNNMDVINMSLGGPTGSTALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAK
                     YPSTIAVGAVNSSNQRASFSSAGSELDVMAPGVSIQSTLPGGTYGAYNGTSMATPHVA
                     GAAALILSKHPTWTNAQVRDRLESTATYLGNSFYYGKGLINVQAAAQ*"
     gene            complement(1086391..1087536)
                     /gene="aprE"
                     /locus_tag="BSU_10300"
                     /old_locus_tag="BSU10300"
     S_feature       complement(1087537..1087603)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1105569_1105635_c"
                     /HighExp="BC, T5.0H, LoTm, Sw, T4.0H, T3.30H, S1, T3.0H,
                     S2, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S363"
     promotor_-10    complement(1087592..1087611)
                     /Source="Nicolas_upshift_promotors"
                     /id="U830"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=468
                     /SigmaFactorBS="atacctaaatagagataaaatcatctcaaaaaaatgggTCTA
                     CtaaaatattattccaTCTATTACAATAAATTCACAgaatagtcttttaagtaagtct
                     a"
                     /listShort="S363, aprE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1087609)
                     /Source="Nicolas_upshifts"
                     /id="U830"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=468
                     /SigmaFactorBS="atacctaaatagagataaaatcatctcaaaaaaatgggTCTA
                     CtaaaatattattccaTCTATTACAATAAATTCACAgaatagtcttttaagtaagtct
                     a"
                     /listShort="S363, aprE"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1087627..1087631)
                     /Source="Nicolas_upshift_promotors"
                     /id="U830"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=468
                     /SigmaFactorBS="atacctaaatagagataaaatcatctcaaaaaaatgggTCTA
                     CtaaaatattattccaTCTATTACAATAAATTCACAgaatagtcttttaagtaagtct
                     a"
                     /listShort="S363, aprE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1087916..1087923
                     /Source="Nicolas_upshift_promotors"
                     /id="U831"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.983016983016983"
                     /xcortree=2175
                     /SigmaFactorBS="ttcaaagcatgatgataaaagtattctgaaaaataaACTTTA
                     CAgaaaagggatagaaTGAAAAAATTATTGAGAGGGaggaagaaataagatgaacatt
                     c"
                     /listShort="yhfO, yhfP, S364"
                     /listLong="yhfQ"
                     /label="promotor_-35"
     promotor_-10    1087938..1087957
                     /Source="Nicolas_upshift_promotors"
                     /id="U831"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.983016983016983"
                     /xcortree=2175
                     /SigmaFactorBS="ttcaaagcatgatgataaaagtattctgaaaaataaACTTTA
                     CAgaaaagggatagaaTGAAAAAATTATTGAGAGGGaggaagaaataagatgaacatt
                     c"
                     /listShort="yhfO, yhfP, S364"
                     /listLong="yhfQ"
                     /label="promotor_-10"
     upshifts        1087940
                     /Source="Nicolas_upshifts"
                     /id="U831"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.854145854145854"
                     /psig="0.983016983016983"
                     /xcortree=2175
                     /SigmaFactorBS="ttcaaagcatgatgataaaagtattctgaaaaataaACTTTA
                     CAgaaaagggatagaaTGAAAAAATTATTGAGAGGGaggaagaaataagatgaacatt
                     c"
                     /listShort="yhfO, yhfP, S364"
                     /listLong="yhfQ"
     CDS             1087971..1088420
                     /gene="yhfO"
                     /locus_tag="BSU_10310"
                     /old_locus_tag="BSU10310"
                     /EC_number="2.3.1.-"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11717295; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_388912.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10310"
                     /db_xref="EnsemblGenomes-Tr:CAB12871"
                     /db_xref="GOA:O07614"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13059"
                     /db_xref="UniProtKB/Swiss-Prot:O07614"
                     /translation="MNIRQAKTSDAAAIAPLFNQYREFYRQASDLQGAEAFLKARLEN
                     HESVILIAEENGEFIGFTQLYPTFSSVSMKRIYILNDLFVVPHARTKGAGGRLLSAAK
                     DYAGQNGAKCLTLQTEHHNRKARSLYEQNGYEEDTGFVHYCLNVPAK*"
     gene            1087971..1088420
                     /gene="yhfO"
                     /locus_tag="BSU_10310"
                     /old_locus_tag="BSU10310"
     promotor_-35    1088436..1088443
                     /Source="Nicolas_upshift_promotors"
                     /id="U832"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2061
                     /SigmaFactorBS="tgtgccggcgaagtgaaaatggcggcttgatGATTTGGTttt
                     ttgaacgttctTCGGTTACGATATAAATGAAaaggagtgtgccgaatgtcaacgttat
                     t"
                     /listShort="yhfP, S364, yhfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1088458..1088477
                     /Source="Nicolas_upshift_promotors"
                     /id="U832"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2061
                     /SigmaFactorBS="tgtgccggcgaagtgaaaatggcggcttgatGATTTGGTttt
                     ttgaacgttctTCGGTTACGATATAAATGAAaaggagtgtgccgaatgtcaacgttat
                     t"
                     /listShort="yhfP, S364, yhfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1088465
                     /Source="Nicolas_upshifts"
                     /id="U832"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.95004995004995"
                     /psig=1
                     /xcortree=2061
                     /SigmaFactorBS="tgtgccggcgaagtgaaaatggcggcttgatGATTTGGTttt
                     ttgaacgttctTCGGTTACGATATAAATGAAaaggagtgtgccgaatgtcaacgttat
                     t"
                     /listShort="yhfP, S364, yhfQ"
                     /GFF_Attribute="listLong"
     CDS             1088492..1089484
                     /gene="yhfP"
                     /locus_tag="BSU_10320"
                     /old_locus_tag="BSU10320"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9643546, 12057962;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388913.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10320"
                     /db_xref="EnsemblGenomes-Tr:CAB12872"
                     /db_xref="GOA:O07615"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR013154"
                     /db_xref="InterPro:IPR014188"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:1TT7"
                     /db_xref="PDB:1Y9E"
                     /db_xref="SubtiList:BG13060"
                     /db_xref="UniProtKB/Swiss-Prot:O07615"
                     /translation="MSTLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGIN
                     YKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGL
                     SEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGAT
                     GGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQW
                     QGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYC
                     PMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL*"
     gene            1088492..1089484
                     /gene="yhfP"
                     /locus_tag="BSU_10320"
                     /old_locus_tag="BSU10320"
     downshifts      1089485
                     /Source="Nicolas_upshifts"
                     /id="D562"
                     /incds=0
                     /nref=1
                     /ntot=37
                     /MaxReadThrough="4.4421"
                     /MaxDrop="2.9095"
                     /score="14.183693"
                     /energy="-15.3"
                     /TU="U831,U832"
                     /idTUdmin="U831"
                     /TUdmin="-154"
                     /isTUend="FALSE"
     S_feature       1089530..1089640
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1107562_1107672"
                     /HighExp="Etha, dia15, LoTm, Salt, H2O2, LBGexp, Diami,
                     Paraq, dia5, Lbexp"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.983"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S364"
     promotor_-35    1089618..1089625
                     /Source="Nicolas_upshift_promotors"
                     /id="U833"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.76023976023976"
                     /psig=1
                     /xcortree=2107
                     /SigmaFactorBS="gtaagccgaactttctcttctcattttaaaaataatTGGTGA
                     TAatgattctcattccgTGTTATACTACTCTTGGACAtcttaaccatagaaactacca
                     a"
                     /listShort="yhfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1089641..1089660
                     /Source="Nicolas_upshift_promotors"
                     /id="U833"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.76023976023976"
                     /psig=1
                     /xcortree=2107
                     /SigmaFactorBS="gtaagccgaactttctcttctcattttaaaaataatTGGTGA
                     TAatgattctcattccgTGTTATACTACTCTTGGACAtcttaaccatagaaactacca
                     a"
                     /listShort="yhfQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1089642
                     /Source="Nicolas_upshifts"
                     /id="U833"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.76023976023976"
                     /psig=1
                     /xcortree=2107
                     /SigmaFactorBS="gtaagccgaactttctcttctcattttaaaaataatTGGTGA
                     TAatgattctcattccgTGTTATACTACTCTTGGACAtcttaaccatagaaactacca
                     a"
                     /listShort="yhfQ"
                     /GFF_Attribute="listLong"
     CDS             1089701..1090672
                     /gene="yhfQ"
                     /locus_tag="BSU_10330"
                     /old_locus_tag="BSU10330"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12354229, 16672620,
                     20147287; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="iron(III) siderophore-binding lipoprotein"
                     /protein_id="NP_388914.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10330"
                     /db_xref="EnsemblGenomes-Tr:CAB12873"
                     /db_xref="GOA:C0SP94"
                     /db_xref="InterPro:IPR002491"
                     /db_xref="SubtiList:BG13061"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP94"
                     /translation="MKKTLIILTVLLLSVLTAACSSSSGNQNSKEHKVAVTHDLGKTN
                     VPEHPKRVVVLELGFIDTLLDLGITPVGVADDNKAKQLINKDVLKKIDGYTSVGTRSQ
                     PSMEKIASLKPDLIIADTTRHKKVYDQLKKIAPTIALNNLNADYQDTIDASLTIAKAV
                     GKEKEMEKKLTAHEEKLSETKQKISANSQSVLLIGNTNDTIMARDENFFTSRLLTQVG
                     YRYAISTSGNSDSSNGGDSVNMKMTLEQLLKTDPDVIILMTGKTDDLDADGKRPIEKN
                     VLWKKLKAVKNGHVYHVDRAVWSLRRSVDGANAILDELQKEMPAAKK*"
     gene            1089701..1090672
                     /gene="yhfQ"
                     /locus_tag="BSU_10330"
                     /old_locus_tag="BSU10330"
     downshifts      1090651
                     /Source="Nicolas_upshifts"
                     /id="D563"
                     /incds=0
                     /nref=172
                     /ntot=251
                     /MaxReadThrough="2.22013"
                     /MaxDrop="5.6726"
                     /score="27.9181244"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U833"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1090704..1091285)
                     /gene="phoE"
                     /locus_tag="BSU_10340"
                     /old_locus_tag="BSU10340"
                     /EC_number="3.1.3.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10869096, 11827481, 12870714, 17693564"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10869096, 11827481,
                     12870714, 17693564; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous phosphatase; putative
                     (phosphoglycerate) mutase"
                     /protein_id="NP_388915.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10340"
                     /db_xref="EnsemblGenomes-Tr:CAB12874"
                     /db_xref="GOA:O07617"
                     /db_xref="InterPro:IPR001345"
                     /db_xref="InterPro:IPR013078"
                     /db_xref="InterPro:IPR029033"
                     /db_xref="SubtiList:BG13062"
                     /db_xref="UniProtKB/Swiss-Prot:O07617"
                     /translation="MTAVCLVRHGETDWNLQQKCQGKTDIPLNATGERQARETGEYVK
                     DFSWDIIVTSPLKRAKRTAEIINEYLHLPIVEMDDFKERDYGDAEGMPLEERTKRYPD
                     NIYPNMETLEELTDRLMGGLAKVNQAYPNKKVLIVAHGAAIHALLTEISGGDPELQST
                     RLVNACLSNIEFAEEKWRIKDYNINSHLSGFIK*"
     gene            complement(1090704..1091285)
                     /gene="phoE"
                     /locus_tag="BSU_10340"
                     /old_locus_tag="BSU10340"
     downshifts      complement(1090727)
                     /Source="Nicolas_upshifts"
                     /id="D564"
                     /incds=0
                     /nref=218
                     /ntot=256
                     /MaxReadThrough="1.23197"
                     /MaxDrop="6.359"
                     /score="28.9228703"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U834"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(1091309..1091328)
                     /Source="Nicolas_upshift_promotors"
                     /id="U834"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.370629370629371"
                     /psig="0.998001998001998"
                     /xcortree=1973
                     /SigmaFactorBS="ctttattatttgaagttcttgcataggctttttcATAGgaca
                     cacgctttcgaTTTAGTATAATAGCGATATGaataaagtcaggaaggggattttatga
                     c"
                     /listShort="phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1091321)
                     /Source="Nicolas_upshifts"
                     /id="U834"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.370629370629371"
                     /psig="0.998001998001998"
                     /xcortree=1973
                     /SigmaFactorBS="ctttattatttgaagttcttgcataggctttttcATAGgaca
                     cacgctttcgaTTTAGTATAATAGCGATATGaataaagtcaggaaggggattttatga
                     c"
                     /listShort="phoE"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1091344..1091347)
                     /Source="Nicolas_upshift_promotors"
                     /id="U834"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.370629370629371"
                     /psig="0.998001998001998"
                     /xcortree=1973
                     /SigmaFactorBS="ctttattatttgaagttcttgcataggctttttcATAGgaca
                     cacgctttcgaTTTAGTATAATAGCGATATGaataaagtcaggaaggggattttatga
                     c"
                     /listShort="phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1091356..1092450)
                     /gene="yhfS"
                     /locus_tag="BSU_10350"
                     /old_locus_tag="BSU10350"
                     /EC_number="2.3.1.9"
                     /experiment="publication(s) with functional evidences,
                     PMID:12368242, 23840410"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12368242, 23840410;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="NP_388916.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10350"
                     /db_xref="EnsemblGenomes-Tr:CAB12875"
                     /db_xref="GOA:O07618"
                     /db_xref="InterPro:IPR002155"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="InterPro:IPR020613"
                     /db_xref="InterPro:IPR020616"
                     /db_xref="InterPro:IPR020617"
                     /db_xref="SubtiList:BG13063"
                     /db_xref="UniProtKB/Swiss-Prot:O07618"
                     /translation="MNAVIVDAKRTIFGNQNGLLKPFLPEDLAAPIIRCLSRKLEDQV
                     DEVILGNATGRGGNLARLSALQAGLPLSVPGMTIDRQCGSGLEAVRYACSLIQAGAGT
                     MYIAGGSESSSQSPFSERARFSPDAIGDPDMGIAAEYTAARYSISRSMQDEYALLSHQ
                     RSRNAHDEGFYREEVVALGELETDEAFLKTRPIEAIIPRAKPVFDTSSGTVTAANSSG
                     IADGAAALLVMEEEKAAALGLKPVLRFIGSAVSGIHPNFPPAAPVVAIRQLLHTHDVT
                     PDDIDLFEINEAFAVKICVCSQELGIPFSKINVRGGALALGHPYGASGAALVTRLFYE
                     AKRRPDCQYAVAAIGSGGGIGLALLFEVLA*"
     gene            complement(1091356..1092450)
                     /gene="yhfS"
                     /locus_tag="BSU_10350"
                     /old_locus_tag="BSU10350"
     CDS             complement(1092447..1093886)
                     /gene="yhfT"
                     /locus_tag="BSU_10360"
                     /old_locus_tag="BSU10360"
                     /EC_number="6.2.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12368242, 28032445,
                     28414710; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative long-chain fatty-acid-CoA ligase
                     (proofreading for biotin synthesis)"
                     /protein_id="NP_388917.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10360"
                     /db_xref="EnsemblGenomes-Tr:CAB12876"
                     /db_xref="GOA:O07619"
                     /db_xref="InterPro:IPR000873"
                     /db_xref="InterPro:IPR020845"
                     /db_xref="InterPro:IPR025110"
                     /db_xref="SubtiList:BG13064"
                     /db_xref="UniProtKB/Swiss-Prot:O07619"
                     /translation="MTITHTYSSTAETSPGRVAIQTESEQITYHDWDRLVSQTANWLR
                     SQPSMPNRVAILLPNSLAFLQLFAGAAAAGCTAIPIDTRWSPAECKERLSISNADLVV
                     TLAFFKNKLTDSQTPVVLLDNCMADISEAAADPLPTIDPEHPFYMGFTSGSTGKPKAF
                     TRSHRSWMESFTCTETDFSISSDDKVLIPGALMSSHFLYGAVSTLFLGGTVCLLKKFS
                     PAKAKEWLCRESISVLYTVPTMTDALARIEGFPDSPVKIISSGADWPAESKKKLAAAW
                     PHLKLYDFYGTSELSFVTFSSPEDSKRKPHSAGRPFHNVRIEIRNAGGERCQPGEIGK
                     IFVKSPMRFSGYVNGSTPDEWMTVDDMGYVDEEGFLYISGRENGMIVYGGLNIFPEEI
                     ERVLLACPEVESAAVVGIPDEYWGEIAVAVILGNANARTLKAWCKQKLASYKIPKKWV
                     FADSLPETSSGKIARSRVKKWLEESVQYK*"
     gene            complement(1092447..1093886)
                     /gene="yhfT"
                     /locus_tag="BSU_10360"
                     /old_locus_tag="BSU10360"
     CDS             complement(1093893..1094453)
                     /gene="bioY"
                     /locus_tag="BSU_10370"
                     /old_locus_tag="BSU10370"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12368242, 15849754,
                     16850406, 18931129, 23709504; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter"
                     /protein_id="NP_388918.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10370"
                     /db_xref="EnsemblGenomes-Tr:CAB12877"
                     /db_xref="GOA:O07620"
                     /db_xref="InterPro:IPR003784"
                     /db_xref="SubtiList:BG13065"
                     /db_xref="UniProtKB/Swiss-Prot:O07620"
                     /translation="MLKLIDMMHIAIFTALMAVLGFMPPLFLSFTPVPITLQTLGVML
                     AGSILRPKSAFLSQLVFLLLVAFGAPLLPGGRGGFGVFFGPSAGFLIAYPLASWLISL
                     AANRLRKVTVLRLFFTHIVFGIIFIYLLGIPVQAFIMHIDLSQAAFMSLAYVPGDLIK
                     AAVSAFLAIKITQALSLSDTMFTKGG*"
     gene            complement(1093893..1094453)
                     /gene="bioY"
                     /locus_tag="BSU_10370"
                     /old_locus_tag="BSU10370"
     misc_feature    complement(1093903..1093922)
                     /Source="Nicolas_upshift_promotors"
                     /id="U835"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.585414585414585"
                     /psig="0.97902097902098"
                     /xcortree=2231
                     /SigmaFactorBS="aaaagcggctgtatctgcatttctggcgataaaaatcactca
                     agccttgtctcttTCTGATACGATGTTTACAAAaggaggatgacaatacatgacaatt
                     a"
                     /listShort="yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1093917)
                     /Source="Nicolas_upshifts"
                     /id="U835"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.585414585414585"
                     /psig="0.97902097902098"
                     /xcortree=2231
                     /SigmaFactorBS="aaaagcggctgtatctgcatttctggcgataaaaatcactca
                     agccttgtctcttTCTGATACGATGTTTACAAAaggaggatgacaatacatgacaatt
                     a"
                     /listShort="yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1094478..1094497)
                     /Source="Nicolas_upshift_promotors"
                     /id="U836"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.999000999001"
                     /xcortree=2919
                     /SigmaFactorBS="ttgcgttcattatgtaaacttaaattaaaaatcAGTTGACAt
                     aataattacctgcATTTATTGTATAACCATATTtgattactttttggaggatttcaca
                     t"
                     /listShort="bioY, yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1094492)
                     /Source="Nicolas_upshifts"
                     /id="U836"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.999000999001"
                     /xcortree=2919
                     /SigmaFactorBS="ttgcgttcattatgtaaacttaaattaaaaatcAGTTGACAt
                     aataattacctgcATTTATTGTATAACCATATTtgattactttttggaggatttcaca
                     t"
                     /listShort="bioY, yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1094512..1094519)
                     /Source="Nicolas_upshift_promotors"
                     /id="U836"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.977022977022977"
                     /psig="0.999000999001"
                     /xcortree=2919
                     /SigmaFactorBS="ttgcgttcattatgtaaacttaaattaaaaatcAGTTGACAt
                     aataattacctgcATTTATTGTATAACCATATTtgattactttttggaggatttcaca
                     t"
                     /listShort="bioY, yhfT, yhfS, phoE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1094588..1095886)
                     /gene="hemAT"
                     /locus_tag="BSU_10380"
                     /old_locus_tag="BSU10380"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11481493, 12657801, 12962628, 15033535, 16819829,
                     17003124, 22528495, 22564695"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11481493, 12657801,
                     12962628, 15033535, 16819829, 17003124, 22528495,
                     22564695; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="heme-based dioxygen sensor"
                     /protein_id="NP_388919.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10380"
                     /db_xref="EnsemblGenomes-Tr:CAB12878"
                     /db_xref="GOA:O07621"
                     /db_xref="InterPro:IPR004089"
                     /db_xref="InterPro:IPR009050"
                     /db_xref="PDB:1OR4"
                     /db_xref="PDB:1OR6"
                     /db_xref="SubtiList:BG13066"
                     /db_xref="UniProtKB/Swiss-Prot:O07621"
                     /translation="MLFKKDRKQETAYFSDSNGQQKNRIQLTNKHADVKKQLKMVRLG
                     DAELYVLEQLQPLIQENIVNIVDAFYKNLDHESSLMDIINDHSSVDRLKQTLKRHIQE
                     MFAGVIDDEFIEKRNRIASIHLRIGLLPKWYMGAFQELLLSMIDIYEASITNQQELLK
                     AIKATTKILNLEQQLVLEAFQSEYNQTRDEQEEKKNLLHQKIQETSGSIANLFSETSR
                     SVQELVDKSEGISQASKAGTVTSSTVEEKSIGGKKELEVQQKQMNKIDTSLVQIEKEM
                     VKLDEIAQQIEKIFGIVTGIAEQTNLLSLNASIESARAGEHGKGFAVVANEVRKLSED
                     TKKTVSTVSELVNNTNTQINIVSKHIKDVNELVSESKEKMTQINRLFDEIVHSMKISK
                     EQSGKIDVDLQAFLGGLQEVSRAVSHVAASVDSLVILTEE*"
     gene            complement(1094588..1095886)
                     /gene="hemAT"
                     /locus_tag="BSU_10380"
                     /old_locus_tag="BSU10380"
     downshifts      complement(1094599)
                     /Source="Nicolas_upshifts"
                     /id="D565"
                     /incds=0
                     /nref=209
                     /ntot=243
                     /MaxReadThrough="2.70691"
                     /MaxDrop="6.97357"
                     /score="5.86442746"
                     /energy="-6.9"
                     /TU="NA"
                     /idTUdmin="U837"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(1095940..1095958)
                     /Source="Nicolas_upshift_promotors"
                     /id="U837"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2810
                     /SigmaFactorBS="tttttcaaatatttttcatctgcagCTTCATTcatgtttccc
                     ttgGCCGATAAAAAAGAAAAAGgcttaaaaagccaaaaagtaaaaattatatttttcc
                     c"
                     /listShort="hemAT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1095943)
                     /Source="Nicolas_upshifts"
                     /id="U837"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2810
                     /SigmaFactorBS="tttttcaaatatttttcatctgcagCTTCATTcatgtttccc
                     ttgGCCGATAAAAAAGAAAAAGgcttaaaaagccaaaaagtaaaaattatatttttcc
                     c"
                     /listShort="hemAT"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1095972..1095978)
                     /Source="Nicolas_upshift_promotors"
                     /id="U837"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2810
                     /SigmaFactorBS="tttttcaaatatttttcatctgcagCTTCATTcatgtttccc
                     ttgGCCGATAAAAAAGAAAAAGgcttaaaaagccaaaaagtaaaaattatatttttcc
                     c"
                     /listShort="hemAT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1096025..1097554)
                     /gene="yhfW"
                     /locus_tag="BSU_10390"
                     /old_locus_tag="BSU10390"
                     /EC_number="1.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase with Rieske [2Fe-2S]
                     center"
                     /protein_id="NP_388920.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10390"
                     /db_xref="EnsemblGenomes-Tr:CAB12879"
                     /db_xref="GOA:O07622"
                     /db_xref="InterPro:IPR005805"
                     /db_xref="InterPro:IPR006076"
                     /db_xref="InterPro:IPR017941"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="InterPro:IPR036922"
                     /db_xref="SubtiList:BG13067"
                     /db_xref="UniProtKB/Swiss-Prot:O07622"
                     /translation="MANQHFAKEAPETYWKTSTDLPSFPALQEDTECDVTIIGGGITG
                     ITTAYELTKRGFRVVLIEANQVLNGTTAHTTAKVTAQHDMIYDEFIRHFGLNHARLYY
                     EANQNAIDYIKGIVDEHQIDCEWIEQDAYLYTANENAVQKIHTEHEAYTKLGIERDLI
                     KDLPIPLGSKLALVMKNQAQFHPLQYLKALLEQIVQKGGRIYEETVALDIKKGERPEV
                     VTKSRHAIKSRFIICCSHFPFYDGGGLYAARMYSDRSYVLAIKPKIEYPEGMYLSIDQ
                     PSVALRYTVVNGEKLILFSGVSHKTGQGKAMSTHYETLRQLAESTIGIESIPYYWSTQ
                     DLVTIDKIPFIGPMSENEDNILVATGFKKWGMTSSAVAATLLSDLVEKKENPYESIFT
                     PSRFHLNPGLQKVISYNADVAKHLIKGKLEKPDVQFEDISPGEGKAVTINGRRAGAFR
                     DETGCLHLVDTTCTHLGCEVEWNDSEHTWDCPCHGSRFKPSGEVVEGPAIKPLKQIDL
                     D*"
     gene            complement(1096025..1097554)
                     /gene="yhfW"
                     /locus_tag="BSU_10390"
                     /old_locus_tag="BSU10390"
     promotor_-10    complement(1097581..1097599)
                     /Source="Nicolas_upshift_promotors"
                     /id="U838"
                     /multdbtbs="SigF"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.84015984015984"
                     /psig="0.84015984015984"
                     /xcortree=1075
                     /SigmaFactorBS="ttcaaccttattatgttatgaacaatgcctgcTTCCTAtgta
                     tgaaaagataGAATATGGAAAAATTAAGAataaatctgattggaggtataacggcttg
                     g"
                     /listShort="yhfW, hemAT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1097591)
                     /Source="Nicolas_upshifts"
                     /id="U838"
                     /multdbtbs="SigF"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.84015984015984"
                     /psig="0.84015984015984"
                     /xcortree=1075
                     /SigmaFactorBS="ttcaaccttattatgttatgaacaatgcctgcTTCCTAtgta
                     tgaaaagataGAATATGGAAAAATTAAGAataaatctgattggaggtataacggcttg
                     g"
                     /listShort="yhfW, hemAT"
                     /GFF_Attribute="listLong"
     promotor_-35    1097610..1097615
                     /Source="Nicolas_upshift_promotors"
                     /id="U839"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1100
                     /SigmaFactorBS="ccaatcagatttattcttaatttttccatattctatcttttc
                     aTACATAggaagcaggcattgtTCATAACATAATAAGGTTGaaaaggagtgatttcat
                     t"
                     /listShort="yhxC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(1097614..1097619)
                     /Source="Nicolas_upshift_promotors"
                     /id="U838"
                     /multdbtbs="SigF"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.84015984015984"
                     /psig="0.84015984015984"
                     /xcortree=1075
                     /SigmaFactorBS="ttcaaccttattatgttatgaacaatgcctgcTTCCTAtgta
                     tgaaaagataGAATATGGAAAAATTAAGAataaatctgattggaggtataacggcttg
                     g"
                     /listShort="yhfW, hemAT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1097627
                     /Source="Nicolas_upshifts"
                     /id="U839"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1100
                     /SigmaFactorBS="ccaatcagatttattcttaatttttccatattctatcttttc
                     aTACATAggaagcaggcattgtTCATAACATAATAAGGTTGaaaaggagtgatttcat
                     t"
                     /listShort="yhxC"
                     /GFF_Attribute="listLong"
     promotor_-10    1097631..1097649
                     /Source="Nicolas_upshift_promotors"
                     /id="U839"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=1100
                     /SigmaFactorBS="ccaatcagatttattcttaatttttccatattctatcttttc
                     aTACATAggaagcaggcattgtTCATAACATAATAAGGTTGaaaaggagtgatttcat
                     t"
                     /listShort="yhxC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1097666..1098523
                     /gene="yhxC"
                     /locus_tag="BSU_10400"
                     /old_locus_tag="BSU10400"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 18643936, 25720121;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388921.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10400"
                     /db_xref="EnsemblGenomes-Tr:CAB12880"
                     /db_xref="GOA:P40397"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11058"
                     /db_xref="UniProtKB/Swiss-Prot:P40397"
                     /translation="MANQKKKTLPPQHQNQQPGFEYLMDPRPVFDKPKKAKKLEGKTA
                     IITGGDSGIGRAVSVLFAKEGANVVIVYLNEHQDAEETKQYVEKEGVKCLLIAGDVGD
                     EAFCNDVVGQASQVFPSIDILVNNAAEQHVQPSIEKITSHQLIRTFQTNIFSMFYLTK
                     AVLPHLKKGSSIINTASITAYKGNKTLIDYSATKGAIVTFTRSLSQSLVQQGIRVNAV
                     APGPIWTPLIPASFAAKDVEVFGSDVPMERPGQPVEVAPSYLYLASDDSTYVTGQTIH
                     VNGGTIVNG*"
     gene            1097666..1098523
                     /gene="yhxC"
                     /locus_tag="BSU_10400"
                     /old_locus_tag="BSU10400"
     downshifts      1098505
                     /Source="Nicolas_upshifts"
                     /id="D566"
                     /incds=0
                     /nref=10
                     /ntot=36
                     /MaxReadThrough="2.65833"
                     /MaxDrop="4.80135"
                     /score="-8.69335909"
                     /energy="-4.5"
                     /TU="NA"
                     /idTUdmin="U839"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1098551..1098784)
                     /gene="yhzC"
                     /locus_tag="BSU_10410"
                     /old_locus_tag="BSU10410"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388922.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10410"
                     /db_xref="EnsemblGenomes-Tr:CAB12881"
                     /db_xref="InterPro:IPR014957"
                     /db_xref="SubtiList:BG13087"
                     /db_xref="UniProtKB/Swiss-Prot:O31594"
                     /translation="MKEKKSYTELMKSRNTQKTKEFDVTMTDIYIQMVLDESLYNRRL
                     AMLTDQINKALDEKDKDAFLTLSKEYAALKQSE*"
     gene            complement(1098551..1098784)
                     /gene="yhzC"
                     /locus_tag="BSU_10410"
                     /old_locus_tag="BSU10410"
     downshifts      complement(1098584)
                     /Source="Nicolas_upshifts"
                     /id="D567"
                     /incds=0
                     /nref=191
                     /ntot=247
                     /MaxReadThrough="3.34616"
                     /MaxDrop="7.00218"
                     /score="21.4902337"
                     /energy="-12.3"
                     /TU="U841"
                     /idTUdmin="U844"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     promotor_-10    complement(1098801..1098820)
                     /Source="Nicolas_upshift_promotors"
                     /id="U841"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig="0.999000999001"
                     /xcortree=2872
                     /SigmaFactorBS="atagattgccaagtattagttgtctaaaaattataaaaattT
                     ATTGATTttttcgaccgttatCCATATACTATAAAAAAGGCattggggggattcttta
                     t"
                     /listShort="yhzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    1098804..1098805
                     /Source="Nicolas_upshift_promotors"
                     /id="U840"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.422577422577423"
                     /psig="0.422577422577423"
                     /xcortree=1052
                     /SigmaFactorBS="cgggacttcatgagctcagtgtacgattttttctctttcata
                     aagaatccccccaatgccTTttTTATAGTATATGGATAacggtcgaaaaaatcaataa
                     a"
                     /listShort="comK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1098804
                     /Source="Nicolas_upshifts"
                     /id="U840"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.422577422577423"
                     /psig="0.422577422577423"
                     /xcortree=1052
                     /SigmaFactorBS="cgggacttcatgagctcagtgtacgattttttctctttcata
                     aagaatccccccaatgccTTttTTATAGTATATGGATAacggtcgaaaaaatcaataa
                     a"
                     /listShort="comK"
                     /GFF_Attribute="listLong"
     promotor_-10    1098808..1098823
                     /Source="Nicolas_upshift_promotors"
                     /id="U840"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="Sig-"
                     /pcomp="0.422577422577423"
                     /psig="0.422577422577423"
                     /xcortree=1052
                     /SigmaFactorBS="cgggacttcatgagctcagtgtacgattttttctctttcata
                     aagaatccccccaatgccTTttTTATAGTATATGGATAacggtcgaaaaaatcaataa
                     a"
                     /listShort="comK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1098823)
                     /Source="Nicolas_upshifts"
                     /id="U841"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig="0.999000999001"
                     /xcortree=2872
                     /SigmaFactorBS="atagattgccaagtattagttgtctaaaaattataaaaattT
                     ATTGATTttttcgaccgttatCCATATACTATAAAAAAGGCattggggggattcttta
                     t"
                     /listShort="yhzC"
                     /GFF_Attribute="listLong"
     S_feature       complement(1098825..1099680)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1116857_1117712_c"
                     /HighExp="Salt, Etha, C30, Heat, S8, LPhT, Gly, C90, S7,
                     UNK1"
                     /AntisenseName="comK"
                     /AntisenseCor="-5.68778941053006E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S365"
     promotor_-35    complement(1098835..1098842)
                     /Source="Nicolas_upshift_promotors"
                     /id="U841"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.914085914085914"
                     /psig="0.999000999001"
                     /xcortree=2872
                     /SigmaFactorBS="atagattgccaagtattagttgtctaaaaattataaaaattT
                     ATTGATTttttcgaccgttatCCATATACTATAAAAAAGGCattggggggattcttta
                     t"
                     /listShort="yhzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1099007..1099014
                     /Source="Nicolas_upshift_promotors"
                     /id="U842"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.747252747252747"
                     /psig="0.997002997002997"
                     /xcortree=2958
                     /SigmaFactorBS="ttaaaagatgattttatcttaaatgttaaaaaaacCTGTCGT
                     TttacaaaaacaGATGATAGATTATTAGTATAaattttgcagaaaaaggatggaggcc
                     a"
                     /listShort="comK, S366, S367"
                     /listLong="yhjA"
                     /label="promotor_-35"
     promotor_-10    1099026..1099045
                     /Source="Nicolas_upshift_promotors"
                     /id="U842"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.747252747252747"
                     /psig="0.997002997002997"
                     /xcortree=2958
                     /SigmaFactorBS="ttaaaagatgattttatcttaaatgttaaaaaaacCTGTCGT
                     TttacaaaaacaGATGATAGATTATTAGTATAaattttgcagaaaaaggatggaggcc
                     a"
                     /listShort="comK, S366, S367"
                     /listLong="yhjA"
                     /label="promotor_-10"
     upshifts        1099032
                     /Source="Nicolas_upshifts"
                     /id="U842"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.747252747252747"
                     /psig="0.997002997002997"
                     /xcortree=2958
                     /SigmaFactorBS="ttaaaagatgattttatcttaaatgttaaaaaaacCTGTCGT
                     TttacaaaaacaGATGATAGATTATTAGTATAaattttgcagaaaaaggatggaggcc
                     a"
                     /listShort="comK, S366, S367"
                     /listLong="yhjA"
     CDS             1099077..1099655
                     /gene="comK"
                     /locus_tag="BSU_10420"
                     /old_locus_tag="BSU10420"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15743949, 15819619, 16554821, 16907804, 17468244,
                     26091431, 27501195, 27920766"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15743949, 15819619,
                     16554821, 16907804, 17468244, 26091431, 27501195,
                     27920766; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="competence transcription factor (CTF)"
                     /protein_id="NP_388923.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10420"
                     /db_xref="EnsemblGenomes-Tr:CAB12882"
                     /db_xref="GOA:P40396"
                     /db_xref="InterPro:IPR010461"
                     /db_xref="SubtiList:BG11059"
                     /db_xref="UniProtKB/Swiss-Prot:P40396"
                     /translation="MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVN
                     MKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPPIMVDPSNQIFLFPTLSSTRPQC
                     GWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
                     RVPKRQEFMLYPKEERTKMIYDFILRELGERY*"
     gene            1099077..1099655
                     /gene="comK"
                     /locus_tag="BSU_10420"
                     /old_locus_tag="BSU10420"
     S_feature       1099656..1099801
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1117688_1117833"
                     /HighExp="GM 150, C30, T-4.40H, T-3.40H, GM 120, M9-tran,
                     T-2.40H, C90, G/S, T-1.10H"
                     /AntisenseName="yhxD"
                     /AntisenseCor="-0.229484184862048"
                     /AntisenseRegPval="-3.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S366"
     CDS             complement(1099702..1100601)
                     /gene="yhxD"
                     /locus_tag="BSU_10430"
                     /old_locus_tag="BSU10430"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_388924.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10430"
                     /db_xref="EnsemblGenomes-Tr:CAB12883"
                     /db_xref="GOA:P40398"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11060"
                     /db_xref="UniProtKB/Swiss-Prot:P40398"
                     /translation="MSDSNLTNPIKAFFHDEFPEQYQEPPGLQKNMKPVPDCGEKSYK
                     GSGKLTGRKALVTGGDSGIGRAAAIAYAREGADVAINYLPEEQPDAEEVKELIEAEGR
                     KAVLIPGDLSDESFCQDLVKQSHHELGGLDVLALVAGKQQAVENIEDLPTEQIYKTFE
                     VNVFSLYWVVKAALPYLPEGASIITTTSVEGYNPSPMLLDYAATKNAIIGFTVGLGKQ
                     LASKGIRVNSVAPGPIWTPLQISGGQPTENIPKFGQGTPPAPLNRAGQPVELADVYVF
                     LASENSSYVTSQVYGITGGIPTA*"
     gene            complement(1099702..1100601)
                     /gene="yhxD"
                     /locus_tag="BSU_10430"
                     /old_locus_tag="BSU10430"
     downshifts      complement(1099725)
                     /Source="Nicolas_upshifts"
                     /id="D568"
                     /incds=0
                     /nref=7
                     /ntot=53
                     /MaxReadThrough="4.95535"
                     /MaxDrop="4.1467"
                     /score="-2.68458203"
                     /energy="-14.6"
                     /TU="U844"
                     /idTUdmin="U844"
                     /TUdmin="-1144"
                     /isTUend="FALSE"
     promotor_-35    1099788..1099791
                     /Source="Nicolas_upshift_promotors"
                     /id="U843"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95104895104895"
                     /psig="0.010989010989011"
                     /xcortree=17
                     /SigmaFactorBS="atgtcacatagcttgaattctctgaagctagaaatacataaa
                     catCGGCcaattccactggctgccCAGCGcgatttaatggagctggcggcgtgccttg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1099803
                     /Source="Nicolas_upshifts"
                     /id="U843"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95104895104895"
                     /psig="0.010989010989011"
                     /xcortree=17
                     /SigmaFactorBS="atgtcacatagcttgaattctctgaagctagaaatacataaa
                     catCGGCcaattccactggctgccCAGCGcgatttaatggagctggcggcgtgccttg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    1099809..1099813
                     /Source="Nicolas_upshift_promotors"
                     /id="U843"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.95104895104895"
                     /psig="0.010989010989011"
                     /xcortree=17
                     /SigmaFactorBS="atgtcacatagcttgaattctctgaagctagaaatacataaa
                     catCGGCcaattccactggctgccCAGCGcgatttaatggagctggcggcgtgccttg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      1099847
                     /Source="Nicolas_upshifts"
                     /id="D569"
                     /incds=1
                     /nref=1
                     /ntot=5
                     /MaxReadThrough="5.45904"
                     /MaxDrop="5.6543"
                     /score="-8.69335909"
                     /energy="-4.5"
                     /TU="U842"
                     /idTUdmin="U843"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       1099892..1100758
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1117924_1118790"
                     /HighExp="GM 150, C30, T-4.40H, C90, T-3.40H, T-2.40H,
                     G/S, T-5.40H, M9-tran, nit"
                     /AntisenseName="yhxD"
                     /AntisenseCor="-0.32746434250834699"
                     /AntisenseRegPval="-7.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S367"
     promotor_-10    complement(1100628..1100646)
                     /Source="Nicolas_upshift_promotors"
                     /id="U844"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=190
                     /SigmaFactorBS="tgttttctttttccttcactattcaaactgccaaaacaTGTT
                     TTTctgcttatgctcagGGGTACACATACGAATGTAcaccaaacagaaaaggagcgtt
                     g"
                     /listShort="yhxD, S365, yhzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1100645)
                     /Source="Nicolas_upshifts"
                     /id="U844"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=190
                     /SigmaFactorBS="tgttttctttttccttcactattcaaactgccaaaacaTGTT
                     TTTctgcttatgctcagGGGTACACATACGAATGTAcaccaaacagaaaaggagcgtt
                     g"
                     /listShort="yhxD, S365, yhzC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1100661..1100667)
                     /Source="Nicolas_upshift_promotors"
                     /id="U844"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=190
                     /SigmaFactorBS="tgttttctttttccttcactattcaaactgccaaaacaTGTT
                     TTTctgcttatgctcagGGGTACACATACGAATGTAcaccaaacagaaaaggagcgtt
                     g"
                     /listShort="yhxD, S365, yhzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1100735..1100742
                     /Source="Nicolas_upshift_promotors"
                     /id="U845"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2715
                     /SigmaFactorBS="aaaacaagaaaaaacaaagccttcttccatatttaTCTTGTC
                     AaataagactatatgAATTATGATAAATTCGAGCTataaatcaactaaatattgggtg
                     t"
                     /listShort="yhjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1100757..1100776
                     /Source="Nicolas_upshift_promotors"
                     /id="U845"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2715
                     /SigmaFactorBS="aaaacaagaaaaaacaaagccttcttccatatttaTCTTGTC
                     AaataagactatatgAATTATGATAAATTCGAGCTataaatcaactaaatattgggtg
                     t"
                     /listShort="yhjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1100760
                     /Source="Nicolas_upshifts"
                     /id="U845"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.866133866133866"
                     /psig=1
                     /xcortree=2715
                     /SigmaFactorBS="aaaacaagaaaaaacaaagccttcttccatatttaTCTTGTC
                     AaataagactatatgAATTATGATAAATTCGAGCTataaatcaactaaatattgggtg
                     t"
                     /listShort="yhjA"
                     /GFF_Attribute="listLong"
     CDS             1100818..1101087
                     /gene="yhjA"
                     /locus_tag="BSU_10440"
                     /old_locus_tag="BSU10440"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388925.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10440"
                     /db_xref="EnsemblGenomes-Tr:CAB12884"
                     /db_xref="InterPro:IPR008613"
                     /db_xref="SubtiList:BG13068"
                     /db_xref="UniProtKB/Swiss-Prot:O07555"
                     /translation="MKKAAAVLLSLGLVFGFSYGAGHVAEAKTKVKVYKNCKELNKVY
                     KGGVARTSKVKNKGGKTKYKPYVSKALYDANKNKDRDKDLIACER*"
     gene            1100818..1101087
                     /gene="yhjA"
                     /locus_tag="BSU_10440"
                     /old_locus_tag="BSU10440"
     downshifts      1101079
                     /Source="Nicolas_upshifts"
                     /id="D570"
                     /incds=0
                     /nref=230
                     /ntot=267
                     /MaxReadThrough="2.67325"
                     /MaxDrop="7.59695"
                     /score="27.4895724"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U845"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(1101127)
                     /Source="Nicolas_upshifts"
                     /id="D571"
                     /incds=0
                     /nref=11
                     /ntot=113
                     /MaxReadThrough="2.40747"
                     /MaxDrop="4.60953"
                     /score="20.2036192"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U846"
                     /TUdmin=6
                     /isTUend="TRUE"
     CDS             complement(1101130..1102599)
                     /gene="yhjB"
                     /locus_tag="BSU_10450"
                     /old_locus_tag="BSU10450"
                     /function="16.1: Circulate"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16267290,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Na+/metabolite cotransporter"
                     /protein_id="NP_388926.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10450"
                     /db_xref="EnsemblGenomes-Tr:CAB12885"
                     /db_xref="GOA:O07556"
                     /db_xref="InterPro:IPR001734"
                     /db_xref="SubtiList:BG13069"
                     /db_xref="UniProtKB/Swiss-Prot:O07556"
                     /translation="MNAALIIIFGVLLLSIFLGIRAQKGKDMNLEQWTVGGRGFGTVF
                     VFLLMAGEIYTTFTFLGGSGWAYGKGGPAFYIIAYGCLAYILSYWLLPAVWTYAKQHK
                     LMSQSDFFTKKYNSPLLGILVSLVGIAALIPYLVLQLKGLGLIVSETSYGKITPTAAI
                     WIGAVSITVYVMVSGIHGSAWISVVKDIMILVVVLFLGVYLPIHYYGGFQDMFQQIET
                     AKPGFLTLPESGQSVAWFSSTVLLTALGFYMWPHTFSASYSAENPKVFRKNAIIMPLY
                     QLVLLFVLFVGFAAILQVPDLNGADGDLSLLRLSLQAFDPWFVGIIGAAGLLTALVPG
                     SMILMSASTLFAKNVYKVIAPRTTEQQVSALAKFLVPVIALISVYFTFKGGNTIVTLL
                     LMGYSLVTQLFPALLFSLLKHNMVTKQGAFAGIIAGVGAVTYITMTETTIGTLFPALP
                     QAAKDLNVGIVALLLNITVMMAVSLMTRKAKSAAADQAA*"
     gene            complement(1101130..1102599)
                     /gene="yhjB"
                     /locus_tag="BSU_10450"
                     /old_locus_tag="BSU10450"
     CDS             complement(1102596..1102796)
                     /gene="yhjC"
                     /locus_tag="BSU_10460"
                     /old_locus_tag="BSU10460"
                     /function="16.1: Circulate"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16267290; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_388927.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10460"
                     /db_xref="EnsemblGenomes-Tr:CAB12886"
                     /db_xref="GOA:O07557"
                     /db_xref="InterPro:IPR021741"
                     /db_xref="SubtiList:BG13070"
                     /db_xref="UniProtKB/Swiss-Prot:O07557"
                     /translation="MKLIHVLAALPFIGILLGIPFANKVTPYVFGMPFILAYIVMWAL
                     LTSALMAIVYVLDKENKKEEAE*"
     gene            complement(1102596..1102796)
                     /gene="yhjC"
                     /locus_tag="BSU_10460"
                     /old_locus_tag="BSU10460"
     S_feature       complement(1102797..1102915)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1120829_1120947_c"
                     /HighExp="S1, Etha, HiOs, MG 120, LoTm, T-5.40H, S2,
                     GM-0.1, GM-0.2, T0.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S368"
     promotor_-10    complement(1102898..1102917)
                     /Source="Nicolas_upshift_promotors"
                     /id="U846"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig=1
                     /xcortree=2904
                     /SigmaFactorBS="cttcgggcgattcagagcattaatttcagacaattcacACTA
                     TACAaacaaaataaatTTATTTATAATTCGAACCACagcctttcactccaaaaaatga
                     c"
                     /listShort="S368, yhjC, yhjB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1102915)
                     /Source="Nicolas_upshifts"
                     /id="U846"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig=1
                     /xcortree=2904
                     /SigmaFactorBS="cttcgggcgattcagagcattaatttcagacaattcacACTA
                     TACAaacaaaataaatTTATTTATAATTCGAACCACagcctttcactccaaaaaatga
                     c"
                     /listShort="S368, yhjC, yhjB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1102930..1102937)
                     /Source="Nicolas_upshift_promotors"
                     /id="U846"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.574425574425574"
                     /psig=1
                     /xcortree=2904
                     /SigmaFactorBS="cttcgggcgattcagagcattaatttcagacaattcacACTA
                     TACAaacaaaataaatTTATTTATAATTCGAACCACagcctttcactccaaaaaatga
                     c"
                     /listShort="S368, yhjC, yhjB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(1103003)
                     /Source="Nicolas_upshifts"
                     /id="D572"
                     /incds=0
                     /nref=1
                     /ntot=8
                     /MaxReadThrough="3.99656"
                     /MaxDrop="2.67326"
                     /score="20.2036192"
                     /energy="-11.2"
                     /TU="U848"
                     /idTUdmin="U848"
                     /TUdmin="-374"
                     /isTUend="FALSE"
     CDS             complement(1103004..1103366)
                     /gene="yhjD"
                     /locus_tag="BSU_10470"
                     /old_locus_tag="BSU10470"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16267290"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388928.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10470"
                     /db_xref="EnsemblGenomes-Tr:CAB12887"
                     /db_xref="GOA:O07558"
                     /db_xref="SubtiList:BG13071"
                     /db_xref="UniProtKB/Swiss-Prot:O07558"
                     /translation="MPNLQEEIYDLIERALFLPMAITIFNRDLAGIEESTLKLKHPYK
                     QLISESLKIAQKDLMEVRKELRKRKIAIRETERDEAFTLYTFVIDGYEENHRYFNPRI
                     REQVSELLTYYLFAPDRL*"
     gene            complement(1103004..1103366)
                     /gene="yhjD"
                     /locus_tag="BSU_10470"
                     /old_locus_tag="BSU10470"
     promotor_-35    1103204..1103209
                     /Source="Nicolas_upshift_promotors"
                     /id="U847"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.963036963036963"
                     /psig="0.963036963036963"
                     /xcortree=1144
                     /SigmaFactorBS="tttcctcagttcttttctgacctccatcaaatccttttGTGC
                     TAtttttaatgattcgcTGATAAGCTGTTTATAAGGatgcttcaattttaatgtgctt
                     t"
                     /listShort="S369, yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1103225..1103243
                     /Source="Nicolas_upshift_promotors"
                     /id="U847"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.963036963036963"
                     /psig="0.963036963036963"
                     /xcortree=1144
                     /SigmaFactorBS="tttcctcagttcttttctgacctccatcaaatccttttGTGC
                     TAtttttaatgattcgcTGATAAGCTGTTTATAAGGatgcttcaattttaatgtgctt
                     t"
                     /listShort="S369, yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1103226
                     /Source="Nicolas_upshifts"
                     /id="U847"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.963036963036963"
                     /psig="0.963036963036963"
                     /xcortree=1144
                     /SigmaFactorBS="tttcctcagttcttttctgacctccatcaaatccttttGTGC
                     TAtttttaatgattcgcTGATAAGCTGTTTATAAGGatgcttcaattttaatgtgctt
                     t"
                     /listShort="S369, yhjE, sipV"
                     /GFF_Attribute="listLong"
     S_feature       1103235..1103474
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1121267_1121506"
                     /HighExp="S6, S4, S8, S5, LoTm, B36, S3, S7, BT, B60"
                     /AntisenseName="yhjD"
                     /AntisenseCor="0.24202608585419999"
                     /AntisenseRegPval="-4.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.963"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S369"
     promotor_-10    complement(1103396..1103415)
                     /Source="Nicolas_upshift_promotors"
                     /id="U848"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.975024975024975"
                     /psig="0.999000999001"
                     /xcortree=1502
                     /SigmaFactorBS="tcagcagaaaactaaaaagttttggtgattttttctgTCTTG
                     AAAcatttcaccagccgATATAGAATACAAATAGAACaaacgttcccttagaaagaag
                     g"
                     /listShort="yhjD, S368, yhjC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1103414)
                     /Source="Nicolas_upshifts"
                     /id="U848"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.975024975024975"
                     /psig="0.999000999001"
                     /xcortree=1502
                     /SigmaFactorBS="tcagcagaaaactaaaaagttttggtgattttttctgTCTTG
                     AAAcatttcaccagccgATATAGAATACAAATAGAACaaacgttcccttagaaagaag
                     g"
                     /listShort="yhjD, S368, yhjC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1103430..1103437)
                     /Source="Nicolas_upshift_promotors"
                     /id="U848"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.975024975024975"
                     /psig="0.999000999001"
                     /xcortree=1502
                     /SigmaFactorBS="tcagcagaaaactaaaaagttttggtgattttttctgTCTTG
                     AAAcatttcaccagccgATATAGAATACAAATAGAACaaacgttcccttagaaagaag
                     g"
                     /listShort="yhjD, S368, yhjC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1103456..1103463
                     /Source="Nicolas_upshift_promotors"
                     /id="U849"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.711288711288711"
                     /psig="0.998001998001998"
                     /xcortree=619
                     /SigmaFactorBS="cggctggtgaaatgtttcaagacagaaaaaatcaccaaaaCT
                     TTTTAGttttctgctgataATGTGTAGAATAAGGATAGAcaaacccggtaaggagtat
                     a"
                     /listShort="yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1103476
                     /Source="Nicolas_upshifts"
                     /id="U849"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.711288711288711"
                     /psig="0.998001998001998"
                     /xcortree=619
                     /SigmaFactorBS="cggctggtgaaatgtttcaagacagaaaaaatcaccaaaaCT
                     TTTTAGttttctgctgataATGTGTAGAATAAGGATAGAcaaacccggtaaggagtat
                     a"
                     /listShort="yhjE, sipV"
                     /GFF_Attribute="listLong"
     promotor_-10    1103477..1103496
                     /Source="Nicolas_upshift_promotors"
                     /id="U849"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.711288711288711"
                     /psig="0.998001998001998"
                     /xcortree=619
                     /SigmaFactorBS="cggctggtgaaatgtttcaagacagaaaaaatcaccaaaaCT
                     TTTTAGttttctgctgataATGTGTAGAATAAGGATAGAcaaacccggtaaggagtat
                     a"
                     /listShort="yhjE, sipV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1103518..1104141
                     /gene="yhjE"
                     /locus_tag="BSU_10480"
                     /old_locus_tag="BSU10480"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388929.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10480"
                     /db_xref="EnsemblGenomes-Tr:CAB12888"
                     /db_xref="GOA:O07559"
                     /db_xref="InterPro:IPR015414"
                     /db_xref="InterPro:IPR032816"
                     /db_xref="SubtiList:BG13072"
                     /db_xref="UniProtKB/Swiss-Prot:O07559"
                     /translation="MLEHFLSYLTQEHLTELFQSYRAFGPLIAVLLPLIEAFLPFLPL
                     IVFVVANTNSFGLWEGFILSWAGSTAGSILVFLIVRQYGQRKLLGFIRSHPSVRKLML
                     WVERHGFGPMFLLLCFPFTPSAAVNVVAGLSRIGTRPFILAAASGKLVMIFMISFIGY
                     DLHALITQPIRTVIAVLVITVLWYVGKKVERYLHVRASQREHDGGRQ*"
     gene            1103518..1104141
                     /gene="yhjE"
                     /locus_tag="BSU_10480"
                     /old_locus_tag="BSU10480"
     CDS             1104143..1104649
                     /gene="sipV"
                     /locus_tag="BSU_10490"
                     /old_locus_tag="BSU10490"
                     /EC_number="3.4.21.89"
                     /function="16.13: Shape"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9325333, 9694797, 11309398, 12897006, 14568161,
                     27159567"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9325333, 9694797,
                     11309398, 12897006, 14568161, 27159567; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase"
                     /protein_id="NP_388930.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10490"
                     /db_xref="EnsemblGenomes-Tr:CAB12889"
                     /db_xref="GOA:O07560"
                     /db_xref="InterPro:IPR000223"
                     /db_xref="InterPro:IPR015927"
                     /db_xref="InterPro:IPR019756"
                     /db_xref="InterPro:IPR019757"
                     /db_xref="InterPro:IPR019758"
                     /db_xref="InterPro:IPR036286"
                     /db_xref="SubtiList:BG12674"
                     /db_xref="UniProtKB/Swiss-Prot:O07560"
                     /translation="MKKRFWFLAGVVSVVLAIQVKNAVFIDYKVEGVSMNPTFQEGNE
                     LLVNKFSHRFKTIHRFDIVLFKGPDHKVLIKRVIGLPGETIKYKDDQLYVNGKQVAEP
                     FLKHLKSVSAGSHVTGDFSLKDVTGTSKVPKGKYFVVGDNRIYSFDSRHFGPIREKNI
                     VGVISDAE*"
     gene            1104143..1104649
                     /gene="sipV"
                     /locus_tag="BSU_10490"
                     /old_locus_tag="BSU10490"
     downshifts      1104642
                     /Source="Nicolas_upshifts"
                     /id="D573"
                     /incds=0
                     /nref=131
                     /ntot=250
                     /MaxReadThrough="0.63331"
                     /MaxDrop="4.58282"
                     /score="-7.37718733"
                     /energy="-7.1"
                     /TU="NA"
                     /idTUdmin="U847"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1104700..1104707
                     /Source="Nicolas_upshift_promotors"
                     /id="U850"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=2713
                     /SigmaFactorBS="cgtctttttgtatgccgtttggaaaaatgtGTTGAAGAaaaa
                     tttgtaaggAGCTATAATCAAAATTGTTAcctgtgtaacaaaatttatatattttttt
                     g"
                     /listShort="S370, yhjG, yhjH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1104721..1104740
                     /Source="Nicolas_upshift_promotors"
                     /id="U850"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=2713
                     /SigmaFactorBS="cgtctttttgtatgccgtttggaaaaatgtGTTGAAGAaaaa
                     tttgtaaggAGCTATAATCAAAATTGTTAcctgtgtaacaaaatttatatattttttt
                     g"
                     /listShort="S370, yhjG, yhjH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1104730..1104829
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1122762_1122861"
                     /HighExp="LBGstat, LBGexp, Lbtran, C90, dia0, Lbexp, HPh,
                     dia5, aero, LBGtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S370"
     upshifts        1104730
                     /Source="Nicolas_upshifts"
                     /id="U850"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.662337662337662"
                     /psig=1
                     /xcortree=2713
                     /SigmaFactorBS="cgtctttttgtatgccgtttggaaaaatgtGTTGAAGAaaaa
                     tttgtaaggAGCTATAATCAAAATTGTTAcctgtgtaacaaaatttatatattttttt
                     g"
                     /listShort="S370, yhjG, yhjH"
                     /GFF_Attribute="listLong"
     CDS             1104830..1106329
                     /gene="yhjG"
                     /locus_tag="BSU_10500"
                     /old_locus_tag="BSU10500"
                     /EC_number="1.14.13.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7678243, 15121720;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aromatic compound
                     monooxygenase/hydroxylase"
                     /protein_id="NP_388931.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10500"
                     /db_xref="EnsemblGenomes-Tr:CAB12890"
                     /db_xref="GOA:O07561"
                     /db_xref="InterPro:IPR002938"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG13073"
                     /db_xref="UniProtKB/Swiss-Prot:O07561"
                     /translation="MMMKYEAVIIGGGPVGFMLASELAIAGVGTCVIERLEKPVPHSK
                     ALTLHPRTLELLEMRGILERFVSKGSKIPTGHFSMLDTRLDFSGLDTSCPYTLLLPQS
                     KTEKLLEDHARSLGTEVFRGAEALAVTQNGEAVQTIFKDRDGSVRTITSKFAVGADGA
                     GSTVRKQAKIEFPGTDSTVTAALGDVVLLSPPPSGVLSLCTKEGGVMIVPLSPDRYRV
                     VVISPYRTQTPKDVPVTEEELKADLLRICGTDFGLTDPSWMSRFGNAARQAKRYRDGR
                     IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGSAPSWLLDSYHDERHPAAE
                     GLLRNTEAQTKLIDFTQAGLHLRSMMSELLAFPDVNRYVAGQISALDVRYEADRTMPP
                     NRLNGARLPDMKLILSDGNSERLYSFLQNGTFVLLSLRQEADDHIEVKGLRTVTASLA
                     EPNEKLRNVHTILIRPDGHVAWAVDASAPDCSEVIQKGISRWFSVTSRV*"
     gene            1104830..1106329
                     /gene="yhjG"
                     /locus_tag="BSU_10500"
                     /old_locus_tag="BSU10500"
     promotor_-35    1106337..1106344
                     /Source="Nicolas_upshift_promotors"
                     /id="U851"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig=1
                     /xcortree=1955
                     /SigmaFactorBS="cagccgctggttttccgtcaccagccgagtataattcaattC
                     GATTGTTtcatctgtaacaaAACGGTATGATAGAAGAAACaatcgaatgaaaaaggat
                     g"
                     /listShort="yhjH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1106356
                     /Source="Nicolas_upshifts"
                     /id="U851"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig=1
                     /xcortree=1955
                     /SigmaFactorBS="cagccgctggttttccgtcaccagccgagtataattcaattC
                     GATTGTTtcatctgtaacaaAACGGTATGATAGAAGAAACaatcgaatgaaaaaggat
                     g"
                     /listShort="yhjH"
                     /GFF_Attribute="listLong"
     promotor_-10    1106358..1106377
                     /Source="Nicolas_upshift_promotors"
                     /id="U851"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.515484515484515"
                     /psig=1
                     /xcortree=1955
                     /SigmaFactorBS="cagccgctggttttccgtcaccagccgagtataattcaattC
                     GATTGTTtcatctgtaacaaAACGGTATGATAGAAGAAACaatcgaatgaaaaaggat
                     g"
                     /listShort="yhjH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1106406..1106933
                     /gene="yhjH"
                     /locus_tag="BSU_10510"
                     /old_locus_tag="BSU10510"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="NP_388932.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10510"
                     /db_xref="EnsemblGenomes-Tr:CAB12891"
                     /db_xref="GOA:Q796S4"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13074"
                     /db_xref="UniProtKB/Swiss-Prot:Q796S4"
                     /translation="MNTDHTKRNLFELYAELIHQQEKWEGLIKAFLSDELRKLDVEHG
                     SKSQLTMTEIHVLSCVGDNEPINVTSIAEKMNTTKATVSRISTKLLGAGFLHRTQLSD
                     NKKEVYFRLTPAGKKLHSLHKYYHQKAEQRFLSFFDRYTEEEILFAERLFRDLVTKWY
                     PSSEEIEGGLPSIFK*"
     gene            1106406..1106933
                     /gene="yhjH"
                     /locus_tag="BSU_10510"
                     /old_locus_tag="BSU10510"
     downshifts      1106895
                     /Source="Nicolas_upshifts"
                     /id="D574"
                     /incds=0
                     /nref=8
                     /ntot=128
                     /MaxReadThrough="1.1509"
                     /MaxDrop="3.41655"
                     /score="11.3050978"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U851"
                     /TUdmin=8
                     /isTUend="TRUE"
     S_feature       complement(1106947..1107090)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1124979_1125122_c"
                     /HighExp="B36, B60, T0.30H, LBGstat, T1.30H, T1.0H, LPhT,
                     LBGtran, Diami, T-0.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.979"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S371"
     downshifts      complement(1106985)
                     /Source="Nicolas_upshifts"
                     /id="D575"
                     /incds=0
                     /nref=4
                     /ntot=72
                     /MaxReadThrough="1.20458"
                     /MaxDrop="5.06167"
                     /score="27.254423"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U855"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1107091..1108296)
                     /gene="glcP"
                     /locus_tag="BSU_10520"
                     /old_locus_tag="BSU10520"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:9457850, 15849754, 16850406, 17056753, 19087206"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9457850, 15849754,
                     16850406, 17056753, 19087206; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose/mannose:H+ symporter (recent HGT
                     island)"
                     /protein_id="NP_388933.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10520"
                     /db_xref="EnsemblGenomes-Tr:CAB12892"
                     /db_xref="GOA:O07563"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13075"
                     /db_xref="UniProtKB/Swiss-Prot:O07563"
                     /translation="MLRGTYLFGYAFFFTVGIIHISTGSLTPFLLEAFNKTTDDISVI
                     IFFQFTGFLSGVLIAPLMIKKYSHFRTLTLALTIMLVALSIFFLTKDWYYIIVMAFLL
                     GYGAGTLETTVGSFVIANFESNAEKMSKLEVLFGLGALSFPLLINSFIDINNWFLPYY
                     CIFTFLFVLFVGWLIFLSKNREYAKNANQQVTFPDGGAFQYFIGDRKKSKQLGFFVFF
                     AFLYAGIETNFANFLPSIMINQDNEQISLISVSFFWVGIIIGRILIGFVSRRLDFSKY
                     LLFSCSCLIVLLIAFSYISNPILQLSGTFLIGLSIAGIFPIALTLASIIIQKYVDEVT
                     SLFIASASFGGAIISFLIGWSLNQDTILLTMGIFTTMAVILVGISVKIRRTKTEDPIS
                     LENKASKTQ*"
     gene            complement(1107091..1108296)
                     /gene="glcP"
                     /locus_tag="BSU_10520"
                     /old_locus_tag="BSU10520"
     promotor_-35    1107786..1107791
                     /Source="Nicolas_upshift_promotors"
                     /id="U852"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1194
                     /SigmaFactorBS="tctcggttcttagacaagaaaattaaccaccctaCGAATAgg
                     acgaataaaaaggtGAATATACAGTAATATGGTaaaaaccagttattgatatctatga
                     a"
                     /listShort="S372"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1107808..1107826
                     /Source="Nicolas_upshift_promotors"
                     /id="U852"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1194
                     /SigmaFactorBS="tctcggttcttagacaagaaaattaaccaccctaCGAATAgg
                     acgaataaaaaggtGAATATACAGTAATATGGTaaaaaccagttattgatatctatga
                     a"
                     /listShort="S372"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1107811..1108337
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1125843_1126369"
                     /HighExp="S4, S5, S6, S8, S7, S3, T5.0H, M9-stat, LBGstat,
                     T4.0H"
                     /AntisenseName="glcP"
                     /AntisenseCor="-0.155079396671681"
                     /AntisenseRegPval="-2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S372"
     upshifts        1107812
                     /Source="Nicolas_upshifts"
                     /id="U852"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.995004995004995"
                     /psig="0.995004995004995"
                     /xcortree=1194
                     /SigmaFactorBS="tctcggttcttagacaagaaaattaaccaccctaCGAATAgg
                     acgaataaaaaggtGAATATACAGTAATATGGTaaaaaccagttattgatatctatga
                     a"
                     /listShort="S372"
                     /GFF_Attribute="listLong"
     downshifts      1108295
                     /Source="Nicolas_upshifts"
                     /id="D576"
                     /incds=0
                     /nref=6
                     /ntot=59
                     /MaxReadThrough="2.40974"
                     /MaxDrop="3.26024"
                     /score="9.68585629"
                     /energy="-9.4"
                     /TU="NA"
                     /idTUdmin="U852"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1108368..1109420)
                     /gene="ntdC"
                     /locus_tag="BSU_10530"
                     /old_locus_tag="BSU10530"
                     /EC_number="1.1.1.-"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14612444, 17056753, 23586652, 28353336"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14612444, 17056753,
                     23586652, 28353336; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthesis of neotrehalosadiamine
                     (3,3'-diamino-3,3'-dideoxy-alpha,beta-trehalose),
                     glucose-6-P 3-dehydrogenase; kanosamine biosynthesis
                     (recent HGT island)"
                     /protein_id="NP_388934.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10530"
                     /db_xref="EnsemblGenomes-Tr:CAB12893"
                     /db_xref="GOA:O07564"
                     /db_xref="InterPro:IPR000683"
                     /db_xref="InterPro:IPR004104"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13076"
                     /db_xref="UniProtKB/Swiss-Prot:O07564"
                     /translation="MKKIGIIGAGGIARAHATALSTIKNAELVGVYDINQQNAESFVK
                     TFGGKSFENVDELIDASEGLIVASPNFCHKEHALQALGKHKHVLCEKPMAISLEEASI
                     MKDTAERLSVRASMGFNYRYLSYVNILKSLIINNELGNILSIKVHFKKNSALRRKKFT
                     WRDDANSKKTSGSLGDLGIHLIDMVWYLFESDFITESVRAKMNTNVKTKEDKQVLVDD
                     YAEIYGQLKNKVFVNIITSKCSVPEDCGFSIEVVGHKKEFKYHTGNPHVYKLIDGLNV
                     VDCPVPQSLLNDPPNEFYGWADSFRSELINWIASTQNDWVEIPSFSDGFRSQEVLEMF
                     FEKDSNSQPMSVSAVN*"
     gene            complement(1108368..1109420)
                     /gene="ntdC"
                     /locus_tag="BSU_10530"
                     /old_locus_tag="BSU10530"
     CDS             complement(1109434..1110282)
                     /gene="ntdB"
                     /locus_tag="BSU_10540"
                     /old_locus_tag="BSU10540"
                     /EC_number="3.-.-.-"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:14612444, 17056753, 23586652"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14612444, 17056753,
                     23586652; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthesis of neotrehalosadiamine
                     (3,3'-diamino-3,3'-dideoxy-alpha,
                     beta-trehalose);kanosamine-6-phosphate phosphatase (recent
                     HGT island)"
                     /protein_id="NP_388935.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10540"
                     /db_xref="EnsemblGenomes-Tr:CAB12894"
                     /db_xref="GOA:O07565"
                     /db_xref="InterPro:IPR006379"
                     /db_xref="InterPro:IPR006380"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="PDB:3GYG"
                     /db_xref="SubtiList:BG13077"
                     /db_xref="UniProtKB/Swiss-Prot:O07565"
                     /translation="MLLSKKSEYKTLSTVEHPQYIVFCDFDETYFPHTIDEQKQQDIY
                     ELEDYLEQKSKDGELIIGWVTGSSIESILDKMGRGKFRYFPHFIASDLGTEITYFSEH
                     NFGQQDNKWNSRINEGFSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQD
                     EINDKKNLLAIEKICEEYGVSVNINRCNPLAGDPEDSYDVDFIPIGTGKNEIVTFMLE
                     KYNLNTERAIAFGDSGNDVRMLQTVGNGYLLKNATQEAKNLHNLITDSEYSKGITNTL
                     KKLIGS*"
     gene            complement(1109434..1110282)
                     /gene="ntdB"
                     /locus_tag="BSU_10540"
                     /old_locus_tag="BSU10540"
     CDS             complement(1110254..1111579)
                     /gene="ntdA"
                     /locus_tag="BSU_10550"
                     /old_locus_tag="BSU10550"
                     /EC_number="2.6.1.-"
                     /function="16.5: Explore"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:14612444, 17056753, 19087206, 23586652, 24097983,
                     24509311, 28353336"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14612444, 17056753,
                     19087206, 23586652, 24097983, 24509311, 28353336; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthesis of neotrehalosadiamine
                     (3,3'-diamino-3,3'-dideoxy-alpha,
                     beta-trehalose);3-oxo-glucose-6-phosphate:glutamate
                     aminotransferase; kanosamine aminotransferase (recent HGT
                     island)"
                     /protein_id="NP_388936.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10550"
                     /db_xref="EnsemblGenomes-Tr:CAB12895"
                     /db_xref="GOA:O07566"
                     /db_xref="InterPro:IPR000653"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="PDB:4K2B"
                     /db_xref="PDB:4K2I"
                     /db_xref="PDB:4K2M"
                     /db_xref="SubtiList:BG13078"
                     /db_xref="UniProtKB/Swiss-Prot:O07566"
                     /translation="MQKQVKISGKSKENMSLLKHLKGDVQGKELVIEDSIVNERWKQV
                     LKEKIDIEHDLFNYQKNREISKVPFLPVDRLITNDEVEDILNTLTEVLPTGKFTSGPY
                     LEQFEKVLSTYLHKRYVIATSSGTDAIMIGLLALGLNPGDEVIMPANSFSATENAVLA
                     SGGVPIYVDINPQTFCIDPDKIEEAITPYTKFILPVHLYGKHSDMQHIRQIANRYKLK
                     VIEDACQGIGLTDLGKYADITTLSFNPYKNFGVCGKAGAIATDNEELAKKCIQFSYHG
                     FEVNVKNKKVINFGFNSKMDNLQAAIGLERMKYLSLNNFKRLFLADRYITQLAELQNK
                     GYIELPELSEDHVWHLFPIKVRTEDRADIMTKLNEDFGVQTDVYYPILSHMQKTPLVQ
                     DKYAGLQLVHTEKAHSQVLHLPLYPSFTLEEQDRVMEGLFHVIKQEIGV*"
     gene            complement(1110254..1111579)
                     /gene="ntdA"
                     /locus_tag="BSU_10550"
                     /old_locus_tag="BSU10550"
     promotor_-35    1110423..1110428
                     /Source="Nicolas_upshift_promotors"
                     /id="U853"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1031
                     /SigmaFactorBS="cctgcatacttgtcctgtactaaaggagtttttTGCATAtga
                     gaaagtattggaTAATATACATCTGTTTGAAcaccaaaatcttcatttaatttagtca
                     t"
                     /listShort="S373, S374, yhjM"
                     /listLong="S375"
                     /label="promotor_-35"
     promotor_-10    1110444..1110462
                     /Source="Nicolas_upshift_promotors"
                     /id="U853"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1031
                     /SigmaFactorBS="cctgcatacttgtcctgtactaaaggagtttttTGCATAtga
                     gaaagtattggaTAATATACATCTGTTTGAAcaccaaaatcttcatttaatttagtca
                     t"
                     /listShort="S373, S374, yhjM"
                     /listLong="S375"
                     /label="promotor_-10"
     S_feature       1110450..1111238
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1128482_1129270"
                     /HighExp="S4, S3, S5, S6, S7, T5.0H, M9-stat, S8, Pyr,
                     G/S"
                     /AntisenseName="ntdA"
                     /AntisenseCor="-0.29559566742128002"
                     /AntisenseRegPval="-6.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S373"
     upshifts        1110450
                     /Source="Nicolas_upshifts"
                     /id="U853"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1031
                     /SigmaFactorBS="cctgcatacttgtcctgtactaaaggagtttttTGCATAtga
                     gaaagtattggaTAATATACATCTGTTTGAAcaccaaaatcttcatttaatttagtca
                     t"
                     /listShort="S373, S374, yhjM"
                     /listLong="S375"
     promotor_-35    1111214..1111221
                     /Source="Nicolas_upshift_promotors"
                     /id="U854"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.776223776223776"
                     /psig="0.998001998001998"
                     /xcortree=2928
                     /SigmaFactorBS="ataaacctatcataatagcatcggttccactgctGGTTGCAA
                     ttacataccttttaTGTAAATATGTAGATAAAACtttttcgaattgctctaaataggg
                     a"
                     /listShort="S374, yhjM, S375"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1111236..1111255
                     /Source="Nicolas_upshift_promotors"
                     /id="U854"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.776223776223776"
                     /psig="0.998001998001998"
                     /xcortree=2928
                     /SigmaFactorBS="ataaacctatcataatagcatcggttccactgctGGTTGCAA
                     ttacataccttttaTGTAAATATGTAGATAAAACtttttcgaattgctctaaataggg
                     a"
                     /listShort="S374, yhjM, S375"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1111240..1111682
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1129272_1129714"
                     /HighExp="T4.0H, T3.0H, T2.30H, HiOs, T3.30H, T2.0H,
                     T5.0H, T1.30H, LoTm, T-1.10H"
                     /AntisenseName="ntdA"
                     /AntisenseCor="-0.101471720232752"
                     /AntisenseRegPval="-1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="0.998, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S374"
     upshifts        1111240
                     /Source="Nicolas_upshifts"
                     /id="U854"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.776223776223776"
                     /psig="0.998001998001998"
                     /xcortree=2928
                     /SigmaFactorBS="ataaacctatcataatagcatcggttccactgctGGTTGCAA
                     ttacataccttttaTGTAAATATGTAGATAAAACtttttcgaattgctctaaataggg
                     a"
                     /listShort="S374, yhjM, S375"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1111614..1111633)
                     /Source="Nicolas_upshift_promotors"
                     /id="U855"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.849150849150849"
                     /psig="0.97902097902098"
                     /xcortree=1578
                     /SigmaFactorBS="gcatattttcccttccttaaaaaagttgttgaCATGTTACcg
                     atttcagaaacTAGGATAAATTTGTAATAAAtttttagattataaaatcattggaggt
                     a"
                     /listShort="ntdA, ntdB, ntdC, glcP, S371"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1111626)
                     /Source="Nicolas_upshifts"
                     /id="U855"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.849150849150849"
                     /psig="0.97902097902098"
                     /xcortree=1578
                     /SigmaFactorBS="gcatattttcccttccttaaaaaagttgttgaCATGTTACcg
                     atttcagaaacTAGGATAAATTTGTAATAAAtttttagattataaaatcattggaggt
                     a"
                     /listShort="ntdA, ntdB, ntdC, glcP, S371"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1111647..1111654)
                     /Source="Nicolas_upshift_promotors"
                     /id="U855"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.849150849150849"
                     /psig="0.97902097902098"
                     /xcortree=1578
                     /SigmaFactorBS="gcatattttcccttccttaaaaaagttgttgaCATGTTACcg
                     atttcagaaacTAGGATAAATTTGTAATAAAtttttagattataaaatcattggaggt
                     a"
                     /listShort="ntdA, ntdB, ntdC, glcP, S371"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1111683..1112672
                     /gene="ntdR"
                     /locus_tag="BSU_10560"
                     /old_locus_tag="BSU10560"
                     /experiment="publication(s) with functional evidences,
                     PMID:14612444, 17056753"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14612444, 17056753;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator of the ntd operon
                     (NtdR-NTD) (recent HGT island)"
                     /protein_id="NP_388937.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10560"
                     /db_xref="EnsemblGenomes-Tr:CAB12896"
                     /db_xref="GOA:O07567"
                     /db_xref="InterPro:IPR000843"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="InterPro:IPR028082"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13079"
                     /db_xref="UniProtKB/Swiss-Prot:O07567"
                     /translation="MPTIDEIAKLCNVSKTTVSRVLNNHPYVSKEKRDMILKAINELD
                     YTPNYLARNFRRNKTQTIALSVPSIDHPFFAQLIKGVSHEVLFKNYKVIVFQTFYDKQ
                     TELELLELLKHKEVDGIILGTLENEWDQISPFLKYGPILLCNEYHHSADITIIGYDEF
                     EAAYMGVVHLIERGHKKIGFCFDTPYSEAQCQRKEGYLKALQDYNLHHRSEWIFGEMF
                     NIEDGFRVFHKIKDLKDRPSAIFTGNDQVAAGIIKQAMKNGFKVPEDLAVIGFDNQLI
                     CQVVTPTITTIDIPVIELGQQAVLKIIESISGNASLNRRIIKLPTKLIIREST*"
     gene            1111683..1112672
                     /gene="ntdR"
                     /locus_tag="BSU_10560"
                     /old_locus_tag="BSU10560"
     S_feature       1112673..1113050
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1130705_1131082"
                     /HighExp="T4.0H, T5.0H, T3.30H, T2.0H, HiOs, T2.30H,
                     T3.0H, LoTm, T1.30H, Pyr"
                     /AntisenseName="yhjN"
                     /AntisenseCor="-5.0383887616073E-2"
                     /AntisenseRegPval="-0.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="SigEF"
                     /TUlongPSig="0.997"
                     /label="S375"
     S_feature       complement(1112727..1112885)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1130759_1130917_c"
                     /HighExp="B60, Sw, Cold, B36, BI, GM 15, GM 10, C30, GM
                     25, GM 60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S376"
     downshifts      complement(1112770)
                     /Source="Nicolas_upshifts"
                     /id="D577"
                     /incds=0
                     /nref=25
                     /ntot=169
                     /MaxReadThrough="3.07371"
                     /MaxDrop="4.24831"
                     /score="-1.9470655"
                     /energy="-7.1"
                     /TU="U856"
                     /idTUdmin="U856"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     CDS             complement(1112886..1114040)
                     /gene="yhjN"
                     /locus_tag="BSU_10570"
                     /old_locus_tag="BSU10570"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     22720735; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein
                     (recentHGT island)"
                     /protein_id="NP_388938.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10570"
                     /db_xref="EnsemblGenomes-Tr:CAB12897"
                     /db_xref="GOA:O07568"
                     /db_xref="InterPro:IPR007820"
                     /db_xref="InterPro:IPR017516"
                     /db_xref="SubtiList:BG13080"
                     /db_xref="UniProtKB/Swiss-Prot:O07568"
                     /translation="MKKDENLLKDLWFIAISAAGGFILSLTGISIGWMIGTLIVACCL
                     AMIRPAWLMMAPDQKGINRRWLALGQMILGIELGQKLNLSVLSVLKDHWFSVGVMLIL
                     SILLAMLSGYVLWRFSKTDMMTSFVGTAPGGLSAMPSIAQEVGANTAIVSLVQMMRVL
                     LVVLSIPFLVILIYTKQDRTASAAAETISSATTDFRLAPVLWTVILILAAWGACKAAK
                     FLKFPAPWLLGSMLGVAIVHVGGAAVTGHDMTAWWLSQANHVSQVFLGATIGSKMYKS
                     MFAGVTRIIIVGFVSSVGLIAAMFLSAVIVSELTGISLITSVLAFAPGGIAEMATTSV
                     TLHADSTFVVAVQVIRVILVIALLPPFYRLLHHLHGEKKDKKSSISGSSA*"
     gene            complement(1112886..1114040)
                     /gene="yhjN"
                     /locus_tag="BSU_10570"
                     /old_locus_tag="BSU10570"
     S_feature       complement(1114041..1114112)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1132073_1132144_c"
                     /HighExp="Cold, GM 15, GM 10, dia15, BC, BI, Salt, B60,
                     Sw, GM 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S377"
     promotor_-10    complement(1114095..1114114)
                     /Source="Nicolas_upshift_promotors"
                     /id="U856"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.414585414585415"
                     /psig="0.99000999000999"
                     /xcortree=2773
                     /SigmaFactorBS="cataagaaaagtgaatcgcttatagaaaataattcataATTT
                     CTttatcaacaaaaaTATACTATAGTAATAAATACattcactacgtgaacaattggag
                     t"
                     /listShort="S377, yhjN, S376"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1114111)
                     /Source="Nicolas_upshifts"
                     /id="U856"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.414585414585415"
                     /psig="0.99000999000999"
                     /xcortree=2773
                     /SigmaFactorBS="cataagaaaagtgaatcgcttatagaaaataattcataATTT
                     CTttatcaacaaaaaTATACTATAGTAATAAATACattcactacgtgaacaattggag
                     t"
                     /listShort="S377, yhjN, S376"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1114128..1114133)
                     /Source="Nicolas_upshift_promotors"
                     /id="U856"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.414585414585415"
                     /psig="0.99000999000999"
                     /xcortree=2773
                     /SigmaFactorBS="cataagaaaagtgaatcgcttatagaaaataattcataATTT
                     CTttatcaacaaaaaTATACTATAGTAATAAATACattcactacgtgaacaattggag
                     t"
                     /listShort="S377, yhjN, S376"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1114147..1115352)
                     /gene="yhjO"
                     /locus_tag="BSU_10580"
                     /old_locus_tag="BSU10580"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease (recent HGT island)"
                     /protein_id="NP_388939.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10580"
                     /db_xref="EnsemblGenomes-Tr:CAB12898"
                     /db_xref="GOA:O07569"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13081"
                     /db_xref="UniProtKB/Swiss-Prot:O07569"
                     /translation="MLTSFHSIKSRYTAPVRLRFFGELLTSLTGAMMGPFMVLYLHEQ
                     LNGSIMMPMLIISLQPFADIFLTLAAGRVTDRLGRRTAILTALLLQSAAMTGFVFAEH
                     AYVFAILYVMNGIGRSLYIPASRAQIAESTPESRRSEVFAVINAIYSTGLTAGPLVGM
                     LLYNHNPVWIFALDAAALFIYFLIAALKLPETKPLHPAVTPKMSASFTIYRPVLLLLL
                     LSLPISMLYAQTETTYRLFSKNMFSDYLSMLTIYSAAKALFSCVLQVPLVKGTEKLSM
                     KTILFITYICYSLAAAGFACSTSLTMLLVTAAVMTVGESIGLTHIQTFISKLAPPHLL
                     GRFYAVYGLHWDISRSIGPLAGGLILTSFGGEVIFYALAVCLLTAGLSLTYTIEKLEH
                     KVIRKVNRL*"
     gene            complement(1114147..1115352)
                     /gene="yhjO"
                     /locus_tag="BSU_10580"
                     /old_locus_tag="BSU10580"
     misc_feature    1115373..1115392
                     /Source="Nicolas_upshift_promotors"
                     /id="U857"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.699300699300699"
                     /psig="0.999000999001"
                     /xcortree=2118
                     /SigmaFactorBS="tatctcgattttatagagtgaaaactggtcaacatgtgatcg
                     ccgcctttcgctgTTTGATATAGTAGTAGTGTAtagaaggggcggcggcccaaaaagt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1115378
                     /Source="Nicolas_upshifts"
                     /id="U857"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.699300699300699"
                     /psig="0.999000999001"
                     /xcortree=2118
                     /SigmaFactorBS="tatctcgattttatagagtgaaaactggtcaacatgtgatcg
                     ccgcctttcgctgTTTGATATAGTAGTAGTGTAtagaaggggcggcggcccaaaaagt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             1115466..1117193
                     /gene="yhjP"
                     /locus_tag="BSU_10590"
                     /old_locus_tag="BSU10590"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcription factor"
                     /protein_id="NP_388940.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10590"
                     /db_xref="EnsemblGenomes-Tr:CAB12899"
                     /db_xref="GOA:O07570"
                     /db_xref="InterPro:IPR000914"
                     /db_xref="InterPro:IPR025370"
                     /db_xref="InterPro:IPR030678"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13082"
                     /db_xref="UniProtKB/Swiss-Prot:O07570"
                     /translation="MKLIEHYVALVKTGCAEYGQMNEMTLTEIADCLFCTERNAKLIL
                     HKLENSNWIIRESGAGRGRKSKIAFLRRPEELLLQTAKEYTMSGKLKKAKELLQQYQS
                     AFPGLQNEYNMWLSEVFGFVTETGENGAKDVLRLFITPESVSSLDPCQIFLRSEGHFV
                     KQIFDTLFTFDSDMQEPKPHLVHGWEEVGKKQWRFFLRKGVLFHNGQPLTSRDVAFTF
                     QRFLELADNPYKWLLHGVKQVLEKGPYCVELILDKPNALLPYALCDERLSILPAEQGG
                     GKNGTGPFQMNQQHSGMLVLEANERYFKGRPYLDRVEFVFSEQAGEMNGFTIQEKQTC
                     PEQQTVFDERHVQYLSLNLKKKGPLQHRSFRKALRLLISSERLVREAGGHRRIPVTSF
                     LHPSPFEWEGVSPSELLKKSGYEGETIVLYTFSETDHREDAEWIQNICAQHGIRLTLQ
                     FCDAADLRRPEIVQMADIIHDSATFYQDSEFGFLHLLLSENSFLYQHLSEKLTQICSG
                     MTERMFSMPDRCSRINILRDIDRQMIQELNAIPLYQNVLQVTSSKNVKGLVLDEEGWI
                     DLYSVWLSK*"
     gene            1115466..1117193
                     /gene="yhjP"
                     /locus_tag="BSU_10590"
                     /old_locus_tag="BSU10590"
     promotor_-35    1116779..1116786
                     /Source="Nicolas_upshift_promotors"
                     /id="U858"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.802197802197802"
                     /xcortree=1827
                     /SigmaFactorBS="atcatcgtgaggacgccgaatggattcaaaaTATTTGCGccc
                     agcacggtatcAGGCTTACACTTCAATTCTGtgatgctgctgatctgcgacggccgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1116801..1116820
                     /Source="Nicolas_upshift_promotors"
                     /id="U858"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.802197802197802"
                     /xcortree=1827
                     /SigmaFactorBS="atcatcgtgaggacgccgaatggattcaaaaTATTTGCGccc
                     agcacggtatcAGGCTTACACTTCAATTCTGtgatgctgctgatctgcgacggccgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1116808
                     /Source="Nicolas_upshifts"
                     /id="U858"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.531468531468531"
                     /psig="0.802197802197802"
                     /xcortree=1827
                     /SigmaFactorBS="atcatcgtgaggacgccgaatggattcaaaaTATTTGCGccc
                     agcacggtatcAGGCTTACACTTCAATTCTGtgatgctgctgatctgcgacggccgga
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             complement(1117223..1117549)
                     /gene="yhjQ"
                     /locus_tag="BSU_10600"
                     /old_locus_tag="BSU10600"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12625841; Product type
                     c: carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-chelating cysteine-rich protein
                     of unknown function"
                     /protein_id="NP_388941.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10600"
                     /db_xref="EnsemblGenomes-Tr:CAB12900"
                     /db_xref="InterPro:IPR005560"
                     /db_xref="PDB:5FIG"
                     /db_xref="SubtiList:BG13083"
                     /db_xref="UniProtKB/Swiss-Prot:O07571"
                     /translation="MEQYSEACIEACIDCMKACNHCFTKCLEESVQHHLSGCIRLDRE
                     CADICALAVKAMQTDSPFMKEICALCADICEACGTECGKHDHDHCQACAKACFTCAEQ
                     CRSMAA*"
     gene            complement(1117223..1117549)
                     /gene="yhjQ"
                     /locus_tag="BSU_10600"
                     /old_locus_tag="BSU10600"
     CDS             complement(1117667..1118104)
                     /gene="yhjR"
                     /locus_tag="BSU_10610"
                     /old_locus_tag="BSU10610"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22078549, 22882546;
                     Product type c: carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="putative electron carrier protein (putative
                     sporulation gene)"
                     /protein_id="NP_388942.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10610"
                     /db_xref="EnsemblGenomes-Tr:CAB12901"
                     /db_xref="GOA:O07572"
                     /db_xref="InterPro:IPR003251"
                     /db_xref="InterPro:IPR009078"
                     /db_xref="InterPro:IPR012347"
                     /db_xref="SubtiList:BG13084"
                     /db_xref="UniProtKB/Swiss-Prot:O07572"
                     /translation="MHYSYYPYPVPYREDPVLIRNLQKAINGEFSAIQCYRKLAELAH
                     SDEVRKQIEEIRRDEIRHLREFSTLYGSITGKHIMPKQTEECPDNFTRGLDAAFKDEQ
                     ETVDFYLRAAEETSNLKAKGVFTRAARDEQNHAVWFLYYLMER*"
     gene            complement(1117667..1118104)
                     /gene="yhjR"
                     /locus_tag="BSU_10610"
                     /old_locus_tag="BSU10610"
     downshifts      complement(1117676)
                     /Source="Nicolas_upshifts"
                     /id="D578"
                     /incds=0
                     /nref=1
                     /ntot=10
                     /MaxReadThrough="3.72767"
                     /MaxDrop="3.86885"
                     /score="16.2430017"
                     /energy="-11.5"
                     /TU="U859"
                     /idTUdmin="U859"
                     /TUdmin="-440"
                     /isTUend="FALSE"
     promotor_-10    complement(1118135..1118154)
                     /Source="Nicolas_upshift_promotors"
                     /id="U859"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1267
                     /SigmaFactorBS="tggtaaaaacggccttttcacatataaaaagctgattatCTC
                     CGCACATctctccctgcccAACATATACTTTTACAGAAGcccaattcctaagaatgga
                     g"
                     /listShort="yhjR, yhjQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1118155)
                     /Source="Nicolas_upshifts"
                     /id="U859"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1267
                     /SigmaFactorBS="tggtaaaaacggccttttcacatataaaaagctgattatCTC
                     CGCACATctctccctgcccAACATATACTTTTACAGAAGcccaattcctaagaatgga
                     g"
                     /listShort="yhjR, yhjQ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1118167..1118176)
                     /Source="Nicolas_upshift_promotors"
                     /id="U859"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1267
                     /SigmaFactorBS="tggtaaaaacggccttttcacatataaaaagctgattatCTC
                     CGCACATctctccctgcccAACATATACTTTTACAGAAGcccaattcctaagaatgga
                     g"
                     /listShort="yhjR, yhjQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1118224..1118231
                     /Source="Nicolas_upshift_promotors"
                     /id="U860"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig=1
                     /xcortree=1809
                     /SigmaFactorBS="gaaaaggccgtttttaccaatagatcaGATTGGTCattttcg
                     tcaacaTTCGATAAAATATAGAGAGAtaaaaagagaggggtcttctaatttgggagca
                     g"
                     /listShort="addB, addA, S378, sbcD, sbcC, yisB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1118245..1118264
                     /Source="Nicolas_upshift_promotors"
                     /id="U860"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig=1
                     /xcortree=1809
                     /SigmaFactorBS="gaaaaggccgtttttaccaatagatcaGATTGGTCattttcg
                     tcaacaTTCGATAAAATATAGAGAGAtaaaaagagaggggtcttctaatttgggagca
                     g"
                     /listShort="addB, addA, S378, sbcD, sbcC, yisB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1118257
                     /Source="Nicolas_upshifts"
                     /id="U860"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.875124875124875"
                     /psig=1
                     /xcortree=1809
                     /SigmaFactorBS="gaaaaggccgtttttaccaatagatcaGATTGGTCattttcg
                     tcaacaTTCGATAAAATATAGAGAGAtaaaaagagaggggtcttctaatttgggagca
                     g"
                     /listShort="addB, addA, S378, sbcD, sbcC, yisB"
                     /GFF_Attribute="listLong"
     CDS             1118288..1121788
                     /gene="addB"
                     /locus_tag="BSU_10620"
                     /old_locus_tag="BSU10620"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:7746142, 8387145, 8510642, 8752323, 11544244,
                     16385024, 16780573, 19542287, 21071401, 22307084,
                     24670664, 26762979"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7746142, 8387145,
                     8510642, 8752323, 11544244, 16385024, 16780573, 19542287,
                     21071401, 22307084, 24670664, 26762979; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent deoxyribonuclease (subunit B)"
                     /protein_id="NP_388943.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10620"
                     /db_xref="EnsemblGenomes-Tr:CAB12902"
                     /db_xref="GOA:P23477"
                     /db_xref="InterPro:IPR014016"
                     /db_xref="InterPro:IPR014017"
                     /db_xref="InterPro:IPR014140"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="PDB:3U44"
                     /db_xref="PDB:3U4Q"
                     /db_xref="PDB:4CEH"
                     /db_xref="PDB:4CEI"
                     /db_xref="PDB:4CEJ"
                     /db_xref="SubtiList:BG10465"
                     /db_xref="UniProtKB/Swiss-Prot:P23477"
                     /translation="MGAEFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMT
                     FLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSRPFLTSTGVQMLLRKLIEE
                     HKQEFKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESGTASEYRGERVLSE
                     KLHDLSILYQQMEKSLADQYLHSEDYLTLLAEHIPLAEDIKGAHIYVDGFYQFTPQEF
                     RVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYK
                     ELSGTERHTKTPELAHLEAQYEARPAIPYAEKQEALTVMQAANRRAELEGIAREIHAL
                     VREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLD
                     VLKGNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQLENYCIAYGIKGDRWTKGDRFQ
                     YRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYRY
                     LEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLFQ
                     QMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVL
                     SDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPS
                     MIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQSFTASQLRLWTREYDIS
                     DVWWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETF
                     NACPFSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLREQKLDWRDLTKEQC
                     ELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGL
                     ELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSSDKGLDLA
                     EVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHIHDPMIQSNLPLGLDEIEQE
                     IFKKFKMKGLLLGDQEVVRLMDTTLQEGRSNIINAGLKKDGSLRSDSAAVGEKEFDLL
                     TKHVRRTFQEAGEQITDGRVSIEPYKMKNKTPCTYCAFKSVCQFDESLEENEYRPLKA
                     EKDKTILEWIKKEADGNEHS*"
     gene            1118288..1121788
                     /gene="addB"
                     /locus_tag="BSU_10620"
                     /old_locus_tag="BSU10620"
     CDS             1121775..1125473
                     /gene="addA"
                     /locus_tag="BSU_10630"
                     /old_locus_tag="BSU10630"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:7746142, 8387145, 8510642, 8752323, 11544244,
                     16385024, 16780573, 19542287, 21071401, 22307084,
                     24670664, 26762979"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7746142, 8387145,
                     8510642, 8752323, 11544244, 16385024, 16780573, 19542287,
                     21071401, 22307084, 24670664, 26762979; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent deoxyribonuclease (subunit A)"
                     /protein_id="NP_388944.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10630"
                     /db_xref="EnsemblGenomes-Tr:CAB12903"
                     /db_xref="GOA:P23478"
                     /db_xref="InterPro:IPR000212"
                     /db_xref="InterPro:IPR011335"
                     /db_xref="InterPro:IPR011604"
                     /db_xref="InterPro:IPR014016"
                     /db_xref="InterPro:IPR014017"
                     /db_xref="InterPro:IPR014152"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR034739"
                     /db_xref="PDB:3U44"
                     /db_xref="PDB:3U4Q"
                     /db_xref="PDB:4CEH"
                     /db_xref="PDB:4CEI"
                     /db_xref="PDB:4CEJ"
                     /db_xref="SubtiList:BG10466"
                     /db_xref="UniProtKB/Swiss-Prot:P23478"
                     /translation="MNIPKPADSTWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERM
                     IRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQRPGSLHIRRQLSLLN
                     RASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAKGEKA
                     FFELVDRYTTDRHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSAIEELPF
                     YQYVKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSE
                     LYKRVPAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKS
                     LAEMKPVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSE
                     AARFYQEQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAE
                     PLLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQ
                     AELKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSP
                     FKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVA
                     VALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGD
                     RSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANL
                     RVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKG
                     LEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMR
                     RELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAR
                     TYLDFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKS
                     ERLEAIRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYS
                     GRAPVKPADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHR
                     LYEKELLTEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAH
                     EADEPLLVQGIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLY
                     TKAVEQIAKTKVKGCALYFFDGGHILTL*"
     gene            1121775..1125473
                     /gene="addA"
                     /locus_tag="BSU_10630"
                     /old_locus_tag="BSU10630"
     S_feature       1125474..1125544
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1143506_1143576"
                     /HighExp="H2O2, C90, Heat, LBGtran, dia15, HiTm, Diami,
                     C30, Lbtran, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S378"
     CDS             1125545..1126720
                     /gene="sbcD"
                     /locus_tag="BSU_10640"
                     /old_locus_tag="BSU10640"
                     /function="16.6: Maintain"
                     /function="16.9: Replicate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7968921, 8493111, 16780573"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7968921, 8493111,
                     16780573; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair exonuclease"
                     /protein_id="NP_388945.3"
                     /db_xref="EnsemblGenomes-Gn:BSU10640"
                     /db_xref="EnsemblGenomes-Tr:CAB12904"
                     /db_xref="GOA:P23479"
                     /db_xref="InterPro:IPR004593"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR026843"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="SubtiList:BG10467"
                     /db_xref="UniProtKB/Swiss-Prot:P23479"
                     /translation="MRILHTADWHLGKTLEGRSRLSEQADVLDELNTIVKDEQIDAIV
                     MAGDAFDTVNPPALAEQLFYESLSALSDRGKRPIVVIAGNHDNPDRLSAASPLTHENG
                     IHLIGYPTTEPIHIEVPSAGELLAVGALAYPSEARLNEVLSDTFDEKLLRDHYDVKIR
                     QAFEHMTSRFRTDAVKIAASHIYVAGGNQTDSERPIEVGGAYTVAAESLPADAAYVAL
                     GHLHRPQTIKRARTLARYSGSPLAYSFSEAGYAKSVTIVDAKPGEEATWQEVLLSSGK
                     PLVKWKAANGLSEVYSWLDEGRDQNAWIDLEIRVADQLSLEEIHRLRKAHPGFIHIRP
                     VFEEQNKDRERIEVKHVSIEDRFKKFYEKQTGGAVPDEEMVKLFLELASGVEEEDAK*
                     "
     gene            1125545..1126720
                     /gene="sbcD"
                     /locus_tag="BSU_10640"
                     /old_locus_tag="BSU10640"
     CDS             1126717..1130109
                     /gene="sbcC"
                     /locus_tag="BSU_10650"
                     /old_locus_tag="BSU10650"
                     /function="16.9: Replicate"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16780573, 19906728"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16780573, 19906728;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ATP-dependent repair enzyme"
                     /protein_id="NP_388946.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10650"
                     /db_xref="EnsemblGenomes-Tr:CAB12905"
                     /db_xref="GOA:O06714"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13088"
                     /db_xref="UniProtKB/Swiss-Prot:O06714"
                     /translation="MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSI
                     LDAMTLALYGKVERAANNTHGILNHAEDTLSVSFTFALQTNHQISYKVERVFKRTDEM
                     KVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
                     KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQA
                     EKVLEQAEARLEAMRKNRDQAKERFTEHQEIWNVQKEKSTYEEEEKRLAEEQPHIDSM
                     QKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADRTAFFQQKHEEYEAW
                     RQHKSEKEPELLAKQEQLSRLQEIEIKLSEAKQEEERKKADLRQKEEALQSVMNELET
                     VTDRLTRGQNRQTELKQQLKSLQVTSDERKSCQQAAEMALRIRQTEEQIKKEKKRSEE
                     LNLVLQKMNEEKNTLVQKTEAEENNIIQAYEAVQTVYHLVCETERSLTRMTEEARKSQ
                     HTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSHLEEDIK
                     RTDVLLTEAAALSQEILSAKIMLEEQSARFIEQCPFLQTIQAQNLEAAASFEHQPVYE
                     AFETAKFEWKRIKQDILSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESII
                     SELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDRAAEECEKRIEKSIAFLAEHE
                     AQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDL
                     KLLKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSI
                     TRTEEVEQSLIPADELEKMKTGIDQFMDKLKQNAANLKRVAEILAGRALSESEWNETV
                     AALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQMHIDRLDKLQAVF
                     KGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVS
                     SLSGGETFLTSLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQ
                     SDNLAVGVISHVQELRARLPKKLIVHPAEPSGRGTRVSLELM*"
     gene            1126717..1130109
                     /gene="sbcC"
                     /locus_tag="BSU_10650"
                     /old_locus_tag="BSU10650"
     promotor_-35    1129364..1129370
                     /Source="Nicolas_upshift_promotors"
                     /id="U861"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=813
                     /SigmaFactorBS="tgaaaagatgaaaaccggcatagaccagtttaTGGATAAact
                     gaagcaaaatgCTGCAAACTTAAaacgagtagcagagatacttgccggcagagcatta
                     t"
                     /listShort="yisB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1129385..1129396
                     /Source="Nicolas_upshift_promotors"
                     /id="U861"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=813
                     /SigmaFactorBS="tgaaaagatgaaaaccggcatagaccagtttaTGGATAAact
                     gaagcaaaatgCTGCAAACTTAAaacgagtagcagagatacttgccggcagagcatta
                     t"
                     /listShort="yisB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1129392
                     /Source="Nicolas_upshifts"
                     /id="U861"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99000999000999"
                     /psig="0.99000999000999"
                     /xcortree=813
                     /SigmaFactorBS="tgaaaagatgaaaaccggcatagaccagtttaTGGATAAact
                     gaagcaaaatgCTGCAAACTTAAaacgagtagcagagatacttgccggcagagcatta
                     t"
                     /listShort="yisB"
                     /GFF_Attribute="listLong"
     S_feature       complement(1129461..1130434)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1147493_1148466_c"
                     /HighExp="S6, S8, S7, BT, C30, B36, S5, C90, Pyr, B60"
                     /AntisenseName="yisB"
                     /AntisenseCor="0.19649597897587401"
                     /AntisenseRegPval="-2.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="SigK"
                     /TUlongPSig="0.992"
                     /label="S379"
     CDS             1130123..1130425
                     /gene="hlpB"
                     /locus_tag="BSU_10660"
                     /old_locus_tag="BSU10660"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:16780573, 22984257"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16780573, 22984257;
                     Product type ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH nuclease-like essential for DNA repair"
                     /protein_id="NP_388947.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10660"
                     /db_xref="EnsemblGenomes-Tr:CAB12906"
                     /db_xref="SubtiList:BG13089"
                     /db_xref="UniProtKB/Swiss-Prot:O06715"
                     /translation="MAKQIAGICELCGRSDVQLTEHHLTPKEEGGTFLPTAMLCIPCH
                     KQIHALYTNQELAVRLNGMAELRSDPELARFVKWIRKQPPEKLIKTKKSNERKKKK*"
     gene            1130123..1130425
                     /gene="hlpB"
                     /locus_tag="BSU_10660"
                     /old_locus_tag="BSU10660"
     downshifts      1130405
                     /Source="Nicolas_upshifts"
                     /id="D579"
                     /incds=0
                     /nref=230
                     /ntot=269
                     /MaxReadThrough="1.42126"
                     /MaxDrop="6.71114"
                     /score="0.317490594"
                     /energy="-14.3"
                     /TU="NA"
                     /idTUdmin="U861"
                     /TUdmin=1
                     /isTUend="TRUE"
     CDS             complement(1130462..1130680)
                     /gene="gerPF"
                     /locus_tag="BSU_10670"
                     /old_locus_tag="BSU10670"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007, 20161744"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007, 20161744;
                     Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388948.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10670"
                     /db_xref="EnsemblGenomes-Tr:CAB12907"
                     /db_xref="GOA:O06716"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG13090"
                     /db_xref="UniProtKB/Swiss-Prot:O06716"
                     /translation="MPAIVGPIAINSISGGVVNFGDSFYLSPKSSSKSALGSGAGNTG
                     DFLLLNNAVNATNYIDPDVNDQDMVGNG*"
     gene            complement(1130462..1130680)
                     /gene="gerPF"
                     /locus_tag="BSU_10670"
                     /old_locus_tag="BSU10670"
     downshifts      complement(1130479)
                     /Source="Nicolas_upshifts"
                     /id="D580"
                     /incds=0
                     /nref=40
                     /ntot=66
                     /MaxReadThrough="3.93344"
                     /MaxDrop="5.39228"
                     /score="13.5435041"
                     /energy="-15.3"
                     /TU="U863"
                     /idTUdmin="U863"
                     /TUdmin="-989"
                     /isTUend="FALSE"
     CDS             complement(1130712..1131113)
                     /gene="gerPE"
                     /locus_tag="BSU_10680"
                     /old_locus_tag="BSU10680"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388949.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10680"
                     /db_xref="EnsemblGenomes-Tr:CAB12908"
                     /db_xref="GOA:O06717"
                     /db_xref="InterPro:IPR024496"
                     /db_xref="SubtiList:BG13091"
                     /db_xref="UniProtKB/Swiss-Prot:O06717"
                     /translation="MLKRISRIRLVKFNSLGIASVFQVGDTNEIDMSVKVFAVQRSLS
                     TFYHNEGSFNKKEYQIFQQQAVKPLPETGVQSAFCHEVPAIYVRSIKIQGVSASSVLH
                     AGSASLIRGDARLKHIRQIQSPRSQSPAKNI*"
     gene            complement(1130712..1131113)
                     /gene="gerPE"
                     /locus_tag="BSU_10680"
                     /old_locus_tag="BSU10680"
     CDS             complement(1131113..1131289)
                     /gene="gerPD"
                     /locus_tag="BSU_10690"
                     /old_locus_tag="BSU10690"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388950.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10690"
                     /db_xref="EnsemblGenomes-Tr:CAB12909"
                     /db_xref="GOA:O06718"
                     /db_xref="InterPro:IPR017257"
                     /db_xref="SubtiList:BG13092"
                     /db_xref="UniProtKB/Swiss-Prot:O06718"
                     /translation="MIFTVINRSLEVGDIRMNGVSSSSVFHIGDTESIYLSSIFDTPP
                     ESLIIGPFAPLAPE*"
     gene            complement(1131113..1131289)
                     /gene="gerPD"
                     /locus_tag="BSU_10690"
                     /old_locus_tag="BSU10690"
     CDS             complement(1131286..1131903)
                     /gene="gerPC"
                     /locus_tag="BSU_10700"
                     /old_locus_tag="BSU10700"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388951.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10700"
                     /db_xref="EnsemblGenomes-Tr:CAB12910"
                     /db_xref="GOA:O06719"
                     /db_xref="InterPro:IPR019673"
                     /db_xref="SubtiList:BG13093"
                     /db_xref="UniProtKB/Swiss-Prot:O06719"
                     /translation="MYDQSVSSYLQNLNSFVQQQAIHIQQLERQLKEIQTEMNTMKQR
                     PATTIERVEYKFDQLKIERLDGTLNIGLNPTDPNSVQNFDVSQSTPQIGMMQQEESAQ
                     LMQQIRQNVDMYLTEEIPDILEQLENQYDSRLDDTNRHHVIEDIRKQMDSRIHYYMSH
                     IKKEENTPPAQYAEHIAEHVKRDVIRAVEHFLEHIPSEMKGDEQA*"
     gene            complement(1131286..1131903)
                     /gene="gerPC"
                     /locus_tag="BSU_10700"
                     /old_locus_tag="BSU10700"
     CDS             complement(1131926..1132159)
                     /gene="gerPB"
                     /locus_tag="BSU_10710"
                     /old_locus_tag="BSU10710"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388952.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10710"
                     /db_xref="EnsemblGenomes-Tr:CAB12911"
                     /db_xref="GOA:O06720"
                     /db_xref="InterPro:IPR024255"
                     /db_xref="SubtiList:BG13094"
                     /db_xref="UniProtKB/Swiss-Prot:O06720"
                     /translation="MNFYINQTIQINYLRLESISNSSILQIGSAGSIKSLSNLYNTGS
                     YVEPAPEVSGSGQPLQLQEPDTGSLVPLQPPGR*"
     gene            complement(1131926..1132159)
                     /gene="gerPB"
                     /locus_tag="BSU_10710"
                     /old_locus_tag="BSU10710"
     CDS             complement(1132174..1132395)
                     /gene="gerPA"
                     /locus_tag="BSU_10720"
                     /old_locus_tag="BSU10720"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:10715007"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10715007; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore germination protein"
                     /protein_id="NP_388953.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10720"
                     /db_xref="EnsemblGenomes-Tr:CAB12912"
                     /db_xref="GOA:O06721"
                     /db_xref="InterPro:IPR019618"
                     /db_xref="SubtiList:BG13095"
                     /db_xref="UniProtKB/Swiss-Prot:O06721"
                     /translation="MPAIVGAFKINAIGTSGVVHIGDCITISPQAQVRTFAGAGSFNT
                     GDSLKVMNYQNATNVYDNDAVDQPIVANA*"
     gene            complement(1132174..1132395)
                     /gene="gerPA"
                     /locus_tag="BSU_10720"
                     /old_locus_tag="BSU10720"
     S_feature       complement(1132396..1132482)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1150428_1150514_c"
                     /HighExp="S6, S8, S7, S5, BT, B36, B60, G/S, Pyr, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="SigK"
                     /TUlongPSig="0.992"
                     /label="S380"
     promotor_-35    1132410..1132416
                     /Source="Nicolas_upshift_promotors"
                     /id="U862"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.473526473526474"
                     /psig="0.733266733266733"
                     /xcortree=136
                     /SigmaFactorBS="aaacgctccgacaatggccggcatacgagcacatccttTGTT
                     GAAaaattaaaaaaagACAGGTAAAGTGAAATGACAattccgatttcaattgggctat
                     t"
                     /listShort="S381, S385"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1132430..1132449
                     /Source="Nicolas_upshift_promotors"
                     /id="U862"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.473526473526474"
                     /psig="0.733266733266733"
                     /xcortree=136
                     /SigmaFactorBS="aaacgctccgacaatggccggcatacgagcacatccttTGTT
                     GAAaaattaaaaaaagACAGGTAAAGTGAAATGACAattccgatttcaattgggctat
                     t"
                     /listShort="S381, S385"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1132432..1133087
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1150464_1151119"
                     /HighExp="Salt, BC, Sw, S8, Heat, M9-stat, S7, Etha, BMM,
                     Lbtran"
                     /AntisenseName="yisI"
                     /AntisenseCor="3.97396613023396E-2"
                     /AntisenseRegPval="-0.3"
                     /CDS_PredictionProba="0.17396"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.733"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S381"
     upshifts        1132432
                     /Source="Nicolas_upshifts"
                     /id="U862"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.473526473526474"
                     /psig="0.733266733266733"
                     /xcortree=136
                     /SigmaFactorBS="aaacgctccgacaatggccggcatacgagcacatccttTGTT
                     GAAaaattaaaaaaagACAGGTAAAGTGAAATGACAattccgatttcaattgggctat
                     t"
                     /listShort="S381, S385"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1132469..1132488)
                     /Source="Nicolas_upshift_promotors"
                     /id="U863"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1293
                     /SigmaFactorBS="ttcacaaagagccgatatgtccccttaaaattTCTCTCACAC
                     atatgtgcgtttGTCATAAGCTATCGTGAATAgcccaattgaaatcggaattgtcatt
                     t"
                     /listShort="S380, gerPA, gerPB, gerPC, gerPD, gerPE,
                     gerPF, S379"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1132482)
                     /Source="Nicolas_upshifts"
                     /id="U863"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1293
                     /SigmaFactorBS="ttcacaaagagccgatatgtccccttaaaattTCTCTCACAC
                     atatgtgcgtttGTCATAAGCTATCGTGAATAgcccaattgaaatcggaattgtcatt
                     t"
                     /listShort="S380, gerPA, gerPB, gerPC, gerPD, gerPE,
                     gerPF, S379"
                     /GFF_Attribute="listLong"
     S_feature       complement(1132484..1132613)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1150516_1150645_c"
                     /HighExp="S6, S8, S7, T5.0H, T3.30H, T4.0H, S5, T3.0H,
                     T2.30H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S382"
     promotor_-35    complement(1132501..1132510)
                     /Source="Nicolas_upshift_promotors"
                     /id="U863"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1293
                     /SigmaFactorBS="ttcacaaagagccgatatgtccccttaaaattTCTCTCACAC
                     atatgtgcgtttGTCATAAGCTATCGTGAATAgcccaattgaaatcggaattgtcatt
                     t"
                     /listShort="S380, gerPA, gerPB, gerPC, gerPD, gerPE,
                     gerPF, S379"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(1132615..1132817)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1150647_1150849_c"
                     /HighExp="T5.0H, T4.0H, T3.30H, S6, M9-stat, T3.0H, S8,
                     S7, T2.30H, S5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigK"
                     /TUshortPSig="0.976, 0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S383"
     downshifts      complement(1132658)
                     /Source="Nicolas_upshifts"
                     /id="D581"
                     /incds=0
                     /nref=13
                     /ntot=116
                     /MaxReadThrough="3.97434"
                     /MaxDrop="3.59184"
                     /score="13.5435041"
                     /energy="-15.3"
                     /TU="U865"
                     /idTUdmin="U864"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1132818..1132988)
                     /gene="pchI"
                     /locus_tag="BSU_10730"
                     /old_locus_tag="BSU10730"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11679073, 27542896"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11679073, 27542896;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="Spo0A-P phosphatase (iron-metabolism related)"
                     /protein_id="NP_388954.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10730"
                     /db_xref="EnsemblGenomes-Tr:CAB12913"
                     /db_xref="GOA:O06722"
                     /db_xref="InterPro:IPR018540"
                     /db_xref="InterPro:IPR037208"
                     /db_xref="SubtiList:BG13096"
                     /db_xref="UniProtKB/Swiss-Prot:O06722"
                     /translation="MNSKIEEMRITLIETAQKYGMNSKETIQCSQELDILLNTRIKEE
                     MIFGRYLENSRM*"
     gene            complement(1132818..1132988)
                     /gene="pchI"
                     /locus_tag="BSU_10730"
                     /old_locus_tag="BSU10730"
     misc_feature    complement(1133032..1133051)
                     /Source="Nicolas_upshift_promotors"
                     /id="U864"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.976023976023976"
                     /xcortree=2921
                     /SigmaFactorBS="gcttttttagtcaaattgacgaaaggcaaccttttgagccaa
                     aaTAGGTTATACTAACGATATCctgtatttatatcaaaataaaatctagaattggaga
                     t"
                     /listShort="yisI, S383"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1133035)
                     /Source="Nicolas_upshifts"
                     /id="U864"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.386613386613387"
                     /psig="0.976023976023976"
                     /xcortree=2921
                     /SigmaFactorBS="gcttttttagtcaaattgacgaaaggcaaccttttgagccaa
                     aaTAGGTTATACTAACGATATCctgtatttatatcaaaataaaatctagaattggaga
                     t"
                     /listShort="yisI, S383"
                     /GFF_Attribute="listLong"
     S_feature       complement(1133037..1133133)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1151069_1151165_c"
                     /HighExp="S6, S8, S7, S5, BT, Pyr, G/S, Glucon, SMMPr,
                     C30"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S384"
     downshifts      1133044
                     /Source="Nicolas_upshifts"
                     /id="D582"
                     /incds=0
                     /nref=3
                     /ntot=54
                     /MaxReadThrough="4.52913"
                     /MaxDrop="3.35342"
                     /score="12.6645711"
                     /energy="-10.3"
                     /TU="U862"
                     /idTUdmin="U862"
                     /TUdmin="-176"
                     /isTUend="FALSE"
     S_feature       1133089..1133253
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1151121_1151285"
                     /HighExp="Salt, S8, S7, BC, Heat, H2O2, Sw, Oxctl, MG-0.2,
                     MG-0.1"
                     /AntisenseName="yisJ"
                     /AntisenseCor="0.24461808844813801"
                     /AntisenseRegPval="-4.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.733"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S385"
     CDS             complement(1133134..1134057)
                     /gene="yisJ"
                     /locus_tag="BSU_10740"
                     /old_locus_tag="BSU10740"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore coat protein, CotH paralog"
                     /protein_id="NP_388955.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10740"
                     /db_xref="EnsemblGenomes-Tr:CAB12914"
                     /db_xref="GOA:O06723"
                     /db_xref="InterPro:IPR014867"
                     /db_xref="SubtiList:BG13097"
                     /db_xref="UniProtKB/Swiss-Prot:O06723"
                     /translation="MERVHLFFHREQLKRKGTAKGLFVTDRSVSPILLTQRDRAEKAS
                     YEISWEKSLLGERTLFLNAEQDDPSLMRRRLAYCFFDQIGVPAPVASYSFLTINGQPE
                     GIYLNIKNHQPAGKRSYGVKTADPRVPLSLFNNDSSAFLHEFFILIRTAGDDELAERI
                     KLYLDVKLFFLWLIGNTCTNQGFYYTFCLNESGRLYVSPMETRSLAVQEWYEEDPLLT
                     KGKTLSSRLLSIPAFRSQYHTLMKNVLKRSFTIERLSPLINEWHLDICQSAADDPFIK
                     KSPFQIEKEQTNILREIEERQDFLQAHLARL*"
     gene            complement(1133134..1134057)
                     /gene="yisJ"
                     /locus_tag="BSU_10740"
                     /old_locus_tag="BSU10740"
     promotor_-10    complement(1134079..1134098)
                     /Source="Nicolas_upshift_promotors"
                     /id="U865"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1372
                     /SigmaFactorBS="aaatccctttttctcaattccgttttcatTTCGTTTCAGgac
                     gggcttgctcTACATATCATACAAATGTCGttttgagaaggaggaaagaatatggagc
                     g"
                     /listShort="yisJ, S384, yisI, S383, S382"
                     /listLong="S380, gerPA, gerPB, gerPC, gerPD, gerPE, gerPF,
                     S379"
                     /label="promotor_-10"
     upshifts        complement(1134090)
                     /Source="Nicolas_upshifts"
                     /id="U865"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1372
                     /SigmaFactorBS="aaatccctttttctcaattccgttttcatTTCGTTTCAGgac
                     gggcttgctcTACATATCATACAAATGTCGttttgagaaggaggaaagaatatggagc
                     g"
                     /listShort="yisJ, S384, yisI, S383, S382"
                     /listLong="S380, gerPA, gerPB, gerPC, gerPD, gerPE, gerPF,
                     S379"
     promotor_-35    complement(1134112..1134121)
                     /Source="Nicolas_upshift_promotors"
                     /id="U865"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.992007992007992"
                     /psig="0.992007992007992"
                     /xcortree=1372
                     /SigmaFactorBS="aaatccctttttctcaattccgttttcatTTCGTTTCAGgac
                     gggcttgctcTACATATCATACAAATGTCGttttgagaaggaggaaagaatatggagc
                     g"
                     /listShort="yisJ, S384, yisI, S383, S382"
                     /listLong="S380, gerPA, gerPB, gerPC, gerPD, gerPE, gerPF,
                     S379"
                     /label="promotor_-35"
     promotor_-35    1134141..1134149
                     /Source="Nicolas_upshift_promotors"
                     /id="U866"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=553
                     /SigmaFactorBS="cccgtcctgaaacgaaatgaaaacggaattgagaaAAAGGGA
                     TTtcagcattcgaCAGAGAATACATGAAGGAGcattctgatttaaaagatgatggagg
                     a"
                     /listShort="yisK, S386, yisL"
                     /listLong="wprA"
                     /label="promotor_-35"
     promotor_-10    1134161..1134179
                     /Source="Nicolas_upshift_promotors"
                     /id="U866"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=553
                     /SigmaFactorBS="cccgtcctgaaacgaaatgaaaacggaattgagaaAAAGGGA
                     TTtcagcattcgaCAGAGAATACATGAAGGAGcattctgatttaaaagatgatggagg
                     a"
                     /listShort="yisK, S386, yisL"
                     /listLong="wprA"
                     /label="promotor_-10"
     upshifts        1134166
                     /Source="Nicolas_upshifts"
                     /id="U866"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=553
                     /SigmaFactorBS="cccgtcctgaaacgaaatgaaaacggaattgagaaAAAGGGA
                     TTtcagcattcgaCAGAGAATACATGAAGGAGcattctgatttaaaagatgatggagg
                     a"
                     /listShort="yisK, S386, yisL"
                     /listLong="wprA"
     CDS             1134212..1135117
                     /gene="mblK"
                     /locus_tag="BSU_10750"
                     /old_locus_tag="BSU10750"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:16847875, 27215790, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16847875, 27215790,
                     22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase/isomerase involved in remodelling the
                     bacterial envelope"
                     /protein_id="NP_388956.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10750"
                     /db_xref="EnsemblGenomes-Tr:CAB12915"
                     /db_xref="GOA:O06724"
                     /db_xref="InterPro:IPR011234"
                     /db_xref="InterPro:IPR036663"
                     /db_xref="SubtiList:BG13098"
                     /db_xref="UniProtKB/Swiss-Prot:O06724"
                     /translation="MKFATGELYNRMFVGLIIDDEKIMDLQKAEKKLFELETIPGSLI
                     ECIAEGDKFVAHARQLAEWAKKPNDELGSFMYSLSEVKLHAPIPKPSKNIICIGKNYR
                     DHAIEMGSEADIPEHPMVFTKSPVTVTGHGDIVKSHEEVTSQLDYEGELAVVIGKSGT
                     RISKEDAYDHVFGYTIVNDITARDLQKRHKQFFIGKSLDTTCPMGPVLVHKSSIQEPE
                     RLKVETRVNGELRQSGSASDMIFSIPELIETLSKGMTLEAGDIIATGTPSGVGKGFTP
                     PKFLRSGDKIDITIDPIGTLSNQIG*"
     gene            1134212..1135117
                     /gene="mblK"
                     /locus_tag="BSU_10750"
                     /old_locus_tag="BSU10750"
     S_feature       1135118..1135198
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1153150_1153230"
                     /HighExp="S2, Lbstat, S1, Etha, SMMPr, M0t90, M40t90,
                     LoTm, T-4.40H, nit"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S386"
     promotor_-35    1135168..1135171
                     /Source="Nicolas_upshift_promotors"
                     /id="U867"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=2462
                     /SigmaFactorBS="gacccgcccgttttttctgataatcatcTTTGtgacagagga
                     caagttCATGGTACTATAAGTGGGGTaatttatctgatagggggaacatatatgacac
                     a"
                     /listShort="yisL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1135188..1135207
                     /Source="Nicolas_upshift_promotors"
                     /id="U867"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=2462
                     /SigmaFactorBS="gacccgcccgttttttctgataatcatcTTTGtgacagagga
                     caagttCATGGTACTATAAGTGGGGTaatttatctgatagggggaacatatatgacac
                     a"
                     /listShort="yisL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1135200
                     /Source="Nicolas_upshifts"
                     /id="U867"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=2462
                     /SigmaFactorBS="gacccgcccgttttttctgataatcatcTTTGtgacagagga
                     caagttCATGGTACTATAAGTGGGGTaatttatctgatagggggaacatatatgacac
                     a"
                     /listShort="yisL"
                     /GFF_Attribute="listLong"
     CDS             1135233..1135589
                     /gene="yisL"
                     /locus_tag="BSU_10760"
                     /old_locus_tag="BSU10760"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     27215790; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388957.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10760"
                     /db_xref="EnsemblGenomes-Tr:CAB12916"
                     /db_xref="GOA:O06725"
                     /db_xref="InterPro:IPR010899"
                     /db_xref="SubtiList:BG13099"
                     /db_xref="UniProtKB/Swiss-Prot:O06725"
                     /translation="MTHLHITTWVVALILLFVSYSLYSSGSAKGAKITHMILRLFYIL
                     IILTGAELFVRFANWNGEYAGKMILGIITIGLMEMLLIRKKKEKSTGGLWVGFVIVLL
                     LTVLLGLHLPIGFQLF*"
     gene            1135233..1135589
                     /gene="yisL"
                     /locus_tag="BSU_10760"
                     /old_locus_tag="BSU10760"
     downshifts      1135486
                     /Source="Nicolas_upshifts"
                     /id="D583"
                     /incds=1
                     /nref=1
                     /ntot=44
                     /MaxReadThrough="4.28837"
                     /MaxDrop="2.46999"
                     /score="41.4247437"
                     /energy="-11.7"
                     /TU="U866,U867"
                     /idTUdmin="U867"
                     /TUdmin="-88"
                     /isTUend="FALSE"
     downshifts      1135577
                     /Source="Nicolas_upshifts"
                     /id="D584"
                     /incds=0
                     /nref=17
                     /ntot=162
                     /MaxReadThrough="3.06092"
                     /MaxDrop="3.41506"
                     /score="41.4247437"
                     /energy="-11.7"
                     /TU="U866"
                     /idTUdmin="U867"
                     /TUdmin=3
                     /isTUend="TRUE"
     upshifts        1135710
                     /Source="Nicolas_upshifts"
                     /id="U868"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.486513486513487"
                     /psig="0.732267732267732"
                     /xcortree=2782
                     /SigmaFactorBS="atattccaaatcatttaaaataaccttaaaattccctgtaag
                     cggtatctcgtcctatgaaatTATGATACCTTCAAGGAGATtcattattttgcaggag
                     g"
                     /listShort="wprA"
                     /GFF_Attribute="listLong"
     misc_feature    1135713..1135732
                     /Source="Nicolas_upshift_promotors"
                     /id="U868"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.486513486513487"
                     /psig="0.732267732267732"
                     /xcortree=2782
                     /SigmaFactorBS="atattccaaatcatttaaaataaccttaaaattccctgtaag
                     cggtatctcgtcctatgaaatTATGATACCTTCAAGGAGATtcattattttgcaggag
                     g"
                     /listShort="wprA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             1135757..1138441
                     /gene="wprA"
                     /locus_tag="BSU_10770"
                     /old_locus_tag="BSU10770"
                     /EC_number="3.4.21.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9004506, 9675284, 10336490, 15205417, 17269748,
                     21636651, 23180473, 25313396"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9004506, 9675284,
                     10336490, 15205417, 17269748, 21636651, 23180473,
                     25313396; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-associated protease"
                     /protein_id="NP_388958.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10770"
                     /db_xref="EnsemblGenomes-Tr:CAB12917"
                     /db_xref="GOA:P54423"
                     /db_xref="InterPro:IPR000209"
                     /db_xref="InterPro:IPR015500"
                     /db_xref="InterPro:IPR022398"
                     /db_xref="InterPro:IPR023828"
                     /db_xref="InterPro:IPR034084"
                     /db_xref="InterPro:IPR036852"
                     /db_xref="SubtiList:BG11846"
                     /db_xref="UniProtKB/Swiss-Prot:P54423"
                     /translation="MKRRKFSSVVAAVLIFALIFSLFSPGTKAAAAGAIDQAAALENG
                     KEQTGAMKEPEQVKWYKVTPGATDIQKNSHMALTVKSDSVLNVSVYPSKEKALKDETF
                     EMYRSFTAEDGKSEVIFPYAWSGPYYVKVEYLGEEEPEDGGTAEAAAEAKYTIGYKGT
                     KKQPSDLEEEEACPVEMSVDQKKSGKGILDKLRSIRDEQLSQTAEGKELTSLYYKAAP
                     FIVAKLALNKTARNEIYQDLVTLKPLFDDVSENGASSSYKVTEKDQKAINRLYDKALQ
                     SVPSFLKEEIKKQADRLNMKQLQGKTAGAILTENNIAAKSEVQTTKVIFKVKDNKSLS
                     SVHNEMKGFSASAQSKKDISNVKKAKKLFDNLYSFELPKDEKQNGAYTASAKRVKSAA
                     ATLSKMSNVEFAEPVQEYKSLANDIQYPYQWPLKNNGENGGVKNADVKYEPANTLLSK
                     RKLNDTLIAVVDTGVDSTLADLKGKVRTDLGHNFVGRNNNAMDDQGHGTHVAGIIAAQ
                     SDNGYSMTGLNAKAKIIPVKVLDSAGSGDTEQIALGIKYAADKGAKVINLSLGGGYSR
                     VLEFALKYAADKNVLIAAASGNDGENALSYPASSKYVMSVGATNRMDMTADFSNYGKG
                     LDISAPGSDIPSLVPNGNVTYMSGTSMATPYAAAAAGLLFAQNPKLKRTEVEDMLKKT
                     ADDISFESVDGGEEELYDDYGDPIEIPKTPGVDWHSGYGRLNVMKAVSAADLQLKVNK
                     LESTQTAVRGSAKEGTLIEVMNGKKKLGSAKAGKDNAFKVNIATQKQDQVLYLKATKG
                     DAKTSYKVVVVKGKPSGTPKVNAVKTKDTAVKGKANSKAMIRVKNKSKKVIASAKADA
                     KGTFSVKIKKQKAGTVLYVTAVDTDKKESKEAKVVVEK*"
     gene            1135757..1138441
                     /gene="wprA"
                     /locus_tag="BSU_10770"
                     /old_locus_tag="BSU10770"
     downshifts      complement(1135925)
                     /Source="Nicolas_upshifts"
                     /id="D585"
                     /incds=1
                     /nref=2
                     /ntot=155
                     /MaxReadThrough="0.14981"
                     /MaxDrop="3.98572"
                     /score="9.01750245"
                     /energy="-8"
                     /TU="NA"
                     /idTUdmin="U869"
                     /TUdmin=2563
                     /isTUend="FALSE"
     downshifts      1138433
                     /Source="Nicolas_upshifts"
                     /id="D586"
                     /incds=0
                     /nref=239
                     /ntot=267
                     /MaxReadThrough="1.55031"
                     /MaxDrop="8.31576"
                     /score="36.3638154"
                     /energy="-12.3"
                     /TU="NA"
                     /idTUdmin="U868"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(1138472..1139059)
                     /gene="yisN"
                     /locus_tag="BSU_10780"
                     /old_locus_tag="BSU10780"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388959.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10780"
                     /db_xref="EnsemblGenomes-Tr:CAB12918"
                     /db_xref="InterPro:IPR024488"
                     /db_xref="SubtiList:BG12239"
                     /db_xref="UniProtKB/Swiss-Prot:O06727"
                     /translation="MKKKETAWMKRKQLLYTEERKWEYGTILIEDGICLIENGEGDIL
                     LADSLQHSPIWIHHKGKWEQAGFQDKLVLACGAENISLSGGERIRYEKSVKRPLMALL
                     DSLDDETFLAFLQHLHSFGLSVFDCVFSYNKGVFSNTSAGQGVSFYHFSNDTAQCAMQ
                     HHYNYSSEGTGDRFEWTASNGKRSIMYTAVQRGRK*"
     gene            complement(1138472..1139059)
                     /gene="yisN"
                     /locus_tag="BSU_10780"
                     /old_locus_tag="BSU10780"
     promotor_-10    complement(1139074..1139093)
                     /Source="Nicolas_upshift_promotors"
                     /id="U869"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.561438561438561"
                     /psig="0.561438561438561"
                     /xcortree=1023
                     /SigmaFactorBS="caccttagtaagtttatgcatctataggcagatagttgattt
                     GTCcataaaagagttgtaTGGGACAGGCTTGAATTGGAaagaaaagagaggaatgaag
                     a"
                     /listShort="yisN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1139093)
                     /Source="Nicolas_upshifts"
                     /id="U869"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.561438561438561"
                     /psig="0.561438561438561"
                     /xcortree=1023
                     /SigmaFactorBS="caccttagtaagtttatgcatctataggcagatagttgattt
                     GTCcataaaagagttgtaTGGGACAGGCTTGAATTGGAaagaaaagagaggaatgaag
                     a"
                     /listShort="yisN"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1139109..1139111)
                     /Source="Nicolas_upshift_promotors"
                     /id="U869"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.561438561438561"
                     /psig="0.561438561438561"
                     /xcortree=1023
                     /SigmaFactorBS="caccttagtaagtttatgcatctataggcagatagttgattt
                     GTCcataaaagagttgtaTGGGACAGGCTTGAATTGGAaagaaaagagaggaatgaag
                     a"
                     /listShort="yisN"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1139114..1139120
                     /Source="Nicolas_upshift_promotors"
                     /id="U870"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.543456543456543"
                     /psig="0.543456543456543"
                     /xcortree=1061
                     /SigmaFactorBS="tttccaattcaagcctgtcccatacaactcttttatggacaa
                     ATCAACTatctgcctatagatGCATAAACTTACTAAGGTGctgaaagaaacgaaattg
                     t"
                     /listShort="S387, asnO, S388"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1139132
                     /Source="Nicolas_upshifts"
                     /id="U870"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.543456543456543"
                     /psig="0.543456543456543"
                     /xcortree=1061
                     /SigmaFactorBS="tttccaattcaagcctgtcccatacaactcttttatggacaa
                     ATCAACTatctgcctatagatGCATAAACTTACTAAGGTGctgaaagaaacgaaattg
                     t"
                     /listShort="S387, asnO, S388"
                     /GFF_Attribute="listLong"
     promotor_-10    1139135..1139153
                     /Source="Nicolas_upshift_promotors"
                     /id="U870"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.543456543456543"
                     /psig="0.543456543456543"
                     /xcortree=1061
                     /SigmaFactorBS="tttccaattcaagcctgtcccatacaactcttttatggacaa
                     ATCAACTatctgcctatagatGCATAAACTTACTAAGGTGctgaaagaaacgaaattg
                     t"
                     /listShort="S387, asnO, S388"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1139138..1139204
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1157170_1157236"
                     /HighExp="S6, S5, S7, S8, B36, S4, BT, G/S, B60, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.543"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S387"
     CDS             1139205..1141049
                     /gene="asnO"
                     /locus_tag="BSU_10790"
                     /old_locus_tag="BSU10790"
                     /EC_number="6.3.5.4"
                     /function="16.5: Explore"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10498721, 26735940"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10498721, 26735940;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthetase (sporulation related)"
                     /protein_id="NP_388960.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10790"
                     /db_xref="EnsemblGenomes-Tr:CAB12919"
                     /db_xref="GOA:O05272"
                     /db_xref="InterPro:IPR001962"
                     /db_xref="InterPro:IPR006426"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR017932"
                     /db_xref="InterPro:IPR029055"
                     /db_xref="InterPro:IPR033738"
                     /db_xref="SubtiList:BG12240"
                     /db_xref="UniProtKB/Swiss-Prot:O05272"
                     /translation="MCGITGWVDFKKQLVQEKQTMDRMTDTLSKRGPDDSNVWGEHHV
                     LFGHKRLAVVDIEGGRQPMACTYKGDTYTIIYNGELYNTEDLRKELRARGHQFERTSD
                     TEVLLHSYIEWQEDCVDHLNGIFAFAVWDEKRNLLFAARDRLGVKPFFYTKEGSSFLF
                     GSEIKAILAHPDIKARVDRTGLSEIFGLGPSRTPGTGIFKGIKEIRPAHALTFSKDGL
                     NIWRYWNVESEKHTDSFDDTVANVRSLFQDAVTRQLVSDVPVCTFLSGGLDSSAITAI
                     AAGHFEKEGKAPLHTYSIDYEENDKYFQASAFQPNDDGPWIEKMTEAFGTTHHKCVIS
                     QKDLVDHLEEAVLVKDLPGMADVDSSLLWFCREIKKDFVVSLSGECADEIFGGYPWFH
                     TADVESGFPWMRSTEERIKLLSDSWQKKLNLKEYVNAKYEETLAETPLLDGETGVDKA
                     RRQLFYLNMLWFMTNLLDRKDRMSMGASLEVRVPFADHRLVEYVWNIPWEMKMHDNRE
                     KGILRKALEGILPDDILYRKKSPYPKTHHPEYTKGVSEWLKTIRSQKDSVLHTLLDRK
                     QLDQLLETEGSSFKVPWFGQLMKGPQLIAHLAQIHTWFEAYRIDIDER*"
     gene            1139205..1141049
                     /gene="asnO"
                     /locus_tag="BSU_10790"
                     /old_locus_tag="BSU10790"
     S_feature       1141050..1141117
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1159082_1159149"
                     /HighExp="S6, S5, S7, B36, BT, S8, S4, B60, S3, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.543"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S388"
     downshifts      1141074
                     /Source="Nicolas_upshifts"
                     /id="D587"
                     /incds=0
                     /nref=12
                     /ntot=43
                     /MaxReadThrough="3.29969"
                     /MaxDrop="4.67478"
                     /score="3.55879494"
                     /energy="-14.8"
                     /TU="U870"
                     /idTUdmin="U870"
                     /TUdmin="-550"
                     /isTUend="FALSE"
     CDS             complement(1141179..1141658)
                     /gene="yizA"
                     /locus_tag="BSU_10800"
                     /old_locus_tag="BSU10800"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein (sporulation
                     related)"
                     /protein_id="YP_054576.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10800"
                     /db_xref="EnsemblGenomes-Tr:CAE01451"
                     /db_xref="GOA:Q7WY73"
                     /db_xref="InterPro:IPR007837"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="PDB:2QE9"
                     /db_xref="SubtiList:BG14187"
                     /db_xref="UniProtKB/Swiss-Prot:Q7WY73"
                     /translation="MMKFFEYNWQVRDQWFTWCHQLTTEELLKNRLGGVENILYTLFH
                     IIDVEYSWIRAIQGKEDIAVQFADYQTLNKVKSLSNTFRTEIIDVLQTHSDQIKDELV
                     SVPWETGVLYTRDEILHHIIAHEIHHIGQLSVWARELKLSPVSASFIGRTLKPIHSY*
                     "
     gene            complement(1141179..1141658)
                     /gene="yizA"
                     /locus_tag="BSU_10800"
                     /old_locus_tag="BSU10800"
     upshifts        complement(1141678)
                     /Source="Nicolas_upshifts"
                     /id="U871"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.701298701298701"
                     /psig="0.701298701298701"
                     /xcortree=530
                     /SigmaFactorBS="caatcatcacttcattaatAGAGGAATCacggaaaaaaGGGC
                     TAATTGTTATGATACatgatagtattggagtgagtttagtgatgaaattttttgaata
                     t"
                     /listShort="yizA"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1141682..1141700)
                     /Source="Nicolas_upshift_promotors"
                     /id="U871"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.701298701298701"
                     /psig="0.701298701298701"
                     /xcortree=530
                     /SigmaFactorBS="caatcatcacttcattaatAGAGGAATCacggaaaaaaGGGC
                     TAATTGTTATGATACatgatagtattggagtgagtttagtgatgaaattttttgaata
                     t"
                     /listShort="yizA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(1141711..1141719)
                     /Source="Nicolas_upshift_promotors"
                     /id="U871"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.701298701298701"
                     /psig="0.701298701298701"
                     /xcortree=530
                     /SigmaFactorBS="caatcatcacttcattaatAGAGGAATCacggaaaaaaGGGC
                     TAATTGTTATGATACatgatagtattggagtgagtttagtgatgaaattttttgaata
                     t"
                     /listShort="yizA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1141850..1141854
                     /Source="Nicolas_upshift_promotors"
                     /id="U872"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.338661338661339"
                     /psig="0.988011988011988"
                     /xcortree=2373
                     /SigmaFactorBS="tgcgtcttgttacttttacaaagtaagaatcggcattttctt
                     cATATAcaattaggaaaaaaCATACTAGACTTGAAGAAGCagtgatacataggagtga
                     g"
                     /listShort="yisP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1141867
                     /Source="Nicolas_upshifts"
                     /id="U872"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.338661338661339"
                     /psig="0.988011988011988"
                     /xcortree=2373
                     /SigmaFactorBS="tgcgtcttgttacttttacaaagtaagaatcggcattttctt
                     cATATAcaattaggaaaaaaCATACTAGACTTGAAGAAGCagtgatacataggagtga
                     g"
                     /listShort="yisP"
                     /GFF_Attribute="listLong"
     promotor_-10    1141869..1141888
                     /Source="Nicolas_upshift_promotors"
                     /id="U872"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.338661338661339"
                     /psig="0.988011988011988"
                     /xcortree=2373
                     /SigmaFactorBS="tgcgtcttgttacttttacaaagtaagaatcggcattttctt
                     cATATAcaattaggaaaaaaCATACTAGACTTGAAGAAGCagtgatacataggagtga
                     g"
                     /listShort="yisP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1141890..1142714
                     /gene="farP"
                     /locus_tag="BSU_10810"
                     /old_locus_tag="BSU10810"
                     /EC_number="3.6.1.27"
                     /experiment="publication(s) with functional evidences,
                     PMID:23295493, 25308276"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 23295493, 25308276;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate phosphatase"
                     /protein_id="NP_388961.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10810"
                     /db_xref="EnsemblGenomes-Tr:CAB12920"
                     /db_xref="GOA:O06728"
                     /db_xref="InterPro:IPR002060"
                     /db_xref="InterPro:IPR008949"
                     /db_xref="PDB:3WE9"
                     /db_xref="SubtiList:BG12241"
                     /db_xref="UniProtKB/Swiss-Prot:O06728"
                     /translation="MIHRSEKMKEIKEAYQQCGQIVGEYAPACFKALSYLPLKQRQAS
                     WAVLSFCHTAASADEKVLPAFEAKADHVYQRTNNGKQHLWKAFDHAYRTFTLESEPFR
                     EFIAAQKEDAKPYDDLDELLMYAYRTGGAAGLMLLPILTRRKQDQLKQAAVSLGLAIQ
                     LVRFLSDLGTDQQKNRIPRQVMQQFGYTEADLQKGTVNKAFTMTWEYIAFEAEAYLEE
                     CQDALPLFPQYSQKTVKAALHLHRAVLEKIRAKQHDVFQYHFALTETEVKQILSDI*"
     gene            1141890..1142714
                     /gene="farP"
                     /locus_tag="BSU_10810"
                     /old_locus_tag="BSU10810"
     promotor_-35    1142102..1142108
                     /Source="Nicolas_upshift_promotors"
                     /id="U873"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=261
                     /SigmaFactorBS="gtattgcccgcatttgaagctaaagctgatcaTGTTTACcaa
                     aggacaaataaCGGTAAACAACATCTATGGaaggcttttgatcatgcgtatcggacct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1142123..1142141
                     /Source="Nicolas_upshift_promotors"
                     /id="U873"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=261
                     /SigmaFactorBS="gtattgcccgcatttgaagctaaagctgatcaTGTTTACcaa
                     aggacaaataaCGGTAAACAACATCTATGGaaggcttttgatcatgcgtatcggacct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1142130
                     /Source="Nicolas_upshifts"
                     /id="U873"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=261
                     /SigmaFactorBS="gtattgcccgcatttgaagctaaagctgatcaTGTTTACcaa
                     aggacaaataaCGGTAAACAACATCTATGGaaggcttttgatcatgcgtatcggacct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     S_feature       1142724..1144174
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1160756_1162206"
                     /HighExp="Salt, Etha, Sw, Cold, G150, G180, G135, LBGtran,
                     Heat, Paraq"
                     /AntisenseName="yisQ"
                     /AntisenseCor="0.19511630802652"
                     /AntisenseRegPval="-2.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S389"
     CDS             complement(1142744..1144111)
                     /gene="yisQ"
                     /locus_tag="BSU_10820"
                     /old_locus_tag="BSU10820"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     17114254; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Na(+)-driven efflux transporter"
                     /protein_id="NP_388962.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10820"
                     /db_xref="EnsemblGenomes-Tr:CAB12921"
                     /db_xref="GOA:O07940"
                     /db_xref="InterPro:IPR002528"
                     /db_xref="SubtiList:BG12242"
                     /db_xref="UniProtKB/Swiss-Prot:O07940"
                     /translation="MKQAVFKSTALKKPADKTFSLFSLTWPIFIEVSLYMFMGNADTL
                     MLSQYSDNSVAAVGVSNQILNLIIVMFSFIATGTTVIISQFLGSRQKKEAMEVAYVSI
                     GANFFISLAISAVVFFAAVPLLHMMGLSDALMPDAKVFLQVVGGLSFIQALIMTFSAI
                     LKSYGYTKDTMFVTIGMNILNIAGNFVVIFGLFGFPVLGVAGVAMSTSIARVIGLIAM
                     IVIVNKRIQLKMSLKKVFHMHKEHLRKLLKIGIPSAGEQLSYNLSQMIVTYFIAIMGA
                     QALTTKVYTQNITMFILLFGTAISQGTQILIGRYIGGKQFDAAYERCMKSLYWALGIA
                     AATSVLMTIFSKDLIGLFTQSPDIIATASLLIAMTIILEPGRSFNVIIINSLRAAGDA
                     KFPVYMAMISMWGIGLPLAYLFGIHLGFGLAGIWISFIADEWVRGILMYRRWRSRIWI
                     QKGMA*"
     gene            complement(1142744..1144111)
                     /gene="yisQ"
                     /locus_tag="BSU_10820"
                     /old_locus_tag="BSU10820"
     promotor_-35    1144143..1144150
                     /Source="Nicolas_upshift_promotors"
                     /id="U874"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.663336663336663"
                     /psig="0.993006993006993"
                     /xcortree=2737
                     /SigmaFactorBS="tctaacccctttcgtaaataaaatcaaCGTTTTAAagtgtac
                     ctccatTTCCTTATAATAAAAAGGGAtagaaacgatacttcttgtaaaaatccgactt
                     a"
                     /listShort="yisR, degA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1144164..1144183
                     /Source="Nicolas_upshift_promotors"
                     /id="U874"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.663336663336663"
                     /psig="0.993006993006993"
                     /xcortree=2737
                     /SigmaFactorBS="tctaacccctttcgtaaataaaatcaaCGTTTTAAagtgtac
                     ctccatTTCCTTATAATAAAAAGGGAtagaaacgatacttcttgtaaaaatccgactt
                     a"
                     /listShort="yisR, degA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1144176
                     /Source="Nicolas_upshifts"
                     /id="U874"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.663336663336663"
                     /psig="0.993006993006993"
                     /xcortree=2737
                     /SigmaFactorBS="tctaacccctttcgtaaataaaatcaaCGTTTTAAagtgtac
                     ctccatTTCCTTATAATAAAAAGGGAtagaaacgatacttcttgtaaaaatccgactt
                     a"
                     /listShort="yisR, degA"
                     /GFF_Attribute="listLong"
     CDS             1144235..1145098
                     /gene="yisR"
                     /locus_tag="BSU_10830"
                     /old_locus_tag="BSU10830"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10704478; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (AraC/XylS
                     family)"
                     /protein_id="NP_388963.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10830"
                     /db_xref="EnsemblGenomes-Tr:CAB12922"
                     /db_xref="GOA:P40331"
                     /db_xref="InterPro:IPR003313"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR018060"
                     /db_xref="InterPro:IPR018062"
                     /db_xref="SubtiList:BG11064"
                     /db_xref="UniProtKB/Swiss-Prot:P40331"
                     /translation="MPRILFTVPPFPVFIAAGEGVFKKGETHVKRVFSVFDLIYVKQG
                     TLYITENETSFSVEGGEYILLSPGLEHYGTKGSDEATSYYWLHFDEHRYEFTAKGGSN
                     WSELQQEKGSFEELARYGLALPRKGKVQRPQFMAQQFEKLIDYSAENSDLPLRKQILF
                     EELMLHLQKEAFQIPSAKERVAWEAARYLQEHYKEKTTIKDLSLALHYHQDYVSRCMQ
                     QVLGVTPAQYTNRVRMTEAKRLLSSTNDKMGVIAETVGMEDPTYFSKLFKQIEGISPI
                     EYRKIVSRKVQ*"
     gene            1144235..1145098
                     /gene="yisR"
                     /locus_tag="BSU_10830"
                     /old_locus_tag="BSU10830"
     CDS             1145116..1146129
                     /gene="iolQ"
                     /locus_tag="BSU_10840"
                     /old_locus_tag="BSU10840"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8407808, 23504016, 28693424"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8407808, 23504016,
                     28693424; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor of iolX (LacI family)"
                     /protein_id="NP_388964.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10840"
                     /db_xref="EnsemblGenomes-Tr:CAB12923"
                     /db_xref="GOA:P37947"
                     /db_xref="InterPro:IPR000843"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="InterPro:IPR028082"
                     /db_xref="SubtiList:BG10847"
                     /db_xref="UniProtKB/Swiss-Prot:P37947"
                     /translation="MKTTIYDVAKAAGVSITTVSRVINNTGRISDKTRQKVMNVMNEM
                     AYTPNVHAAALTGKRTNMIALVAPDISNPFYGELAKSIEERADELGFQMLICSTDYDP
                     KKETKYFSVLKQKKVDGIIFATGIESHDSMSALEEIASEQIPIAMISQDKPLLPMDIV
                     VIDDVRGGYEAAKHLLSLGHTNIACIIGDGSTTGEKNRIKGFRQAMEEAGVPIDESLI
                     IQTRFSLESGKEEAGKLLDRNAPTAIFAFNDVLACAAIQAARIRGIKVPDDLSIIGFD
                     NTILAEMAAPPLTTVAQPIKEMGRSVIELLAEAIEGKRKAKQKIVLPPELVVRHSTSP
                     LNT*"
     gene            1145116..1146129
                     /gene="iolQ"
                     /locus_tag="BSU_10840"
                     /old_locus_tag="BSU10840"
     downshifts      1146112
                     /Source="Nicolas_upshifts"
                     /id="D588"
                     /incds=0
                     /nref=13
                     /ntot=204
                     /MaxReadThrough="0.51227"
                     /MaxDrop="3.29173"
                     /score="25.1260914"
                     /energy="-9.6"
                     /TU="NA"
                     /idTUdmin="U874"
                     /TUdmin=22
                     /isTUend="TRUE"
     promotor_-35    1146181..1146188
                     /Source="Nicolas_upshift_promotors"
                     /id="U875"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.91008991008991"
                     /psig="0.988011988011988"
                     /xcortree=334
                     /SigmaFactorBS="agttgaagccaaaaaaacaTATTGCGTgtaaaccaaaggcgG
                     TGTAAAATATAACCATCTTttgagaaagcgcttgcgcaaaatggcagagcggatagaa
                     c"
                     /listShort="S390, yisS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1146203..1146222
                     /Source="Nicolas_upshift_promotors"
                     /id="U875"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.91008991008991"
                     /psig="0.988011988011988"
                     /xcortree=334
                     /SigmaFactorBS="agttgaagccaaaaaaacaTATTGCGTgtaaaccaaaggcgG
                     TGTAAAATATAACCATCTTttgagaaagcgcttgcgcaaaatggcagagcggatagaa
                     c"
                     /listShort="S390, yisS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1146222..1146337
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1164254_1164369"
                     /HighExp="Lbstat, M40t90, M0t90, BI, G150, dia0, Mt0,
                     Lbexp, Lbtran, dia5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.988"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S390"
     upshifts        1146222
                     /Source="Nicolas_upshifts"
                     /id="U875"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.91008991008991"
                     /psig="0.988011988011988"
                     /xcortree=334
                     /SigmaFactorBS="agttgaagccaaaaaaacaTATTGCGTgtaaaccaaaggcgG
                     TGTAAAATATAACCATCTTttgagaaagcgcttgcgcaaaatggcagagcggatagaa
                     c"
                     /listShort="S390, yisS"
                     /GFF_Attribute="listLong"
     CDS             1146338..1147366
                     /gene="iolX"
                     /locus_tag="BSU_10850"
                     /old_locus_tag="BSU10850"
                     /EC_number="1.1.1.370"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11160890, 20133360, 23109554, 23504016, 28693424"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11160890, 20133360,
                     23109554, 23504016, 28693424; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="scyllo-inositol 2-dehydrogenase (NAD(+))"
                     /protein_id="NP_388965.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10850"
                     /db_xref="EnsemblGenomes-Tr:CAB12924"
                     /db_xref="GOA:P40332"
                     /db_xref="InterPro:IPR000683"
                     /db_xref="InterPro:IPR004104"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG11065"
                     /db_xref="UniProtKB/Swiss-Prot:P40332"
                     /translation="MEHQVRCAVLGLGRLGYYHAKNLVTSVPGAKLVCVGDPLKGRAE
                     QVARELGIEKWSEDPYEVLEDPGIDAVIIVTPTSTHGDMIIKAAENGKQIFVEKPLTL
                     SLEESKAASEKVKETGVICQVGFMRRFDPAYADAKRRIDAGEIGKPIYYKGFTRDQGA
                     PPAEFIKHSGGIFIDCSIHDYDIARYLLGAEITSVSGHGRILNNPFMEQYGDVDQALT
                     YIEFDSGAAGDVEASRTSPYGHDIRAEVIGTEGSIFIGTLRHQHVTILSAKGSSFDII
                     PDFQTRFHEAYCLELQHFAECVRNGKTPIVTDIDATINLEVGIAATNSFRNGMPVQLD
                     VKRAYTGM*"
     gene            1146338..1147366
                     /gene="iolX"
                     /locus_tag="BSU_10850"
                     /old_locus_tag="BSU10850"
     downshifts      1147388
                     /Source="Nicolas_upshifts"
                     /id="D589"
                     /incds=0
                     /nref=4
                     /ntot=37
                     /MaxReadThrough="0.33001"
                     /MaxDrop="3.45406"
                     /score="8.69111487"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U875"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1147417..1147926)
                     /gene="yisT"
                     /locus_tag="BSU_10860"
                     /old_locus_tag="BSU10860"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 25651892; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme regulator of activity"
                     /protein_id="NP_388966.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10860"
                     /db_xref="EnsemblGenomes-Tr:CAB12925"
                     /db_xref="GOA:O07939"
                     /db_xref="InterPro:IPR007837"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="SubtiList:BG12243"
                     /db_xref="UniProtKB/Swiss-Prot:O07939"
                     /translation="MTDAKQFYDYHSWANKKIFTHIENLPEETAYQEVKSVFPSVSDV
                     LLHMCRADYIWLNVLSGVAYQEIIDSAGKLQSAQGNMAAIKQHAAELESQYHDFFSRQ
                     TDLEQTFTMQHPKLGTLESTYADTILHVVNHGTYHRGNVTAMLRQLDHSGVPTDYMYY
                     LYEKRESKG*"
     gene            complement(1147417..1147926)
                     /gene="yisT"
                     /locus_tag="BSU_10860"
                     /old_locus_tag="BSU10860"
     downshifts      complement(1147436)
                     /Source="Nicolas_upshifts"
                     /id="D590"
                     /incds=0
                     /nref=81
                     /ntot=251
                     /MaxReadThrough="-0.0416600000000003"
                     /MaxDrop="7.15629"
                     /score="27.2292301"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U876"
                     /TUdmin="-16"
                     /isTUend="TRUE"
     promotor_-10    complement(1147939..1147957)
                     /Source="Nicolas_upshift_promotors"
                     /id="U876"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=520
                     /SigmaFactorBS="agcggcaggatattttggggtgtcactcttttgcaattGAAG
                     GAGAAacagatgaaaaAAACGAATTTCTTAGAAAAgggggcatgctgatgactgatgc
                     a"
                     /listShort="yisT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1147955)
                     /Source="Nicolas_upshifts"
                     /id="U876"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=520
                     /SigmaFactorBS="agcggcaggatattttggggtgtcactcttttgcaattGAAG
                     GAGAAacagatgaaaaAAACGAATTTCTTAGAAAAgggggcatgctgatgactgatgc
                     a"
                     /listShort="yisT"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1147969..1147977)
                     /Source="Nicolas_upshift_promotors"
                     /id="U876"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=520
                     /SigmaFactorBS="agcggcaggatattttggggtgtcactcttttgcaattGAAG
                     GAGAAacagatgaaaaAAACGAATTTCTTAGAAAAgggggcatgctgatgactgatgc
                     a"
                     /listShort="yisT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1147976..1148638)
                     /gene="yisU"
                     /locus_tag="BSU_10870"
                     /old_locus_tag="BSU10870"
                     /function="16.1: Circulate"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminoacid related metabolite efflux
                     transporter"
                     /protein_id="NP_388967.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10870"
                     /db_xref="EnsemblGenomes-Tr:CAB12926"
                     /db_xref="GOA:O06730"
                     /db_xref="InterPro:IPR001123"
                     /db_xref="SubtiList:BG13100"
                     /db_xref="UniProtKB/Swiss-Prot:O06730"
                     /translation="MTISLMIEKKCERSFFSMNAIIHGIVLAFGLILPLGVQNVFIFQ
                     QGALQKHIWRALPAVISASVCDTLLIVLAVAGVSVIVQELPVFETVMMAGGFLFLLYM
                     GWVTWNIRPNTSQNEKHTFTPKKQAAFAAAVSLLNPHAILDTIGVIGTSSLQYSGLEK
                     WLFMAACIAVSWIWFISLAIAGRLFQTIDTSGRLMLIVNKCSAAVMWAAAGYFGVSLF
                     CN*"
     gene            complement(1147976..1148638)
                     /gene="yisU"
                     /locus_tag="BSU_10870"
                     /old_locus_tag="BSU10870"
     promotor_-35    1148657..1148663
                     /Source="Nicolas_upshift_promotors"
                     /id="U877"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig=1
                     /xcortree=3135
                     /SigmaFactorBS="gagagattgtcactaaagtctccagccatttGGTTGGGttag
                     gaaccagccAAATGTATAATGTGTAAAAAaggggggcatgaccttgtcgcaatggcag
                     c"
                     /listShort="yisV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1148677..1148696
                     /Source="Nicolas_upshift_promotors"
                     /id="U877"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig=1
                     /xcortree=3135
                     /SigmaFactorBS="gagagattgtcactaaagtctccagccatttGGTTGGGttag
                     gaaccagccAAATGTATAATGTGTAAAAAaggggggcatgaccttgtcgcaatggcag
                     c"
                     /listShort="yisV"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1148686
                     /Source="Nicolas_upshifts"
                     /id="U877"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.5004995004995"
                     /psig=1
                     /xcortree=3135
                     /SigmaFactorBS="gagagattgtcactaaagtctccagccatttGGTTGGGttag
                     gaaccagccAAATGTATAATGTGTAAAAAaggggggcatgaccttgtcgcaatggcag
                     c"
                     /listShort="yisV"
                     /GFF_Attribute="listLong"
     CDS             1148705..1150159
                     /gene="yisV"
                     /locus_tag="BSU_10880"
                     /old_locus_tag="BSU10880"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15223311, 19383706;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PLP-dependent transcriptional
                     regulator"
                     /protein_id="NP_388968.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10880"
                     /db_xref="EnsemblGenomes-Tr:CAB12927"
                     /db_xref="GOA:Q796Q6"
                     /db_xref="InterPro:IPR000524"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13101"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Q6"
                     /translation="MTLSQWQPSRKSDVPLHRQIEQYMKDKILHGEWAVGTKIPSQRT
                     LADMFQVNRSTVTAAIDELTSQGLLEGRKGGGTKVVNSTWSVLTAEPPLDWSDYVRSG
                     IHRANSSIIQAINQNEPRADIIRLGTGELSPDLVPADTIGRMFQQINPGVLSLGYEQP
                     KGNRQLREAVADHLKGKKIHVSPSAILIVSGALQALQLISIGLLKRDSVILTEKPSYL
                     QSLHVFQSAGMRLRGLPMDDEGVKAGLVSSNRKQYGGQLLYTIPSFHNPTGTVMSEQR
                     RKEIISLSKKEQMPIIEDDAYGDLWFEEKPPQPLKAMDHEGNILYLGAFSKTVSPGLR
                     IGWLAGPEPVIERLADIKMQTDYGSSGLSQWAAAEWLSQGYYEEHLTWVRRKLKERRD
                     AAVHFLERYAGDIATWRIPAGGFYIWVTFHKNLPVSRFFYELLKRQVLVNPGYIYDGE
                     DRNSIRLSYSYASLGDLETGIKAAAETARRLMMS*"
     gene            1148705..1150159
                     /gene="yisV"
                     /locus_tag="BSU_10880"
                     /old_locus_tag="BSU10880"
     S_feature       complement(1150014..1150166)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1168046_1168198_c"
                     /HighExp="Diami, Sw, C90, LBGstat, dia15, Paraq, dia5, BC,
                     M40t45, Oxctl"
                     /AntisenseName="yisV"
                     /AntisenseCor="0.69858995161852"
                     /AntisenseRegPval="-40"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S391"
     downshifts      complement(1150049)
                     /Source="Nicolas_upshifts"
                     /id="D591"
                     /incds=1
                     /nref=2
                     /ntot=84
                     /MaxReadThrough="2.36735"
                     /MaxDrop="2.81041"
                     /score="-5.131548"
                     /energy="-17.3"
                     /TU="NA"
                     /idTUdmin="U879"
                     /TUdmin="-11"
                     /isTUend="TRUE"
     CDS             complement(1150167..1150805)
                     /gene="yisX"
                     /locus_tag="BSU_10890"
                     /old_locus_tag="BSU10890"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388970.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10890"
                     /db_xref="EnsemblGenomes-Tr:CAB12929"
                     /db_xref="InterPro:IPR001646"
                     /db_xref="SubtiList:BG13103"
                     /db_xref="UniProtKB/Swiss-Prot:O06733"
                     /translation="MNKIAIQKPNIPENLQTADFHDAVTQDDVISMHLFEDCTICGED
                     IERLCVEKTVFRNVVFIDVSFRHIELTDVIFEKCDLSNADFSGAVIHRTSVKQSKMVG
                     MNVAEATLRNVSFEECHGHFSSFSYSNMKQVRFDHCALMQSECSDTVLQQTHFDGCEL
                     EGASFTGTSLQNMDISTCRFEQLHVSLDKLKGCKIAPEHAIAFARALGAVIV*"
     gene            complement(1150167..1150805)
                     /gene="yisX"
                     /locus_tag="BSU_10890"
                     /old_locus_tag="BSU10890"
     S_feature       complement(1150806..1150940)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1168838_1168972_c"
                     /HighExp="Diami, dia15, dia5, C90, BC, Paraq, LBGstat,
                     Lbtran, HiOs, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.995"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S392"
     promotor_-35    1150854..1150859
                     /Source="Nicolas_upshift_promotors"
                     /id="U878"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1110
                     /SigmaFactorBS="cctttgctgcccgaaaaacagaggcttccgggttcaatTTAA
                     TAgatcgttaaggaaatTGATACATATAGTAAATCGtgaagagccttttcttggtaca
                     g"
                     /listShort="S393, yisY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1150875..1150893
                     /Source="Nicolas_upshift_promotors"
                     /id="U878"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1110
                     /SigmaFactorBS="cctttgctgcccgaaaaacagaggcttccgggttcaatTTAA
                     TAgatcgttaaggaaatTGATACATATAGTAAATCGtgaagagccttttcttggtaca
                     g"
                     /listShort="S393, yisY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1150876
                     /Source="Nicolas_upshifts"
                     /id="U878"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1110
                     /SigmaFactorBS="cctttgctgcccgaaaaacagaggcttccgggttcaatTTAA
                     TAgatcgttaaggaaatTGATACATATAGTAAATCGtgaagagccttttcttggtaca
                     g"
                     /listShort="S393, yisY"
                     /GFF_Attribute="listLong"
     S_feature       1150886..1151010
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1168918_1169042"
                     /HighExp="S6, S5, S8, S7, S4, BT, B36, S3, G/S, LoTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S393"
     promotor_-10    complement(1150926..1150945)
                     /Source="Nicolas_upshift_promotors"
                     /id="U879"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.995004995004995"
                     /xcortree=2078
                     /SigmaFactorBS="tcctgttccctttggctttttcggcctgtaaacGCCTTGACg
                     tataggaagctttCCATTTATGCTTACAAAACAagcgggctgctgtaccaagaaaagg
                     c"
                     /listShort="S392, yisX, S391"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1150940)
                     /Source="Nicolas_upshifts"
                     /id="U879"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.995004995004995"
                     /xcortree=2078
                     /SigmaFactorBS="tcctgttccctttggctttttcggcctgtaaacGCCTTGACg
                     tataggaagctttCCATTTATGCTTACAAAACAagcgggctgctgtaccaagaaaagg
                     c"
                     /listShort="S392, yisX, S391"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1150960..1150967)
                     /Source="Nicolas_upshift_promotors"
                     /id="U879"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.974025974025974"
                     /psig="0.995004995004995"
                     /xcortree=2078
                     /SigmaFactorBS="tcctgttccctttggctttttcggcctgtaaacGCCTTGACg
                     tataggaagctttCCATTTATGCTTACAAAACAagcgggctgctgtaccaagaaaagg
                     c"
                     /listShort="S392, yisX, S391"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1151011..1151817
                     /gene="yisY"
                     /locus_tag="BSU_10900"
                     /old_locus_tag="BSU10900"
                     /EC_number="3.1.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 22882546, 22720735;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl hydrolase or peroxidase"
                     /protein_id="NP_388971.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10900"
                     /db_xref="EnsemblGenomes-Tr:CAB12930"
                     /db_xref="GOA:O06734"
                     /db_xref="InterPro:IPR000073"
                     /db_xref="InterPro:IPR000639"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG13104"
                     /db_xref="UniProtKB/Swiss-Prot:O06734"
                     /translation="MGHYIKTEEHVTLFVEDIGHGRPIIFLHGWPLNHKMFEYQMNEL
                     PKRGFRFIGVDLRGYGQSDRPWEGYDYDTMADDVKAVIYTLQLENAILAGFSMGGAIA
                     IRYMARHEGADVDKLILLSAAAPAFTKRPGYPYGMRKQDIDDMIELFKADRPKTLADL
                     GKQFFEKKVSPELRQWFLNLMLEASSYGTIHSGIALRDEDLRKELAAIKVPTLILHGR
                     KDRIAPFDFAKELKRGIKQSELVPFANSGHGAFYEEKEKINSLIAQFSNS*"
     gene            1151011..1151817
                     /gene="yisY"
                     /locus_tag="BSU_10900"
                     /old_locus_tag="BSU10900"
     downshifts      1151810
                     /Source="Nicolas_upshifts"
                     /id="D592"
                     /incds=0
                     /nref=4
                     /ntot=24
                     /MaxReadThrough="2.64682"
                     /MaxDrop="5.60718"
                     /score="8.70914085"
                     /energy="-6.5"
                     /TU="NA"
                     /idTUdmin="U878"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1151845..1152444)
                     /gene="yisZ"
                     /locus_tag="BSU_10910"
                     /old_locus_tag="BSU10910"
                     /EC_number="2.7.1.25"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15383836; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenylylsulfate kinase"
                     /protein_id="NP_388972.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10910"
                     /db_xref="EnsemblGenomes-Tr:CAB12931"
                     /db_xref="GOA:O06735"
                     /db_xref="InterPro:IPR002891"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13105"
                     /db_xref="UniProtKB/Swiss-Prot:O06735"
                     /translation="MTHNPNIIWHPAAISKSDRQSLNGHKSCVLWFTGLSGSGKSVLA
                     NAVDEKLYRKGIQSYVLDGDNIRHGLNKDLGFQTGDRIENIRRIGEVAKLFVDSGQMI
                     LTAFISPFREDRDMVRALFPKGEFFEIYVKCPLHVCEQRDPKGLYKKARNGEIKHFTG
                     IDSPYEAPLSPDFIIESDQTSISDGADLIINALQNRGII*"
     gene            complement(1151845..1152444)
                     /gene="yisZ"
                     /locus_tag="BSU_10910"
                     /old_locus_tag="BSU10910"
     downshifts      complement(1151864)
                     /Source="Nicolas_upshifts"
                     /id="D593"
                     /incds=0
                     /nref=35
                     /ntot=44
                     /MaxReadThrough="1.69999"
                     /MaxDrop="6.8011"
                     /score="17.1506785"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U880"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1152441..1153610)
                     /gene="yitA"
                     /locus_tag="BSU_10920"
                     /old_locus_tag="BSU10920"
                     /EC_number="2.7.7.4"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15383836; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfate adenylyltransferase"
                     /protein_id="NP_388973.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10920"
                     /db_xref="EnsemblGenomes-Tr:CAB12932"
                     /db_xref="GOA:O06736"
                     /db_xref="InterPro:IPR002650"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR015947"
                     /db_xref="InterPro:IPR020792"
                     /db_xref="InterPro:IPR024951"
                     /db_xref="InterPro:IPR025980"
                     /db_xref="SubtiList:BG13106"
                     /db_xref="UniProtKB/Swiss-Prot:O06736"
                     /translation="MNGNEPHGGVLINRCDPACHFEGCACQAELDQLALSDLELIAIG
                     GYSPLTGFLGEKDYHSVVKEMRLANGLPWSLPITLPVGEKTARQLSAGDHVKLVKDGV
                     TYGMITVTDIYQPDKTQEALSVFKTNDPAHPGVKKLLARPDYYIGGPITVSSLPDKSF
                     EQFYATPAETRAAFQKLGWKTIVGFQTRNPVHRAHEYIQKTALETVDGLLLHPLVGET
                     KSDDIPSDIRMESYQALLNHYYPKDRVMLSVFPAAMRYAGPREAIFHALVRKNYGCTH
                     FIVGRDHAGVGSYYGTYDAQNIFQSFTEEELGIKPLFFEHSFYCRKCGNMGTSKTCPH
                     SPRDHIHLSGTKVRELLRQGKKPPKEFSRPEVAAVLIKGLHQQPVAIKQNSGELQ*"
     gene            complement(1152441..1153610)
                     /gene="yitA"
                     /locus_tag="BSU_10920"
                     /old_locus_tag="BSU10920"
     S_feature       complement(1153611..1153722)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1171643_1171754_c"
                     /HighExp="S6, S7, S8, BT, S5, B36, G/S, Pyr, SMMPr, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S394"
     CDS             complement(1153723..1154433)
                     /gene="yitB"
                     /locus_tag="BSU_10930"
                     /old_locus_tag="BSU10930"
                     /EC_number="1.8.4.8"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15383836; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phospho-adenylylsulfate reductase"
                     /protein_id="NP_388974.2"
                     /db_xref="EnsemblGenomes-Gn:BSU10930"
                     /db_xref="EnsemblGenomes-Tr:CAB12933"
                     /db_xref="GOA:O06737"
                     /db_xref="InterPro:IPR002500"
                     /db_xref="InterPro:IPR004511"
                     /db_xref="InterPro:IPR011798"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="SubtiList:BG13107"
                     /db_xref="UniProtKB/Swiss-Prot:O06737"
                     /translation="MNETITYDTWNDMLSKQITDQLIDELDVLKWAYRTYGEKIVYAC
                     SFGAEGMVLLDLISKINKNAHIIFLDTGLHFQETYELIETVKERYPGFAIQMLEPELS
                     LTEQGTKYGGELWKHNPNLCCQLRKIEPLKKHLSGMTAWISGLRRDQSPTRKHIQYVN
                     LDQKFELIKICPLIHWTWDDVWTYIRLHNLPYNKLHDQHYPSIGCEMCTLPSPDPNDE
                     RAGRWAGREKTECGLHQE*"
     gene            complement(1153723..1154433)
                     /gene="yitB"
                     /locus_tag="BSU_10930"
                     /old_locus_tag="BSU10930"
     promotor_-10    complement(1154477..1154496)
                     /Source="Nicolas_upshift_promotors"
                     /id="U880"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1285
                     /SigmaFactorBS="aatggttccgcacctcattttaggcgggcgcggcacctaaaA
                     CCTGAACCTttatgcaaaaaaTGAATAGTCTGCCTATAACTcgatcaatagataaaaa
                     a"
                     /listShort="yitB, S394, yitA, yisZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1154499)
                     /Source="Nicolas_upshifts"
                     /id="U880"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1285
                     /SigmaFactorBS="aatggttccgcacctcattttaggcgggcgcggcacctaaaA
                     CCTGAACCTttatgcaaaaaaTGAATAGTCTGCCTATAACTcgatcaatagataaaaa
                     a"
                     /listShort="yitB, S394, yitA, yisZ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1154509..1154518)
                     /Source="Nicolas_upshift_promotors"
                     /id="U880"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1285
                     /SigmaFactorBS="aatggttccgcacctcattttaggcgggcgcggcacctaaaA
                     CCTGAACCTttatgcaaaaaaTGAATAGTCTGCCTATAACTcgatcaatagataaaaa
                     a"
                     /listShort="yitB, S394, yitA, yisZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1154548..1154557
                     /Source="Nicolas_upshift_promotors"
                     /id="U881"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1286
                     /SigmaFactorBS="aggtgccgcgcccgcctaaaatgaggTGCGGAACCAttaaga
                     gcccggcTGAATATGCTTTTTAGCAAAatggttttatgcccaaggagaggtagtatgc
                     c"
                     /listShort="yitC, yitD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1154571..1154590
                     /Source="Nicolas_upshift_promotors"
                     /id="U881"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1286
                     /SigmaFactorBS="aggtgccgcgcccgcctaaaatgaggTGCGGAACCAttaaga
                     gcccggcTGAATATGCTTTTTAGCAAAatggttttatgcccaaggagaggtagtatgc
                     c"
                     /listShort="yitC, yitD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1154582
                     /Source="Nicolas_upshifts"
                     /id="U881"
                     /multdbtbs="SigE,SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1286
                     /SigmaFactorBS="aggtgccgcgcccgcctaaaatgaggTGCGGAACCAttaaga
                     gcccggcTGAATATGCTTTTTAGCAAAatggttttatgcccaaggagaggtagtatgc
                     c"
                     /listShort="yitC, yitD"
                     /GFF_Attribute="listLong"
     CDS             1154618..1155304
                     /gene="slpH"
                     /locus_tag="BSU_10940"
                     /old_locus_tag="BSU10940"
                     /EC_number="3.1.3.71"
                     /function="15.7: Sporulation and germination"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 3346220, 11830598,
                     15383836, 16341843; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho,3-sulfolactate phosphatase
                     (sporulation related)"
                     /protein_id="NP_388975.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10940"
                     /db_xref="EnsemblGenomes-Tr:CAB12934"
                     /db_xref="GOA:O06738"
                     /db_xref="InterPro:IPR005238"
                     /db_xref="InterPro:IPR036702"
                     /db_xref="SubtiList:BG13108"
                     /db_xref="UniProtKB/Swiss-Prot:O06738"
                     /translation="MPIAIYQGHHHSLAPADINIVIDVIRAFTVAHYAFIGGAKEILL
                     VRTADEAFALKDTYPDYVLTGEEKGVGISGFDLDNSPKRMAGQNMTDKSLIQKTTNGV
                     TAALGALNAKHLFVTGFSNAKTTAQHVKKLVANDCVINIVASHPSGDDDMACAEYIKG
                     IIEGTNVVTAAEAIERIKGSSVAEKFFDCRQPLFDSEDIVYCTKELTGDFVMKVKQDG
                     EVPTIERVII*"
     gene            1154618..1155304
                     /gene="slpH"
                     /locus_tag="BSU_10940"
                     /old_locus_tag="BSU10940"
     CDS             1155301..1156059
                     /gene="slpS"
                     /locus_tag="BSU_10950"
                     /old_locus_tag="BSU10950"
                     /EC_number="4.4.1.19"
                     /function="16.14: Store"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 11830598, 15014443,
                     15383836; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-3-sulfolactate synthase"
                     /protein_id="NP_388976.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10950"
                     /db_xref="EnsemblGenomes-Tr:CAB12935"
                     /db_xref="GOA:O06739"
                     /db_xref="InterPro:IPR003830"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR036112"
                     /db_xref="PDB:1U83"
                     /db_xref="SubtiList:BG13109"
                     /db_xref="UniProtKB/Swiss-Prot:O06739"
                     /translation="MNDFSLELPVRTNKPRETGQSILIDNGYPLQFFKDAIAGASDYI
                     DFVKFGWGTSLLTKDLEEKISTLKEHDITFFFGGTLFEKYVSQKKVNEFHRYCTYFGC
                     EYIEISNGTLPMTNKEKAAYIADFSDEFLVLSEVGSKDAELASRQSSEEWLEYIVEDM
                     EAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFI
                     QKIGPNVNLANIPFHDAIALETLRLGLRSDTFFL*"
     gene            1155301..1156059
                     /gene="slpS"
                     /locus_tag="BSU_10950"
                     /old_locus_tag="BSU10950"
     downshifts      1156056
                     /Source="Nicolas_upshifts"
                     /id="D594"
                     /incds=0
                     /nref=2
                     /ntot=20
                     /MaxReadThrough="2.37654"
                     /MaxDrop="4.17689"
                     /score="-1.32868938"
                     /energy="-17.6"
                     /TU="NA"
                     /idTUdmin="U881"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1156104..1156733)
                     /gene="yitE"
                     /locus_tag="BSU_10960"
                     /old_locus_tag="BSU10960"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     26335199; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein"
                     /protein_id="NP_388977.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10960"
                     /db_xref="EnsemblGenomes-Tr:CAB12936"
                     /db_xref="GOA:O06740"
                     /db_xref="InterPro:IPR003740"
                     /db_xref="SubtiList:BG13110"
                     /db_xref="UniProtKB/Swiss-Prot:O06740"
                     /translation="MAELLMKAKLTFMIVVGGVLQGLGMSLFLFPHDIPTGGAAGIAV
                     LLHYLFQIPHGFSVWAVNVSMLFTALKWLEMRTFTGTLASITVTSVSVLIFDAVFPDI
                     TSNLWLDLASGAVLLGLGIGLLYKYKISNGGFGALALMISIYRGGNPGTILLIMNCII
                     FMVTASIIDWGIVIQALICQVISTRVIDFIYNIRLTSLPYLTPMYRHKK*"
     gene            complement(1156104..1156733)
                     /gene="yitE"
                     /locus_tag="BSU_10960"
                     /old_locus_tag="BSU10960"
     promotor_-10    complement(1156767..1156785)
                     /Source="Nicolas_upshift_promotors"
                     /id="U882"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=996
                     /SigmaFactorBS="tggctcagcctattaagctgggccatttctttattttgaGAC
                     ATAaataatggacagccTCATAAAATGAAAACAGCGgacaagtcttttcataaaggag
                     c"
                     /listShort="yitE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1156784)
                     /Source="Nicolas_upshifts"
                     /id="U882"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=996
                     /SigmaFactorBS="tggctcagcctattaagctgggccatttctttattttgaGAC
                     ATAaataatggacagccTCATAAAATGAAAACAGCGgacaagtcttttcataaaggag
                     c"
                     /listShort="yitE"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1156800..1156805)
                     /Source="Nicolas_upshift_promotors"
                     /id="U882"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=996
                     /SigmaFactorBS="tggctcagcctattaagctgggccatttctttattttgaGAC
                     ATAaataatggacagccTCATAAAATGAAAACAGCGgacaagtcttttcataaaggag
                     c"
                     /listShort="yitE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1156829..1157944)
                     /gene="yitF"
                     /locus_tag="BSU_10970"
                     /old_locus_tag="BSU10970"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10960106, 11747447,
                     27994575; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enolase superfamily enzyme (isomerase
                     /dehydratase)"
                     /protein_id="NP_388978.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10970"
                     /db_xref="EnsemblGenomes-Tr:CAB12937"
                     /db_xref="GOA:O06741"
                     /db_xref="InterPro:IPR013341"
                     /db_xref="InterPro:IPR013342"
                     /db_xref="InterPro:IPR029017"
                     /db_xref="InterPro:IPR029065"
                     /db_xref="InterPro:IPR036849"
                     /db_xref="PDB:2GDQ"
                     /db_xref="PDB:2GGE"
                     /db_xref="SubtiList:BG13111"
                     /db_xref="UniProtKB/Swiss-Prot:O06741"
                     /translation="MKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDG
                     WGECVDWLPALHVGFTKRIIPFLLGKQAGSRLSLVRTIQKWHQRAASAVSMALTEIAA
                     KAADCSVCELWGGRYREEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIG
                     GTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLEEPLP
                     FDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDC
                     LQLARYFGVRASAHAYDGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPFTDL
                     VSLQPSKGMVHIPKGKGIGTEINMEIVNRYKWDGSAY*"
     gene            complement(1156829..1157944)
                     /gene="yitF"
                     /locus_tag="BSU_10970"
                     /old_locus_tag="BSU10970"
     downshifts      complement(1156858)
                     /Source="Nicolas_upshifts"
                     /id="D595"
                     /incds=0
                     /nref=11
                     /ntot=42
                     /MaxReadThrough="1.81817"
                     /MaxDrop="4.27426"
                     /score="13.5713023"
                     /energy="-14.5"
                     /TU="NA"
                     /idTUdmin="U883"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1157953..1159221)
                     /gene="yitG"
                     /locus_tag="BSU_10980"
                     /old_locus_tag="BSU10980"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10960106, 14762009,
                     15109717, 15849754, 16850406; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative efflux transporter"
                     /protein_id="NP_388979.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10980"
                     /db_xref="EnsemblGenomes-Tr:CAB12938"
                     /db_xref="GOA:Q796Q1"
                     /db_xref="InterPro:IPR001958"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13112"
                     /db_xref="UniProtKB/Swiss-Prot:Q796Q1"
                     /translation="MESSKQNNGMTIVAIGSIPLILTLGNSMLIPILPKMKSELHLSQ
                     FQVSLVITVFSLIAAFAIPIVGYLADRFSRKVIIIPCLILYGAGGLLAGFAAGFFDNA
                     YPWVMAGRALQGIGAAGTGPIAMALTGDLFKGAQESKVLGLVEASNGMGKVLSPIIGS
                     LIALLVWYGAFFAFPVFCIISIVLTWIFIKEKKKEKEPPPIGQYAKGLLSVFKHEGRW
                     LFTAYLAGATCLFTLFGILFYLSDVLEKTYDTDGVKKGLILAIPLLVMCVTSYTTGSK
                     IGQKQSLMKKLIVLGLAFMTVSYAALSFIENLVLFISVLVLSSIGSGLVLPCVNSFIT
                     GAVGKERRGFVTSLYGSVRFLGVAIGPPIFGRLMQWSRPGMFLSIAGLTLVVGILVMM
                     LIHVKQNNEETKEKEDPKMAGNRLQPAEER*"
     gene            complement(1157953..1159221)
                     /gene="yitG"
                     /locus_tag="BSU_10980"
                     /old_locus_tag="BSU10980"
     promotor_-10    complement(1159247..1159258)
                     /Source="Nicolas_upshift_promotors"
                     /id="U883"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=932
                     /SigmaFactorBS="acaggtatcttctgttcggttttttgctgtctgatcgcTGAA
                     TAAacgaagccatcagGGACATTCTAAGcagaagaaaaggagtgtgctctgagatgga
                     a"
                     /listShort="yitG, yitF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1159256)
                     /Source="Nicolas_upshifts"
                     /id="U883"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=932
                     /SigmaFactorBS="acaggtatcttctgttcggttttttgctgtctgatcgcTGAA
                     TAAacgaagccatcagGGACATTCTAAGcagaagaaaaggagtgtgctctgagatgga
                     a"
                     /listShort="yitG, yitF"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1159272..1159278)
                     /Source="Nicolas_upshift_promotors"
                     /id="U883"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=932
                     /SigmaFactorBS="acaggtatcttctgttcggttttttgctgtctgatcgcTGAA
                     TAAacgaagccatcagGGACATTCTAAGcagaagaaaaggagtgtgctctgagatgga
                     a"
                     /listShort="yitG, yitF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1159333..1160181)
                     /gene="yitH"
                     /locus_tag="BSU_10990"
                     /old_locus_tag="BSU10990"
                     /EC_number="2.3.1.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23944997; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_388980.1"
                     /db_xref="EnsemblGenomes-Gn:BSU10990"
                     /db_xref="EnsemblGenomes-Tr:CAB12939"
                     /db_xref="GOA:O06743"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13113"
                     /db_xref="UniProtKB/Swiss-Prot:O06743"
                     /translation="MDVVDELIKLHEEHVSGLLRLCGQAGWPDYGEQELKLLVQQGRF
                     FGYQNVSGDIISCIGLFLFGRLTSIGLVIVDKEYQRLGLGRRMVNACITQTDENTAIR
                     LCATKEGLPLYEKAGFHTAGSVRKYSCHSFQPYTKKLDAELTSFREQDFHDLTAADLA
                     AFGGDRSNLLQQLISASCECIIARNQDGQLIGYGLSVQTPANLKFGPIIAPSSDVAAQ
                     IITRLAAGKQGPMRIDIPSEHTSLHDSLIEMGFHKDDEPPILFYQKKAPIQNGHLYAL
                     ISQALG*"
     gene            complement(1159333..1160181)
                     /gene="yitH"
                     /locus_tag="BSU_10990"
                     /old_locus_tag="BSU10990"
     downshifts      complement(1159344)
                     /Source="Nicolas_upshifts"
                     /id="D596"
                     /incds=0
                     /nref=34
                     /ntot=209
                     /MaxReadThrough="2.34135"
                     /MaxDrop="3.51892"
                     /score="14.8688564"
                     /energy="-11.7"
                     /TU="NA"
                     /idTUdmin="U884"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1160186..1160635)
                     /gene="yitI"
                     /locus_tag="BSU_11000"
                     /old_locus_tag="BSU11000"
                     /EC_number="2.3.1.-"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23944997; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_388981.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11000"
                     /db_xref="EnsemblGenomes-Tr:CAB12940"
                     /db_xref="GOA:O06744"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13114"
                     /db_xref="UniProtKB/Swiss-Prot:O06744"
                     /translation="MLEVKTISVEDTYEIRHRILRPHQSIEQCKYKEDHAEGSFHLGV
                     FYDGTLISIASFSPQSQPLLTEASAYRLRGMATLEGYRDQKAGSTLIKHAEHKLAESG
                     VQAVWCNARHHVKGYYAKLGWKELGEPFDIPGIGNHIVMYKTLRTSR*"
     gene            complement(1160186..1160635)
                     /gene="yitI"
                     /locus_tag="BSU_11000"
                     /old_locus_tag="BSU11000"
     promotor_-10    complement(1160656..1160675)
                     /Source="Nicolas_upshift_promotors"
                     /id="U884"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig="0.999000999001"
                     /xcortree=2266
                     /SigmaFactorBS="cattaatttccaaaagactgcctgatcgaatcgggcagTCtt
                     tttcaacgagattCGTGTTACGATATAGAAAAAcaatcatgaggaggaacattatgct
                     c"
                     /listShort="yitI, yitH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1160670)
                     /Source="Nicolas_upshifts"
                     /id="U884"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig="0.999000999001"
                     /xcortree=2266
                     /SigmaFactorBS="cattaatttccaaaagactgcctgatcgaatcgggcagTCtt
                     tttcaacgagattCGTGTTACGATATAGAAAAAcaatcatgaggaggaacattatgct
                     c"
                     /listShort="yitI, yitH"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1160691..1160692)
                     /Source="Nicolas_upshift_promotors"
                     /id="U884"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.834165834165834"
                     /psig="0.999000999001"
                     /xcortree=2266
                     /SigmaFactorBS="cattaatttccaaaagactgcctgatcgaatcgggcagTCtt
                     tttcaacgagattCGTGTTACGATATAGAAAAAcaatcatgaggaggaacattatgct
                     c"
                     /listShort="yitI, yitH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1160725..1162563)
                     /gene="samT"
                     /locus_tag="BSU_11010"
                     /old_locus_tag="BSU11010"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10094622, 17264075,
                     20421295, 20951706, 26233166; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine S-methyltransferase
                     using (R,S)AdoMet and methylenetetrahydrofolate reductase
                     [NAD(P)H]"
                     /protein_id="NP_388982.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11010"
                     /db_xref="EnsemblGenomes-Tr:CAB12941"
                     /db_xref="GOA:O06745"
                     /db_xref="InterPro:IPR003171"
                     /db_xref="InterPro:IPR003726"
                     /db_xref="InterPro:IPR029041"
                     /db_xref="InterPro:IPR036589"
                     /db_xref="SubtiList:BG13115"
                     /db_xref="UniProtKB/Swiss-Prot:O06745"
                     /translation="MGLLEDLQRQVLIGDGAMGTLLYSYGIDRCFEELNISKPEEIQR
                     IHKAYVEAGANIIQTNTYGANYIKLSRHGLEDDIKKMNQEAVKIARASAGDAYVLGTM
                     GGIRTFNKNAYSLDEIKRSFREQLYLLLHEEPDGLLLETYYDLEEAREVLKIARKETD
                     LPIMLNVSMHEQGVLQDGTPLSDALRSIADLGADIVGINCRLGPYHMIEALSEVPIFD
                     DVFLSVYPNSSLPSLEEGRLVYETDDTYFQNSASEFRKQGARIIGGCCGTTPNHIRAM
                     AEAVGGLAPITEKEVKTRAKEFISVHHERTEPGLDEIAAKKRSIIVELDPPKKLSFDK
                     FLSAAAELKEAGIDALTLADNSLATPRISNVACGALVKQQLDMRSLVHITCRDRNIIG
                     LQSHLMGLDTLGLNDVLAITGDPSKIGDFPGATSVYDLTSFDLIRLIKQFNEGLSLSG
                     KPLGKKTNFSVAAAFNPNVRHLDKAVKRLEKKIDCGADYFVSQPVYSEQQLVDIHNET
                     KHLKTPIYIGIMPLTSSRNAEFIHNEIPGIKLSDTIREKMAHAGEDKEKQKAEGLAIA
                     RSLLDTACELFNGIYLITPFLRSDLTAELTSYIQQKDEQRQNIFLH*"
     gene            complement(1160725..1162563)
                     /gene="samT"
                     /locus_tag="BSU_11010"
                     /old_locus_tag="BSU11010"
     downshifts      complement(1160752)
                     /Source="Nicolas_upshifts"
                     /id="D597"
                     /incds=0
                     /nref=14
                     /ntot=91
                     /MaxReadThrough="3.04289"
                     /MaxDrop="4.13744"
                     /score="12.9586126"
                     /energy="-16.2"
                     /TU="U885"
                     /idTUdmin="U885"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     downshifts      complement(1162645)
                     /Source="Nicolas_upshifts"
                     /id="D598"
                     /incds=0
                     /nref=47
                     /ntot=128
                     /MaxReadThrough="8.00128"
                     /MaxDrop="5.61487"
                     /score="22.3754155"
                     /energy="-7.3"
                     /TU="U885,U887"
                     /idTUdmin="U887"
                     /TUdmin="-1079"
                     /isTUend="FALSE"
     misc_RNA        complement(1162653..1162770)
                     /gene="mswK"
                     /locus_tag="BSU_misc_RNA_12"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 17381305, 18039762"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 17381305, 18039762; Product type n: RNA"
                     /function="16.3: Control"
     gene            complement(1162653..1162770)
                     /gene="mswK"
                     /locus_tag="BSU_misc_RNA_12"
     promotor_-10    complement(1162822..1162841)
                     /Source="Nicolas_upshift_promotors"
                     /id="U885"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig="0.999000999001"
                     /xcortree=2886
                     /SigmaFactorBS="aatttataaatttcagataaattttctgattccTATTGATTa
                     ttgtctttattttCGGTAAATTTGGAGAAAGGGaaaaacgccagatatcttttggcac
                     t"
                     /listShort="NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="promotor_-10"
     upshifts        complement(1162836)
                     /Source="Nicolas_upshifts"
                     /id="U885"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig="0.999000999001"
                     /xcortree=2886
                     /SigmaFactorBS="aatttataaatttcagataaattttctgattccTATTGATTa
                     ttgtctttattttCGGTAAATTTGGAGAAAGGGaaaaacgccagatatcttttggcac
                     t"
                     /listShort="NA, yitJ"
                     /listLong="yitI, yitH"
     promotor_-35    complement(1162856..1162863)
                     /Source="Nicolas_upshift_promotors"
                     /id="U885"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.93906093906094"
                     /psig="0.999000999001"
                     /xcortree=2886
                     /SigmaFactorBS="aatttataaatttcagataaattttctgattccTATTGATTa
                     ttgtctttattttCGGTAAATTTGGAGAAAGGGaaaaacgccagatatcttttggcac
                     t"
                     /listShort="NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="promotor_-35"
     CDS             complement(1162877..1163368)
                     /gene="yitK"
                     /locus_tag="BSU_11020"
                     /old_locus_tag="BSU11020"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12943362, 25329577;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA or cyclic d-GMP binding protein"
                     /protein_id="NP_388983.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11020"
                     /db_xref="EnsemblGenomes-Tr:CAB12942"
                     /db_xref="InterPro:IPR007551"
                     /db_xref="InterPro:IPR035570"
                     /db_xref="InterPro:IPR035571"
                     /db_xref="InterPro:IPR036183"
                     /db_xref="SubtiList:BG13116"
                     /db_xref="UniProtKB/Swiss-Prot:O06746"
                     /translation="MAKESSFDIVSKVELPEVQNAIQIALKEISTRYDFKGSKSDISL
                     DKEELVLVSDDEFKLSQLKDVLVSKLIKRNVPTKNIDYGKVENASGGTVRQRAKLVQG
                     IDKDNAKKINTIIKNSGLKVKSQVQDDQVRVTGKNKDDLQQIISAVRGADLPIDVQFI
                     NFR*"
     gene            complement(1162877..1163368)
                     /gene="yitK"
                     /locus_tag="BSU_11020"
                     /old_locus_tag="BSU11020"
     promotor_-35    1163386..1163389
                     /Source="Nicolas_upshift_promotors"
                     /id="U886"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.997002997002997"
                     /xcortree=2548
                     /SigmaFactorBS="atcaaatgaactttcttttgccatatgaaaacctccataacA
                     TTTaacttatgtgttgaTTATAGTAGAATAAAGAGAAacttccaacagaacaaagaat
                     c"
                     /listShort="yitL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1163392..1163411)
                     /Source="Nicolas_upshift_promotors"
                     /id="U887"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=3057
                     /SigmaFactorBS="acattttttccaatcatcacaaattgattctttgttcTGTTG
                     GAAgtttctctttattcTACTATAATCAACACATAAGttaaatgttatggaggttttc
                     a"
                     /listShort="yitK, NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="promotor_-10"
     promotor_-10    1163404..1163423
                     /Source="Nicolas_upshift_promotors"
                     /id="U886"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.997002997002997"
                     /xcortree=2548
                     /SigmaFactorBS="atcaaatgaactttcttttgccatatgaaaacctccataacA
                     TTTaacttatgtgttgaTTATAGTAGAATAAAGAGAAacttccaacagaacaaagaat
                     c"
                     /listShort="yitL"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1163405
                     /Source="Nicolas_upshifts"
                     /id="U886"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.555444555444555"
                     /psig="0.997002997002997"
                     /xcortree=2548
                     /SigmaFactorBS="atcaaatgaactttcttttgccatatgaaaacctccataacA
                     TTTaacttatgtgttgaTTATAGTAGAATAAAGAGAAacttccaacagaacaaagaat
                     c"
                     /listShort="yitL"
                     /GFF_Attribute="listLong"
     upshifts        complement(1163410)
                     /Source="Nicolas_upshifts"
                     /id="U887"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=3057
                     /SigmaFactorBS="acattttttccaatcatcacaaattgattctttgttcTGTTG
                     GAAgtttctctttattcTACTATAATCAACACATAAGttaaatgttatggaggttttc
                     a"
                     /listShort="yitK, NA, yitJ"
                     /listLong="yitI, yitH"
     promotor_-35    complement(1163426..1163433)
                     /Source="Nicolas_upshift_promotors"
                     /id="U887"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.851148851148851"
                     /psig=1
                     /xcortree=3057
                     /SigmaFactorBS="acattttttccaatcatcacaaattgattctttgttcTGTTG
                     GAAgtttctctttattcTACTATAATCAACACATAAGttaaatgttatggaggttttc
                     a"
                     /listShort="yitK, NA, yitJ"
                     /listLong="yitI, yitH"
                     /label="promotor_-35"
     CDS             1163467..1164363
                     /gene="yitL"
                     /locus_tag="BSU_11030"
                     /old_locus_tag="BSU11030"
                     /function="9.4: RNA processing"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 20399190; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="NP_388984.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11030"
                     /db_xref="EnsemblGenomes-Tr:CAB12943"
                     /db_xref="GOA:O06747"
                     /db_xref="InterPro:IPR003029"
                     /db_xref="InterPro:IPR012340"
                     /db_xref="InterPro:IPR014464"
                     /db_xref="InterPro:IPR022967"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13117"
                     /db_xref="UniProtKB/Swiss-Prot:O06747"
                     /translation="MLTKSAENKRNRKDDSMRPGQQLTLSIDHQTDFGYFLTDGEDTI
                     LLHNSEMTEDIEDRDEVEVFIYVDQQERLAATMKIPIISADEYGWVEVVDKVEDMGVF
                     VDVGLSKDALVATEHLPPYEDVWPQKGDKLYCMLKVTNRGRMFAKPAPEDIISELFTD
                     ASEDLMNKELTGTVYRLIASGSFVITDDGIRCFIHPSERKEEPRLGSRVTGRVIQVKE
                     DGSVNLSLLPRKQDAMSVDAECILTYMRMRNGAMPYSDKSQPDDIRERFNMSKAAFKR
                     ALGHLMKNGKVYQENGWTYEKK*"
     gene            1163467..1164363
                     /gene="yitL"
                     /locus_tag="BSU_11030"
                     /old_locus_tag="BSU11030"
     downshifts      1164350
                     /Source="Nicolas_upshifts"
                     /id="D599"
                     /incds=0
                     /nref=232
                     /ntot=261
                     /MaxReadThrough="1.78082"
                     /MaxDrop="6.73614"
                     /score="40.361011"
                     /energy="-21.5"
                     /TU="NA"
                     /idTUdmin="U886"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1164416..1165000)
                     /gene="yitM"
                     /locus_tag="BSU_11040"
                     /old_locus_tag="BSU11040"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 11557812"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388985.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11040"
                     /db_xref="EnsemblGenomes-Tr:CAB12944"
                     /db_xref="GOA:O06748"
                     /db_xref="InterPro:IPR023888"
                     /db_xref="SubtiList:BG13118"
                     /db_xref="UniProtKB/Swiss-Prot:O06748"
                     /translation="MKKAFLVFLSVVLVTTVFLVKQQESVAQAKQLEYSGEEIFKGFV
                     FAQGEVGKQLPEVFNKAMTDKLNTKQAKAFANQVVADIKKEDADFFDNLKKAVYSKDA
                     LKVDELLKKAGQIVEEKVEAAKEIAASKDDTSRVQAELVNTVDTANYFYYVSYVAAAG
                     ALILIILAIDITPIAISDNVDREMAIRTLVDELN*"
     gene            complement(1164416..1165000)
                     /gene="yitM"
                     /locus_tag="BSU_11040"
                     /old_locus_tag="BSU11040"
     downshifts      complement(1164426)
                     /Source="Nicolas_upshifts"
                     /id="D600"
                     /incds=0
                     /nref=68
                     /ntot=158
                     /MaxReadThrough="1.3386"
                     /MaxDrop="7.40935"
                     /score="10.143892"
                     /energy="-21.5"
                     /TU="NA"
                     /idTUdmin="U888"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1164997..1165926)
                     /gene="yitO"
                     /locus_tag="BSU_11055"
                     /old_locus_tag="BSU11055"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11557812, 15849754,
                     16850406; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein with
                     HTTM domain"
                     /protein_id="NP_388987.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11055"
                     /db_xref="EnsemblGenomes-Tr:CAB12946"
                     /db_xref="GOA:O06750"
                     /db_xref="InterPro:IPR011020"
                     /db_xref="InterPro:IPR023894"
                     /db_xref="SubtiList:BG13120"
                     /db_xref="UniProtKB/Swiss-Prot:O06750"
                     /translation="MLENIKQTITRWDERNPWTNVYGLARSIIALSSLLTLLINHPSL
                     IMKPASGISSYPACKMNLSLFCLGENNYMMLNLFRWVCIAILVLVVIGWRPRITGVLH
                     WYVSYSLQSSLIVIDGGEQAAAVMTFLLLPITLTDPRKWHWSTRPIEGKRTLGKITAF
                     ISYFVIRIQVAVLYFHSTVAKLSQQEWVDGTAVYYFAQEKTIGFNGFFQALTKPIVTS
                     PFVVIPTWGTLLVQIVIFAALFAPKKHWRLILIIAVFMHEIFAVMLGLISFSIIMAGI
                     LILYLTPIDSTIQFTYIRRLLWNKKHKKGEVSV*"
     gene            complement(1164997..1165926)
                     /gene="yitO"
                     /locus_tag="BSU_11055"
                     /old_locus_tag="BSU11055"
     misc_feature    complement(1165082)
                     /Source="Nicolas_upshift_promotors"
                     /id="U888"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.232767232767233"
                     /psig="0.63936063936064"
                     /xcortree=2974
                     /SigmaFactorBS="agtcatgctgggcctcatcagtttttcgattatcatggccgg
                     cattttgatattgtatctcaCtcctatcgattccacgattcaatttacatatattcgc
                     a"
                     /listShort="yitM"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1165084)
                     /Source="Nicolas_upshifts"
                     /id="U888"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.232767232767233"
                     /psig="0.63936063936064"
                     /xcortree=2974
                     /SigmaFactorBS="agtcatgctgggcctcatcagtttttcgattatcatggccgg
                     cattttgatattgtatctcaCtcctatcgattccacgattcaatttacatatattcgc
                     a"
                     /listShort="yitM"
                     /GFF_Attribute="listLong"
     CDS             complement(1165911..1166447)
                     /gene="yitP"
                     /locus_tag="BSU_11070"
                     /old_locus_tag="BSU11070"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 6289325, 11557812"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_388988.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11070"
                     /db_xref="EnsemblGenomes-Tr:CAB12947"
                     /db_xref="GOA:O06751"
                     /db_xref="InterPro:IPR023902"
                     /db_xref="SubtiList:BG13121"
                     /db_xref="UniProtKB/Swiss-Prot:O06751"
                     /translation="MQKSISFFVIFSILWGSLFLFSIIGSLGTTPIPLTKDSKFLMSS
                     ILPQGWGFFSKNPRDTAIGLYEAENASAKVRWPNMRADNLFGLYRYGRSQGVEMGVIY
                     SQVGKEQWTACKEKDLGACKSKAKTVQLKTPAPRPLLCGSYYLTKEDIVPWSYSKYTP
                     SSYQVKSIVKVVISCSKT*"
     gene            complement(1165911..1166447)
                     /gene="yitP"
                     /locus_tag="BSU_11070"
                     /old_locus_tag="BSU11070"
     promotor_-10    complement(1166483..1166502)
                     /Source="Nicolas_upshift_promotors"
                     /id="U889"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.988011988011988"
                     /xcortree=2975
                     /SigmaFactorBS="ccttttaacaaaaatggaatttctcatactttttaacCTTTt
                     tattacataaatgTTTTTATATTATGAAAAGTGtaaaaacgattcttcaggttaaaag
                     g"
                     /listShort="yitP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1166497)
                     /Source="Nicolas_upshifts"
                     /id="U889"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.988011988011988"
                     /xcortree=2975
                     /SigmaFactorBS="ccttttaacaaaaatggaatttctcatactttttaacCTTTt
                     tattacataaatgTTTTTATATTATGAAAAGTGtaaaaacgattcttcaggttaaaag
                     g"
                     /listShort="yitP"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1166517..1166520)
                     /Source="Nicolas_upshift_promotors"
                     /id="U889"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.71028971028971"
                     /psig="0.988011988011988"
                     /xcortree=2975
                     /SigmaFactorBS="ccttttaacaaaaatggaatttctcatactttttaacCTTTt
                     tattacataaatgTTTTTATATTATGAAAAGTGtaaaaacgattcttcaggttaaaag
                     g"
                     /listShort="yitP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1166588..1166595
                     /Source="Nicolas_upshift_promotors"
                     /id="U890"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=3150
                     /SigmaFactorBS="aaaggaaaaacaggacattttacactgctatatgtGATTGAT
                     AtatagtgtttttttCGATATATTTAAACCATGAAaacgaatcaagttaatgaccgct
                     g"
                     /listShort="yizB, yitQ, yitR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1166610..1166629
                     /Source="Nicolas_upshift_promotors"
                     /id="U890"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=3150
                     /SigmaFactorBS="aaaggaaaaacaggacattttacactgctatatgtGATTGAT
                     AtatagtgtttttttCGATATATTTAAACCATGAAaacgaatcaagttaatgaccgct
                     g"
                     /listShort="yizB, yitQ, yitR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1166613
                     /Source="Nicolas_upshifts"
                     /id="U890"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.767232767232767"
                     /psig=1
                     /xcortree=3150
                     /SigmaFactorBS="aaaggaaaaacaggacattttacactgctatatgtGATTGAT
                     AtatagtgtttttttCGATATATTTAAACCATGAAaacgaatcaagttaatgaccgct
                     g"
                     /listShort="yizB, yitQ, yitR"
                     /GFF_Attribute="listLong"
     CDS             1166625..1166972
                     /gene="yizB"
                     /locus_tag="BSU_11079"
                     /old_locus_tag="BSU11079"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 23504016; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator"
                     /protein_id="YP_003097701.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11079"
                     /db_xref="EnsemblGenomes-Tr:CAX52589"
                     /db_xref="GOA:C0H3Y4"
                     /db_xref="InterPro:IPR005149"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y4"
                     /translation="MKTNQVNDRWIVQFRKGIFELAILSLLRSKPMYGYELTSSLKTT
                     SALAISEGAIYPILKRMTEKGWIEFFWEDSLDGPKRKYYKMTQKGEEMLKERLEKYLE
                     THQALLSLSGDLL*"
     gene            1166625..1166972
                     /gene="yizB"
                     /locus_tag="BSU_11079"
                     /old_locus_tag="BSU11079"
     CDS             1166969..1167556
                     /gene="yitQ"
                     /locus_tag="BSU_11080"
                     /old_locus_tag="BSU11080"
                     /function="18: Unknown function"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 23504016"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388989.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11080"
                     /db_xref="EnsemblGenomes-Tr:CAB12948"
                     /db_xref="GOA:O06752"
                     /db_xref="SubtiList:BG13122"
                     /db_xref="UniProtKB/Swiss-Prot:O06752"
                     /translation="MNGQLIIDRYMEELNAELANMPDVERENAIDELKGHITAFVQDR
                     IKAGLSEEELQEAVESEFSHPKELAELMMGDGGETKRRRSLLGKSWISVLLIVTIIAL
                     PLLPSDFRHLPLAVYLMVLAGYVWKRKKLVMFAGVRKNKMRSQKEIVKISRVGAVYLL
                     FLAVVLLLSPFLNALVVLLLIAVSCAAFFLFLNIK*"
     gene            1166969..1167556
                     /gene="yitQ"
                     /locus_tag="BSU_11080"
                     /old_locus_tag="BSU11080"
     CDS             1167576..1167869
                     /gene="yitR"
                     /locus_tag="BSU_11090"
                     /old_locus_tag="BSU11090"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_388990.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11090"
                     /db_xref="EnsemblGenomes-Tr:CAB12949"
                     /db_xref="GOA:O06753"
                     /db_xref="InterPro:IPR017259"
                     /db_xref="SubtiList:BG13123"
                     /db_xref="UniProtKB/Swiss-Prot:O06753"
                     /translation="MEISINYLLIVIALLFFVVAYFVGIKKQTWMLAGFNEARIRDKD
                     RLARIAGYFFLNSGLFILLNSFISFQGQEQLIPPLILAYGAGVIIYVNKKLVE*"
     gene            1167576..1167869
                     /gene="yitR"
                     /locus_tag="BSU_11090"
                     /old_locus_tag="BSU11090"
     downshifts      1167849
                     /Source="Nicolas_upshifts"
                     /id="D601"
                     /incds=0
                     /nref=119
                     /ntot=240
                     /MaxReadThrough="1.96008"
                     /MaxDrop="5.72545"
                     /score="2.11183863"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U890"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      1167893
                     /Source="Nicolas_upshifts"
                     /id="D602"
                     /incds=0
                     /nref=1
                     /ntot=15
                     /MaxReadThrough="0.34732"
                     /MaxDrop="3.0285"
                     /score="2.11183863"
                     /energy="-12.6"
                     /TU="NA"
                     /idTUdmin="U890"
                     /TUdmin=44
                     /isTUend="FALSE"
     CDS             1168005..1169621
                     /gene="nprB"
                     /locus_tag="BSU_11100"
                     /old_locus_tag="BSU11100"
                     /EC_number="3.4.24.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:1917867, 16672610"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1917867, 16672610;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular neutral protease B"
                     /protein_id="NP_388991.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11100"
                     /db_xref="EnsemblGenomes-Tr:CAB12950"
                     /db_xref="GOA:P39899"
                     /db_xref="InterPro:IPR001570"
                     /db_xref="InterPro:IPR011096"
                     /db_xref="InterPro:IPR013856"
                     /db_xref="InterPro:IPR023612"
                     /db_xref="InterPro:IPR025711"
                     /db_xref="SubtiList:BG10691"
                     /db_xref="UniProtKB/Swiss-Prot:P39899"
                     /translation="MRNLTKTSLLLAGLCTAAQMVFVTHASAEESIEYDHTYQTPSYI
                     IEKSPQKPVQNTTQKESLFSYLDKHQTQFKLKGNANSHFRVSKTIKDPKTKQTFFKLT
                     EVYKGIPIYGFEQAVAMKENKQVKSFFGKVHPQIKDVSVTPSISEKKAIHTARRELEA
                     SIGKIEYLDGEPKGELYIYPHDGEYDLAYLVRLSTSEPEPGYWHYFIDAKNGKVIESF
                     NAIHEAAGTGIGVSGDEKSFDVTEQNGRFYLADETRGKGINTFDAKNLNETLFTLLSQ
                     LIGYTGKEIVSGTSVFNEPAAVDAHANAQAVYDYYSKTFGRDSFDQNGARITSTVHVG
                     KQWNNAAWNGVQMVYGDGDGSKFKPLSGSLDIVAHEITHAVTQYSAGLLYQGEPGALN
                     ESISDIMGAMADRDDWEIGEDVYTPGIAGDSLRSLEDPSKQGNPDHYSNRYTGTEDYG
                     GVHINSSIHNKAAYLLAEGGVHHGVQVEGIGREASEQIYYRALTYYVTASTDFSMMKQ
                     AAIEAANDLYGEGSKQSASVEKAYEAVGIL*"
     gene            1168005..1169621
                     /gene="nprB"
                     /locus_tag="BSU_11100"
                     /old_locus_tag="BSU11100"
     downshifts      1169609
                     /Source="Nicolas_upshifts"
                     /id="D603"
                     /incds=0
                     /nref=2
                     /ntot=55
                     /MaxReadThrough="0.278770000000001"
                     /MaxDrop="3.08544"
                     /score="2.81939887"
                     /energy="-8.6"
                     /TU="NA"
                     /idTUdmin="U890"
                     /TUdmin=1760
                     /isTUend="FALSE"
     CDS             complement(1169668..1170519)
                     /gene="fakBB"
                     /locus_tag="BSU_11110"
                     /old_locus_tag="BSU11110"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 25002480, 26774272,
                     27435445; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid kinase fatty acid binding subunit B"
                     /protein_id="NP_388992.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11110"
                     /db_xref="EnsemblGenomes-Tr:CAB12951"
                     /db_xref="GOA:P70945"
                     /db_xref="InterPro:IPR003797"
                     /db_xref="SubtiList:BG12244"
                     /db_xref="UniProtKB/Swiss-Prot:P70945"
                     /translation="MTVHLIADSATDLPRSYFEEKGIGFIPLRVSLGDKEFEDAVTIH
                     ADQIFEAMQNGETPKTSQASPQTIKNVFLQYAETGDPALYIAFSSGLSGTYQTAVMIA
                     NEVKEEFPDFDLRVIDSKCASLGYGLAVRHAADLCINGNTIQEIETSVKNFCSQLEHI
                     FTVDDLTYLARGGRISKTSAFVGGLLNIKPLLQMEDGKLVPLEKIRGQKKLFKRIIEL
                     MKERGDDWSNQTVGISYAANKEKATDMKHLIEEAFKPKEIIMHPISSAIGSHAGPGTL
                     AIFFLRK*"
     gene            complement(1169668..1170519)
                     /gene="fakBB"
                     /locus_tag="BSU_11110"
                     /old_locus_tag="BSU11110"
     downshifts      complement(1169685)
                     /Source="Nicolas_upshifts"
                     /id="D604"
                     /incds=0
                     /nref=209
                     /ntot=263
                     /MaxReadThrough="0.727580000000001"
                     /MaxDrop="6.86927"
                     /score="-1.24586831"
                     /energy="-7.7"
                     /TU="NA"
                     /idTUdmin="U892"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1170066..1170073
                     /Source="Nicolas_upshift_promotors"
                     /id="U891"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig="0.996003996003996"
                     /xcortree=2481
                     /SigmaFactorBS="gtaaaaatgtgttcaagctggctgcaaaagtTCTTTACAgac
                     gtttcaatttcTTGTATTGTATTCCCGTTGAtacagagatcggcagcatgccggacag
                     c"
                     /listShort="S395, yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1170088..1170107
                     /Source="Nicolas_upshift_promotors"
                     /id="U891"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig="0.996003996003996"
                     /xcortree=2481
                     /SigmaFactorBS="gtaaaaatgtgttcaagctggctgcaaaagtTCTTTACAgac
                     gtttcaatttcTTGTATTGTATTCCCGTTGAtacagagatcggcagcatgccggacag
                     c"
                     /listShort="S395, yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1170093..1170618
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1188125_1188650"
                     /HighExp="G180, Paraq, G135, G150, Oxctl, C30, H2O2,
                     LBGstat, LBGexp, Lbexp"
                     /AntisenseName="yitS"
                     /AntisenseCor="-0.45830528686941202"
                     /AntisenseRegPval="-14.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S395"
     upshifts        1170095
                     /Source="Nicolas_upshifts"
                     /id="U891"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.78021978021978"
                     /psig="0.996003996003996"
                     /xcortree=2481
                     /SigmaFactorBS="gtaaaaatgtgttcaagctggctgcaaaagtTCTTTACAgac
                     gtttcaatttcTTGTATTGTATTCCCGTTGAtacagagatcggcagcatgccggacag
                     c"
                     /listShort="S395, yitT, S396, ipi"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1170560..1170579)
                     /Source="Nicolas_upshift_promotors"
                     /id="U892"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.558441558441558"
                     /psig="0.841158841158841"
                     /xcortree=594
                     /SigmaFactorBS="gctctttcttctttattatgttttcccttaaaacaaatattt
                     gaAcacgattttggcaaattaaTATGATATAGTTGGCTTAACtctcatgataacgagc
                     g"
                     /listShort="yitS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1170583)
                     /Source="Nicolas_upshifts"
                     /id="U892"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.558441558441558"
                     /psig="0.841158841158841"
                     /xcortree=594
                     /SigmaFactorBS="gctctttcttctttattatgttttcccttaaaacaaatattt
                     gaAcacgattttggcaaattaaTATGATATAGTTGGCTTAACtctcatgataacgagc
                     g"
                     /listShort="yitS"
                     /GFF_Attribute="listLong"
     promotor_-35    1170597..1170602
                     /Source="Nicolas_upshift_promotors"
                     /id="U893"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=738
                     /SigmaFactorBS="gttaagccaactatatcatattaatttgccaaaatcgTGTTC
                     AaatatttgttttaaGGGAAAACATAATAAAGAAgaaagagcggaggaacatgccatg
                     g"
                     /listShort="yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(1170599)
                     /Source="Nicolas_upshift_promotors"
                     /id="U892"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.558441558441558"
                     /psig="0.841158841158841"
                     /xcortree=594
                     /SigmaFactorBS="gctctttcttctttattatgttttcccttaaaacaaatattt
                     gaAcacgattttggcaaattaaTATGATATAGTTGGCTTAACtctcatgataacgagc
                     g"
                     /listShort="yitS"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1170617..1170635
                     /Source="Nicolas_upshift_promotors"
                     /id="U893"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=738
                     /SigmaFactorBS="gttaagccaactatatcatattaatttgccaaaatcgTGTTC
                     AaatatttgttttaaGGGAAAACATAATAAAGAAgaaagagcggaggaacatgccatg
                     g"
                     /listShort="yitT, S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1170620
                     /Source="Nicolas_upshifts"
                     /id="U893"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=738
                     /SigmaFactorBS="gttaagccaactatatcatattaatttgccaaaatcgTGTTC
                     AaatatttgttttaaGGGAAAACATAATAAAGAAgaaagagcggaggaacatgccatg
                     g"
                     /listShort="yitT, S396, ipi"
                     /GFF_Attribute="listLong"
     CDS             1170657..1171499
                     /gene="yitT"
                     /locus_tag="BSU_11120"
                     /old_locus_tag="BSU11120"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     23419162, 23824080; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_388993.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11120"
                     /db_xref="EnsemblGenomes-Tr:CAB12952"
                     /db_xref="GOA:P39803"
                     /db_xref="InterPro:IPR003740"
                     /db_xref="InterPro:IPR019264"
                     /db_xref="SubtiList:BG10850"
                     /db_xref="UniProtKB/Swiss-Prot:P39803"
                     /translation="MVLDQTKKLLIVIIGALLNAAGLNLFLIPADVYASGFTGVAQLL
                     SSVVDQYAPFYISTGTLLFLLNIPVGILGWLKVGKSFTVYSILSVALTTLFMGILPET
                     SLSHDILLNAVFGGVISAVGIGLTLKYGASTGGLDIVAMVLAKWKDKPVGTYFFILNG
                     IIILTAGLLQGWEKALYTLVTLYVTTRVIDAIHTRHMKLTAMIVTKKADEIKEAIYGK
                     MVRGITTVPAKGAFTNEQKEMMIIVITRYELYDLEKIVKEVDPKAFTNIVQTTGIFGF
                     FRKD*"
     gene            1170657..1171499
                     /gene="yitT"
                     /locus_tag="BSU_11120"
                     /old_locus_tag="BSU11120"
     promotor_-35    1171152..1171160
                     /Source="Nicolas_upshift_promotors"
                     /id="U894"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=467
                     /SigmaFactorBS="gcacgtatttcttcattctgaacgggattatcatcttgacgG
                     CAGGATTAttgcaaggttGGGAGAAAGCATTATATACcctggttacactatatgtgac
                     a"
                     /listShort="S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1171171..1171189
                     /Source="Nicolas_upshift_promotors"
                     /id="U894"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=467
                     /SigmaFactorBS="gcacgtatttcttcattctgaacgggattatcatcttgacgG
                     CAGGATTAttgcaaggttGGGAGAAAGCATTATATACcctggttacactatatgtgac
                     a"
                     /listShort="S396, ipi"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1171171
                     /Source="Nicolas_upshifts"
                     /id="U894"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=467
                     /SigmaFactorBS="gcacgtatttcttcattctgaacgggattatcatcttgacgG
                     CAGGATTAttgcaaggttGGGAGAAAGCATTATATACcctggttacactatatgtgac
                     a"
                     /listShort="S396, ipi"
                     /GFF_Attribute="listLong"
     S_feature       1171500..1171613
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1189532_1189645"
                     /HighExp="Etha, S8, Sw, M9-stat, S7, BC, Gly, S6, Salt,
                     C30"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH, SigB, SigA"
                     /TUshortPSig="0.968, 0.998, 0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S396"
     CDS             1171614..1171973
                     /gene="ipi"
                     /locus_tag="BSU_11130"
                     /old_locus_tag="BSU11130"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:8226659, 24555072"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8226659, 24555072;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular proteinase inhibitor BsuPI"
                     /protein_id="NP_388994.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11130"
                     /db_xref="EnsemblGenomes-Tr:CAB12953"
                     /db_xref="GOA:P39804"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR020481"
                     /db_xref="PDB:3ISY"
                     /db_xref="SubtiList:BG10852"
                     /db_xref="UniProtKB/Swiss-Prot:P39804"
                     /translation="MENQEVVLSIDAIQEPEQIKFNMSLKNQSERAIEFQFSTGQKFE
                     LVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGTYEVKVTFKG
                     RAENLKQVQAVQQFEVK*"
     gene            1171614..1171973
                     /gene="ipi"
                     /locus_tag="BSU_11130"
                     /old_locus_tag="BSU11130"
     downshifts      1171962
                     /Source="Nicolas_upshifts"
                     /id="D605"
                     /incds=0
                     /nref=34
                     /ntot=224
                     /MaxReadThrough="1.36729"
                     /MaxDrop="5.6855"
                     /score="43.7575824"
                     /energy="-15.6"
                     /TU="NA"
                     /idTUdmin="U893"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(1172004..1172201)
                     /gene="yizC"
                     /locus_tag="BSU_11139"
                     /old_locus_tag="BSU11139"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; genus orphan"
                     /protein_id="YP_003097702.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11139"
                     /db_xref="EnsemblGenomes-Tr:CAX52590"
                     /db_xref="InterPro:IPR024217"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y5"
                     /translation="MRNELFQQAKSFVQQAVMVTNGFEEGDQEQAILRAKNAVSSAYA
                     NSTDAERQQLHQFQNQLDKLQ*"
     gene            complement(1172004..1172201)
                     /gene="yizC"
                     /locus_tag="BSU_11139"
                     /old_locus_tag="BSU11139"
     downshifts      complement(1172017)
                     /Source="Nicolas_upshifts"
                     /id="D606"
                     /incds=0
                     /nref=150
                     /ntot=257
                     /MaxReadThrough="1.42333"
                     /MaxDrop="8.284"
                     /score="2.35557074"
                     /energy="-17.3"
                     /TU="NA"
                     /idTUdmin="U895"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(1172202..1172398)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1190234_1190430_c"
                     /HighExp="S8, S6, S5, S7, nit, ferm, BT, G/S, Pyr, S4"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99834599999999996"
                     /TUshortSig="SigGF, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S397"
     upshifts        complement(1172398)
                     /Source="Nicolas_upshifts"
                     /id="U895"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=848
                     /SigmaFactorBS="aagaaggtccgtattaatttttcccaCTCATAAaccttactt
                     tacccCACCATACTATTgaagacgactcatctcgtcaaagtatggaagggggcagtct
                     c"
                     /listShort="S397, yizC"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1172400..1172411)
                     /Source="Nicolas_upshift_promotors"
                     /id="U895"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=848
                     /SigmaFactorBS="aagaaggtccgtattaatttttcccaCTCATAAaccttactt
                     tacccCACCATACTATTgaagacgactcatctcgtcaaagtatggaagggggcagtct
                     c"
                     /listShort="S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(1172426..1172432)
                     /Source="Nicolas_upshift_promotors"
                     /id="U895"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=848
                     /SigmaFactorBS="aagaaggtccgtattaatttttcccaCTCATAAaccttactt
                     tacccCACCATACTATTgaagacgactcatctcgtcaaagtatggaagggggcagtct
                     c"
                     /listShort="S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1172458..1173270)
                     /gene="ribZC"
                     /locus_tag="BSU_11140"
                     /old_locus_tag="BSU11140"
                     /function="4.9: Riboflavin, FMN, and FAD"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1b: Function from experimental evidences
                     in the studied species; PubMedId: 25012491, 26316208;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-ribitylamino-2,4(1H,
                     3H)-pyrimidinedione 5'-phosphate phosphatase
                     (promiscuous)"
                     /protein_id="NP_388995.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11140"
                     /db_xref="EnsemblGenomes-Tr:CAB12954"
                     /db_xref="GOA:P70947"
                     /db_xref="InterPro:IPR000150"
                     /db_xref="InterPro:IPR006379"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="SubtiList:BG12245"
                     /db_xref="UniProtKB/Swiss-Prot:P70947"
                     /translation="METKPYLIALDLDGTLLKDDKTISENTLHTIQRLKDDGHYVCIS
                     TGRPYRSSSMYYQQMELTTPIVNFNGAFVHHPQDDSWGRYHTSLPLDVVKQLVDISES
                     YNVHNVLAEVIDDVYFHYHDEHLIDAFNMNTTNVTVGDLRENLGEDVTSVLIHAKEED
                     VPAIRSYLSDVHAEVIDHRRWAAPWHVIEIIKSGMNKAVGLQKISDYYGVPRERIIAF
                     GDEDNDLEMLEFAGCGVAMGNGIDAVKQIANRTTATNEEDGVARFLKEYFSL*"
     gene            complement(1172458..1173270)
                     /gene="ribZC"
                     /locus_tag="BSU_11140"
                     /old_locus_tag="BSU11140"
     promotor_-10    complement(1173308..1173327)
                     /Source="Nicolas_upshift_promotors"
                     /id="U896"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.483516483516484"
                     /psig=1
                     /xcortree=2075
                     /SigmaFactorBS="tgtgcccctccttaggataaccataatcataagtgtaacaTG
                     TAGACAataaagatggtaaAAAGCTACACTGTAAGTAAGgcaaaacaagcaaaatcta
                     a"
                     /listShort="yitU, S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    1173328..1173335
                     /Source="Nicolas_upshift_promotors"
                     /id="U897"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=1854
                     /SigmaFactorBS="tagattttgcttgttttgccttacttacagtgtagctttTTA
                     CCATCtttattgtctaCATGTTACACTTATGATTATggttatcctaaggaggggcaca
                     t"
                     /listShort="yitV, yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(1173328)
                     /Source="Nicolas_upshifts"
                     /id="U896"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.483516483516484"
                     /psig=1
                     /xcortree=2075
                     /SigmaFactorBS="tgtgcccctccttaggataaccataatcataagtgtaacaTG
                     TAGACAataaagatggtaaAAAGCTACACTGTAAGTAAGgcaaaacaagcaaaatcta
                     a"
                     /listShort="yitU, S397, yizC"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1173341..1173348)
                     /Source="Nicolas_upshift_promotors"
                     /id="U896"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.483516483516484"
                     /psig=1
                     /xcortree=2075
                     /SigmaFactorBS="tgtgcccctccttaggataaccataatcataagtgtaacaTG
                     TAGACAataaagatggtaaAAAGCTACACTGTAAGTAAGgcaaaacaagcaaaatcta
                     a"
                     /listShort="yitU, S397, yizC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1173347..1173366
                     /Source="Nicolas_upshift_promotors"
                     /id="U897"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=1854
                     /SigmaFactorBS="tagattttgcttgttttgccttacttacagtgtagctttTTA
                     CCATCtttattgtctaCATGTTACACTTATGATTATggttatcctaaggaggggcaca
                     t"
                     /listShort="yitV, yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1173349
                     /Source="Nicolas_upshifts"
                     /id="U897"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig=1
                     /xcortree=1854
                     /SigmaFactorBS="tagattttgcttgttttgccttacttacagtgtagctttTTA
                     CCATCtttattgtctaCATGTTACACTTATGATTATggttatcctaaggaggggcaca
                     t"
                     /listShort="yitV, yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
     CDS             1173391..1174158
                     /gene="yitV"
                     /locus_tag="BSU_11150"
                     /old_locus_tag="BSU11150"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 28293230; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative carboxylesterase"
                     /protein_id="NP_388996.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11150"
                     /db_xref="EnsemblGenomes-Tr:CAB12955"
                     /db_xref="GOA:P70948"
                     /db_xref="InterPro:IPR001375"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG12246"
                     /db_xref="UniProtKB/Swiss-Prot:P70948"
                     /translation="MIQIENQTVSGIPFLHIVKEENRHRAVPLVIFIHGFTSAKEHNL
                     HIAYLLAEKGFRAVLPEALHHGERGEEMAVEELAGHFWDIVLNEIEEIGVLKNHFEKE
                     GLIDGGRIGLAGTSMGGITTLGALTAYDWIKAGVSLMGSPNYVELFQQQIDHIQSQGI
                     EIDVPEEKVQQLMKRLELRDLSLQPEKLQQRPLLFWHGAKDKVVPYAPTRKFYDTIKS
                     HYSEQPERLQFIGDENADHKVPRAAVLKTIEWFETYL*"
     gene            1173391..1174158
                     /gene="yitV"
                     /locus_tag="BSU_11150"
                     /old_locus_tag="BSU11150"
     promotor_-35    1174167..1174173
                     /Source="Nicolas_upshift_promotors"
                     /id="U898"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=2071
                     /SigmaFactorBS="aaacgattgaatggtttgaaacgtacttataaagcactaaGT
                     TATTAacaagagctgaattTACGTTATACTGTAGAAAAAaggagtgagggaacgtgga
                     a"
                     /listShort="yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1174187
                     /Source="Nicolas_upshifts"
                     /id="U898"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=2071
                     /SigmaFactorBS="aaacgattgaatggtttgaaacgtacttataaagcactaaGT
                     TATTAacaagagctgaattTACGTTATACTGTAGAAAAAaggagtgagggaacgtgga
                     a"
                     /listShort="yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
     promotor_-10    1174188..1174207
                     /Source="Nicolas_upshift_promotors"
                     /id="U898"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.723276723276723"
                     /psig=1
                     /xcortree=2071
                     /SigmaFactorBS="aaacgattgaatggtttgaaacgtacttataaagcactaaGT
                     TATTAacaagagctgaattTACGTTATACTGTAGAAAAAaggagtgagggaacgtgga
                     a"
                     /listShort="yitW, S398, yitY, yitZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1174222..1174530
                     /gene="yitW"
                     /locus_tag="BSU_11160"
                     /old_locus_tag="BSU11160"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9209063; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein involved in Fe-S cluster
                     assembly, PaaD-like"
                     /protein_id="NP_388997.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11160"
                     /db_xref="EnsemblGenomes-Tr:CAB12956"
                     /db_xref="InterPro:IPR002744"
                     /db_xref="InterPro:IPR034904"
                     /db_xref="SubtiList:BG12247"
                     /db_xref="UniProtKB/Swiss-Prot:P70949"
                     /translation="MEEALKENIMGALEQVVDPELGVDIVNLGLVYDVDMDEDGLTHI
                     TMTLTSMGCPLAPIIVDEVKKALADLPEVKDTEVHIVWNPPWTRDKMSRYAKIALGIQ
                     *"
     gene            1174222..1174530
                     /gene="yitW"
                     /locus_tag="BSU_11160"
                     /old_locus_tag="BSU11160"
     downshifts      1174515
                     /Source="Nicolas_upshifts"
                     /id="D607"
                     /incds=0
                     /nref=3
                     /ntot=55
                     /MaxReadThrough="5.65659"
                     /MaxDrop="4.5598"
                     /score="14.9971829"
                     /energy="-14.7"
                     /TU="U897,U898"
                     /idTUdmin="U897"
                     /TUdmin="-2244"
                     /isTUend="FALSE"
     S_feature       1174560..1174825
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1192592_1192857"
                     /HighExp="Etha, dia15, dia5, H2O2, LoTm, Salt, S6, Diami,
                     S8, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba=1
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S398"
     CDS             1174826..1176256
                     /gene="yitY"
                     /locus_tag="BSU_11170"
                     /old_locus_tag="BSU11170"
                     /EC_number="1.-.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12682299, 16956367;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative FMN/FAD-binding oxidoreductase"
                     /protein_id="NP_388999.3"
                     /db_xref="EnsemblGenomes-Gn:BSU11170"
                     /db_xref="EnsemblGenomes-Tr:CAB12958"
                     /db_xref="GOA:Q796P5"
                     /db_xref="InterPro:IPR006094"
                     /db_xref="InterPro:IPR016164"
                     /db_xref="InterPro:IPR016166"
                     /db_xref="InterPro:IPR016167"
                     /db_xref="InterPro:IPR016169"
                     /db_xref="InterPro:IPR036318"
                     /db_xref="SubtiList:BG12249"
                     /db_xref="UniProtKB/Swiss-Prot:Q796P5"
                     /translation="MKKKLLAFALCTGAYAALFAYSVNSEQKTATSEMTDVSRLMPVK
                     IKQTVKGQEEEMLIDTVKEANRKNIKISIAGAQHSMGGHTYYEDGIVLDMTGYNKILS
                     LDQEKKTIRVQSGATWNDIQKYVNPYGLAVKVMQSQNIFTIGGSLSANAHGRDIRYGS
                     LIDTVKSFRLLKADGMIITVTPKDDLFTAVIGGYGLFGVILDVTLELTDDELYVMKTE
                     KMNYSTYSDYFSKHVKGNPDVRMHLARISTAKKGFLKDMYVTNYVLANHQDQLSSYSE
                     LKEDEYTGATKFALGLSRRYEWGRNWLWDTQQSYFLSQNGTEISRNNVMRSESKFLEY
                     ENNDNTDVLQEYFVPVKEYGSYIDDLRQTLSDEDLNLLNITIRYVQKNEKADLSYAKD
                     DMFSLVLLINEGFSKEDQADTARIIRRMTDVAIKHGGSYYLPYMTYQTKAQMRQAYPK
                     SEAFFQKKRTYDPDERFMNYFYQRYK*"
     gene            1174826..1176256
                     /gene="yitY"
                     /locus_tag="BSU_11170"
                     /old_locus_tag="BSU11170"
     CDS             1176301..1176795
                     /gene="yitZ"
                     /locus_tag="BSU_11180"
                     /old_locus_tag="BSU11180"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transport protein"
                     /protein_id="NP_389000.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11180"
                     /db_xref="EnsemblGenomes-Tr:CAB12959"
                     /db_xref="GOA:P70952"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG12250"
                     /db_xref="UniProtKB/Swiss-Prot:P70952"
                     /translation="MFFASSLIFPFYILFVKNIGSSYTQFGFSYGLFGLSGALIYPLL
                     GRLSERFDSRYFLLLNSWGMAVLLLYVPHIGSVVQVYIVQVLLGLFGAMQKHGEKVLI
                     ANFTDSGERGKKIGNYHFWTAVFSAAAIMLGGFLADFFTVQMIFYASSILYFLSGLMM
                     MKTG*"
     gene            1176301..1176795
                     /gene="yitZ"
                     /locus_tag="BSU_11180"
                     /old_locus_tag="BSU11180"
     downshifts      1176759
                     /Source="Nicolas_upshifts"
                     /id="D608"
                     /incds=0
                     /nref=49
                     /ntot=208
                     /MaxReadThrough="1.74762"
                     /MaxDrop="4.22077"
                     /score="34.1294744"
                     /energy="-13.2"
                     /TU="NA"
                     /idTUdmin="U897"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1176933..1176940
                     /Source="Nicolas_upshift_promotors"
                     /id="U899"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig="0.999000999001"
                     /xcortree=2913
                     /SigmaFactorBS="gcggaattcccattgaacagaaaatttataaatgaataaaaa
                     tattaaatatacGATTGAATtaatttttattcaTGTTATAATGTTAAATAATTtcaca
                     a"
                     /listShort="argC, argJ, argB, argD, carA, carB, argF,
                     yjzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1176939
                     /Source="Nicolas_upshifts"
                     /id="U899"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig="0.999000999001"
                     /xcortree=2913
                     /SigmaFactorBS="gcggaattcccattgaacagaaaatttataaatgaataaaaa
                     tattaaatatacGATTGAATtaatttttattcaTGTTATAATGTTAAATAATTtcaca
                     a"
                     /listShort="argC, argJ, argB, argD, carA, carB, argF,
                     yjzC"
                     /GFF_Attribute="listLong"
     promotor_-10    1176954..1176973
                     /Source="Nicolas_upshift_promotors"
                     /id="U899"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.861138861138861"
                     /psig="0.999000999001"
                     /xcortree=2913
                     /SigmaFactorBS="gcggaattcccattgaacagaaaatttataaatgaataaaaa
                     tattaaatatacGATTGAATtaatttttattcaTGTTATAATGTTAAATAATTtcaca
                     a"
                     /listShort="argC, argJ, argB, argD, carA, carB, argF,
                     yjzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1177002..1178039
                     /gene="argC"
                     /locus_tag="BSU_11190"
                     /old_locus_tag="BSU11190"
                     /EC_number="1.2.1.38"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:2117746, 3005232, 3106155, 6096674, 6096675, 8025667,
                     18455186"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2117746, 3005232,
                     3106155, 6096674, 6096675, 8025667, 18455186; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglutamate gamma-semialdehyde
                     dehydrogenase"
                     /protein_id="NP_389001.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11190"
                     /db_xref="EnsemblGenomes-Tr:CAB12960"
                     /db_xref="GOA:P23715"
                     /db_xref="InterPro:IPR000534"
                     /db_xref="InterPro:IPR000706"
                     /db_xref="InterPro:IPR012280"
                     /db_xref="InterPro:IPR023013"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG10191"
                     /db_xref="UniProtKB/Swiss-Prot:P23715"
                     /translation="MKIGIVGATGYGGTELVRILSHHPHAEECILYSSSGEGNVYSEG
                     YPHLTGLADQQLKPIDMNTIKHEIDIMFLAAPPGVSSELTPKLADAGITVIDLSGDLR
                     IKEPAEYEKWYKRTAAPKAVIQEAVYGLAELNQLQIQQAKLIANPGCFPTAVLLGLAP
                     LAQKKLLDESFVIVDAKTGVSGAGRKASMGTHFSELNDNFKIYKVNEHQHTPEIEQAL
                     NEWQPGLGPITFSAHLVPMTRGIMATMYTRLTCDLTADDLHDLYSEFYQDSYFVRVRP
                     KGQYPQTKEVYGSNFCDIAVTLDERTNRVTIVSVIDNLMKGAAGQAVQNFNLMNGWNE
                     ETGLTITPIYP*"
     gene            1177002..1178039
                     /gene="argC"
                     /locus_tag="BSU_11190"
                     /old_locus_tag="BSU11190"
     CDS             1178059..1179279
                     /gene="argJ"
                     /locus_tag="BSU_11200"
                     /old_locus_tag="BSU11200"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8025667, 10931207, 16409639, 24163341"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8025667, 10931207,
                     16409639, 24163341; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine acetyltransferase; amino-acid
                     acetyltransferase"
                     /protein_id="NP_389002.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11200"
                     /db_xref="EnsemblGenomes-Tr:CAB12961"
                     /db_xref="GOA:P36843"
                     /db_xref="InterPro:IPR002813"
                     /db_xref="InterPro:IPR016117"
                     /db_xref="SubtiList:BG10192"
                     /db_xref="UniProtKB/Swiss-Prot:P36843"
                     /translation="MIQLSEDQIVKVTGDVSSPKGFQAKGVHCGLRYSKKDLGVIISE
                     TPAVSAAVYTQSHFQAAPIKVTQDSLKHGPTLKAVIVNSAIANACTGEQGLKDAYTMR
                     ESFASQLGIEPELVAVSSTGVIGEHLDMEKIHAGIELLKETPAGSGDFEEAILTTDTV
                     IKQTCYELAIGGKTVTIGGAAKGSGMIHPNMATMLGFVTTDAAIEEKALQKALREITD
                     VSFNQITVDGETSTNDMVLVMANGCAENECLTEDHPDWPVFKKALLLTCEDLAKEIAR
                     DGEGATKLIEAQVQGAKNNLDANVIAKKIVGSNLVKTAVYGTDANWGRIIGAIGHSAA
                     QVTAEEVEVYLGGQCLFKNNEPQPFSESIAKEYLEGDEITIVIKMAEGDGNGRAWGCD
                     LTYDYIKINASYRT*"
     gene            1178059..1179279
                     /gene="argJ"
                     /locus_tag="BSU_11200"
                     /old_locus_tag="BSU11200"
     CDS             1179294..1180070
                     /gene="argB"
                     /locus_tag="BSU_11210"
                     /old_locus_tag="BSU11210"
                     /EC_number="2.7.2.8"
                     /experiment="publication(s) with functional evidences,
                     PMID:3005232, 8473852"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3005232, 8473852; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglutamate 5-phosphotransferase
                     (acetylglutamate kinase)"
                     /protein_id="NP_389003.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11210"
                     /db_xref="EnsemblGenomes-Tr:CAB12962"
                     /db_xref="GOA:P68729"
                     /db_xref="InterPro:IPR001048"
                     /db_xref="InterPro:IPR001057"
                     /db_xref="InterPro:IPR004662"
                     /db_xref="InterPro:IPR036393"
                     /db_xref="SubtiList:BG10193"
                     /db_xref="UniProtKB/Swiss-Prot:P68729"
                     /translation="MKKTIVFKCGGSVIRELSEEFYQNLKELRASGWKLAIVHGGGPE
                     ITNMLKRLNIKTEFSGGQRKTTKPVLEVAEMVLSGSVNKFFVAELAKHGLRAAGISGK
                     DGGLLEADYLDPETYGEVGEIKKVDASMVNALMENGIIPVIAPLSMTSDCKTLNVNAD
                     LAASAVAGALEADKLMFVTDVDGIMKEKQRLDVLTPKEIQMLIKQEVITGGMIPKVNS
                     ALSALSDQVSEVMIVNGKGSFFAEQTFQGTKIVKAKEAVS*"
     gene            1179294..1180070
                     /gene="argB"
                     /locus_tag="BSU_11210"
                     /old_locus_tag="BSU11210"
     CDS             1180067..1181224
                     /gene="argD"
                     /locus_tag="BSU_11220"
                     /old_locus_tag="BSU11220"
                     /EC_number="2.6.1.11"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 17012789; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylornithine aminotransferase"
                     /protein_id="NP_389004.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11220"
                     /db_xref="EnsemblGenomes-Tr:CAB12963"
                     /db_xref="GOA:P36839"
                     /db_xref="InterPro:IPR004636"
                     /db_xref="InterPro:IPR005814"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG10194"
                     /db_xref="UniProtKB/Swiss-Prot:P36839"
                     /translation="MSSLFQTYGRWDIDIKKAKGTYVEDQNGKTYLDFIQGIAVSNLG
                     HCHEAVTEAVKKQLDSVWHVSNLFQNSLQEQAAQKLAAHSAGDLVFFCNSGAEANEGA
                     IKLARKATGKTKIITFLQSFHGRTYAGMAATGQDKIKTGFGPMLGGFHYLPYNDPSAF
                     KALGEEGDIAAVMLETVQGEGGVNPASAEFLSAVQSFCKEKQALLIIDEIQTGIGRTG
                     KGFAYEHFGLSPDIITVAKGLGNGFPVGAVIGKKQLGEAFTPGSHGTTFGGNMLAMAA
                     VNATLQIVFQPDFLQEAADKGAFLKEQLEAELKSPFVKQIRGKGLMLGIECDGPVADI
                     IAELQTLGLLVLPAGPNVIRLLPPLTVTKDEIAEAVSKLKQAIAHHSAVNQ*"
     gene            1180067..1181224
                     /gene="argD"
                     /locus_tag="BSU_11220"
                     /old_locus_tag="BSU11220"
     CDS             1181295..1182356
                     /gene="carA"
                     /locus_tag="BSU_11230"
                     /old_locus_tag="BSU11230"
                     /EC_number="6.3.5.5"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:216664, 230177, 1116335"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 216664, 230177, 1116335;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine-specific carbamoyl-phosphate
                     synthetase(small subunit)"
                     /protein_id="NP_389005.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11230"
                     /db_xref="EnsemblGenomes-Tr:CAB12964"
                     /db_xref="GOA:P36838"
                     /db_xref="InterPro:IPR002474"
                     /db_xref="InterPro:IPR006274"
                     /db_xref="InterPro:IPR017926"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="InterPro:IPR035686"
                     /db_xref="InterPro:IPR036480"
                     /db_xref="SubtiList:BG10195"
                     /db_xref="UniProtKB/Swiss-Prot:P36838"
                     /translation="MEGYLVLEDGTSFSGELDGHENCTGEAVFFTGMTGYQEVLTDPS
                     YKGQIIVFTYPLIGNYGINEKDFESKKPQVKAAVVYEACDHFSHYEAVYSLKEYLQKW
                     NIPLLTHVDTRAVVKKIRANGTMGATVTASKEGAEIALQPENVAEQASAQEISTFGDG
                     NKHIALIDFGYKKSIASSLVKRGCKVTVVPYQQMEAVYNIKPDGIVLSNGPGDPKAIQ
                     PYLGKIKSIISRFPTLGICLGHQLIALAFGGNTFKLPFGHRGANHPVIDRKTKRVFMT
                     SQNHSYVVDEQSINEEELTIRFHHVNDTSVEGLAHKKLPVMSVQFHPEAHPGPAESEW
                     IFDDYLKNVIPARREIAHA*"
     gene            1181295..1182356
                     /gene="carA"
                     /locus_tag="BSU_11230"
                     /old_locus_tag="BSU11230"
     misc_feature    complement(1182190..1182209)
                     /Source="Nicolas_upshift_promotors"
                     /id="U900"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig="0.949050949050949"
                     /xcortree=2066
                     /SigmaFactorBS="gtggaattgaacactcatgacaggcagttttttatgggcaag
                     cccttcaacTGACGTATCATTGACATGATgaaacctgatggtgagctcttcttcatta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1182200)
                     /Source="Nicolas_upshifts"
                     /id="U900"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.869130869130869"
                     /psig="0.949050949050949"
                     /xcortree=2066
                     /SigmaFactorBS="gtggaattgaacactcatgacaggcagttttttatgggcaag
                     cccttcaacTGACGTATCATTGACATGATgaaacctgatggtgagctcttcttcatta
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             1182349..1185441
                     /gene="carB"
                     /locus_tag="BSU_11240"
                     /old_locus_tag="BSU11240"
                     /EC_number="6.3.5.5"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:216664, 1116335"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 216664, 1116335; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine-specific carbamoyl-phosphate
                     synthetase(large subunit)"
                     /protein_id="NP_389006.3"
                     /db_xref="EnsemblGenomes-Gn:BSU11240"
                     /db_xref="EnsemblGenomes-Tr:CAB12965"
                     /db_xref="GOA:P18185"
                     /db_xref="InterPro:IPR005479"
                     /db_xref="InterPro:IPR005480"
                     /db_xref="InterPro:IPR005483"
                     /db_xref="InterPro:IPR006275"
                     /db_xref="InterPro:IPR011761"
                     /db_xref="InterPro:IPR013815"
                     /db_xref="InterPro:IPR016185"
                     /db_xref="InterPro:IPR036897"
                     /db_xref="SubtiList:BG10196"
                     /db_xref="UniProtKB/Swiss-Prot:P18185"
                     /translation="MPKDTSISSILVIGSGPIIIGQAAEFDYSGTQGCIALKEEGYRV
                     ILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLANLGGQTALNLAVEL
                     EETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEIVDNEADALHFAE
                     SIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEKSIAGFKEIEY
                     EVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTASLTIISALD
                     VVGGCNIQFALDPFSKQYYVIEVNPRVSRSSALASKATGYPIAKMAAKLAVGYTLDEL
                     KNPLTGSTYASFEPALDYVIVKFPRWPFDKFKNADRKLGTKMKATGEVMAIERNLEAA
                     IQKAAASLELKNIGTHLPELSGLSIDTLWDLAITPDDRRFFVVMELLSRSVSIDDIHE
                     KTKIDPFFLHTFDNIIKLENRLMEAGSDLSFELLKKAKEKGFSDATIASLISKTEEEV
                     RALRKEMGITPSFKIVDTCAAEFDAKTNYFYSTYFGETDGDISRKEKKRALIIGSGPI
                     RIGQGVEFDYSAVHGVLTLQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVN
                     VAEQENIDFAIVQFGGQTAINAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELG
                     LKHAKGEIAYTKEEAASKASEIGYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSM
                     PYPILIDQYVSGKEVEIDLISDGEEVFIPTYTEHIERAGVHSGDSFAILPGPSITSGL
                     QQGMKDAAQKIARKLSFKGIMNIQFVIDNGNILVLEVNPRASRTVPVVSKVMGVPMIP
                     LATRLLAGASLKDLNPAVQNHHGVAVKFPVFSSHAIQDVDVKLGPEMKSTGEGMCVAY
                     DSNSALKKIYTRVWSQKGSIYLQNVPEDVKELAENAGFTIHEGTFASWMEQEGNSLHI
                     NLSGSEEARKERLEAMTHGIPVFTEEETVRAFLQSGSGHPQPVSLKDLYKKEVASCTQ
                     *"
     gene            1182349..1185441
                     /gene="carB"
                     /locus_tag="BSU_11240"
                     /old_locus_tag="BSU11240"
     CDS             1185429..1186388
                     /gene="argF"
                     /locus_tag="BSU_11250"
                     /old_locus_tag="BSU11250"
                     /EC_number="2.1.3.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3099126, 6409881, 8025667, 9346304, 16585758,
                     26443366"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3099126, 6409881,
                     8025667, 9346304, 16585758, 26443366; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="NP_389007.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11250"
                     /db_xref="EnsemblGenomes-Tr:CAB12966"
                     /db_xref="GOA:P18186"
                     /db_xref="InterPro:IPR002292"
                     /db_xref="InterPro:IPR006130"
                     /db_xref="InterPro:IPR006131"
                     /db_xref="InterPro:IPR006132"
                     /db_xref="InterPro:IPR024904"
                     /db_xref="InterPro:IPR036901"
                     /db_xref="SubtiList:BG10197"
                     /db_xref="UniProtKB/Swiss-Prot:P18186"
                     /translation="MHTVTQTSLYGKDLLTLKDLSEEDINALLAEAGELKQNKIQPIF
                     HGKTLAMIFEKSSTRTRVSFEAGMAQLGGSALFLSQKDLQLGRGETVADTAKVLSGYV
                     DAIMIRTFEHEKVEELAKEADIPVINGLTDKYHPCQALADLLTIKEIKGKLKGVKVAY
                     IGDGNNVAHSLMIGCAKMGCDISIASPKGYEVLDEAAEAAKTYALQSGSSVTLTDDPI
                     EAVKDADVIYSDVFTSMGQEAEEQERLAVFAPYQVNAALVSHAKPDYTFLHCLPAHRE
                     EEVTAEIIDGPNSAVFQQAENRLHVQKALLKAILYKGESSKNC*"
     gene            1185429..1186388
                     /gene="argF"
                     /locus_tag="BSU_11250"
                     /old_locus_tag="BSU11250"
     downshifts      1186351
                     /Source="Nicolas_upshifts"
                     /id="D609"
                     /incds=0
                     /nref=141
                     /ntot=268
                     /MaxReadThrough="4.29547"
                     /MaxDrop="7.69347"
                     /score="22.2660758"
                     /energy="-11.1"
                     /TU="U899"
                     /idTUdmin="U899"
                     /TUdmin="-305"
                     /isTUend="FALSE"
     S_feature       complement(1186391..1186665)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1204423_1204697_c"
                     /HighExp="G135, G180, Cold, LBGexp, G150, B60, LoTm,
                     Paraq, Oxctl, H2O2"
                     /AntisenseName="yjzC"
                     /AntisenseCor="-0.37122740772860502"
                     /AntisenseRegPval="-9.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S399"
     promotor_-35    1186416..1186422
                     /Source="Nicolas_upshift_promotors"
                     /id="U901"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=943
                     /SigmaFactorBS="agcagtttttttgatggcAACATATtcacagccgcttagGCG
                     CATACTACAgcaaaaaggaaaaggaggaaaaacagtgggacagcagcaccaattccgg
                     c"
                     /listShort="yjzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      complement(1186424)
                     /Source="Nicolas_upshifts"
                     /id="D610"
                     /incds=0
                     /nref=33
                     /ntot=166
                     /MaxReadThrough="1.19008"
                     /MaxDrop="5.22155"
                     /score="16.2777759"
                     /energy="-11.2"
                     /TU="NA"
                     /idTUdmin="U902"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    1186437..1186448
                     /Source="Nicolas_upshift_promotors"
                     /id="U901"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=943
                     /SigmaFactorBS="agcagtttttttgatggcAACATATtcacagccgcttagGCG
                     CATACTACAgcaaaaaggaaaaggaggaaaaacagtgggacagcagcaccaattccgg
                     c"
                     /listShort="yjzC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1186458
                     /Source="Nicolas_upshifts"
                     /id="U901"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=943
                     /SigmaFactorBS="agcagtttttttgatggcAACATATtcacagccgcttagGCG
                     CATACTACAgcaaaaaggaaaaggaggaaaaacagtgggacagcagcaccaattccgg
                     c"
                     /listShort="yjzC"
                     /GFF_Attribute="listLong"
     CDS             1186474..1186653
                     /gene="yjzC"
                     /locus_tag="BSU_11260"
                     /old_locus_tag="BSU11260"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 25859258"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389008.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11260"
                     /db_xref="EnsemblGenomes-Tr:CAB12967"
                     /db_xref="InterPro:IPR025549"
                     /db_xref="SubtiList:BG13223"
                     /db_xref="UniProtKB/Swiss-Prot:O34585"
                     /translation="MGQQHQFRPGQKAPNNGVYVEIGETGSMVKNPQKVHLSAGEMFP
                     ETSNHNRLWTYKRKP*"
     gene            1186474..1186653
                     /gene="yjzC"
                     /locus_tag="BSU_11260"
                     /old_locus_tag="BSU11260"
     downshifts      1186663
                     /Source="Nicolas_upshifts"
                     /id="D611"
                     /incds=0
                     /nref=19
                     /ntot=53
                     /MaxReadThrough="0.25116"
                     /MaxDrop="5.67653"
                     /score="4.8153862"
                     /energy="-10.9"
                     /TU="NA"
                     /idTUdmin="U899"
                     /TUdmin=7
                     /isTUend="TRUE"
     CDS             complement(1186699..1186884)
                     /gene="yjzD"
                     /locus_tag="BSU_11270"
                     /old_locus_tag="BSU11270"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:19775244"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19775244; Product type f:
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="forespore targeted protein"
                     /protein_id="NP_389009.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11270"
                     /db_xref="EnsemblGenomes-Tr:CAB12968"
                     /db_xref="GOA:O34713"
                     /db_xref="InterPro:IPR021324"
                     /db_xref="SubtiList:BG13224"
                     /db_xref="UniProtKB/Swiss-Prot:O34713"
                     /translation="MRYIIAFIWTFLLSHMACYLVASMNSVTYNFKTSSVIAVVLYVL
                     IMVLAEIMPMNKNASQH*"
     gene            complement(1186699..1186884)
                     /gene="yjzD"
                     /locus_tag="BSU_11270"
                     /old_locus_tag="BSU11270"
     downshifts      complement(1186710)
                     /Source="Nicolas_upshifts"
                     /id="D612"
                     /incds=0
                     /nref=215
                     /ntot=261
                     /MaxReadThrough="3.91391"
                     /MaxDrop="6.26103"
                     /score="9.62656276"
                     /energy="-10.9"
                     /TU="U902"
                     /idTUdmin="U902"
                     /TUdmin="-286"
                     /isTUend="FALSE"
     promotor_-10    complement(1186913..1186932)
                     /Source="Nicolas_upshift_promotors"
                     /id="U902"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.94005994005994"
                     /psig=1
                     /xcortree=3093
                     /SigmaFactorBS="atcagactcttttgtcacctcactttctgctaaaattggaTT
                     CCCCCTtcgctttttgTATGGTATGATAACTTTTAGaatagaatgagaaggacgaggt
                     g"
                     /listShort="yjzD, S399"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1186930)
                     /Source="Nicolas_upshifts"
                     /id="U902"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.94005994005994"
                     /psig=1
                     /xcortree=3093
                     /SigmaFactorBS="atcagactcttttgtcacctcactttctgctaaaattggaTT
                     CCCCCTtcgctttttgTATGGTATGATAACTTTTAGaatagaatgagaaggacgaggt
                     g"
                     /listShort="yjzD, S399"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1186943..1186950)
                     /Source="Nicolas_upshift_promotors"
                     /id="U902"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.94005994005994"
                     /psig=1
                     /xcortree=3093
                     /SigmaFactorBS="atcagactcttttgtcacctcactttctgctaaaattggaTT
                     CCCCCTtcgctttttgTATGGTATGATAACTTTTAGaatagaatgagaaggacgaggt
                     g"
                     /listShort="yjzD, S399"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1186985..1186991
                     /Source="Nicolas_upshift_promotors"
                     /id="U903"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.972027972027972"
                     /psig=1
                     /xcortree=3055
                     /SigmaFactorBS="gaatccaattttagcagaaagtgaggtgacaaaagagTCTGA
                     TTcgtcacactttAATGGTAAAATATAAAACGTcaatcagtataatagccaaaaatgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1187003..1187022
                     /Source="Nicolas_upshift_promotors"
                     /id="U903"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.972027972027972"
                     /psig=1
                     /xcortree=3055
                     /SigmaFactorBS="gaatccaattttagcagaaagtgaggtgacaaaagagTCTGA
                     TTcgtcacactttAATGGTAAAATATAAAACGTcaatcagtataatagccaaaaatgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1187008
                     /Source="Nicolas_upshifts"
                     /id="U903"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.972027972027972"
                     /psig=1
                     /xcortree=3055
                     /SigmaFactorBS="gaatccaattttagcagaaagtgaggtgacaaaagagTCTGA
                     TTcgtcacactttAATGGTAAAATATAAAACGTcaatcagtataatagccaaaaatgt
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    1187065..1187074
                     /Source="Nicolas_upshift_promotors"
                     /id="U904"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.956043956043956"
                     /psig="0.956043956043956"
                     /xcortree=1435
                     /SigmaFactorBS="ataaaacgtcaatcagtataatagccaaaaatgtaaaaggct
                     aggactttaCCTTATTCGTttcttttctattTACATAAGATAGCGTGAGATgaagtgt
                     g"
                     /listShort="yjaU, yjaV, med"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1187074
                     /Source="Nicolas_upshifts"
                     /id="U904"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.956043956043956"
                     /psig="0.956043956043956"
                     /xcortree=1435
                     /SigmaFactorBS="ataaaacgtcaatcagtataatagccaaaaatgtaaaaggct
                     aggactttaCCTTATTCGTttcttttctattTACATAAGATAGCGTGAGATgaagtgt
                     g"
                     /listShort="yjaU, yjaV, med"
                     /GFF_Attribute="listLong"
     promotor_-10    1187087..1187106
                     /Source="Nicolas_upshift_promotors"
                     /id="U904"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.956043956043956"
                     /psig="0.956043956043956"
                     /xcortree=1435
                     /SigmaFactorBS="ataaaacgtcaatcagtataatagccaaaaatgtaaaaggct
                     aggactttaCCTTATTCGTttcttttctattTACATAAGATAGCGTGAGATgaagtgt
                     g"
                     /listShort="yjaU, yjaV, med"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1187133..1187867
                     /gene="yjaU"
                     /locus_tag="BSU_11280"
                     /old_locus_tag="BSU11280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 18582593"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389010.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11280"
                     /db_xref="EnsemblGenomes-Tr:CAB12969"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG13124"
                     /db_xref="UniProtKB/Swiss-Prot:O35001"
                     /translation="MGITERYFQLGTEHNVIHLPYRPNGFGIFILGDRTHFVGHDSSF
                     WQQHYGRNQLLSMLMNEGYTLFNSNLFGRHWGAEKAVTYAKQLIHSVLKQEILNPKIH
                     ILAEGMGALVADELLRFSPDHIRSAAMLNPCLDLQAHYESEKENKFFYKQFLKEVSKS
                     YGISEKEAEAIRYKTIQSYPSGVPVHIWQRMTGAPYPYSVHAEVFKEKQQKQGSPVDM
                     TFHLFEHPSRIYASICKFFHSHEKEL*"
     gene            1187133..1187867
                     /gene="yjaU"
                     /locus_tag="BSU_11280"
                     /old_locus_tag="BSU11280"
     S_feature       complement(1187626..1188228)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1205658_1206260_c"
                     /HighExp="S8, S6, S7, C30, BT, S4, S5, Pyr, S3, C90"
                     /AntisenseName="yjaV"
                     /AntisenseCor="0.66207512383157796"
                     /AntisenseRegPval="-34.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-"
                     /TUshortPSig="0.468"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S400"
     promotor_-35    1187848..1187853
                     /Source="Nicolas_upshift_promotors"
                     /id="U905"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1036
                     /SigmaFactorBS="atccaagcagaatttatgcatcaatttgcaaattctttcata
                     GTCATGaaaaagaattatagaGAATATAATGACAACAGCCttctcttttgcggaggct
                     g"
                     /listShort="yjaV, med, comZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1187866
                     /Source="Nicolas_upshifts"
                     /id="D613"
                     /incds=0
                     /nref=6
                     /ntot=47
                     /MaxReadThrough="5.56163"
                     /MaxDrop="4.5381"
                     /score="1.90624641"
                     /energy="-10"
                     /TU="U904,U905"
                     /idTUdmin="U904"
                     /TUdmin="-945"
                     /isTUend="FALSE"
     upshifts        1187866
                     /Source="Nicolas_upshifts"
                     /id="U905"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1036
                     /SigmaFactorBS="atccaagcagaatttatgcatcaatttgcaaattctttcata
                     GTCATGaaaaagaattatagaGAATATAATGACAACAGCCttctcttttgcggaggct
                     g"
                     /listShort="yjaV, med, comZ"
                     /GFF_Attribute="listLong"
     promotor_-10    1187869..1187887
                     /Source="Nicolas_upshift_promotors"
                     /id="U905"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1036
                     /SigmaFactorBS="atccaagcagaatttatgcatcaatttgcaaattctttcata
                     GTCATGaaaaagaattatagaGAATATAATGACAACAGCCttctcttttgcggaggct
                     g"
                     /listShort="yjaV, med, comZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1187949..1188506
                     /gene="yjaV"
                     /locus_tag="BSU_11290"
                     /old_locus_tag="BSU11290"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14523133; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative NAD(P) binding enzyme"
                     /protein_id="NP_389011.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11290"
                     /db_xref="EnsemblGenomes-Tr:CAB12970"
                     /db_xref="SubtiList:BG13125"
                     /db_xref="UniProtKB/Swiss-Prot:O34959"
                     /translation="MESTLIVGADEFFGLSLCERMMDEGIHVDVVLAETEDKMRQMYL
                     EERLMWLGRNELFRQLEHIGDQNYDTICIQFGSFLPLDQYDSPYILVYEEDRKEWDKR
                     EKTGSEKTVILPKMYGPWKEETEEDGYYTNDVADELLRFLLEPSRHSKDQLFELQVTE
                     KTSKEEAKTKIIEWKRQFSSIFDKY*"
     gene            1187949..1188506
                     /gene="yjaV"
                     /locus_tag="BSU_11290"
                     /old_locus_tag="BSU11290"
     promotor_-10    complement(1188208..1188227)
                     /Source="Nicolas_upshift_promotors"
                     /id="U906"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="Sig-"
                     /pcomp="0.467532467532468"
                     /psig="0.467532467532468"
                     /xcortree=771
                     /SigmaFactorBS="gcaggatcacggttttttccgagcctgttttttcacgtttat
                     CCCATtcttttcggtcttcTTCATATACTAAAATATAAGgagaatcatattggtctaa
                     a"
                     /listShort="S400"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1188228)
                     /Source="Nicolas_upshifts"
                     /id="U906"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="Sig-"
                     /pcomp="0.467532467532468"
                     /psig="0.467532467532468"
                     /xcortree=771
                     /SigmaFactorBS="gcaggatcacggttttttccgagcctgttttttcacgtttat
                     CCCATtcttttcggtcttcTTCATATACTAAAATATAAGgagaatcatattggtctaa
                     a"
                     /listShort="S400"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1188242..1188246)
                     /Source="Nicolas_upshift_promotors"
                     /id="U906"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="Sig-"
                     /pcomp="0.467532467532468"
                     /psig="0.467532467532468"
                     /xcortree=771
                     /SigmaFactorBS="gcaggatcacggttttttccgagcctgttttttcacgtttat
                     CCCATtcttttcggtcttcTTCATATACTAAAATATAAGgagaatcatattggtctaa
                     a"
                     /listShort="S400"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1188513..1188520
                     /Source="Nicolas_upshift_promotors"
                     /id="U907"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.689310689310689"
                     /psig=1
                     /xcortree=2121
                     /SigmaFactorBS="caattttcgacaaatattaagaaaaaCCTTCCATgtttcgag
                     ttttctAGATACAATAAACGTATAAAaataatacatgttatagcttgtcaaaaggagt
                     t"
                     /listShort="med, comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="promotor_-35"
     promotor_-10    1188535..1188554
                     /Source="Nicolas_upshift_promotors"
                     /id="U907"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.689310689310689"
                     /psig=1
                     /xcortree=2121
                     /SigmaFactorBS="caattttcgacaaatattaagaaaaaCCTTCCATgtttcgag
                     ttttctAGATACAATAAACGTATAAAaataatacatgttatagcttgtcaaaaggagt
                     t"
                     /listShort="med, comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="promotor_-10"
     upshifts        1188547
                     /Source="Nicolas_upshifts"
                     /id="U907"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.689310689310689"
                     /psig=1
                     /xcortree=2121
                     /SigmaFactorBS="caattttcgacaaatattaagaaaaaCCTTCCATgtttcgag
                     ttttctAGATACAATAAACGTATAAAaataatacatgttatagcttgtcaaaaggagt
                     t"
                     /listShort="med, comZ, S401"
                     /listLong="fabHA, fabF"
     CDS             1188597..1189550
                     /gene="med"
                     /locus_tag="BSU_11300"
                     /old_locus_tag="BSU11300"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:1203607, 21622736, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1203607, 21622736,
                     22720735; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="positive regulator of comK"
                     /protein_id="NP_389012.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11300"
                     /db_xref="EnsemblGenomes-Tr:CAB12971"
                     /db_xref="GOA:O32436"
                     /db_xref="InterPro:IPR003760"
                     /db_xref="InterPro:IPR028082"
                     /db_xref="SubtiList:BG13126"
                     /db_xref="UniProtKB/Swiss-Prot:O32436"
                     /translation="MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWG
                     TKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIEDFHKRGVNLLYGHGSEYAEVFNL
                     VGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
                     PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVP
                     VIQQIKKDGLYAIGYVTDQSDLGENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYY
                     DLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE*"
     gene            1188597..1189550
                     /gene="med"
                     /locus_tag="BSU_11300"
                     /old_locus_tag="BSU11300"
     promotor_-35    1189214..1189218
                     /Source="Nicolas_upshift_promotors"
                     /id="U908"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig=1
                     /xcortree=1825
                     /SigmaFactorBS="tcagaaaatgaagaacgaaggcgcggaTGTTGtgtatcccgc
                     cggagACGGGTATAATGTTCCTGTTattcagcaaatcaaaaaagacggtctttatgcc
                     a"
                     /listShort="comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="promotor_-35"
     promotor_-10    1189234..1189253
                     /Source="Nicolas_upshift_promotors"
                     /id="U908"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig=1
                     /xcortree=1825
                     /SigmaFactorBS="tcagaaaatgaagaacgaaggcgcggaTGTTGtgtatcccgc
                     cggagACGGGTATAATGTTCCTGTTattcagcaaatcaaaaaagacggtctttatgcc
                     a"
                     /listShort="comZ, S401"
                     /listLong="fabHA, fabF"
                     /label="promotor_-10"
     upshifts        1189247
                     /Source="Nicolas_upshifts"
                     /id="U908"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.924075924075924"
                     /psig=1
                     /xcortree=1825
                     /SigmaFactorBS="tcagaaaatgaagaacgaaggcgcggaTGTTGtgtatcccgc
                     cggagACGGGTATAATGTTCCTGTTattcagcaaatcaaaaaagacggtctttatgcc
                     a"
                     /listShort="comZ, S401"
                     /listLong="fabHA, fabF"
     CDS             1189565..1189756
                     /gene="comZ"
                     /locus_tag="BSU_11310"
                     /old_locus_tag="BSU11310"
                     /function="16.5: Explore"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 10940045; Product type
                     f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative late competence gene"
                     /protein_id="NP_389013.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11310"
                     /db_xref="EnsemblGenomes-Tr:CAB12972"
                     /db_xref="GOA:O32437"
                     /db_xref="InterPro:IPR024558"
                     /db_xref="SubtiList:BG13221"
                     /db_xref="UniProtKB/Swiss-Prot:O32437"
                     /translation="MQHEKSLEFLQIAMKYLPEAKEQLEKSGIELSMEAIQPFMNLFT
                     TVMAEAYELGKSDAKSETE*"
     gene            1189565..1189756
                     /gene="comZ"
                     /locus_tag="BSU_11310"
                     /old_locus_tag="BSU11310"
     downshifts      1189735
                     /Source="Nicolas_upshifts"
                     /id="D614"
                     /incds=0
                     /nref=32
                     /ntot=192
                     /MaxReadThrough="4.56858"
                     /MaxDrop="3.45953"
                     /score="-7.49795364"
                     /energy="-10.4"
                     /TU="U907,U908"
                     /idTUdmin="U905"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       1189780..1190120
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1207812_1208152"
                     /HighExp="H2O2, C30, G135, Paraq, G180, G150, Oxctl, Cold,
                     dia15, LPh"
                     /AntisenseName="yjzB"
                     /AntisenseCor="-0.34349942363230701"
                     /AntisenseRegPval="-8.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S401"
     CDS             complement(1189786..1190025)
                     /gene="yjzB"
                     /locus_tag="BSU_11320"
                     /old_locus_tag="BSU11320"
                     /experiment="publication(s) with functional evidences,
                     PMID:16391061, 22171814, 27227299"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16391061, 22171814,
                     27227299; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein"
                     /protein_id="NP_389014.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11320"
                     /db_xref="EnsemblGenomes-Tr:CAB12973"
                     /db_xref="SubtiList:BG13222"
                     /db_xref="UniProtKB/Swiss-Prot:O34891"
                     /translation="MQLDVFSRMMFGDAAKPTEEKEEEQQEEVSQVSQTNDEETINYM
                     HIMDQIGSIMNSLDQIKPALKELAPMLSAIKKKIM*"
     gene            complement(1189786..1190025)
                     /gene="yjzB"
                     /locus_tag="BSU_11320"
                     /old_locus_tag="BSU11320"
     downshifts      complement(1189802)
                     /Source="Nicolas_upshifts"
                     /id="D615"
                     /incds=0
                     /nref=21
                     /ntot=48
                     /MaxReadThrough="1.43519"
                     /MaxDrop="5.47891"
                     /score="-7.75082002"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U909"
                     /TUdmin="-13"
                     /isTUend="TRUE"
     promotor_-10    complement(1190038..1190057)
                     /Source="Nicolas_upshift_promotors"
                     /id="U909"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1358
                     /SigmaFactorBS="ctaattctatcctattttttttcacatggcaatatattcGTC
                     TAAACTAtcagttcatcttaCTCATAGAGTATGGTATATGgaaaggaggcgtatgcag
                     t"
                     /listShort="yjzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1190059)
                     /Source="Nicolas_upshifts"
                     /id="U909"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1358
                     /SigmaFactorBS="ctaattctatcctattttttttcacatggcaatatattcGTC
                     TAAACTAtcagttcatcttaCTCATAGAGTATGGTATATGgaaaggaggcgtatgcag
                     t"
                     /listShort="yjzB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1190071..1190080)
                     /Source="Nicolas_upshift_promotors"
                     /id="U909"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1358
                     /SigmaFactorBS="ctaattctatcctattttttttcacatggcaatatattcGTC
                     TAAACTAtcagttcatcttaCTCATAGAGTATGGTATATGgaaaggaggcgtatgcag
                     t"
                     /listShort="yjzB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1190086..1190093
                     /Source="Nicolas_upshift_promotors"
                     /id="U910"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.858141858141858"
                     /psig=1
                     /xcortree=2188
                     /SigmaFactorBS="atgaactgatagtttagacgaataTATTGCCAtgtgaaaaaa
                     aataGGATAGAATTAGTACCTGATactaataattgatcacaacctgattgatcttcta
                     a"
                     /listShort="fabHA, fabF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1190108..1190127
                     /Source="Nicolas_upshift_promotors"
                     /id="U910"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.858141858141858"
                     /psig=1
                     /xcortree=2188
                     /SigmaFactorBS="atgaactgatagtttagacgaataTATTGCCAtgtgaaaaaa
                     aataGGATAGAATTAGTACCTGATactaataattgatcacaacctgattgatcttcta
                     a"
                     /listShort="fabHA, fabF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1190122
                     /Source="Nicolas_upshifts"
                     /id="U910"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.858141858141858"
                     /psig=1
                     /xcortree=2188
                     /SigmaFactorBS="atgaactgatagtttagacgaataTATTGCCAtgtgaaaaaa
                     aataGGATAGAATTAGTACCTGATactaataattgatcacaacctgattgatcttcta
                     a"
                     /listShort="fabHA, fabF"
                     /GFF_Attribute="listLong"
     CDS             1190190..1191128
                     /gene="fabHA"
                     /locus_tag="BSU_11330"
                     /old_locus_tag="BSU11330"
                     /EC_number="2.3.1.180"
                     /EC_number="2.3.1.38"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10629181, 11959561, 21542858, 25196128"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10629181, 11959561,
                     21542858, 25196128; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-acyl carrier protein synthase III
                     1"
                     /protein_id="NP_389015.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11330"
                     /db_xref="EnsemblGenomes-Tr:CAB12974"
                     /db_xref="GOA:O34746"
                     /db_xref="InterPro:IPR004655"
                     /db_xref="InterPro:IPR013747"
                     /db_xref="InterPro:IPR013751"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="SubtiList:BG13127"
                     /db_xref="UniProtKB/Swiss-Prot:O34746"
                     /translation="MKAGILGVGRYIPEKVLTNHDLEKMVETSDEWIRTRTGIEERRI
                     AADDVFSSHMAVAAAKNALEQAEVAAEDLDMILVATVTPDQSFPTVSCMIQEQLGAKK
                     ACAMDISAACAGFMYGVVTGKQFIESGTYKHVLVVGVEKLSSITDWEDRNTAVLFGDG
                     AGAAVVGPVSDDRGILSFELGADGTGGQHLYLNEKRHTIMNGREVFKFAVRQMGESCV
                     NVIEKAGLSKEDVDFLIPHQANIRIMEAARERLELPVEKMSKTVHKYGNTSAASIPIS
                     LVEELEAGKIKDGDVVVMVGFGGGLTWGAIAIRWGR*"
     gene            1190190..1191128
                     /gene="fabHA"
                     /locus_tag="BSU_11330"
                     /old_locus_tag="BSU11330"
     promotor_-35    1190267..1190276
                     /Source="Nicolas_upshift_promotors"
                     /id="U911"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.978021978021978"
                     /psig="0.978021978021978"
                     /xcortree=1791
                     /SigmaFactorBS="tcctgagaaggttttaacaaatcatgatcttgaaaaaatggt
                     TGAAACTTCTgacgagtggatTCGTACAAGAACAGGAatagaagaaagaagaatcgca
                     g"
                     /listShort="fabF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1190285
                     /Source="Nicolas_upshifts"
                     /id="U911"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.978021978021978"
                     /psig="0.978021978021978"
                     /xcortree=1791
                     /SigmaFactorBS="tcctgagaaggttttaacaaatcatgatcttgaaaaaatggt
                     TGAAACTTCTgacgagtggatTCGTACAAGAACAGGAatagaagaaagaagaatcgca
                     g"
                     /listShort="fabF"
                     /GFF_Attribute="listLong"
     promotor_-10    1190288..1190303
                     /Source="Nicolas_upshift_promotors"
                     /id="U911"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp="0.978021978021978"
                     /psig="0.978021978021978"
                     /xcortree=1791
                     /SigmaFactorBS="tcctgagaaggttttaacaaatcatgatcttgaaaaaatggt
                     TGAAACTTCTgacgagtggatTCGTACAAGAACAGGAatagaagaaagaagaatcgca
                     g"
                     /listShort="fabF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1191151..1192392
                     /gene="fabF"
                     /locus_tag="BSU_11340"
                     /old_locus_tag="BSU11340"
                     /EC_number="2.3.1.41"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11325930, 12682299, 16436705, 18384517, 21542858,
                     28196402"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11325930, 12682299,
                     16436705, 18384517, 21542858, 28196402; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-acyl carrier protein synthase II
                     (involved in pimelate synthesis)"
                     /protein_id="NP_389016.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11340"
                     /db_xref="EnsemblGenomes-Tr:CAB12975"
                     /db_xref="GOA:O34340"
                     /db_xref="InterPro:IPR014030"
                     /db_xref="InterPro:IPR014031"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="InterPro:IPR017568"
                     /db_xref="InterPro:IPR018201"
                     /db_xref="InterPro:IPR020841"
                     /db_xref="PDB:4LS5"
                     /db_xref="PDB:4LS6"
                     /db_xref="PDB:4LS7"
                     /db_xref="PDB:4LS8"
                     /db_xref="SubtiList:BG13128"
                     /db_xref="UniProtKB/Swiss-Prot:O34340"
                     /translation="MTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAE
                     EYPAKVAAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDEIAPRVG
                     VWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCT
                     VTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALSTNPDPKTA
                     SRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDG
                     EGGARAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSST
                     KSMTGHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARRQELNYV
                     LSNSLGFGGHNATLIFKKYQS*"
     gene            1191151..1192392
                     /gene="fabF"
                     /locus_tag="BSU_11340"
                     /old_locus_tag="BSU11340"
     promotor_-10    complement(1191365..1191383)
                     /Source="Nicolas_upshift_promotors"
                     /id="U912"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.813186813186813"
                     /psig="0.813186813186813"
                     /xcortree=777
                     /SigmaFactorBS="cggtaatgttaagatctgcatcttcaaccGCCATTttcgcag
                     ccacaaccGCATATTGTGTAAAGCGGTccatttttctggcttcttttttatccatata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1191373)
                     /Source="Nicolas_upshifts"
                     /id="U912"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.813186813186813"
                     /psig="0.813186813186813"
                     /xcortree=777
                     /SigmaFactorBS="cggtaatgttaagatctgcatcttcaaccGCCATTttcgcag
                     ccacaaccGCATATTGTGTAAAGCGGTccatttttctggcttcttttttatccatata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1191399..1191404)
                     /Source="Nicolas_upshift_promotors"
                     /id="U912"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.813186813186813"
                     /psig="0.813186813186813"
                     /xcortree=777
                     /SigmaFactorBS="cggtaatgttaagatctgcatcttcaaccGCCATTttcgcag
                     ccacaaccGCATATTGTGTAAAGCGGTccatttttctggcttcttttttatccatata
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1192243
                     /Source="Nicolas_upshifts"
                     /id="D616"
                     /incds=1
                     /nref=1
                     /ntot=89
                     /MaxReadThrough="7.03006"
                     /MaxDrop="2.1101"
                     /score="54.6350161"
                     /energy="-18.5"
                     /TU="U910,U911"
                     /idTUdmin="U911"
                     /TUdmin="-132"
                     /isTUend="FALSE"
     downshifts      1192376
                     /Source="Nicolas_upshifts"
                     /id="D617"
                     /incds=0
                     /nref=246
                     /ntot=274
                     /MaxReadThrough="0.58964"
                     /MaxDrop="7.80446"
                     /score="54.6350161"
                     /energy="-18.5"
                     /TU="NA"
                     /idTUdmin="U911"
                     /TUdmin=1
                     /isTUend="TRUE"
     promotor_-35    1192417..1192426
                     /Source="Nicolas_upshift_promotors"
                     /id="U913"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1338
                     /SigmaFactorBS="tatcaatcataatcaagccaaaccggctgcccttaaAGGGTA
                     GCCGgttttttttgtgTGCATAGGATTAAAAGAGGAggcgatcacatgagtgtagaac
                     a"
                     /listShort="yjaZ, S402, S403, appD, appF"
                     /listLong="S404, appA, appA, appB, appC"
                     /label="promotor_-35"
     promotor_-10    1192439..1192458
                     /Source="Nicolas_upshift_promotors"
                     /id="U913"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1338
                     /SigmaFactorBS="tatcaatcataatcaagccaaaccggctgcccttaaAGGGTA
                     GCCGgttttttttgtgTGCATAGGATTAAAAGAGGAggcgatcacatgagtgtagaac
                     a"
                     /listShort="yjaZ, S402, S403, appD, appF"
                     /listLong="S404, appA, appA, appB, appC"
                     /label="promotor_-10"
     upshifts        1192441
                     /Source="Nicolas_upshifts"
                     /id="U913"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1338
                     /SigmaFactorBS="tatcaatcataatcaagccaaaccggctgcccttaaAGGGTA
                     GCCGgttttttttgtgTGCATAGGATTAAAAGAGGAggcgatcacatgagtgtagaac
                     a"
                     /listShort="yjaZ, S402, S403, appD, appF"
                     /listLong="S404, appA, appA, appB, appC"
     promotor_-35    1192453..1192461
                     /Source="Nicolas_upshift_promotors"
                     /id="U914"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=544
                     /SigmaFactorBS="cggttttttttgtgtgcataggattaaaAGAGGAGGCgatca
                     catgagTGTAGAACAAACATATAGCtggctcaggaaggccggttcaatagatgatttg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1192468..1193253
                     /gene="yjaZ"
                     /locus_tag="BSU_11350"
                     /old_locus_tag="BSU11350"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389017.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11350"
                     /db_xref="EnsemblGenomes-Tr:CAB12992"
                     /db_xref="InterPro:IPR018728"
                     /db_xref="SubtiList:BG13129"
                     /db_xref="UniProtKB/Swiss-Prot:O31596"
                     /translation="MSVEQTYSWLRKAGSIDDLAHYIIPLFSGAEKKNWKGILGHLQH
                     HGMFKNIKEGIQTVSKLKEKGFYGHIQKEEQYLKNKWQGPDVPIVTLPVDERNRRIRL
                     EFGSKSGLAFQDKMFLFLSSDLDFGSVSALMTHEYHHVCRLGHLTKEEKDVTLLDTII
                     MEGLAEYAVYERFGRSQTAEWTTWYTPEQLQALYEKKIAPHRDIKRDNRLFPQLLFGK
                     GYQPKMLGYAVGFNIVKKYLTASKASTADGLSIPAETFLDAML*"
     gene            1192468..1193253
                     /gene="yjaZ"
                     /locus_tag="BSU_11350"
                     /old_locus_tag="BSU11350"
     promotor_-10    1192473..1192491
                     /Source="Nicolas_upshift_promotors"
                     /id="U914"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=544
                     /SigmaFactorBS="cggttttttttgtgtgcataggattaaaAGAGGAGGCgatca
                     catgagTGTAGAACAAACATATAGCtggctcaggaaggccggttcaatagatgatttg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1192485
                     /Source="Nicolas_upshifts"
                     /id="U914"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=544
                     /SigmaFactorBS="cggttttttttgtgtgcataggattaaaAGAGGAGGCgatca
                     catgagTGTAGAACAAACATATAGCtggctcaggaaggccggttcaatagatgatttg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     S_feature       1193254..1193338
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1211286_1211370"
                     /HighExp="S6, S5, S8, S7, BT, S4, S3, B36, T5.0H, T4.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S402"
     promotor_-10    complement(1193270..1193288)
                     /Source="Nicolas_upshift_promotors"
                     /id="U915"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.838161838161838"
                     /psig="0.838161838161838"
                     /xcortree=1001
                     /SigmaFactorBS="tttatagttgtatattattacaatcattttgcaaaatcaAGA
                     ATTttttaggataaatgTAATATTATTAATGAAATTccattattttatccttttaaag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1193287)
                     /Source="Nicolas_upshifts"
                     /id="U915"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.838161838161838"
                     /psig="0.838161838161838"
                     /xcortree=1001
                     /SigmaFactorBS="tttatagttgtatattattacaatcattttgcaaaatcaAGA
                     ATTttttaggataaatgTAATATTATTAATGAAATTccattattttatccttttaaag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1193303..1193308)
                     /Source="Nicolas_upshift_promotors"
                     /id="U915"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.838161838161838"
                     /psig="0.838161838161838"
                     /xcortree=1001
                     /SigmaFactorBS="tttatagttgtatattattacaatcattttgcaaaatcaAGA
                     ATTttttaggataaatgTAATATTATTAATGAAATTccattattttatccttttaaag
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1193306..1193313
                     /Source="Nicolas_upshift_promotors"
                     /id="U916"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig="0.999000999001"
                     /xcortree=2876
                     /SigmaFactorBS="ataatattacatttatcctaaaaaatTCTTGATTttgcaaaa
                     tgattgTAATAATATACAACTATAAAatttttcgataattcaatattatttattattt
                     c"
                     /listShort="S403, appD, appF, S404, appA, appA, appB,
                     appC, S405, yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1193328..1193347
                     /Source="Nicolas_upshift_promotors"
                     /id="U916"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig="0.999000999001"
                     /xcortree=2876
                     /SigmaFactorBS="ataatattacatttatcctaaaaaatTCTTGATTttgcaaaa
                     tgattgTAATAATATACAACTATAAAatttttcgataattcaatattatttattattt
                     c"
                     /listShort="S403, appD, appF, S404, appA, appA, appB,
                     appC, S405, yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1193340..1193444
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1211372_1211476"
                     /HighExp="LoTm, T4.0H, T3.0H, T5.0H, T3.30H, T2.30H,
                     M9-stat, S1, T2.0H, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigK"
                     /TUshortPSig="0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S403"
     upshifts        1193340
                     /Source="Nicolas_upshifts"
                     /id="U916"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.98001998001998"
                     /psig="0.999000999001"
                     /xcortree=2876
                     /SigmaFactorBS="ataatattacatttatcctaaaaaatTCTTGATTttgcaaaa
                     tgattgTAATAATATACAACTATAAAatttttcgataattcaatattatttattattt
                     c"
                     /listShort="S403, appD, appF, S404, appA, appA, appB,
                     appC, S405, yjbA"
                     /GFF_Attribute="listLong"
     CDS             1193445..1194431
                     /gene="appD"
                     /locus_tag="BSU_11360"
                     /old_locus_tag="BSU11360"
                     /EC_number="3.6.3.-"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7997159, 25755103, 26728191"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7997159, 25755103,
                     26728191; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_389018.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11360"
                     /db_xref="EnsemblGenomes-Tr:CAB12993"
                     /db_xref="GOA:P42064"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11085"
                     /db_xref="UniProtKB/Swiss-Prot:P42064"
                     /translation="MSTLLEVNNLKTYFFRKKEPIPAVDGVDFHISKGETVALVGESG
                     SGKSITSLSIMGLVQSSGGKIMDGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMT
                     SLNPVLTIGEQITEVLIYHKNMKKKEARQRAVELLQMVGFSRAEQIMKEYPHRLSGGM
                     RQRVMIAIALSCNPKLLIADEPTTALDVTIQAQVLELMKDLCQKFNTSILLITHDLGV
                     VSEAADRVIVMYCGQVVENATVDDLFLEPLHPYTEGLLTSIPVIDGEIDKLNAIKGSV
                     PTPDNLPPGCRFAPRCPKAMDKCWTNQPSLLTHKSGRTVRCFLYEEEGAEQS*"
     gene            1193445..1194431
                     /gene="appD"
                     /locus_tag="BSU_11360"
                     /old_locus_tag="BSU11360"
     CDS             1194428..1195417
                     /gene="appF"
                     /locus_tag="BSU_11370"
                     /old_locus_tag="BSU11370"
                     /EC_number="3.6.3.-"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7997159, 25755103, 26728191, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7997159, 25755103,
                     26728191, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_389019.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11370"
                     /db_xref="EnsemblGenomes-Tr:CAB12994"
                     /db_xref="GOA:P42065"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG11086"
                     /db_xref="UniProtKB/Swiss-Prot:P42065"
                     /translation="MTAANQETILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLK
                     KGETLGIVGESGCGKSTAGRTMIRLYKPTEGQILFKGQDISNLSEEKLRKSVRKNIQM
                     VFQDPFASLNPRKTLRSIIKEPFNTHNMYTMRERNEKVEELLARVGLHPSFAGRYPHE
                     FSGGQRQRIGIARALTLNPELIIADEPVSALDVSIQAQVINLMEELQEEFNLTYLFIS
                     HDLSVVRHISDRVGVMYLGKMMELTGKHELYDNPLHPYTQALLSSVPVTRKRGSVKRE
                     RIVLKGELPSPANPPKGCVFHTRCPVAKPICKEQIPEFKEAAPSHFVACHLYS*"
     gene            1194428..1195417
                     /gene="appF"
                     /locus_tag="BSU_11370"
                     /old_locus_tag="BSU11370"
     misc_feature    1195423..1195429
                     /Source="Nicolas_upshift_promotors"
                     /id="U917"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.375624375624376"
                     /psig="0.062937062937063"
                     /xcortree=2877
                     /SigmaFactorBS="ttaaagaagctgctcccagccactttgtggcttgtcaccttt
                     atagctaatgttgCCCGCACagctttgagagggggtatgcacactacataaacaacag
                     c"
                     /listShort="S404, appA, appA, appB, appC, S405, yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1195428..1195504
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1213460_1213536"
                     /HighExp="T2.0H, S1, M9-stat, T5.0H, T3.0H, T1.30H, S2,
                     M0t90, T2.30H, BT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA"
                     /TUshortPSig="0.0629, 0.999"
                     /TUlongSig="SigK"
                     /TUlongPSig=1
                     /label="S404"
     upshifts        1195428
                     /Source="Nicolas_upshifts"
                     /id="U917"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.375624375624376"
                     /psig="0.062937062937063"
                     /xcortree=2877
                     /SigmaFactorBS="ttaaagaagctgctcccagccactttgtggcttgtcaccttt
                     atagctaatgttgCCCGCACagctttgagagggggtatgcacactacataaacaacag
                     c"
                     /listShort="S404, appA, appA, appB, appC, S405, yjbA"
                     /GFF_Attribute="listLong"
     CDS             1195505..1195996
                     /gene="appAn"
                     /locus_tag="BSU_11381"
                     /old_locus_tag="BSU11381"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 15588833,
                     25355936; Product type rc: receptor"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter
                     (oligopeptide-binding lipoprotein); N-terminal part of
                     AppA"
                     /translation="MKRRKTALMMLSVLMVLAIFLSACSGSKSSNSSAKKSAGKPQQG
                     GDLVVGSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDEKLNVKLSLAESIKELDGG
                     LAYDVKIKKGVKFHDGKELTADDVVFTYSVPLSKDYKGERGSTYEMLKSVEKKAITKS
                     CLS*"
     gene            1195505..1195996
                     /gene="appAn"
                     /locus_tag="BSU_11381"
                     /old_locus_tag="BSU11381"
                     /pseudo
     CDS             1195969..1197135
                     /gene="appAc"
                     /locus_tag="BSU_11382"
                     /old_locus_tag="BSU11382"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId: 7997159,
                     15588833, 26728191; Product type lp: lipoprotein"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter
                     (oligopeptide-binding lipoprotein); C-terminal part of
                     AppA"
                     /translation="GDYEVLFKLKYKDGNFYNNALDSTAILPKHILGNVPIADLEENE
                     FNRKKPIGSGPFKFKEWKQGQYIKLEANDDYFEGRPYLDTVTYKVIPDANAAVAQLQA
                     GDINFFNVPATDYKTAEKFNNLKIVTDLALSYVYIGWNEKNELFKDKKVRQALTTALD
                     RESIVSQVLDGDGEVAYIPESPLSWNYPKDIDVPKFEYNEKKAKQMLAEAGWKDTNGD
                     GILDKDGKKFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPP
                     NWDFDAMVMGWSLSTFPDQYDIFHSSQIKKGLNYVWYKNAEADKLMKDAKSISDRKQY
                     SKEYEQIYQKIAEDQPYTFLYYPNNHMAMPENLEGYKYHPKRDLYNIEKWWLAK*"
     gene            1195969..1197135
                     /gene="appAc"
                     /locus_tag="BSU_11382"
                     /old_locus_tag="BSU11382"
                     /pseudo
     downshifts      1197126
                     /Source="Nicolas_upshifts"
                     /id="D618"
                     /incds=0
                     /nref=1
                     /ntot=49
                     /MaxReadThrough="7.71397"
                     /MaxDrop="3.11667"
                     /score="-1.00317393"
                     /energy="-13.3"
                     /TU="U916,U917"
                     /idTUdmin="U913"
                     /TUdmin=1715
                     /isTUend="FALSE"
     CDS             1197211..1198161
                     /gene="appB"
                     /locus_tag="BSU_11390"
                     /old_locus_tag="BSU11390"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7997159, 15849754, 16850406, 26728191"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7997159, 15849754,
                     16850406, 26728191; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (permease)"
                     /protein_id="NP_389021.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11390"
                     /db_xref="EnsemblGenomes-Tr:CAB12996"
                     /db_xref="GOA:P42062"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11088"
                     /db_xref="UniProtKB/Swiss-Prot:P42062"
                     /translation="MAAYIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMDPKIS
                     QADREQFIEKYGLNDPQYVQYLKWLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLL
                     MLVSTILALMISIPFGVLSAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNL
                     GWFPTGGVETLNTEFNIFDRIHHLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRT
                     ARAKGFKENRVLFKHGLRNALLPVITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDS
                     AFQRDYPVIMAMTVISAVLVVVGNLIADILYAIVDPRIEY*"
     gene            1197211..1198161
                     /gene="appB"
                     /locus_tag="BSU_11390"
                     /old_locus_tag="BSU11390"
     CDS             1198178..1199089
                     /gene="appC"
                     /locus_tag="BSU_11400"
                     /old_locus_tag="BSU11400"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7997159, 15849754, 16850406, 26728191"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7997159, 15849754,
                     16850406, 26728191; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (permease)"
                     /protein_id="NP_389022.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11400"
                     /db_xref="EnsemblGenomes-Tr:CAB12997"
                     /db_xref="GOA:P42063"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR025966"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG11089"
                     /db_xref="UniProtKB/Swiss-Prot:P42063"
                     /translation="MSELQTTPSPEIRLKENISKKPETMTKIFWEKFSKNKLAILGAV
                     ILFIIIMSAVFAPLIAPYPQEQQSLLDKYKAPGLEHLMGTDKFGRDIFSRILYGARVS
                     LLVGFASVVGSILIGTVLGALAGYFRGIVDAVIMRVVDIVLSIPDIFLLITLVTIFKP
                     GVDKLILIFCLTGWTTTARLVRGEFLSLRSREYVLAAKTIGTKTHKIIFSHILPNALG
                     PIIVSATLKVGSVILAESALSYLGFGIQPPIASWGNMLQDAQNFTVMIQAWWYPLFPG
                     LFILMTVLCFNFVGDGLRDALDPKNIK*"
     gene            1198178..1199089
                     /gene="appC"
                     /locus_tag="BSU_11400"
                     /old_locus_tag="BSU11400"
     downshifts      1199103
                     /Source="Nicolas_upshifts"
                     /id="D619"
                     /incds=0
                     /nref=62
                     /ntot=188
                     /MaxReadThrough="5.13927"
                     /MaxDrop="5.50153"
                     /score="22.0028545"
                     /energy="-11.6"
                     /TU="U916,U917"
                     /idTUdmin="U916"
                     /TUdmin="-923"
                     /isTUend="FALSE"
     S_feature       1199148..1199255
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1217180_1217287"
                     /HighExp="LoTm, S1, S2, BT, T3.30H, T4.0H, T5.0H, T3.0H,
                     Glu, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA"
                     /TUshortPSig="0.0629, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S405"
     promotor_-35    1199228..1199233
                     /Source="Nicolas_upshift_promotors"
                     /id="U918"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1160
                     /SigmaFactorBS="cccagtgattccagatttcctcaatctctttGGAATAatttc
                     tctatcccttGCCTATACTGTGGACAACAgtttttataaaagtgaggggttagagatg
                     t"
                     /listShort="yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1199249..1199267
                     /Source="Nicolas_upshift_promotors"
                     /id="U918"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1160
                     /SigmaFactorBS="cccagtgattccagatttcctcaatctctttGGAATAatttc
                     tctatcccttGCCTATACTGTGGACAACAgtttttataaaagtgaggggttagagatg
                     t"
                     /listShort="yjbA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1199257
                     /Source="Nicolas_upshifts"
                     /id="U918"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1160
                     /SigmaFactorBS="cccagtgattccagatttcctcaatctctttGGAATAatttc
                     tctatcccttGCCTATACTGTGGACAACAgtttttataaaagtgaggggttagagatg
                     t"
                     /listShort="yjbA"
                     /GFF_Attribute="listLong"
     CDS             1199294..1200046
                     /gene="yjbA"
                     /locus_tag="BSU_11410"
                     /old_locus_tag="BSU11410"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11717292, 22882546;
                     Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sporulation nucleic acid binding
                     protein"
                     /protein_id="NP_389023.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11410"
                     /db_xref="EnsemblGenomes-Tr:CAB12998"
                     /db_xref="InterPro:IPR020909"
                     /db_xref="SubtiList:BG13130"
                     /db_xref="UniProtKB/Swiss-Prot:O31597"
                     /translation="MLFLHDVWVNWFEGEENGYNVCHFHEWRKEDTVELLDQVPLLRV
                     PSVLFHYIENDLSELPKGLLEDVHQKSYIRKNHERTKLEYCFVVTDGIGILAVDTIGY
                     TIPVRKSRLIPRQEQLVYEMVKDVEPETYEFEPKKLESSKEYHILSLAPEHVRGLTRK
                     ERQIKQLMFMALDQLKGLKNRAEIGYWYTEWNPHMYEQIKRMSFEEIWDMLYNETIEG
                     WSDKHLAFCENLIKGQPFFEKLWEMENESKVN*"
     gene            1199294..1200046
                     /gene="yjbA"
                     /locus_tag="BSU_11410"
                     /old_locus_tag="BSU11410"
     downshifts      1200026
                     /Source="Nicolas_upshifts"
                     /id="D620"
                     /incds=0
                     /nref=32
                     /ntot=112
                     /MaxReadThrough="1.07428"
                     /MaxDrop="6.2264"
                     /score="22.0028545"
                     /energy="-11.6"
                     /TU="NA"
                     /idTUdmin="U916"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1200081..1201073)
                     /gene="trpS"
                     /locus_tag="BSU_11420"
                     /old_locus_tag="BSU11420"
                     /EC_number="6.1.1.2"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8950174, 10706627, 12682299, 24572018"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8950174, 10706627,
                     12682299, 24572018; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanyl-tRNA synthetase"
                     /protein_id="NP_389024.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11420"
                     /db_xref="EnsemblGenomes-Tr:CAB12999"
                     /db_xref="GOA:P21656"
                     /db_xref="InterPro:IPR001412"
                     /db_xref="InterPro:IPR002305"
                     /db_xref="InterPro:IPR002306"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR024109"
                     /db_xref="PDB:3PRH"
                     /db_xref="SubtiList:BG10799"
                     /db_xref="UniProtKB/Swiss-Prot:P21656"
                     /translation="MKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQH
                     AITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGE
                     LERMTQFKDKSKGNEAVVSGLLTYPPLMAADILLYGTDLVPVGEDQKQHLELTRNLAE
                     RFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKI
                     KSAVTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEV
                     VVNALKPIQDRYYELIESEELDRILDEGAERANRTANKMLKKMENAMGLGRKRR*"
     gene            complement(1200081..1201073)
                     /gene="trpS"
                     /locus_tag="BSU_11420"
                     /old_locus_tag="BSU11420"
     downshifts      complement(1200102)
                     /Source="Nicolas_upshifts"
                     /id="D621"
                     /incds=0
                     /nref=224
                     /ntot=255
                     /MaxReadThrough="1.77115"
                     /MaxDrop="6.72647"
                     /score="27.6275522"
                     /energy="-11.6"
                     /TU="U919"
                     /idTUdmin="U919"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     misc_RNA        complement(1201132..1201346)
                     /gene="tboWA"
                     /locus_tag="BSU_misc_RNA_13"
                     /product="T-box riboswitch specific of tryptophan tRNA"
                     /experiment="publication(s) with functional evidences,
                     PMID:8045882, 9098041, 10706627, 10943892, 11842119,
                     12165569, 12547201, 1317842"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8045882, 9098041,
                     10706627, 10943892, 11842119, 12165569, 12547201, 1317842;
                     Product type n: RNA"
                     /function="16.3: Control"
     gene            complement(1201132..1201346)
                     /gene="tboWA"
                     /locus_tag="BSU_misc_RNA_13"
     downshifts      complement(1201180)
                     /Source="Nicolas_upshifts"
                     /id="D622"
                     /incds=0
                     /nref=37
                     /ntot=127
                     /MaxReadThrough="6.8472"
                     /MaxDrop="5.13001"
                     /score="25.1445248"
                     /energy="-19"
                     /TU="U919"
                     /idTUdmin="U919"
                     /TUdmin="-1100"
                     /isTUend="FALSE"
     misc_feature    complement(1201365..1201384)
                     /Source="Nicolas_upshift_promotors"
                     /id="U919"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.99100899100899"
                     /xcortree=602
                     /SigmaFactorBS="tatttatattattacaattttactggaaaaaagaatgttttt
                     tcatgatgacaaTTGGTTATAATTGATTTATAatgaagcaatcaaaagaaaagcttgc
                     t"
                     /listShort="NA, trpS"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1201378)
                     /Source="Nicolas_upshifts"
                     /id="U919"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.509490509490509"
                     /psig="0.99100899100899"
                     /xcortree=602
                     /SigmaFactorBS="tatttatattattacaattttactggaaaaaagaatgttttt
                     tcatgatgacaaTTGGTTATAATTGATTTATAatgaagcaatcaaaagaaaagcttgc
                     t"
                     /listShort="NA, trpS"
                     /GFF_Attribute="listLong"
     promotor_-35    1201633..1201640
                     /Source="Nicolas_upshift_promotors"
                     /id="U920"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.828171828171828"
                     /psig=1
                     /xcortree=491
                     /SigmaFactorBS="aactaacgaagtttaaatattttaaattgataaaataaTATT
                     GCAAtaaattatttgtttCATTATAATGAACTTGTTCActctattgttacagcttttt
                     t"
                     /listShort="S406, oppA, S407, oppB, oppC, oppD, oppF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1201654..1201816
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1219686_1219848"
                     /HighExp="S1, T3.0H, T3.30H, T2.30H, T4.0H, T5.0H, LoTm,
                     T2.0H, M40t90, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S406"
     promotor_-10    1201655..1201674
                     /Source="Nicolas_upshift_promotors"
                     /id="U920"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.828171828171828"
                     /psig=1
                     /xcortree=491
                     /SigmaFactorBS="aactaacgaagtttaaatattttaaattgataaaataaTATT
                     GCAAtaaattatttgtttCATTATAATGAACTTGTTCActctattgttacagcttttt
                     t"
                     /listShort="S406, oppA, S407, oppB, oppC, oppD, oppF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1201655
                     /Source="Nicolas_upshifts"
                     /id="U920"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.828171828171828"
                     /psig=1
                     /xcortree=491
                     /SigmaFactorBS="aactaacgaagtttaaatattttaaattgataaaataaTATT
                     GCAAtaaattatttgtttCATTATAATGAACTTGTTCActctattgttacagcttttt
                     t"
                     /listShort="S406, oppA, S407, oppB, oppC, oppD, oppF"
                     /GFF_Attribute="listLong"
     CDS             1201817..1203454
                     /gene="oppA"
                     /locus_tag="BSU_11430"
                     /old_locus_tag="BSU11430"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 11083832, 11401703, 12823818, 15588833,
                     23133654, 26176322, 22720735, 25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 11083832,
                     11401703, 12823818, 15588833, 23133654, 26176322,
                     22720735, 25355936; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (binding
                     lipoprotein)"
                     /protein_id="NP_389025.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11430"
                     /db_xref="EnsemblGenomes-Tr:CAB13000"
                     /db_xref="GOA:P24141"
                     /db_xref="InterPro:IPR000914"
                     /db_xref="InterPro:IPR023765"
                     /db_xref="InterPro:IPR030678"
                     /db_xref="SubtiList:BG10771"
                     /db_xref="UniProtKB/Swiss-Prot:P24141"
                     /translation="MKKRWSIVTLMLIFTLVLSACGFGGSGSNGEGKKDSKGKTTLNI
                     NIKTEPFSLHPGLANDSVSGGVIRQTFEGLTRINADGEPEEGMASKIETSKDGKTYTF
                     TIRDGVKWSNGDPVTAQDFEYAWKWALDPNNESQYAYQLYYIKGAEAANTGKGSLDDV
                     AVKAVNDKTLKVELNNPTPYFTELTAFYTYMPINKKIAEKNKKWNTNAGDDYVSNGPF
                     KMTAWKHSGSITLEKNDQYWDKDKVKLKKIDMVMINNNNTELKKFQAGELDWAGMPLG
                     QLPTESLPTLKKDGSLHVEPIAGVYWYKFNTEAKPLDNVNIRKALTYSLDRQSIVKNV
                     TQGEQIPAMAAVPPTMKGFEDNKEGYFKDNDVKTAKEYLEKGLKEMGLSKASDLPKIK
                     LSYNTDDAHAKIAQAVQEMWKKNLGVDVELDNSEWNVYIDKLHSQDYQIGRMGWLGDF
                     NDPINFLELFRDKNGGNNDTGWENPEFKKLLNQSQTETDKTKRAELLKKAEGIFIDEM
                     PVAPIYFYTDTWVQDENLKGVIMPGTGEVYFRNAYFK*"
     gene            1201817..1203454
                     /gene="oppA"
                     /locus_tag="BSU_11430"
                     /old_locus_tag="BSU11430"
     downshifts      1203348
                     /Source="Nicolas_upshifts"
                     /id="D623"
                     /incds=1
                     /nref=8
                     /ntot=166
                     /MaxReadThrough="6.94127"
                     /MaxDrop="3.3677"
                     /score="-4.2761508"
                     /energy="-15.6"
                     /TU="U920"
                     /idTUdmin="U916"
                     /TUdmin=3322
                     /isTUend="FALSE"
     S_feature       1203455..1203561
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1221487_1221593"
                     /HighExp="S1, LoTm, T4.0H, BT, T3.30H, T3.0H, T5.0H,
                     M0t90, T2.30H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S407"
     CDS             1203562..1204497
                     /gene="oppB"
                     /locus_tag="BSU_11440"
                     /old_locus_tag="BSU11440"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 11401703, 15849754, 16850406, 17600541,
                     25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 11401703,
                     15849754, 16850406, 17600541, 25355936; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (permease)"
                     /protein_id="NP_389026.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11440"
                     /db_xref="EnsemblGenomes-Tr:CAB13001"
                     /db_xref="GOA:P24138"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10772"
                     /db_xref="UniProtKB/Swiss-Prot:P24138"
                     /translation="MLKYIGRRLVYMIITLFVIVTVTFFLMQAAPGGPFSGEKKLPPE
                     IEANLNAHYGLDKPLFVQYVSYLKSVAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGA
                     EAILLALALGVLFGVIAALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGL
                     FPVAGWDSWAYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSRPAVT
                     VRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGV
                     TVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKKGA*"
     gene            1203562..1204497
                     /gene="oppB"
                     /locus_tag="BSU_11440"
                     /old_locus_tag="BSU11440"
     promotor_-10    complement(1203605..1203624)
                     /Source="Nicolas_upshift_promotors"
                     /id="U921"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.508491508491508"
                     /psig="0.97902097902098"
                     /xcortree=1450
                     /SigmaFactorBS="gctttttctcacctgaaaatggcccgcccggtgctgCTTGCA
                     TtaagaagaatgtcacAGTTACAATCACAAATAGTGtgataatcatatagactaagcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1203622)
                     /Source="Nicolas_upshifts"
                     /id="U921"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.508491508491508"
                     /psig="0.97902097902098"
                     /xcortree=1450
                     /SigmaFactorBS="gctttttctcacctgaaaatggcccgcccggtgctgCTTGCA
                     TtaagaagaatgtcacAGTTACAATCACAAATAGTGtgataatcatatagactaagcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1203640..1203646)
                     /Source="Nicolas_upshift_promotors"
                     /id="U921"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.508491508491508"
                     /psig="0.97902097902098"
                     /xcortree=1450
                     /SigmaFactorBS="gctttttctcacctgaaaatggcccgcccggtgctgCTTGCA
                     TtaagaagaatgtcacAGTTACAATCACAAATAGTGtgataatcatatagactaagcg
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1204501..1205418
                     /gene="oppC"
                     /locus_tag="BSU_11450"
                     /old_locus_tag="BSU11450"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 11401703, 15849754, 16850406, 26782429"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 11401703,
                     15849754, 16850406, 26782429; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (permease)"
                     /protein_id="NP_389027.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11450"
                     /db_xref="EnsemblGenomes-Tr:CAB13002"
                     /db_xref="GOA:P24139"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR025966"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10773"
                     /db_xref="UniProtKB/Swiss-Prot:P24139"
                     /translation="MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAM
                     VGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPPSKDHWFGTDDLGRDIFVRTWVG
                     ARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
                     VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVP
                     NAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFF
                     PAGFICITMFGFNVVGDGLRDALDPKLRK*"
     gene            1204501..1205418
                     /gene="oppC"
                     /locus_tag="BSU_11450"
                     /old_locus_tag="BSU11450"
     CDS             1205423..1206499
                     /gene="oppD"
                     /locus_tag="BSU_11460"
                     /old_locus_tag="BSU11460"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 11401703, 19202088, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 11401703,
                     19202088, 22720735; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_389028.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11460"
                     /db_xref="EnsemblGenomes-Tr:CAB13003"
                     /db_xref="GOA:P24136"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10774"
                     /db_xref="UniProtKB/Swiss-Prot:P24136"
                     /translation="MIRVTRLLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVG
                     ESGSGKSVTSQAIMKLIPMPPGYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQD
                     PMTSLNPTMKVGKQITEVLFKHEKISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFS
                     GGMRQRVVIAMALAANPKLLIADEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHD
                     LGVVANVADRVAVMYAGQIVETGTVDEIFYDPRHPYTWGLLASMPTLESSGEEELTAI
                     PGTPPDLTNPPKGDAFALRSSYAMKIDFEQEPPMFKVSDTHYVKSWLLHPDAPKVEPP
                     EAVKAKMRKLANTFEKPVLVREVE*"
     gene            1205423..1206499
                     /gene="oppD"
                     /locus_tag="BSU_11460"
                     /old_locus_tag="BSU11460"
     CDS             1206501..1207418
                     /gene="oppF"
                     /locus_tag="BSU_11470"
                     /old_locus_tag="BSU11470"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1901616, 7997159, 11401703, 23133654, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1901616, 7997159,
                     11401703, 23133654, 22720735; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter (ATP-binding
                     protein)"
                     /protein_id="NP_389029.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11470"
                     /db_xref="EnsemblGenomes-Tr:CAB13004"
                     /db_xref="GOA:P24137"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10775"
                     /db_xref="UniProtKB/Swiss-Prot:P24137"
                     /translation="MTEKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGES
                     GCGKSTTGRSIIRLYEATDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNP
                     RMTVADIIAEGLDIHKLAKTKKERMQRVHELLETVGLNKEHANRYPHEFSGGQRQRIG
                     IARALAVDPEFIIADEPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYIS
                     DRIGVMYFGKLVELAPADELYENPLHPYTKSLLSAIPLPDPDYERNRVRQKYDPSVHQ
                     LKDGETMEFREVKPGHFVMCTEAEFKAFS*"
     gene            1206501..1207418
                     /gene="oppF"
                     /locus_tag="BSU_11470"
                     /old_locus_tag="BSU11470"
     downshifts      1207388
                     /Source="Nicolas_upshifts"
                     /id="D624"
                     /incds=0
                     /nref=21
                     /ntot=196
                     /MaxReadThrough="1.58906"
                     /MaxDrop="5.17491"
                     /score="28.2861081"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U920"
                     /TUdmin="-8"
                     /isTUend="TRUE"
     promotor_-35    1207468..1207471
                     /Source="Nicolas_upshift_promotors"
                     /id="U922"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig="0.97002997002997"
                     /xcortree=3166
                     /SigmaFactorBS="caatccttcaagagatttctcttgaaggatttttttgcgtct
                     tcATAGaaagtgagaatgatAACATTTACAATTAGAGGAAaaagcggaggcgaaatac
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1207484
                     /Source="Nicolas_upshifts"
                     /id="U922"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig="0.97002997002997"
                     /xcortree=3166
                     /SigmaFactorBS="caatccttcaagagatttctcttgaaggatttttttgcgtct
                     tcATAGaaagtgagaatgatAACATTTACAATTAGAGGAAaaagcggaggcgaaatac
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    1207486..1207505
                     /Source="Nicolas_upshift_promotors"
                     /id="U922"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.651348651348651"
                     /psig="0.97002997002997"
                     /xcortree=3166
                     /SigmaFactorBS="caatccttcaagagatttctcttgaaggatttttttgcgtct
                     tcATAGaaagtgagaatgatAACATTTACAATTAGAGGAAaaagcggaggcgaaatac
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1207525..1208742
                     /gene="yjbB"
                     /locus_tag="BSU_11480"
                     /old_locus_tag="BSU11480"
                     /function="16.1: Circulate"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14563878, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exporter"
                     /protein_id="NP_389030.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11480"
                     /db_xref="EnsemblGenomes-Tr:CAB13005"
                     /db_xref="GOA:O31600"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13131"
                     /db_xref="UniProtKB/Swiss-Prot:O31600"
                     /translation="MQFLHNKNVFALLLSQSFQSLAGVLVTIVLMVRIYQMTDSVFLA
                     GLILSFMSFASIAASFCVSPVLRILGFKKVLAGANLLRAVFIILMAYSVTHHGQAFFW
                     ITLLFVFCFSFAGAFFQPARFALLPIIVPKKQYVKANGVISLSNQLFLTAGWGLGGLL
                     TYAVPFELVVGAAICLFVLSGASISVLHVNEEEAAGTAETASVRSIWKDLMIIPIVRD
                     ITVMDMLEALAGSVWSSAILLAFTAAVLHETEVWWGMFNASYFIGAIVGSVIAIRFSS
                     FFERNMGYAIMFSSLVMSALTLLFSFSPVPFLCALACAAMGPFYQVRDICQETMLQEV
                     IPEQKRIGIMAAKNAILTPWSGVTYSIMGLVADAAGAKIAFIAAAALYIMTFLIALAQ
                     PRLVHYRRENRVQ*"
     gene            1207525..1208742
                     /gene="yjbB"
                     /locus_tag="BSU_11480"
                     /old_locus_tag="BSU11480"
     promotor_-35    1208795..1208804
                     /Source="Nicolas_upshift_promotors"
                     /id="U923"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=114
                     /SigmaFactorBS="cagctggctccgttttgctgaaaaaaaaaTGAAACCATGgcg
                     gaagttcgcACGTCTTTATAGATGTaaggctgtttaaacaagaagaaatggggtatat
                     c"
                     /listShort="S408, yjbC, S409, spxA, S410"
                     /listLong="S411, mecA"
                     /label="promotor_-35"
     promotor_-10    1208817..1208832
                     /Source="Nicolas_upshift_promotors"
                     /id="U923"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=114
                     /SigmaFactorBS="cagctggctccgttttgctgaaaaaaaaaTGAAACCATGgcg
                     gaagttcgcACGTCTTTATAGATGTaaggctgtttaaacaagaagaaatggggtatat
                     c"
                     /listShort="S408, yjbC, S409, spxA, S410"
                     /listLong="S411, mecA"
                     /label="promotor_-10"
     S_feature       1208826..1208905
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1226858_1226937"
                     /HighExp="Etha, B60, M9-stat, T0.30H, Salt, T3.0H, T1.0H,
                     T4.0H, T2.30H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S408"
     upshifts        1208826
                     /Source="Nicolas_upshifts"
                     /id="U923"
                     /multdbtbs="SigW,SigX"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=114
                     /SigmaFactorBS="cagctggctccgttttgctgaaaaaaaaaTGAAACCATGgcg
                     gaagttcgcACGTCTTTATAGATGTaaggctgtttaaacaagaagaaatggggtatat
                     c"
                     /listShort="S408, yjbC, S409, spxA, S410"
                     /listLong="S411, mecA"
     CDS             1208906..1209484
                     /gene="yjbC"
                     /locus_tag="BSU_11490"
                     /old_locus_tag="BSU11490"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17158660, 17158663,
                     21815947; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative thiol oxidation management factor;
                     putative acetyltransferase"
                     /protein_id="NP_389031.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11490"
                     /db_xref="EnsemblGenomes-Tr:CAB13006"
                     /db_xref="GOA:O31601"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13132"
                     /db_xref="UniProtKB/Swiss-Prot:O31601"
                     /translation="MNWYEKLSEYFPIEEMKSKAHMEALLKERSDIYHKDEGKHHILM
                     FAEFDSFIFVDYLYVSKDARGQGLGGKLIAKLKKKNKPILLEVEPVDEDDTDTEKRLR
                     FYQREHFKHAQSIGYRRRSLATNEVNKMEILYWSPKTESEEEILEAMKQTYENIHTYK
                     DEKWYGESYEKTDEVLEIIDEEKQKNIFDQLS*"
     gene            1208906..1209484
                     /gene="yjbC"
                     /locus_tag="BSU_11490"
                     /old_locus_tag="BSU11490"
     S_feature       1209485..1209599
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1227517_1227631"
                     /HighExp="B60, Etha, Salt, T0.30H, M9-stat, LoTm, Gly,
                     T1.0H, B36, Heat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S409"
     promotor_-10    complement(1209536..1209555)
                     /Source="Nicolas_upshift_promotors"
                     /id="U924"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.622377622377622"
                     /xcortree=51
                     /SigmaFactorBS="aaaaaggaatctttacaggtattaTACTATAAaaaagtaagt
                     gtgAACAGTATCCTAAGAAAAAAatgtgtcaatccagcaaatttttaatgttcatgat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1209540)
                     /Source="Nicolas_upshifts"
                     /id="U924"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.622377622377622"
                     /xcortree=51
                     /SigmaFactorBS="aaaaaggaatctttacaggtattaTACTATAAaaaagtaagt
                     gtgAACAGTATCCTAAGAAAAAAatgtgtcaatccagcaaatttttaatgttcatgat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1209569..1209576)
                     /Source="Nicolas_upshift_promotors"
                     /id="U924"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.507492507492508"
                     /psig="0.622377622377622"
                     /xcortree=51
                     /SigmaFactorBS="aaaaaggaatctttacaggtattaTACTATAAaaaagtaagt
                     gtgAACAGTATCCTAAGAAAAAAatgtgtcaatccagcaaatttttaatgttcatgat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    1209602..1209615
                     /Source="Nicolas_upshift_promotors"
                     /id="U925"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig="0.973026973026973"
                     /xcortree=1536
                     /SigmaFactorBS="cttaggatactgttcacacttacttttttatagtataatacc
                     tgtaaagattccttttttAGAGTAATTTCAATttaagaataaaatagatgttcatcct
                     a"
                     /listShort="spxA"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1209602
                     /Source="Nicolas_upshifts"
                     /id="U925"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.815184815184815"
                     /psig="0.973026973026973"
                     /xcortree=1536
                     /SigmaFactorBS="cttaggatactgttcacacttacttttttatagtataatacc
                     tgtaaagattccttttttAGAGTAATTTCAATttaagaataaaatagatgttcatcct
                     a"
                     /listShort="spxA"
                     /GFF_Attribute="listLong"
     CDS             1209665..1210060
                     /gene="spxA"
                     /locus_tag="BSU_11500"
                     /old_locus_tag="BSU11500"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:12642660, 14597697, 15659166, 16249335, 16740936,
                     18662407, 22307755, 23894131, 28484046, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12642660, 14597697,
                     15659166, 16249335, 16740936, 18662407, 22307755,
                     23894131, 28484046, 22720735; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive regulator"
                     /protein_id="NP_389032.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11500"
                     /db_xref="EnsemblGenomes-Tr:CAB13007"
                     /db_xref="GOA:O31602"
                     /db_xref="InterPro:IPR006504"
                     /db_xref="InterPro:IPR006660"
                     /db_xref="InterPro:IPR023731"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="PDB:1Z3E"
                     /db_xref="PDB:3GFK"
                     /db_xref="PDB:3IHQ"
                     /db_xref="SubtiList:BG13133"
                     /db_xref="UniProtKB/Swiss-Prot:O31602"
                     /translation="MVTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQ
                     ILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDLYRLINEHPGLLRRPIIIDEKRLQ
                     VGYNEDEIRRFLPRKVRSFQLREAQRLAN*"
     gene            1209665..1210060
                     /gene="spxA"
                     /locus_tag="BSU_11500"
                     /old_locus_tag="BSU11500"
     promotor_no_box complement(1209896..1209996)
                     /Source="Nicolas_upshift_promotors"
                     /id="U926"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig="0.000999000999001"
                     /xcortree=57
                     /SigmaFactorBS="ctgatttcgtcttcgttatatccgacctgcaaacgtttttcg
                     tcaatgatgatcggacggcgaagcaaacctggatgctcgttgatcaagcggtacaaat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(1209936)
                     /Source="Nicolas_upshifts"
                     /id="U926"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.96103896103896"
                     /psig="0.000999000999001"
                     /xcortree=57
                     /SigmaFactorBS="ctgatttcgtcttcgttatatccgacctgcaaacgtttttcg
                     tcaatgatgatcggacggcgaagcaaacctggatgctcgttgatcaagcggtacaaat
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      1210058
                     /Source="Nicolas_upshifts"
                     /id="D625"
                     /incds=0
                     /nref=263
                     /ntot=269
                     /MaxReadThrough="4.34531"
                     /MaxDrop="8.0579"
                     /score="7.42972561"
                     /energy="-8.8"
                     /TU="U923"
                     /idTUdmin="U925"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       1210103..1210892
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1228135_1228924"
                     /HighExp="B60, B36, Etha, M9-stat, Salt, H2O2, Paraq,
                     Cold, G180, G135"
                     /AntisenseName="yjbE"
                     /AntisenseCor="-0.18634010398760401"
                     /AntisenseRegPval="-2.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S410"
     CDS             complement(1210103..1210759)
                     /gene="yjbE"
                     /locus_tag="BSU_11510"
                     /old_locus_tag="BSU11510"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane protein of unknown function"
                     /protein_id="NP_389033.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11510"
                     /db_xref="EnsemblGenomes-Tr:CAB13008"
                     /db_xref="GOA:O31603"
                     /db_xref="InterPro:IPR005496"
                     /db_xref="InterPro:IPR022301"
                     /db_xref="SubtiList:BG13134"
                     /db_xref="UniProtKB/Swiss-Prot:O31603"
                     /translation="MEHDYLISLLVIVGIDLILGGDNAVVIAMASRHLPDKQRQQAII
                     LGTFIAVAMRIGLTSAAVYLLNIPFLQCAGGIFLLYLGYQLLIEKKDTKHIKSSTSLW
                     RAIRTIVLADLFMSLDNVIAVAGASHGEFSLVVIGLCVSVPVIIWGSKLIHIALEKIP
                     LLIYAGSGLLAYTGGEMIVRDKKLSLFMAQHGTVETLLPILTVAFVILASIYYQQVEK
                     *"
     gene            complement(1210103..1210759)
                     /gene="yjbE"
                     /locus_tag="BSU_11510"
                     /old_locus_tag="BSU11510"
     promotor_-10    complement(1210789..1210807)
                     /Source="Nicolas_upshift_promotors"
                     /id="U927"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=987
                     /SigmaFactorBS="cacctttgcctaaaaaacggcagatcaggcggctgatATCAT
                     AaaatatgacctgtcTCATATAGTAGTAGTACAAgcgaaggactgaaagcgaggtgcc
                     g"
                     /listShort="yjbE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1210804)
                     /Source="Nicolas_upshifts"
                     /id="U927"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=987
                     /SigmaFactorBS="cacctttgcctaaaaaacggcagatcaggcggctgatATCAT
                     AaaatatgacctgtcTCATATAGTAGTAGTACAAgcgaaggactgaaagcgaggtgcc
                     g"
                     /listShort="yjbE"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1210822..1210827)
                     /Source="Nicolas_upshift_promotors"
                     /id="U927"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=987
                     /SigmaFactorBS="cacctttgcctaaaaaacggcagatcaggcggctgatATCAT
                     AaaatatgacctgtcTCATATAGTAGTAGTACAAgcgaaggactgaaagcgaggtgcc
                     g"
                     /listShort="yjbE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1210865..1210872
                     /Source="Nicolas_upshift_promotors"
                     /id="U928"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.845154845154845"
                     /psig="0.998001998001998"
                     /xcortree=622
                     /SigmaFactorBS="cgcctgatctgccgttttttaggcaaaggtgCATTTTTAttt
                     cttttgtgacTGTTTTATCATAAAATAGAAatacaaaggaattcacactggccttggt
                     t"
                     /listShort="S411, mecA, S412, S413, coiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1210886..1210905
                     /Source="Nicolas_upshift_promotors"
                     /id="U928"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.845154845154845"
                     /psig="0.998001998001998"
                     /xcortree=622
                     /SigmaFactorBS="cgcctgatctgccgttttttaggcaaaggtgCATTTTTAttt
                     cttttgtgacTGTTTTATCATAAAATAGAAatacaaaggaattcacactggccttggt
                     t"
                     /listShort="S411, mecA, S412, S413, coiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1210894..1211035
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1228926_1229067"
                     /HighExp="B60, Diami, Etha, dia5, LPhT, M9-stat, T5.0H,
                     T3.0H, dia15, T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="SigWXY"
                     /TUlongPSig=1
                     /label="S411"
     upshifts        1210894
                     /Source="Nicolas_upshifts"
                     /id="U928"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.845154845154845"
                     /psig="0.998001998001998"
                     /xcortree=622
                     /SigmaFactorBS="cgcctgatctgccgttttttaggcaaaggtgCATTTTTAttt
                     cttttgtgacTGTTTTATCATAAAATAGAAatacaaaggaattcacactggccttggt
                     t"
                     /listShort="S411, mecA, S412, S413, coiA"
                     /GFF_Attribute="listLong"
     CDS             1210929..1211069
                     /locus_tag="BSU_11515"
                     /old_locus_tag="BSU11515"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_009513949.1"
                     /translation="MVKVKMWTEWVKCSKVQLIGSLDVPSTSYIEGKVGKWKLKELTS
                     IQ*"
     gene            1210929..1211069
                     /locus_tag="BSU_11515"
                     /old_locus_tag="BSU11515"
     CDS             1211036..1211692
                     /gene="mecA"
                     /locus_tag="BSU_11520"
                     /old_locus_tag="BSU11520"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:10361283, 10447896, 16525504, 19801546, 21435029,
                     23595989"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10361283, 10447896,
                     16525504, 19801546, 21435029, 23595989; Product type f :
                     factor"
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein controlling oligomerization of
                     the AAA+ protein ClpC"
                     /protein_id="NP_389034.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11520"
                     /db_xref="EnsemblGenomes-Tr:CAB13009"
                     /db_xref="GOA:P37958"
                     /db_xref="InterPro:IPR008681"
                     /db_xref="PDB:2Y1R"
                     /db_xref="PDB:3J3R"
                     /db_xref="PDB:3J3S"
                     /db_xref="PDB:3J3T"
                     /db_xref="PDB:3J3U"
                     /db_xref="PDB:3JTP"
                     /db_xref="PDB:3PXG"
                     /db_xref="PDB:3PXI"
                     /db_xref="SubtiList:BG10680"
                     /db_xref="UniProtKB/Swiss-Prot:P37958"
                     /translation="MEIERINEHTVKFYMSYGDIEDRGFDREEIWYNRERSEELFWEV
                     MDEVHEEEEFAVEGPLWIQVQALDKGLEIIVTKAQLSKDGQKLELPIPEDKKQEPASE
                     DLDALLDDFQKEEQAVNQEEKEQKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENR
                     YYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS
                     *"
     gene            1211036..1211692
                     /gene="mecA"
                     /locus_tag="BSU_11520"
                     /old_locus_tag="BSU11520"
     downshifts      1211682
                     /Source="Nicolas_upshifts"
                     /id="D626"
                     /incds=0
                     /nref=120
                     /ntot=308
                     /MaxReadThrough="5.41786"
                     /MaxDrop="7.67172"
                     /score="32.2431225"
                     /energy="-11.8"
                     /TU="U928"
                     /idTUdmin="U928"
                     /TUdmin="-774"
                     /isTUend="FALSE"
     CDS             complement(1211687..1211809)
                     /locus_tag="BSU_11525"
                     /old_locus_tag="BSU11525"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_009513950.1"
                     /translation="MINSCSLYFLLVYMFLIFHISKMAFSCIKKTDFRKEIGLL*"
     gene            complement(1211687..1211809)
                     /locus_tag="BSU_11525"
                     /old_locus_tag="BSU11525"
     S_feature       1211727..1211816
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1229759_1229848"
                     /HighExp="Etha, M9-stat, B60, dia15, T0.30H, Diami, C30,
                     H2O2, dia5, S8"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S412"
     promotor_-35    1211795..1211803
                     /Source="Nicolas_upshift_promotors"
                     /id="U929"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=2965
                     /SigmaFactorBS="aaatcaaaaacatatagacaagcagaaaatacagcgaACAGG
                     AGTTgatcatctttTCCAGAAAGTATACTTCATctggaaaggagagatgacaattgtt
                     t"
                     /listShort="S413, coiA, pepF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1211814..1211832
                     /Source="Nicolas_upshift_promotors"
                     /id="U929"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=2965
                     /SigmaFactorBS="aaatcaaaaacatatagacaagcagaaaatacagcgaACAGG
                     AGTTgatcatctttTCCAGAAAGTATACTTCATctggaaaggagagatgacaattgtt
                     t"
                     /listShort="S413, coiA, pepF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1211818..1211882
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1229850_1229914"
                     /HighExp="Etha, G/S, GM 150, T-4.40H, S2, T-2.40H, Pyr,
                     C90, M9-tran, T-3.40H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH, SigA"
                     /TUshortPSig="0.876, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S413"
     upshifts        1211818
                     /Source="Nicolas_upshifts"
                     /id="U929"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=2965
                     /SigmaFactorBS="aaatcaaaaacatatagacaagcagaaaatacagcgaACAGG
                     AGTTgatcatctttTCCAGAAAGTATACTTCATctggaaaggagagatgacaattgtt
                     t"
                     /listShort="S413, coiA, pepF"
                     /GFF_Attribute="listLong"
     CDS             1211883..1213004
                     /gene="coiA"
                     /locus_tag="BSU_11530"
                     /old_locus_tag="BSU11530"
                     /function="16.1: Circulate"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10438773, 17630974, 23046409, 26880300"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10438773, 17630974,
                     23046409, 26880300; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="protein involved in establishment of DNA
                     transport in competence"
                     /protein_id="NP_389035.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11530"
                     /db_xref="EnsemblGenomes-Tr:CAB13010"
                     /db_xref="GOA:O31604"
                     /db_xref="InterPro:IPR010330"
                     /db_xref="InterPro:IPR021176"
                     /db_xref="SubtiList:BG13135"
                     /db_xref="UniProtKB/Swiss-Prot:O31604"
                     /translation="MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQN
                     KSCAIDIEPESAYHLEGKRQLYVWLKTQRASPILEPYIRTINQRPDVMARIKEHMLAV
                     EYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSTFHWQFINASPY
                     RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGW
                     TKAIHRFRHKPHRFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVW
                     QGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNKNIALRSECSEECLSEAVKQYIDFL
                     CKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE*"
     gene            1211883..1213004
                     /gene="coiA"
                     /locus_tag="BSU_11530"
                     /old_locus_tag="BSU11530"
     promotor_-35    1212658..1212664
                     /Source="Nicolas_upshift_promotors"
                     /id="U930"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=156
                     /SigmaFactorBS="atgagaaacgacagacgcctttttcttttctgccgactgaag
                     TGTTTGTtcctgttagaaaagGGGCAGTTTTTAAGAGTCCggtttttgtgtggcaggg
                     g"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="promotor_-35"
     upshifts        1212676
                     /Source="Nicolas_upshifts"
                     /id="U930"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=156
                     /SigmaFactorBS="atgagaaacgacagacgcctttttcttttctgccgactgaag
                     TGTTTGTtcctgttagaaaagGGGCAGTTTTTAAGAGTCCggtttttgtgtggcaggg
                     g"
                     /listShort="pepF"
                     /listLong="S414, S415"
     promotor_-10    1212679..1212697
                     /Source="Nicolas_upshift_promotors"
                     /id="U930"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=156
                     /SigmaFactorBS="atgagaaacgacagacgcctttttcttttctgccgactgaag
                     TGTTTGTtcctgttagaaaagGGGCAGTTTTTAAGAGTCCggtttttgtgtggcaggg
                     g"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="promotor_-10"
     promotor_-35    1212890..1212898
                     /Source="Nicolas_upshift_promotors"
                     /id="U931"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=546
                     /SigmaFactorBS="agcggttaaacagtatattgattttttgtgcaaGAAGGGATT
                     tttaagggagaCTCAGAAAGAAGTATATGTgctgaatcagcctgcaggaggcatacac
                     t"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="promotor_-35"
     promotor_-10    1212910..1212928
                     /Source="Nicolas_upshift_promotors"
                     /id="U931"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=546
                     /SigmaFactorBS="agcggttaaacagtatattgattttttgtgcaaGAAGGGATT
                     tttaagggagaCTCAGAAAGAAGTATATGTgctgaatcagcctgcaggaggcatacac
                     t"
                     /listShort="pepF"
                     /listLong="S414, S415"
                     /label="promotor_-10"
     upshifts        1212917
                     /Source="Nicolas_upshifts"
                     /id="U931"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=546
                     /SigmaFactorBS="agcggttaaacagtatattgattttttgtgcaaGAAGGGATT
                     tttaagggagaCTCAGAAAGAAGTATATGTgctgaatcagcctgcaggaggcatacac
                     t"
                     /listShort="pepF"
                     /listLong="S414, S415"
     promotor_-35    1212998..1213004
                     /Source="Nicolas_upshift_promotors"
                     /id="U932"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=911
                     /SigmaFactorBS="tctcatagaaagagaccgcagctgttttatAGAATGAgtttg
                     tcttatttgGCTCACCCTAAGacaaaggtggtgggcaggctgtgaaaggcacaaaagg
                     a"
                     /listShort="pepF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1213019..1213030
                     /Source="Nicolas_upshift_promotors"
                     /id="U932"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=911
                     /SigmaFactorBS="tctcatagaaagagaccgcagctgttttatAGAATGAgtttg
                     tcttatttgGCTCACCCTAAGacaaaggtggtgggcaggctgtgaaaggcacaaaagg
                     a"
                     /listShort="pepF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1213028
                     /Source="Nicolas_upshifts"
                     /id="U932"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=911
                     /SigmaFactorBS="tctcatagaaagagaccgcagctgttttatAGAATGAgtttg
                     tcttatttgGCTCACCCTAAGacaaaggtggtgggcaggctgtgaaaggcacaaaagg
                     a"
                     /listShort="pepF"
                     /GFF_Attribute="listLong"
     CDS             1213051..1215063
                     /gene="pepF"
                     /locus_tag="BSU_11540"
                     /old_locus_tag="BSU11540"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11741842"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11741842; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="NP_389036.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11540"
                     /db_xref="EnsemblGenomes-Tr:CAB13011"
                     /db_xref="GOA:O31605"
                     /db_xref="InterPro:IPR001567"
                     /db_xref="InterPro:IPR004438"
                     /db_xref="InterPro:IPR013647"
                     /db_xref="SubtiList:BG13136"
                     /db_xref="UniProtKB/Swiss-Prot:O31605"
                     /translation="MKGTKGKVFRVFTAFLAFVLFITAYDLTKGSEKPEDIHNTSLLR
                     NSCFFNWLESKKTRGITMAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAV
                     KELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLYTYAHMRSDQDTGNSFYQGL
                     NDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVL
                     SEKEEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESEN
                     REVRKNAFDAVYKTYGQYKNTMATTLSGTVKKDNFYARVKKYKSAREAALSNNSIPEE
                     VYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGMKVTYEEAKDYM
                     LKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNN
                     LFTLVHEFGHSVHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQR
                     LYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQEGEPLTPELLTNVYYDLNKKYFGDG
                     MVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFLKAG
                     SSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS*"
     gene            1213051..1215063
                     /gene="pepF"
                     /locus_tag="BSU_11540"
                     /old_locus_tag="BSU11540"
     promotor_-35    1213126..1213133
                     /Source="Nicolas_upshift_promotors"
                     /id="U933"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.802197802197802"
                     /psig="0.926073926073926"
                     /xcortree=3181
                     /SigmaFactorBS="cattcgttctcttcattactgcatatGATTTGACaaaaggca
                     gtgaaaAACCGGAAGATATTCACAACacaagtttattgagaaacagctgttttttcaa
                     t"
                     /listShort="S414"
                     /listLong="S415"
                     /label="promotor_-35"
     promotor_-10    1213148..1213167
                     /Source="Nicolas_upshift_promotors"
                     /id="U933"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.802197802197802"
                     /psig="0.926073926073926"
                     /xcortree=3181
                     /SigmaFactorBS="cattcgttctcttcattactgcatatGATTTGACaaaaggca
                     gtgaaaAACCGGAAGATATTCACAACacaagtttattgagaaacagctgttttttcaa
                     t"
                     /listShort="S414"
                     /listLong="S415"
                     /label="promotor_-10"
     upshifts        1213160
                     /Source="Nicolas_upshifts"
                     /id="U933"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.802197802197802"
                     /psig="0.926073926073926"
                     /xcortree=3181
                     /SigmaFactorBS="cattcgttctcttcattactgcatatGATTTGACaaaaggca
                     gtgaaaAACCGGAAGATATTCACAACacaagtttattgagaaacagctgttttttcaa
                     t"
                     /listShort="S414"
                     /listLong="S415"
     downshifts      1215010
                     /Source="Nicolas_upshifts"
                     /id="D627"
                     /incds=0
                     /nref=98
                     /ntot=339
                     /MaxReadThrough="4.70576"
                     /MaxDrop="5.74441"
                     /score="19.0969124"
                     /energy="-15.2"
                     /TU="U933"
                     /idTUdmin="U931"
                     /TUdmin=2
                     /isTUend="TRUE"
     S_feature       1215064..1215365
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1233096_1233397"
                     /HighExp="Etha, dia15, Diami, B60, M9-stat, S8, M0t90,
                     dia5, B36, T0.30H"
                     /AntisenseName="yizD"
                     /AntisenseCor="-1.29003203536192E-2"
                     /AntisenseRegPval="-0.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.926"
                     /TUlongSig="SigH, SigB"
                     /TUlongPSig="0.999, 0.999"
                     /label="S414"
     CDS             complement(1215101..1215268)
                     /gene="yizD"
                     /locus_tag="BSU_11549"
                     /old_locus_tag="BSU11549"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097703.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11549"
                     /db_xref="EnsemblGenomes-Tr:CAX52593"
                     /db_xref="GOA:C0H3Y6"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y6"
                     /translation="MMSTLISIVCIAVFFCLNILGMMHMLPLYITSPLLFLSILFTLY
                     RLNHRKTFKGF*"
     gene            complement(1215101..1215268)
                     /gene="yizD"
                     /locus_tag="BSU_11549"
                     /old_locus_tag="BSU11549"
     downshifts      complement(1215114)
                     /Source="Nicolas_upshifts"
                     /id="D628"
                     /incds=0
                     /nref=8
                     /ntot=61
                     /MaxReadThrough="1.527"
                     /MaxDrop="5.54041"
                     /score="-4.56163992"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U934"
                     /TUdmin="-8"
                     /isTUend="TRUE"
     promotor_-10    complement(1215288..1215306)
                     /Source="Nicolas_upshift_promotors"
                     /id="U934"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1166
                     /SigmaFactorBS="acaacctctatgcttaatgttcatatttttgtcacaaAACAT
                     AacgaagtgcattcacTCATATCCTTATAAGGAAAaaggacgaggaggaccgccatga
                     t"
                     /listShort="yizD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1215304)
                     /Source="Nicolas_upshifts"
                     /id="U934"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1166
                     /SigmaFactorBS="acaacctctatgcttaatgttcatatttttgtcacaaAACAT
                     AacgaagtgcattcacTCATATCCTTATAAGGAAAaaggacgaggaggaccgccatga
                     t"
                     /listShort="yizD"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1215322..1215327)
                     /Source="Nicolas_upshift_promotors"
                     /id="U934"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1166
                     /SigmaFactorBS="acaacctctatgcttaatgttcatatttttgtcacaaAACAT
                     AacgaagtgcattcacTCATATCCTTATAAGGAAAaaggacgaggaggaccgccatga
                     t"
                     /listShort="yizD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1215358..1215365
                     /Source="Nicolas_upshift_promotors"
                     /id="U935"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig="0.883116883116883"
                     /xcortree=90
                     /SigmaFactorBS="gtgaatgcacttcgttatgttttgtgacaaaaatatgaacat
                     taagcatagAGGTTGTCaaaagtcgacatctTTTGTTATCATAAGGATGTGaaattga
                     t"
                     /listShort="S415"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1215367..1215492
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1233399_1233524"
                     /HighExp="B36, T-1.10H, nit, T-0.40H, M9-tran, LoTm, Pyr,
                     Etha, Salt, T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.883"
                     /TUlongSig="SigA, SigH, SigB"
                     /TUlongPSig="0.926, 0.999, 0.999"
                     /label="S415"
     upshifts        1215367
                     /Source="Nicolas_upshifts"
                     /id="U935"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig="0.883116883116883"
                     /xcortree=90
                     /SigmaFactorBS="gtgaatgcacttcgttatgttttgtgacaaaaatatgaacat
                     taagcatagAGGTTGTCaaaagtcgacatctTTTGTTATCATAAGGATGTGaaattga
                     t"
                     /listShort="S415"
                     /GFF_Attribute="listLong"
     misc_RNA        1215373..1215511
                     /gene="roxS"
                     /locus_tag="BSU_misc_RNA_67"
                     /product="small regulatory RNA (NO regulated)"
                     /experiment="publication(s) with functional evidences,
                     PMID:19682248, 19786493, 20511587, 20525796, 25643072,
                     28436820"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 19682248, 19786493,
                     20511587, 20525796, 25643072, 28436820; Product type n :
                     RNA"
     gene            1215373..1215511
                     /gene="roxS"
                     /locus_tag="BSU_misc_RNA_67"
     promotor_-10    1215380..1215399
                     /Source="Nicolas_upshift_promotors"
                     /id="U935"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.583416583416583"
                     /psig="0.883116883116883"
                     /xcortree=90
                     /SigmaFactorBS="gtgaatgcacttcgttatgttttgtgacaaaaatatgaacat
                     taagcatagAGGTTGTCaaaagtcgacatctTTTGTTATCATAAGGATGTGaaattga
                     t"
                     /listShort="S415"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     downshifts      1215449
                     /Source="Nicolas_upshifts"
                     /id="D629"
                     /incds=0
                     /nref=96
                     /ntot=135
                     /MaxReadThrough="3.50613"
                     /MaxDrop="9.07209"
                     /score="5.30186633"
                     /energy="-11.6"
                     /TU="U935"
                     /idTUdmin="U933"
                     /TUdmin=89
                     /isTUend="FALSE"
     CDS             complement(1215582..1216481)
                     /gene="spxH"
                     /locus_tag="BSU_11550"
                     /old_locus_tag="BSU11550"
                     /function="16.3: Control"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:17293416, 17908206, 21378193, 22194450, 24942655,
                     25353645, 27191337, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17293416, 17908206,
                     21378193, 22194450, 24942655, 25353645, 27191337,
                     22720735; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol management effector of SpxA degradation"
                     /protein_id="NP_389037.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11550"
                     /db_xref="EnsemblGenomes-Tr:CAB13012"
                     /db_xref="GOA:O31606"
                     /db_xref="InterPro:IPR036249"
                     /db_xref="SubtiList:BG13137"
                     /db_xref="UniProtKB/Swiss-Prot:O31606"
                     /translation="MTNYQHELYFAHCHGHPKKPLEIYMFVDPLCPECWSLEPVIKKL
                     KIRYGRFFTLRIIASASLTALNKKRKKHLLAEAWEKIASRSGMSCDGNVWFEQDQPLS
                     SPYMAALAFKAAELQGRKAGMQFLRNMQESLFVSKKNITDENVLLEIAENTSLDLEEF
                     KKDLHSQSAVKALQCDMKIAAEMDVSVNPTLTFFNTQHEDEGLKVPGSYSYDVYEEIL
                     FEMLGDEPKPSETPPLECFIEYFRFVASKEIALVYDLSLEEVEKEMKKLAFAKKVAKV
                     EAKHGMFWKSLSTYSDEYQSCEK*"
     gene            complement(1215582..1216481)
                     /gene="spxH"
                     /locus_tag="BSU_11550"
                     /old_locus_tag="BSU11550"
     downshifts      complement(1215613)
                     /Source="Nicolas_upshifts"
                     /id="D630"
                     /incds=0
                     /nref=185
                     /ntot=251
                     /MaxReadThrough="3.70729"
                     /MaxDrop="5.65601"
                     /score="17.9327625"
                     /energy="-13.3"
                     /TU="U937"
                     /idTUdmin="U937"
                     /TUdmin="-89"
                     /isTUend="FALSE"
     promotor_-35    1215817..1215822
                     /Source="Nicolas_upshift_promotors"
                     /id="U936"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1111
                     /SigmaFactorBS="ataaaacattctaaaggcggtgtttccgacggcttcggctcg
                     tcgccaAGCATCtcaaataaaatttctTCATATACATCATATGAGTagctgccaggaa
                     c"
                     /listShort="S416"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1215829
                     /Source="Nicolas_upshifts"
                     /id="U936"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1111
                     /SigmaFactorBS="ataaaacattctaaaggcggtgtttccgacggcttcggctcg
                     tcgccaAGCATCtcaaataaaatttctTCATATACATCATATGAGTagctgccaggaa
                     c"
                     /listShort="S416"
                     /GFF_Attribute="listLong"
     promotor_-10    1215838..1215856
                     /Source="Nicolas_upshift_promotors"
                     /id="U936"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1111
                     /SigmaFactorBS="ataaaacattctaaaggcggtgtttccgacggcttcggctcg
                     tcgccaAGCATCtcaaataaaatttctTCATATACATCATATGAGTagctgccaggaa
                     c"
                     /listShort="S416"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1215845..1217746
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1233877_1235778"
                     /HighExp="S6, S4, S5, S8, S3, S7, BT, B36, C30, T5.0H"
                     /AntisenseName="yjbH"
                     /AntisenseCor="-0.61019541931037402"
                     /AntisenseRegPval="-28.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S416"
     CDS             complement(1216478..1216876)
                     /gene="yjbI"
                     /locus_tag="BSU_11560"
                     /old_locus_tag="BSU11560"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15866723, 17293416;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative thiol management oxidoreductase
                     component"
                     /protein_id="NP_389038.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11560"
                     /db_xref="EnsemblGenomes-Tr:CAB13013"
                     /db_xref="GOA:O31607"
                     /db_xref="InterPro:IPR001486"
                     /db_xref="InterPro:IPR009050"
                     /db_xref="InterPro:IPR019795"
                     /db_xref="PDB:1UX8"
                     /db_xref="SubtiList:BG13138"
                     /db_xref="UniProtKB/Swiss-Prot:O31607"
                     /translation="MGQSFNAPYEAIGEELLSQLVDTFYERVASHPLLKPIFPSDLTE
                     TARKQKQFLTQYLGGPPLYTEEHGHPMLRARHLPFPITNERADAWLSCMKDAMDHVGL
                     EGEIREFLFGRLELTARHMVNQTEAEDRSS*"
     gene            complement(1216478..1216876)
                     /gene="yjbI"
                     /locus_tag="BSU_11560"
                     /old_locus_tag="BSU11560"
     S_feature       complement(1216877..1217056)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1234909_1235088_c"
                     /HighExp="Diami, dia5, dia15, Etha, H2O2, C90, LoTm, Heat,
                     Salt, M0t90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="SigD, SigA"
                     /TUlongPSig="1, 0.999"
                     /label="S417"
     promotor_-10    complement(1217048..1217067)
                     /Source="Nicolas_upshift_promotors"
                     /id="U937"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=1912
                     /SigmaFactorBS="tccctctggtttttttgcgaagtgaaatctTACGCATTcctg
                     atttttaTGTGATATGATATGAAATACaaaccccggctgtcagccgaaatgagtcatc
                     a"
                     /listShort="S417, yjbI, yjbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1217056)
                     /Source="Nicolas_upshifts"
                     /id="U937"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=1912
                     /SigmaFactorBS="tccctctggtttttttgcgaagtgaaatctTACGCATTcctg
                     atttttaTGTGATATGATATGAAATACaaaccccggctgtcagccgaaatgagtcatc
                     a"
                     /listShort="S417, yjbI, yjbH"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1217079..1217086)
                     /Source="Nicolas_upshift_promotors"
                     /id="U937"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=1912
                     /SigmaFactorBS="tccctctggtttttttgcgaagtgaaatctTACGCATTcctg
                     atttttaTGTGATATGATATGAAATACaaaccccggctgtcagccgaaatgagtcatc
                     a"
                     /listShort="S417, yjbI, yjbH"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1217131..1217676)
                     /gene="cwlQ"
                     /locus_tag="BSU_11570"
                     /old_locus_tag="BSU11570"
                     /EC_number="3.2.1.-"
                     /EC_number="3.2.1.17"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:20609359"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 20609359; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional muramidase and murein lytic
                     transglycosylase"
                     /protein_id="NP_389039.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11570"
                     /db_xref="EnsemblGenomes-Tr:CAB13014"
                     /db_xref="GOA:O31608"
                     /db_xref="InterPro:IPR000189"
                     /db_xref="InterPro:IPR008258"
                     /db_xref="InterPro:IPR023346"
                     /db_xref="SubtiList:BG13139"
                     /db_xref="UniProtKB/Swiss-Prot:O31608"
                     /translation="MLNSANTTAPSLLSAYGLNSYTSSNSGSVTKAAESTETAVADSA
                     SNKHEANQIRSGDFSIDSAIKKAADKYGVDEKLIRAVIKQESGFNAKAVSGAGAMGLM
                     QLMPSTASSLGVSNPLDPQQNVEGGTKYLKQMLDKYDGNVSMALAAYNAGPGNVDRYG
                     GIPPFQETQNYVKKITSVYYA*"
     gene            complement(1217131..1217676)
                     /gene="cwlQ"
                     /locus_tag="BSU_11570"
                     /old_locus_tag="BSU11570"
     downshifts      complement(1217155)
                     /Source="Nicolas_upshifts"
                     /id="D631"
                     /incds=0
                     /nref=101
                     /ntot=222
                     /MaxReadThrough="4.1014"
                     /MaxDrop="5.00847"
                     /score="6.97790581"
                     /energy="-9.1"
                     /TU="U938,U939"
                     /idTUdmin="U938"
                     /TUdmin="-90"
                     /isTUend="FALSE"
     S_feature       complement(1217677..1217879)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1235709_1235911_c"
                     /HighExp="T0.30H, Gly, C90, GM 10, GM 45, M0t90, Lbstat,
                     C30, Lbtran, GM 25"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD, SigA"
                     /TUshortPSig="1, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S418"
     CDS             complement(1217880..1218452)
                     /gene="yjbK"
                     /locus_tag="BSU_11580"
                     /old_locus_tag="BSU11580"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9642185, 12456267,
                     16905149, 20509597, 26904951, 27881678; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA/thiamine triphosphatase"
                     /protein_id="NP_389040.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11580"
                     /db_xref="EnsemblGenomes-Tr:CAB13015"
                     /db_xref="GOA:O31609"
                     /db_xref="InterPro:IPR009195"
                     /db_xref="InterPro:IPR023577"
                     /db_xref="InterPro:IPR033469"
                     /db_xref="SubtiList:BG13140"
                     /db_xref="UniProtKB/Swiss-Prot:O31609"
                     /translation="MSQEIEIEFKNMLTKQEFKNIASALQLTEKDFTDQKNHYFDTDS
                     FALKQKHAALRIRRKNGKYVLTLKEPADVGLLETHQQLSEVSDLAGFSVPEGPVKDQL
                     HKLQIDTDAIQYFGSLATNRAEKETEKGLIVLDHSRYLNKEDYEIEFEAADWHEGRQA
                     FEKLLQQFSIPQRETKNKILRFYEEKRKSI*"
     gene            complement(1217880..1218452)
                     /gene="yjbK"
                     /locus_tag="BSU_11580"
                     /old_locus_tag="BSU11580"
     promotor_-10    complement(1218025..1218043)
                     /Source="Nicolas_upshift_promotors"
                     /id="U938"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2803
                     /SigmaFactorBS="caaaccgtgcggaaaaagaaacagaaaaaggCTTAATAGttt
                     tagaccacaGCCGATATTTAAATAAAGAggactatgaaattgaatttgaggcggcgga
                     t"
                     /listShort="S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="promotor_-10"
     upshifts        complement(1218034)
                     /Source="Nicolas_upshifts"
                     /id="U938"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2803
                     /SigmaFactorBS="caaaccgtgcggaaaaagaaacagaaaaaggCTTAATAGttt
                     tagaccacaGCCGATATTTAAATAAAGAggactatgaaattgaatttgaggcggcgga
                     t"
                     /listShort="S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
     promotor_-35    complement(1218056..1218063)
                     /Source="Nicolas_upshift_promotors"
                     /id="U938"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2803
                     /SigmaFactorBS="caaaccgtgcggaaaaagaaacagaaaaaggCTTAATAGttt
                     tagaccacaGCCGATATTTAAATAAAGAggactatgaaattgaatttgaggcggcgga
                     t"
                     /listShort="S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="promotor_-35"
     promotor_-10    complement(1218481..1218500)
                     /Source="Nicolas_upshift_promotors"
                     /id="U939"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.782217782217782"
                     /psig="0.999000999001"
                     /xcortree=2255
                     /SigmaFactorBS="acaaagtacagattcattttatcatatcgagctcgaTATTGA
                     TAaacctaacatctaaAGAGATAATAGTAAAAATAAgatttacagggcggaaaggaag
                     a"
                     /listShort="yjbK, S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="promotor_-10"
     upshifts        complement(1218498)
                     /Source="Nicolas_upshifts"
                     /id="U939"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.782217782217782"
                     /psig="0.999000999001"
                     /xcortree=2255
                     /SigmaFactorBS="acaaagtacagattcattttatcatatcgagctcgaTATTGA
                     TAaacctaacatctaaAGAGATAATAGTAAAAATAAgatttacagggcggaaaggaag
                     a"
                     /listShort="yjbK, S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
     promotor_-35    1218514..1218517
                     /Source="Nicolas_upshift_promotors"
                     /id="U940"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.534465534465534"
                     /psig="0.994005994005994"
                     /xcortree=2570
                     /SigmaFactorBS="ccctgtaaatcttatttttactattatctctttagatgttag
                     gtTTATcaatatcgagctcgaTATGATAAAATGAATCTGTActttgtttaaaaaagga
                     g"
                     /listShort="yjbL, yjbM, ppnKA, yjbO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(1218515..1218522)
                     /Source="Nicolas_upshift_promotors"
                     /id="U939"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.782217782217782"
                     /psig="0.999000999001"
                     /xcortree=2255
                     /SigmaFactorBS="acaaagtacagattcattttatcatatcgagctcgaTATTGA
                     TAaacctaacatctaaAGAGATAATAGTAAAAATAAgatttacagggcggaaaggaag
                     a"
                     /listShort="yjbK, S418, yjbJ"
                     /listLong="S417, yjbI, yjbH"
                     /label="promotor_-35"
     upshifts        1218530
                     /Source="Nicolas_upshifts"
                     /id="U940"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.534465534465534"
                     /psig="0.994005994005994"
                     /xcortree=2570
                     /SigmaFactorBS="ccctgtaaatcttatttttactattatctctttagatgttag
                     gtTTATcaatatcgagctcgaTATGATAAAATGAATCTGTActttgtttaaaaaagga
                     g"
                     /listShort="yjbL, yjbM, ppnKA, yjbO"
                     /GFF_Attribute="listLong"
     promotor_-10    1218533..1218552
                     /Source="Nicolas_upshift_promotors"
                     /id="U940"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.534465534465534"
                     /psig="0.994005994005994"
                     /xcortree=2570
                     /SigmaFactorBS="ccctgtaaatcttatttttactattatctctttagatgttag
                     gtTTATcaatatcgagctcgaTATGATAAAATGAATCTGTActttgtttaaaaaagga
                     g"
                     /listShort="yjbL, yjbM, ppnKA, yjbO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1218577..1218945
                     /gene="yjbL"
                     /locus_tag="BSU_11590"
                     /old_locus_tag="BSU11590"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 22333191; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_389041.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11590"
                     /db_xref="EnsemblGenomes-Tr:CAB13016"
                     /db_xref="InterPro:IPR020908"
                     /db_xref="SubtiList:BG13141"
                     /db_xref="UniProtKB/Swiss-Prot:O31610"
                     /translation="MQNRIEILNATLSDDQLRLACQTEGNEAERKPSGQMLVDSDHFA
                     FVYILELADSFEYVIIKEHVWPELKQAHAQKIPVVLEAGDQTIELAGLHEELEYLLEN
                     IKDNANYGEEMEEKVKRVFL*"
     gene            1218577..1218945
                     /gene="yjbL"
                     /locus_tag="BSU_11590"
                     /old_locus_tag="BSU11590"
     CDS             1218974..1219609
                     /gene="relP"
                     /locus_tag="BSU_11600"
                     /old_locus_tag="BSU11600"
                     /EC_number="2.7.6.5"
                     /function="16.1: Circulate"
                     /function="16.14: Store"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17714452, 18067544, 19447912, 24163341, 25331430,
                     26825398"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17714452, 18067544,
                     19447912, 24163341, 25331430, 26825398; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="(p)ppGpp synthetase"
                     /protein_id="NP_389042.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11600"
                     /db_xref="EnsemblGenomes-Tr:CAB13017"
                     /db_xref="GOA:O31611"
                     /db_xref="InterPro:IPR007685"
                     /db_xref="PDB:5DEC"
                     /db_xref="PDB:5DED"
                     /db_xref="PDB:5F2V"
                     /db_xref="SubtiList:BG13142"
                     /db_xref="UniProtKB/Swiss-Prot:O31611"
                     /translation="MDDKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDDHSPIEFVT
                     GRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQFVDDIQIVKEMLFARKDFTVV
                     DQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYK
                     YSGNIPEKVKLRLQRASEAASRLDEEMSEIRGEVQEAQAAFSRKKKGSEQQ*"
     gene            1218974..1219609
                     /gene="relP"
                     /locus_tag="BSU_11600"
                     /old_locus_tag="BSU11600"
     CDS             1219628..1220428
                     /gene="ppnKA"
                     /locus_tag="BSU_11610"
                     /old_locus_tag="BSU11610"
                     /EC_number="2.7.1.23"
                     /function="16.14: Store"
                     /function="16.7: Manage energy"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12682299, 12897004, 16233726, 16511117, 18720024,
                     24048943"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12682299, 12897004,
                     16233726, 16511117, 18720024, 24048943; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic polyphosphate/ATP-NAD kinase
                     (quinolate activated)"
                     /protein_id="NP_389043.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11610"
                     /db_xref="EnsemblGenomes-Tr:CAB13018"
                     /db_xref="GOA:O31612"
                     /db_xref="InterPro:IPR002504"
                     /db_xref="InterPro:IPR016064"
                     /db_xref="InterPro:IPR017437"
                     /db_xref="InterPro:IPR017438"
                     /db_xref="SubtiList:BG13143"
                     /db_xref="UniProtKB/Swiss-Prot:O31612"
                     /translation="MKFAVSSKGDQVSDTLKSKIQAYLLDFDMELDENEPEIVISVGG
                     DGTLLYAFHRYSDRLDKTAFVGVHTGHLGFYADWVPHEIEKLVLAIAKTPYHTVEYPL
                     LEVIVTYHENEREERYLALNECTIKSIEGSLVADVEIKGQLFETFRGDGLCLSTPSGS
                     TAYNKALGGAIIHPSIRAIQLAEMASINNRVFRTVGSPLLLPSHHDCMIKPRNEVDFQ
                     VTIDHLTLLHKDVKSIRCQVASEKVRFARFRPFPFWKRVQDSFIGKGE*"
     gene            1219628..1220428
                     /gene="ppnKA"
                     /locus_tag="BSU_11610"
                     /old_locus_tag="BSU11610"
     CDS             1220491..1221342
                     /gene="yjbO"
                     /locus_tag="BSU_11620"
                     /old_locus_tag="BSU11620"
                     /EC_number="5.4.99.-"
                     /function="16.8: Protect"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridylate synthase"
                     /protein_id="NP_389044.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11620"
                     /db_xref="EnsemblGenomes-Tr:CAB13019"
                     /db_xref="GOA:O31613"
                     /db_xref="InterPro:IPR002942"
                     /db_xref="InterPro:IPR006145"
                     /db_xref="InterPro:IPR006224"
                     /db_xref="InterPro:IPR006225"
                     /db_xref="InterPro:IPR020103"
                     /db_xref="SubtiList:BG13144"
                     /db_xref="UniProtKB/Swiss-Prot:O31613"
                     /translation="MTVKEYAGELGISKRLLTDIKFGGGDLQINGEHVTVKYVLKEGD
                     LLIVKFPEEQVSETLLAEPVPLDILYEDEHVLVINKQPYVSSIPSREHPSGSIANGII
                     DHYQTTGVRATVHLVTRLDRDTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGR
                     MAQMEGTVDAPIGRHPDSIIERTVTPDGQKAVTHFYVTCANDDMTSVALQLETGRTHQ
                     IRVHMSYLGHPLCGDTLYGGTRQEIGRQALHSEHLSFIHPLTQENMRFHAPLPQDMSK
                     LIKGENH*"
     gene            1220491..1221342
                     /gene="yjbO"
                     /locus_tag="BSU_11620"
                     /old_locus_tag="BSU11620"
     downshifts      1221301
                     /Source="Nicolas_upshifts"
                     /id="D632"
                     /incds=0
                     /nref=203
                     /ntot=256
                     /MaxReadThrough="0.25796"
                     /MaxDrop="5.73002"
                     /score="21.4914497"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U940"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1221355..1222089)
                     /gene="prpE"
                     /locus_tag="BSU_11630"
                     /old_locus_tag="BSU11630"
                     /EC_number="3.6.1.17"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12059787, 16740944, 21092197, 23824080, 28516732"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12059787, 16740944,
                     21092197, 23824080, 28516732; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphorylated protein phosphatase E and
                     diadenosine-polyphosphate hydrolase"
                     /protein_id="NP_389045.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11630"
                     /db_xref="EnsemblGenomes-Tr:CAB13020"
                     /db_xref="GOA:O31614"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR023937"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="SubtiList:BG13145"
                     /db_xref="UniProtKB/Swiss-Prot:O31614"
                     /translation="MAYDIISDIHGCYDEMTALIQKLGYTIKNGVPVHEEGRVLVFAG
                     DLTDRGPKSIEVIRFVAGAYEKGAVRYVPGNHCNKLYRYLKGNPVKVMHGLETTAAEL
                     EELSKDEKKSVSEQFMKLYETAPLYDILHNGELVVAHAGIRADDIGKYTRRVKDFVLY
                     GDVTGETYPDGRPIRRDWAAAYNGKAWVVYGHTPVKEPRKVNRTINIDTGCVFGNQLT
                     GFRFPEIETVSVPSSLPYDESRFRPI*"
     gene            complement(1221355..1222089)
                     /gene="prpE"
                     /locus_tag="BSU_11630"
                     /old_locus_tag="BSU11630"
     downshifts      complement(1221377)
                     /Source="Nicolas_upshifts"
                     /id="D633"
                     /incds=0
                     /nref=22
                     /ntot=152
                     /MaxReadThrough="1.18091"
                     /MaxDrop="3.57735"
                     /score="3.24324561"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U938"
                     /TUdmin="-4312"
                     /isTUend="FALSE"
     promotor_-35    1222211..1222215
                     /Source="Nicolas_upshift_promotors"
                     /id="U941"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.768231768231768"
                     /psig="0.996003996003996"
                     /xcortree=1820
                     /SigmaFactorBS="ttctaaacaggattaagaccttatcACTTTatttttcatcat
                     caccCTTGTTAAAATCGCGTTATGttttttaaaaatgaggttttgttctctgagtgag
                     a"
                     /listShort="S419, yjbQ, NA"
                     /listLong="tenA, tenI, thiO, thiS, thiG, thiF, thiD, fabI"
                     /label="promotor_-35"
     promotor_-10    1222232..1222251
                     /Source="Nicolas_upshift_promotors"
                     /id="U941"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.768231768231768"
                     /psig="0.996003996003996"
                     /xcortree=1820
                     /SigmaFactorBS="ttctaaacaggattaagaccttatcACTTTatttttcatcat
                     caccCTTGTTAAAATCGCGTTATGttttttaaaaatgaggttttgttctctgagtgag
                     a"
                     /listShort="S419, yjbQ, NA"
                     /listLong="tenA, tenI, thiO, thiS, thiG, thiF, thiD, fabI"
                     /label="promotor_-10"
     upshifts        1222246
                     /Source="Nicolas_upshifts"
                     /id="U941"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.768231768231768"
                     /psig="0.996003996003996"
                     /xcortree=1820
                     /SigmaFactorBS="ttctaaacaggattaagaccttatcACTTTatttttcatcat
                     caccCTTGTTAAAATCGCGTTATGttttttaaaaatgaggttttgttctctgagtgag
                     a"
                     /listShort="S419, yjbQ, NA"
                     /listLong="tenA, tenI, thiO, thiS, thiG, thiF, thiD, fabI"
     S_feature       1222247..1222323
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1240279_1240355"
                     /HighExp="H2O2, Diami, dia15, Paraq, Oxctl, Heat, G180,
                     Salt, BMM, G135"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S419"
     CDS             1222324..1224168
                     /gene="kefQ"
                     /locus_tag="BSU_11640"
                     /old_locus_tag="BSU11640"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 15849754, 16850406,
                     21742892, 24330391; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="gated K+/H+ antiporter"
                     /protein_id="NP_389046.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11640"
                     /db_xref="EnsemblGenomes-Tr:CAB13021"
                     /db_xref="GOA:O31615"
                     /db_xref="InterPro:IPR003148"
                     /db_xref="InterPro:IPR006037"
                     /db_xref="InterPro:IPR006153"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="InterPro:IPR036721"
                     /db_xref="SubtiList:BG13146"
                     /db_xref="UniProtKB/Swiss-Prot:O31615"
                     /translation="MAHTSVASLVVVLIVAFLTPILLHRFKLSIPVVVAEIIMGLIIG
                     KSGLNLVVEGDTWLQTLSMLGFIFLMFLSGLEIDFSSFEKGKKKQFLPNGKEAPNTFA
                     AASVIFVGIFILSLLLSYGFVLAGFIQNAFLMTLIISTISLGVVVPTLKEERIMNSNI
                     GQIILLVAVIADLATMILLAVFSSLYGEDSGNMWLLMILFAAGVVLYFFGRVFKHRSF
                     VQSMSKGTIQIGTRAIFTLIIVLVALSESLGAENILGAFLAGVLVSLLSPNKELVQQL
                     DSFGYGFLIPIFFVMVGVKLDIWTLFQDKTILIMIPLLLLALLVSKIIPVMYLKKWYD
                     NRTIFASGFLLTSTLSLVIAAATIGQQLHVISTNMSGALILVAVIASIFTPICFKKLY
                     KREEQPEEKKTITFIGANQMTLPVTLELPEEEYDVRVVHVYQENAEEKLSESVFAVET
                     ISDYEHETLESLGIFETDILVVATGNEDMNADIALLAKDKGTERVIASVGSPEHEAAL
                     KEQGISIFSILLSTKTLLRALIEAPGVMKLLTNQESSLYQINMENSKYDGVILREFPL
                     TGDVIFVRIFRGVDSIVPHGDTRLKLGDRLIVTGSRGYVTDLKKTLEG*"
     gene            1222324..1224168
                     /gene="kefQ"
                     /locus_tag="BSU_11640"
                     /old_locus_tag="BSU11640"
     misc_feature    complement(1222651..1222670)
                     /Source="Nicolas_upshift_promotors"
                     /id="U942"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig="0.996003996003996"
                     /xcortree=3108
                     /SigmaFactorBS="taatcagggtcatcaaaaatgcattttggataaatccggcca
                     agacgaacccataggacaagagcAATGATAAAATAAAAATACCgacgaaaataacaga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1222675)
                     /Source="Nicolas_upshifts"
                     /id="U942"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.995004995004995"
                     /psig="0.996003996003996"
                     /xcortree=3108
                     /SigmaFactorBS="taatcagggtcatcaaaaatgcattttggataaatccggcca
                     agacgaacccataggacaagagcAATGATAAAATAAAAATACCgacgaaaataacaga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    1224170..1224177
                     /Source="Nicolas_upshift_promotors"
                     /id="U943"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.878121878121878"
                     /psig="0.999000999001"
                     /xcortree=2884
                     /SigmaFactorBS="taacggatcttaagaaaacattggaaggataaaTCTTGACCa
                     aataaggattcgTGTTAATATAGAGGTGCAGAacaattcaatatgtattcgtttaacc
                     a"
                     /listShort="NA, tenA, tenI, thiO, thiS, thiG, thiF, thiD"
                     /listLong="fabI"
                     /label="promotor_-35"
     promotor_-10    1224191..1224210
                     /Source="Nicolas_upshift_promotors"
                     /id="U943"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.878121878121878"
                     /psig="0.999000999001"
                     /xcortree=2884
                     /SigmaFactorBS="taacggatcttaagaaaacattggaaggataaaTCTTGACCa
                     aataaggattcgTGTTAATATAGAGGTGCAGAacaattcaatatgtattcgtttaacc
                     a"
                     /listShort="NA, tenA, tenI, thiO, thiS, thiG, thiF, thiD"
                     /listLong="fabI"
                     /label="promotor_-10"
     upshifts        1224197
                     /Source="Nicolas_upshifts"
                     /id="U943"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.878121878121878"
                     /psig="0.999000999001"
                     /xcortree=2884
                     /SigmaFactorBS="taacggatcttaagaaaacattggaaggataaaTCTTGACCa
                     aataaggattcgTGTTAATATAGAGGTGCAGAacaattcaatatgtattcgtttaacc
                     a"
                     /listShort="NA, tenA, tenI, thiO, thiS, thiG, thiF, thiD"
                     /listLong="fabI"
     misc_RNA        1224230..1224338
                     /gene="tswA"
                     /locus_tag="BSU_misc_RNA_14"
                     /product="thiamine pyrophosphate riboswitch"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11470904, 12410317,
                     15862294, 16728979, 16962976, 17307816, 18179415,
                     18776013; Product type n: RNA"
                     /function="16.3: Control"
     gene            1224230..1224338
                     /gene="tswA"
                     /locus_tag="BSU_misc_RNA_14"
     downshifts      1224333
                     /Source="Nicolas_upshifts"
                     /id="D634"
                     /incds=0
                     /nref=20
                     /ntot=84
                     /MaxReadThrough="7.67021"
                     /MaxDrop="5.27759"
                     /score="34.8346124"
                     /energy="-12.5"
                     /TU="U943"
                     /idTUdmin="U941"
                     /TUdmin="-4"
                     /isTUend="TRUE"
     CDS             1224417..1225127
                     /gene="tenA"
                     /locus_tag="BSU_11650"
                     /old_locus_tag="BSU11650"
                     /EC_number="3.5.99.2"
                     /function="4.11: Thiamine"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:15709744, 15858269, 16356850, 17618314, 18054064,
                     24311574"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15709744, 15858269,
                     16356850, 17618314, 18054064, 24311574; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="NP_389047.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11650"
                     /db_xref="EnsemblGenomes-Tr:CAB13022"
                     /db_xref="GOA:P25052"
                     /db_xref="InterPro:IPR004305"
                     /db_xref="InterPro:IPR016084"
                     /db_xref="InterPro:IPR027574"
                     /db_xref="PDB:1TO9"
                     /db_xref="PDB:1TYH"
                     /db_xref="PDB:1YAF"
                     /db_xref="PDB:1YAK"
                     /db_xref="PDB:2QCX"
                     /db_xref="SubtiList:BG10791"
                     /db_xref="UniProtKB/Swiss-Prot:P25052"
                     /translation="MKFSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQD
                     SYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKA
                     FKPSPTAYSYTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCDPGHPIYQKWI
                     GTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRKEGW
                     SDSAIKEVEECGASRHNG*"
     gene            1224417..1225127
                     /gene="tenA"
                     /locus_tag="BSU_11650"
                     /old_locus_tag="BSU11650"
     CDS             1225102..1225719
                     /gene="tenI"
                     /locus_tag="BSU_11660"
                     /old_locus_tag="BSU11660"
                     /EC_number="5.3.99.10"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15709744, 15858269, 16356850, 21534620"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15709744, 15858269,
                     16356850, 21534620; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole tautomerase"
                     /protein_id="NP_389048.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11660"
                     /db_xref="EnsemblGenomes-Tr:CAB13023"
                     /db_xref="GOA:P25053"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR022998"
                     /db_xref="InterPro:IPR036206"
                     /db_xref="PDB:1YAD"
                     /db_xref="PDB:3QH2"
                     /db_xref="SubtiList:BG10792"
                     /db_xref="UniProtKB/Swiss-Prot:P25053"
                     /translation="MELHAITDDSKPVEELARIIITIQNEVDFIHIRERSKSAADILK
                     LLDLIFEGGIDKRKLVMNGRVDIALFSTIHRVQLPSGSFSPKQIRARFPHLHIGRSVH
                     SLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGMTPD
                     RLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKEMRYEKAL*"
     gene            1225102..1225719
                     /gene="tenI"
                     /locus_tag="BSU_11660"
                     /old_locus_tag="BSU11660"
     CDS             1225703..1226812
                     /gene="thiO"
                     /locus_tag="BSU_11670"
                     /old_locus_tag="BSU11670"
                     /EC_number="1.4.3.19"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:9827558, 11744710, 12627963, 15105420, 19751796,
                     26443755"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9827558, 11744710,
                     12627963, 15105420, 19751796, 26443755; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent glycine oxidase"
                     /protein_id="NP_389049.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11670"
                     /db_xref="EnsemblGenomes-Tr:CAB13024"
                     /db_xref="GOA:O31616"
                     /db_xref="InterPro:IPR006076"
                     /db_xref="InterPro:IPR012727"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="PDB:1NG3"
                     /db_xref="PDB:1NG4"
                     /db_xref="PDB:1RYI"
                     /db_xref="PDB:3IF9"
                     /db_xref="SubtiList:BG13147"
                     /db_xref="UniProtKB/Swiss-Prot:O31616"
                     /translation="MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTS
                     AAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSE
                     EDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKA
                     AKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNA
                     FLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLE
                     SVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILL
                     APATGALISDLIMNKEVNQDWLHAFRIDRKEAVQI*"
     gene            1225703..1226812
                     /gene="thiO"
                     /locus_tag="BSU_11670"
                     /old_locus_tag="BSU11670"
     CDS             1226812..1227012
                     /gene="thiS"
                     /locus_tag="BSU_11680"
                     /old_locus_tag="BSU11680"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10939241, 14567704,
                     14757766, 15489164, 22616866, 26443755; Product type c :
                     carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier for synthesis of
                     hydroxyethylthiazole phosphate"
                     /protein_id="NP_389050.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11680"
                     /db_xref="EnsemblGenomes-Tr:CAB13025"
                     /db_xref="GOA:O31617"
                     /db_xref="InterPro:IPR003749"
                     /db_xref="InterPro:IPR010035"
                     /db_xref="InterPro:IPR012675"
                     /db_xref="InterPro:IPR016155"
                     /db_xref="PDB:1TYG"
                     /db_xref="SubtiList:BG13148"
                     /db_xref="UniProtKB/Swiss-Prot:O31617"
                     /translation="MLQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKE
                     RYHEVELCDRDVIEIVHFVGGG*"
     gene            1226812..1227012
                     /gene="thiS"
                     /locus_tag="BSU_11680"
                     /old_locus_tag="BSU11680"
     CDS             1227009..1227779
                     /gene="thiG"
                     /locus_tag="BSU_11690"
                     /old_locus_tag="BSU11690"
                     /EC_number="2.8.1.10"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 12627963, 14567704, 14757766, 15489164,
                     22938038"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 12627963,
                     14567704, 14757766, 15489164, 22938038; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole phosphate synthetase
                     (thiamine biosynthesis)"
                     /protein_id="NP_389051.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11690"
                     /db_xref="EnsemblGenomes-Tr:CAB13026"
                     /db_xref="GOA:O31618"
                     /db_xref="InterPro:IPR008867"
                     /db_xref="InterPro:IPR013785"
                     /db_xref="InterPro:IPR033983"
                     /db_xref="PDB:1TYG"
                     /db_xref="PDB:1XM3"
                     /db_xref="SubtiList:BG13149"
                     /db_xref="UniProtKB/Swiss-Prot:O31618"
                     /translation="MSMLTIGGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFAV
                     RRMNIFEASQPNFLEQLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVI
                     GCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGS
                     GQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVK
                     MARAMKLAVEAGRLSYEAGRIPLKQYGTASSPGEGLPV*"
     gene            1227009..1227779
                     /gene="thiG"
                     /locus_tag="BSU_11690"
                     /old_locus_tag="BSU11690"
     CDS             1227776..1228786
                     /gene="thiF"
                     /locus_tag="BSU_11700"
                     /old_locus_tag="BSU11700"
                     /EC_number="2.7.7.73"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 14567704, 14757766, 15489164, 16388576,
                     26443755"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 14567704,
                     14757766, 15489164, 16388576, 26443755; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate transferase and sulfur transferase
                     (thiamine biosynthesis)"
                     /protein_id="NP_389052.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11700"
                     /db_xref="EnsemblGenomes-Tr:CAB13027"
                     /db_xref="GOA:O31619"
                     /db_xref="InterPro:IPR000594"
                     /db_xref="InterPro:IPR035985"
                     /db_xref="SubtiList:BG13150"
                     /db_xref="UniProtKB/Swiss-Prot:O31619"
                     /translation="MTGRYSRQELFAPIGPSGQKKLKEARAVIIGAGALGTASAEMLV
                     RAGVGSVKIADRDYVEWSNLQRQQLYTEDDVKKEMPKAAAAERRLRSINSDVDVTGLV
                     MDVTAENIFELIRDASIIVDAADNFETRLIVNDAAVKEGIPFLYGACVGSYGLTFTVV
                     PGSTPCLHCLLDALPIGGATCDTAGIISPAVLQVAVFQVTDALKLLTGEECEPVLRSF
                     DLWKNERSEVRAASLKHDACPSCGTKDFPFLSYENQTKAAVLCGRNTVQIRSSITKEA
                     DLEALAGQLRQAGLEVAANPYLISCRSDDMKMVLFRDGRALIHGTNDIARAKSIYHKW
                     IG*"
     gene            1227776..1228786
                     /gene="thiF"
                     /locus_tag="BSU_11700"
                     /old_locus_tag="BSU11700"
     CDS             1228805..1229620
                     /gene="thiD"
                     /locus_tag="BSU_11710"
                     /old_locus_tag="BSU11710"
                     /EC_number="2.7.4.7"
                     /EC_number="2.7.1.49"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 12627963, 14973012, 16952958, 17012797,
                     26443755"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 12627963,
                     14973012, 16952958, 17012797, 26443755; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine kinase,
                     4-amino-5-hydroxymethyl-2-methylpyrimidine and
                     4-amino-5-hydroxymethyl-2-methylpyrimidine pyrophosphate
                     kinase"
                     /protein_id="NP_389053.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11710"
                     /db_xref="EnsemblGenomes-Tr:CAB13028"
                     /db_xref="GOA:O31620"
                     /db_xref="InterPro:IPR004399"
                     /db_xref="InterPro:IPR013749"
                     /db_xref="InterPro:IPR029056"
                     /db_xref="SubtiList:BG13151"
                     /db_xref="UniProtKB/Swiss-Prot:O31620"
                     /translation="MSIYKALTIAGSDSGGGAGIQADIKTFQELDVFGMSAITAVTAQ
                     NTLGVHGVHPLTVETLRQQIDAVAEDLRPDAVKTGMLWNADMIEEVARKIDEYGFNRV
                     IVDPVMIAKGGASLLRDESVATLKELLIPRSYAITPNVPEAETLTGMTISSLDDRKKA
                     AEQLVKMGAQHVIIKGGHQPEDNHITDLLFDGSMFMQITHPYINTKHTHGTGCTFAAA
                     LTAQTAKGDSIHQAFEVAANFVREAVENTLGIGSGHGPTNHFAFKRNSLNTSR*"
     gene            1228805..1229620
                     /gene="thiD"
                     /locus_tag="BSU_11710"
                     /old_locus_tag="BSU11710"
     downshifts      1229594
                     /Source="Nicolas_upshifts"
                     /id="D635"
                     /incds=0
                     /nref=128
                     /ntot=172
                     /MaxReadThrough="3.33485"
                     /MaxDrop="5.0154"
                     /score="3.40314581"
                     /energy="-14.8"
                     /TU="U943"
                     /idTUdmin="U943"
                     /TUdmin="-89"
                     /isTUend="FALSE"
     promotor_-35    1229667..1229673
                     /Source="Nicolas_upshift_promotors"
                     /id="U944"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=2189
                     /SigmaFactorBS="gtgatctcttttgcgtttgctacggtatgcgCTTTTCAtctg
                     gacaaggtTATGATATGATAGGAATTAAgatcaggtactaatactatgtctttattaa
                     a"
                     /listShort="fabI, cotO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1229686..1229705
                     /Source="Nicolas_upshift_promotors"
                     /id="U944"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=2189
                     /SigmaFactorBS="gtgatctcttttgcgtttgctacggtatgcgCTTTTCAtctg
                     gacaaggtTATGATATGATAGGAATTAAgatcaggtactaatactatgtctttattaa
                     a"
                     /listShort="fabI, cotO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1229696
                     /Source="Nicolas_upshifts"
                     /id="U944"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.619380619380619"
                     /psig=1
                     /xcortree=2189
                     /SigmaFactorBS="gtgatctcttttgcgtttgctacggtatgcgCTTTTCAtctg
                     gacaaggtTATGATATGATAGGAATTAAgatcaggtactaatactatgtctttattaa
                     a"
                     /listShort="fabI, cotO"
                     /GFF_Attribute="listLong"
     CDS             1229756..1230532
                     /gene="fabI"
                     /locus_tag="BSU_11720"
                     /old_locus_tag="BSU11720"
                     /EC_number="1.3.1.9"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11007778, 15105103, 21185310, 25355936"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11007778, 15105103,
                     21185310, 25355936; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-acyl carrier protein reductase"
                     /protein_id="NP_389054.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11720"
                     /db_xref="EnsemblGenomes-Tr:CAB13029"
                     /db_xref="GOA:P54616"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR014358"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="PDB:3OIF"
                     /db_xref="PDB:3OIG"
                     /db_xref="SubtiList:BG13152"
                     /db_xref="UniProtKB/Swiss-Prot:P54616"
                     /translation="MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGER
                     LEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEE
                     LVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNV
                     MGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPL
                     RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITAR*"
     gene            1229756..1230532
                     /gene="fabI"
                     /locus_tag="BSU_11720"
                     /old_locus_tag="BSU11720"
     downshifts      1230521
                     /Source="Nicolas_upshifts"
                     /id="D636"
                     /incds=0
                     /nref=229
                     /ntot=313
                     /MaxReadThrough="3.12901"
                     /MaxDrop="6.64182"
                     /score="33.5478109"
                     /energy="-11.8"
                     /TU="U944"
                     /idTUdmin="U944"
                     /TUdmin="-416"
                     /isTUend="FALSE"
     promotor_-35    1230580..1230585
                     /Source="Nicolas_upshift_promotors"
                     /id="U945"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=1095
                     /SigmaFactorBS="tcaagcaatcccgaatagggattgcttttttatttCTTCTGa
                     ttttcagctttctgTCATATAGATAGAATATGAcacaatcggagggatgaagatgtct
                     a"
                     /listShort="cotO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1230601..1230619
                     /Source="Nicolas_upshift_promotors"
                     /id="U945"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=1095
                     /SigmaFactorBS="tcaagcaatcccgaatagggattgcttttttatttCTTCTGa
                     ttttcagctttctgTCATATAGATAGAATATGAcacaatcggagggatgaagatgtct
                     a"
                     /listShort="cotO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1230605
                     /Source="Nicolas_upshifts"
                     /id="U945"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.968031968031968"
                     /psig="0.968031968031968"
                     /xcortree=1095
                     /SigmaFactorBS="tcaagcaatcccgaatagggattgcttttttatttCTTCTGa
                     ttttcagctttctgTCATATAGATAGAATATGAcacaatcggagggatgaagatgtct
                     a"
                     /listShort="cotO"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1230617..1230631)
                     /Source="Nicolas_upshift_promotors"
                     /id="U946"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.001998001998002"
                     /xcortree=1241
                     /SigmaFactorBS="gagcggttttttatccgcgtttcttttcttattaGACATctt
                     catcCCTCCGATTGTGTCAtattctatctatatgacagaaagctgaaaatcagaagaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1230617)
                     /Source="Nicolas_upshifts"
                     /id="U946"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.001998001998002"
                     /xcortree=1241
                     /SigmaFactorBS="gagcggttttttatccgcgtttcttttcttattaGACATctt
                     catcCCTCCGATTGTGTCAtattctatctatatgacagaaagctgaaaatcagaagaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     CDS             1230633..1231316
                     /gene="cotO"
                     /locus_tag="BSU_11730"
                     /old_locus_tag="BSU11730"
                     /function="16.13: Shape"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:16321932"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16321932; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore outer coat protein"
                     /protein_id="NP_389055.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11730"
                     /db_xref="EnsemblGenomes-Tr:CAB13030"
                     /db_xref="GOA:O31622"
                     /db_xref="InterPro:IPR025439"
                     /db_xref="SubtiList:BG13153"
                     /db_xref="UniProtKB/Swiss-Prot:O31622"
                     /translation="MKMSNKKRNADKKPLMYIVQPDYAETTRSSMQEIVIKRKADKPA
                     PPKAEEKPAYHEKQQEEAVAQDVLQEDQKPAAEPVSQQTQEAREPENIKSQEEQKAEP
                     QAVEETVEHEPPKAEKKEEPALEARKPEKEPEAVHSADKAEEKAPPARKVKKPMSKMT
                     IHEKIDFLTKLPHNMPRALCLIEANGRTYRGVIVGRRNDSVLLRTTGNGAPTELAIDD
                     ITSLHPLGF*"
     gene            1230633..1231316
                     /gene="cotO"
                     /locus_tag="BSU_11730"
                     /old_locus_tag="BSU11730"
     promotor_-35    complement(1230639..1230643)
                     /Source="Nicolas_upshift_promotors"
                     /id="U946"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.001998001998002"
                     /xcortree=1241
                     /SigmaFactorBS="gagcggttttttatccgcgtttcttttcttattaGACATctt
                     catcCCTCCGATTGTGTCAtattctatctatatgacagaaagctgaaaatcagaagaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1231311
                     /Source="Nicolas_upshifts"
                     /id="D637"
                     /incds=0
                     /nref=4
                     /ntot=40
                     /MaxReadThrough="3.37645"
                     /MaxDrop="4.6587"
                     /score="18.0229289"
                     /energy="-13.4"
                     /TU="U945"
                     /idTUdmin="U945"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     downshifts      1231399
                     /Source="Nicolas_upshifts"
                     /id="D638"
                     /incds=0
                     /nref=1
                     /ntot=29
                     /MaxReadThrough="2.44926"
                     /MaxDrop="4.55934"
                     /score="18.0229289"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U945"
                     /TUdmin=22
                     /isTUend="TRUE"
     CDS             complement(1231410..1231856)
                     /gene="cotZ"
                     /locus_tag="BSU_11740"
                     /old_locus_tag="BSU11740"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7519271, 8509331, 19933362, 26341943, 27320701"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7519271, 8509331,
                     19933362, 26341943, 27320701; Product type s: structure"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (insoluble fraction, crust
                     layer)"
                     /protein_id="NP_389056.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11740"
                     /db_xref="EnsemblGenomes-Tr:CAB13031"
                     /db_xref="GOA:Q08312"
                     /db_xref="InterPro:IPR019593"
                     /db_xref="SubtiList:BG10499"
                     /db_xref="UniProtKB/Swiss-Prot:Q08312"
                     /translation="MSQKTSSCVREAVENIEDLQNAVEEDCPTGCHSKLLSVSHSLGD
                     TVPFAIFTSKSTPLVAFGNVGELDNGPCFNTVFFRVERVHGSCATLSLLIAFDEHKHI
                     LDFTDKDTVCEVFRLEKTNYCIEVDLDCFCAINCLNPRLINRTHHH*"
     gene            complement(1231410..1231856)
                     /gene="cotZ"
                     /locus_tag="BSU_11740"
                     /old_locus_tag="BSU11740"
     downshifts      complement(1231431)
                     /Source="Nicolas_upshifts"
                     /id="D639"
                     /incds=0
                     /nref=7
                     /ntot=50
                     /MaxReadThrough="8.44444"
                     /MaxDrop="7.17581"
                     /score="2.03943557"
                     /energy="-9.3"
                     /TU="U949"
                     /idTUdmin="U950"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(1231857..1231983)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1249889_1250015_c"
                     /HighExp="S8, S7, S6, BT, S5, B36, G/S, Pyr, B60, SMMPr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigEF"
                     /TUshortPSig="1, 0.993"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S420"
     CDS             complement(1231984..1232472)
                     /gene="cotY"
                     /locus_tag="BSU_11750"
                     /old_locus_tag="BSU11750"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7519271, 8509331, 14766913, 26341943, 26821119"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7519271, 8509331,
                     14766913, 26341943, 26821119; Product type cp: cell
                     process"
                     /codon_start=1
                     /transl_table=11
                     /product="outer spore coat protein (crust layer,
                     insolublefraction)"
                     /protein_id="NP_389057.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11750"
                     /db_xref="EnsemblGenomes-Tr:CAB13032"
                     /db_xref="GOA:Q08311"
                     /db_xref="InterPro:IPR019593"
                     /db_xref="SubtiList:BG10498"
                     /db_xref="UniProtKB/Swiss-Prot:Q08311"
                     /translation="MSCGKTHGRHENCVCDAVEKILAEQEAVEEQCPTGCYTNLLNPT
                     IAGKDTIPFLVFDKKGGLFSTFGNVGGFVDDMQCFESIFFRVEKLCDCCATLSILRPV
                     DVKGDTLSVCHPCDPDFFGLEKTDFCIEVDLGCFCAIQCLSPELVDRTSPHKDKKHHH
                     NG*"
     gene            complement(1231984..1232472)
                     /gene="cotY"
                     /locus_tag="BSU_11750"
                     /old_locus_tag="BSU11750"
     promotor_-35    1232152..1232158
                     /Source="Nicolas_upshift_promotors"
                     /id="U947"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.53046953046953"
                     /psig="0.653346653346653"
                     /xcortree=1630
                     /SigmaFactorBS="agggtggcaaacacttaaggtATCGCCTttgacatcgaccgg
                     GCGTAAAATAGACAGTGTTGcacagcaatcgcataatttttcgacgcggaagaaaatg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1232173..1232192
                     /Source="Nicolas_upshift_promotors"
                     /id="U947"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.53046953046953"
                     /psig="0.653346653346653"
                     /xcortree=1630
                     /SigmaFactorBS="agggtggcaaacacttaaggtATCGCCTttgacatcgaccgg
                     GCGTAAAATAGACAGTGTTGcacagcaatcgcataatttttcgacgcggaagaaaatg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1232191
                     /Source="Nicolas_upshifts"
                     /id="U947"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.53046953046953"
                     /psig="0.653346653346653"
                     /xcortree=1630
                     /SigmaFactorBS="agggtggcaaacacttaaggtATCGCCTttgacatcgaccgg
                     GCGTAAAATAGACAGTGTTGcacagcaatcgcataatttttcgacgcggaagaaaatg
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    1232468..1232472
                     /Source="Nicolas_upshift_promotors"
                     /id="U948"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.002997002997003"
                     /xcortree=1244
                     /SigmaFactorBS="tctcatgccggccatgggtttttccgcagCTCATtgatttca
                     GCTCCTTCTTTATAGggtatttgactttagtccttaacaacatatgtacccgtgcccc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1232481..1232495
                     /Source="Nicolas_upshift_promotors"
                     /id="U948"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.002997002997003"
                     /xcortree=1244
                     /SigmaFactorBS="tctcatgccggccatgggtttttccgcagCTCATtgatttca
                     GCTCCTTCTTTATAGggtatttgactttagtccttaacaacatatgtacccgtgcccc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1232499
                     /Source="Nicolas_upshifts"
                     /id="U948"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.997002997002997"
                     /psig="0.002997002997003"
                     /xcortree=1244
                     /SigmaFactorBS="tctcatgccggccatgggtttttccgcagCTCATtgatttca
                     GCTCCTTCTTTATAGggtatttgactttagtccttaacaacatatgtacccgtgcccc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1232509..1232528)
                     /Source="Nicolas_upshift_promotors"
                     /id="U949"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1280
                     /SigmaFactorBS="tattttccaagcatatgatgaatatatagacgttcACCCACA
                     CCAagtggggcacgggTACATATGTTGTTAAGGACTaaagtcaaataccctataaaga
                     a"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1232526)
                     /Source="Nicolas_upshifts"
                     /id="U949"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1280
                     /SigmaFactorBS="tattttccaagcatatgatgaatatatagacgttcACCCACA
                     CCAagtggggcacgggTACATATGTTGTTAAGGACTaaagtcaaataccctataaaga
                     a"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1232542..1232551)
                     /Source="Nicolas_upshift_promotors"
                     /id="U949"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1280
                     /SigmaFactorBS="tattttccaagcatatgatgaatatatagacgttcACCCACA
                     CCAagtggggcacgggTACATATGTTGTTAAGGACTaaagtcaaataccctataaaga
                     a"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1232558..1232576)
                     /Source="Nicolas_upshift_promotors"
                     /id="U950"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1006
                     /SigmaFactorBS="cttgtcctctaggacctaaaagcagagctaaaaacgctCTGC
                     TTtttcttattttccaaGCATATGATGAATATATAGacgttcacccacaccaagtggg
                     g"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1232575)
                     /Source="Nicolas_upshifts"
                     /id="U950"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1006
                     /SigmaFactorBS="cttgtcctctaggacctaaaagcagagctaaaaacgctCTGC
                     TTtttcttattttccaaGCATATGATGAATATATAGacgttcacccacaccaagtggg
                     g"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1232592..1232597)
                     /Source="Nicolas_upshift_promotors"
                     /id="U950"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.993006993006993"
                     /psig="0.993006993006993"
                     /xcortree=1006
                     /SigmaFactorBS="cttgtcctctaggacctaaaagcagagctaaaaacgctCTGC
                     TTtttcttattttccaaGCATATGATGAATATATAGacgttcacccacaccaagtggg
                     g"
                     /listShort="cotY, S420, cotZ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1232609
                     /Source="Nicolas_upshifts"
                     /id="D640"
                     /incds=0
                     /nref=1
                     /ntot=14
                     /MaxReadThrough="1.28604"
                     /MaxDrop="4.18677"
                     /score="-9.76125107"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U948"
                     /TUdmin=22
                     /isTUend="TRUE"
     CDS             complement(1232624..1233142)
                     /gene="cotX"
                     /locus_tag="BSU_11760"
                     /old_locus_tag="BSU11760"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7519271, 8509331, 10400595, 10788508, 12031481,
                     19304857, 26821119"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7519271, 8509331,
                     10400595, 10788508, 12031481, 19304857, 26821119; Product
                     type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (insoluble fraction)"
                     /protein_id="NP_389058.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11760"
                     /db_xref="EnsemblGenomes-Tr:CAB13033"
                     /db_xref="GOA:Q08313"
                     /db_xref="InterPro:IPR011428"
                     /db_xref="SubtiList:BG10500"
                     /db_xref="UniProtKB/Swiss-Prot:Q08313"
                     /translation="MESRPYSWVALDPDCDHPLDDKEKDKEKHERKCHCDVCCNGNGF
                     FGNDNAFIDQDLAQANLNKQVSDETIIIRDSCDINVTSTDVQAVTSVVTALNAAVVTA
                     TLTSIADGVIAELVAQDLLQLTANKQVNRQKLLIECSRGVNVTTVDADIATLISTATN
                     TLVAILVITLVL*"
     gene            complement(1232624..1233142)
                     /gene="cotX"
                     /locus_tag="BSU_11760"
                     /old_locus_tag="BSU11760"
     downshifts      complement(1232648)
                     /Source="Nicolas_upshifts"
                     /id="D641"
                     /incds=0
                     /nref=76
                     /ntot=102
                     /MaxReadThrough="1.79219"
                     /MaxDrop="8.69761"
                     /score="18.5755652"
                     /energy="-10.4"
                     /TU="U952"
                     /idTUdmin="U952"
                     /TUdmin="-29"
                     /isTUend="FALSE"
     downshifts      1232653
                     /Source="Nicolas_upshifts"
                     /id="D642"
                     /incds=0
                     /nref=1
                     /ntot=8
                     /MaxReadThrough="1.2156"
                     /MaxDrop="3.69222"
                     /score="-9.76125107"
                     /energy="-10.4"
                     /TU="NA"
                     /idTUdmin="U948"
                     /TUdmin=66
                     /isTUend="FALSE"
     S_feature       complement(1233143..1233240)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1251175_1251272_c"
                     /HighExp="S8, S7, S6, BT, B36, G/S, Pyr, S5, B60, SMMPr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.748"
                     /TUlongSig="SigK"
                     /TUlongPSig="0.98"
                     /label="S421"
     CDS             complement(1233241..1233558)
                     /gene="cotW"
                     /locus_tag="BSU_11770"
                     /old_locus_tag="BSU11770"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:8509331, 19304857, 21665972, 25872412"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8509331, 19304857,
                     21665972, 25872412; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (outemost layer)"
                     /protein_id="NP_389059.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11770"
                     /db_xref="EnsemblGenomes-Tr:CAB13034"
                     /db_xref="GOA:Q08310"
                     /db_xref="SubtiList:BG10497"
                     /db_xref="UniProtKB/Swiss-Prot:Q08310"
                     /translation="MSDNDKFKEELAKLPEVDPMTKMLVQNIFSKHGVTKDKMKKVSD
                     EEKEMLLNLVKDLQAKSQALIENQKKKKEEAAAQEQKNTKPLSRREQLIEQIRQRRKN
                     DNN*"
     gene            complement(1233241..1233558)
                     /gene="cotW"
                     /locus_tag="BSU_11770"
                     /old_locus_tag="BSU11770"
     CDS             complement(1233599..1233985)
                     /gene="cotV"
                     /locus_tag="BSU_11780"
                     /old_locus_tag="BSU11780"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7519271, 8509331"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7519271, 8509331; Product
                     type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (insoluble fraction)"
                     /protein_id="NP_389060.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11780"
                     /db_xref="EnsemblGenomes-Tr:CAB13035"
                     /db_xref="GOA:Q08309"
                     /db_xref="InterPro:IPR011428"
                     /db_xref="SubtiList:BG10496"
                     /db_xref="UniProtKB/Swiss-Prot:Q08309"
                     /translation="MSFEEKVESLHPAIFEQLSSEFEQQIEVIDCENITIDTSHITAA
                     LSIQAFVTTMIIVATQLVIADEDLADAVASEILILDSSQIKKRTIIKIINSRNIKITL
                     SADEIITFVQILLQVLNSILSELDVL*"
     gene            complement(1233599..1233985)
                     /gene="cotV"
                     /locus_tag="BSU_11780"
                     /old_locus_tag="BSU11780"
     promotor_-35    1233981..1233985
                     /Source="Nicolas_upshift_promotors"
                     /id="U951"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99100899100899"
                     /psig="0.005994005994006"
                     /xcortree=1245
                     /SigmaFactorBS="ttgctcaaatattgcagggtgcagggattcgactttttcttc
                     aaatGACATaaccttcACTCCTTTCTTATCCatactctatataatgcaaatggggtgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1233993..1234007
                     /Source="Nicolas_upshift_promotors"
                     /id="U951"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99100899100899"
                     /psig="0.005994005994006"
                     /xcortree=1245
                     /SigmaFactorBS="ttgctcaaatattgcagggtgcagggattcgactttttcttc
                     aaatGACATaaccttcACTCCTTTCTTATCCatactctatataatgcaaatggggtgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1233995
                     /Source="Nicolas_upshifts"
                     /id="U951"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.99100899100899"
                     /psig="0.005994005994006"
                     /xcortree=1245
                     /SigmaFactorBS="ttgctcaaatattgcagggtgcagggattcgactttttcttc
                     aaatGACATaaccttcACTCCTTTCTTATCCatactctatataatgcaaatggggtgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1234005..1234024)
                     /Source="Nicolas_upshift_promotors"
                     /id="U952"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.748251748251748"
                     /psig="0.748251748251748"
                     /xcortree=1351
                     /SigmaFactorBS="catgaattgtatcttgtccggcagaaaattggttatttttat
                     taTtCcGctctgcaccccattTGCATTATATAGAGTATGGAtaagaaaggagtgaagg
                     t"
                     /listShort="cotV, cotW, S421, cotX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1234027)
                     /Source="Nicolas_upshifts"
                     /id="U952"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.748251748251748"
                     /psig="0.748251748251748"
                     /xcortree=1351
                     /SigmaFactorBS="catgaattgtatcttgtccggcagaaaattggttatttttat
                     taTtCcGctctgcaccccattTGCATTATATAGAGTATGGAtaagaaaggagtgaagg
                     t"
                     /listShort="cotV, cotW, S421, cotX"
                     /GFF_Attribute="listLong"
     S_feature       complement(1234029..1234533)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1252061_1252565_c"
                     /HighExp="S8, S6, S7, BT, S5, B36, Pyr, C30, G/S, nit"
                     /AntisenseName="yjcA"
                     /AntisenseCor="0.69838474492609404"
                     /AntisenseRegPval="-39.9"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.98"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S422"
     promotor_-35    complement(1234043)
                     /Source="Nicolas_upshift_promotors"
                     /id="U952"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.748251748251748"
                     /psig="0.748251748251748"
                     /xcortree=1351
                     /SigmaFactorBS="catgaattgtatcttgtccggcagaaaattggttatttttat
                     taTtCcGctctgcaccccattTGCATTATATAGAGTATGGAtaagaaaggagtgaagg
                     t"
                     /listShort="cotV, cotW, S421, cotX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1234082..1234087
                     /Source="Nicolas_upshift_promotors"
                     /id="U953"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1132
                     /SigmaFactorBS="aataaaaataaccaattttctgccggacaagatacaaTTCAT
                     GaagaatagggttttgGCATATATGTGAAGGGATCatgattggcaaaggagtgaacga
                     g"
                     /listShort="yjcA, S423"
                     /listLong="yjzK, yjcZ, S424, spoVIF, S425"
                     /label="promotor_-35"
     promotor_-10    1234103..1234121
                     /Source="Nicolas_upshift_promotors"
                     /id="U953"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1132
                     /SigmaFactorBS="aataaaaataaccaattttctgccggacaagatacaaTTCAT
                     GaagaatagggttttgGCATATATGTGAAGGGATCatgattggcaaaggagtgaacga
                     g"
                     /listShort="yjcA, S423"
                     /listLong="yjzK, yjcZ, S424, spoVIF, S425"
                     /label="promotor_-10"
     upshifts        1234105
                     /Source="Nicolas_upshifts"
                     /id="U953"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp=1
                     /psig=1
                     /xcortree=1132
                     /SigmaFactorBS="aataaaaataaccaattttctgccggacaagatacaaTTCAT
                     GaagaatagggttttgGCATATATGTGAAGGGATCatgattggcaaaggagtgaacga
                     g"
                     /listShort="yjcA, S423"
                     /listLong="yjzK, yjcZ, S424, spoVIF, S425"
     CDS             1234145..1234501
                     /gene="yjcA"
                     /locus_tag="BSU_11790"
                     /old_locus_tag="BSU11790"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:14523132, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14523132, 15849754,
                     16850406; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific protein"
                     /protein_id="NP_389061.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11790"
                     /db_xref="EnsemblGenomes-Tr:CAB13036"
                     /db_xref="GOA:O31623"
                     /db_xref="InterPro:IPR010773"
                     /db_xref="SubtiList:BG13154"
                     /db_xref="UniProtKB/Swiss-Prot:O31623"
                     /translation="MVINGLTIVLLSLAVFRLARLLVFDTIMAPLRSLFHEEKEEKDA
                     DGNIETYIVIKGTGVRAFIGELLSCYWCTGVWCAGFLILCQAVIPQAAQWLILLLAIA
                     GLAGIIETLVSKWLQE*"
     gene            1234145..1234501
                     /gene="yjcA"
                     /locus_tag="BSU_11790"
                     /old_locus_tag="BSU11790"
     promotor_-35    1234511..1234520
                     /Source="Nicolas_upshift_promotors"
                     /id="U955"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1353
                     /SigmaFactorBS="gctcgtatcaaaatggctgcaagaataaggcgttaccACCAG
                     CAACTttctgtcagaataCGCATAAAGTAGCATATAtgacataaggaaaggaagggga
                     c"
                     /listShort="S423, yjzK"
                     /listLong="yjcZ, S424, spoVIF, S425"
                     /label="promotor_-35"
     promotor_-10    complement(1234518..1234537)
                     /Source="Nicolas_upshift_promotors"
                     /id="U954"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.98001998001998"
                     /psig="0.98001998001998"
                     /xcortree=1256
                     /SigmaFactorBS="atgatgctgattcatttttgtccccttcctttcCTTATGTCA
                     TatatgctactttaTGCGTATTCTGACAGAAAGTtgctggtggtaacgccttattctt
                     g"
                     /listShort="S422"
                     /listLong="cotV, cotW, S421, cotX"
                     /label="promotor_-10"
     CDS             complement(1234526..1234759)
                     /locus_tag="BSU_11798"
                     /old_locus_tag="BSU11798"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein remnant"
                     /db_xref="PSEUDO:SOX90549.1"
                     /translation="MLSETASLKKQKTGVLRFLCQAIEAFSFYFRTRSLSFLSFLIDT
                     MNLYMEIFGKVYDADSFLSPSFPYVIYATLCVF*"
     gene            complement(1234526..1234759)
                     /locus_tag="BSU_11798"
                     /old_locus_tag="BSU11798"
                     /pseudo
     upshifts        complement(1234533)
                     /Source="Nicolas_upshifts"
                     /id="U954"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.98001998001998"
                     /psig="0.98001998001998"
                     /xcortree=1256
                     /SigmaFactorBS="atgatgctgattcatttttgtccccttcctttcCTTATGTCA
                     TatatgctactttaTGCGTATTCTGACAGAAAGTtgctggtggtaacgccttattctt
                     g"
                     /listShort="S422"
                     /listLong="cotV, cotW, S421, cotX"
     S_feature       1234534..1234720
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1252566_1252752"
                     /HighExp="S8, S6, S7, BT, S5, B36, S4, S3, G/S, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.26970100000000002"
                     /TUshortSig="SigK, SigEF"
                     /TUshortPSig="0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S423"
     promotor_-10    1234534..1234551
                     /Source="Nicolas_upshift_promotors"
                     /id="U955"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1353
                     /SigmaFactorBS="gctcgtatcaaaatggctgcaagaataaggcgttaccACCAG
                     CAACTttctgtcagaataCGCATAAAGTAGCATATAtgacataaggaaaggaagggga
                     c"
                     /listShort="S423, yjzK"
                     /listLong="yjcZ, S424, spoVIF, S425"
                     /label="promotor_-10"
     upshifts        1234534
                     /Source="Nicolas_upshifts"
                     /id="U955"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1353
                     /SigmaFactorBS="gctcgtatcaaaatggctgcaagaataaggcgttaccACCAG
                     CAACTttctgtcagaataCGCATAAAGTAGCATATAtgacataaggaaaggaagggga
                     c"
                     /listShort="S423, yjzK"
                     /listLong="yjcZ, S424, spoVIF, S425"
     promotor_-35    complement(1234551..1234560)
                     /Source="Nicolas_upshift_promotors"
                     /id="U954"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.98001998001998"
                     /psig="0.98001998001998"
                     /xcortree=1256
                     /SigmaFactorBS="atgatgctgattcatttttgtccccttcctttcCTTATGTCA
                     TatatgctactttaTGCGTATTCTGACAGAAAGTtgctggtggtaacgccttattctt
                     g"
                     /listShort="S422"
                     /listLong="cotV, cotW, S421, cotX"
                     /label="promotor_-35"
     downshifts      complement(1234577)
                     /Source="Nicolas_upshifts"
                     /id="D643"
                     /incds=0
                     /nref=2
                     /ntot=13
                     /MaxReadThrough="3.12564"
                     /MaxDrop="4.58782"
                     /score="-6.14331629"
                     /energy="-6.8"
                     /TU="NA"
                     /idTUdmin="U954"
                     /TUdmin="-528"
                     /isTUend="FALSE"
     downshifts      1234677
                     /Source="Nicolas_upshifts"
                     /id="D644"
                     /incds=0
                     /nref=3
                     /ntot=32
                     /MaxReadThrough="5.73879"
                     /MaxDrop="3.6919"
                     /score="33.8150878"
                     /energy="-6.8"
                     /TU="U953,U955"
                     /idTUdmin="U953"
                     /TUdmin="-66"
                     /isTUend="FALSE"
     upshifts        complement(1234731)
                     /Source="Nicolas_upshifts"
                     /id="U956"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.284715284715285"
                     /psig="0.032967032967033"
                     /xcortree=768
                     /SigmaFactorBS="ctcattcacttttatccccccgcttatgatatatgctgagcg
                     agaCCGCCTCGttaaaaaaacaaaaaaccggagttctccggtttctttgccaggctat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    1234732..1234741
                     /Source="Nicolas_upshift_promotors"
                     /id="U957"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1288
                     /SigmaFactorBS="gaaaccggagaactccggttttttgttTTTTTAACGAggcgg
                     tctcgctcAGCATATATCATAAGCGGGGggataaaagtgaatgagtttgaaaaatgga
                     t"
                     /listShort="yjzK, yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(1234739..1234746)
                     /Source="Nicolas_upshift_promotors"
                     /id="U956"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.284715284715285"
                     /psig="0.032967032967033"
                     /xcortree=768
                     /SigmaFactorBS="ctcattcacttttatccccccgcttatgatatatgctgagcg
                     agaCCGCCTCGttaaaaaaacaaaaaaccggagttctccggtttctttgccaggctat
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     promotor_-10    1234755..1234774
                     /Source="Nicolas_upshift_promotors"
                     /id="U957"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1288
                     /SigmaFactorBS="gaaaccggagaactccggttttttgttTTTTTAACGAggcgg
                     tctcgctcAGCATATATCATAAGCGGGGggataaaagtgaatgagtttgaaaaatgga
                     t"
                     /listShort="yjzK, yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1234765
                     /Source="Nicolas_upshifts"
                     /id="U957"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.971028971028971"
                     /psig="0.971028971028971"
                     /xcortree=1288
                     /SigmaFactorBS="gaaaccggagaactccggttttttgttTTTTTAACGAggcgg
                     tctcgctcAGCATATATCATAAGCGGGGggataaaagtgaatgagtttgaaaaatgga
                     t"
                     /listShort="yjzK, yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
     CDS             1234783..1234989
                     /gene="yjzK"
                     /locus_tag="BSU_11799"
                     /old_locus_tag="BSU11799"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097704.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11799"
                     /db_xref="EnsemblGenomes-Tr:CAX52594"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y7"
                     /translation="MNEFEKWIEGRYEPHEQKQKEHEDTMGSIRKDLDAFDKAGLEFE
                     DEIEELAEKTEALLKKHQAQYDQS*"
     gene            1234783..1234989
                     /gene="yjzK"
                     /locus_tag="BSU_11799"
                     /old_locus_tag="BSU11799"
     CDS             1234826..1235041
                     /gene="yjcB"
                     /locus_tag="BSU_11800"
                     /old_locus_tag="BSU11800"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:14523132"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14523132; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific protein"
                     /protein_id="YP_009513951.1"
                     /translation="MNKSKKSMKTRWAVSEKTWMHLIKPVWNLKMRLKSWLKKRRPYL
                     KNIKLNMINRKSANALCEYPSRSQQLT*"
     gene            1234826..1235041
                     /gene="yjcB"
                     /locus_tag="BSU_11800"
                     /old_locus_tag="BSU11800"
     promotor_-35    1235013..1235022
                     /Source="Nicolas_upshift_promotors"
                     /id="U958"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1409
                     /SigmaFactorBS="tcaatcgtaaatccgcaaacgccctatgcgaatATCCAAGCC
                     GatcccagcagctCACATAGTGTATAGAGAGTAaaggaggtgcttatctatgggcttt
                     g"
                     /listShort="yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1235035..1235054
                     /Source="Nicolas_upshift_promotors"
                     /id="U958"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1409
                     /SigmaFactorBS="tcaatcgtaaatccgcaaacgccctatgcgaatATCCAAGCC
                     GatcccagcagctCACATAGTGTATAGAGAGTAaaggaggtgcttatctatgggcttt
                     g"
                     /listShort="yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1235040
                     /Source="Nicolas_upshifts"
                     /id="U958"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1409
                     /SigmaFactorBS="tcaatcgtaaatccgcaaacgccctatgcgaatATCCAAGCC
                     GatcccagcagctCACATAGTGTATAGAGAGTAaaggaggtgcttatctatgggcttt
                     g"
                     /listShort="yjcZ, S424, spoVIF, S425"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1235047..1235061)
                     /Source="Nicolas_upshift_promotors"
                     /id="U959"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=690
                     /SigmaFactorBS="gccataacagccgccgccgtagccgccgccgaatccgtatcc
                     aaagCCCATagataagcaCCTCCTTTACTCTCTatacactatgtgagctgctgggatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1235061)
                     /Source="Nicolas_upshifts"
                     /id="U959"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=690
                     /SigmaFactorBS="gccataacagccgccgccgtagccgccgccgaatccgtatcc
                     aaagCCCATagataagcaCCTCCTTTACTCTCTatacactatgtgagctgctgggatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1235071..1235075)
                     /Source="Nicolas_upshift_promotors"
                     /id="U959"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.999000999001"
                     /psig=0
                     /xcortree=690
                     /SigmaFactorBS="gccataacagccgccgccgtagccgccgccgaatccgtatcc
                     aaagCCCATagataagcaCCTCCTTTACTCTCTatacactatgtgagctgctgggatc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1235071..1235220
                     /gene="yjcZ"
                     /locus_tag="BSU_11809"
                     /old_locus_tag="BSU11809"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14523132, 20156992,
                     21670523; Product type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative type I toxin"
                     /protein_id="YP_003097705.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11809"
                     /db_xref="EnsemblGenomes-Tr:CAX52595"
                     /db_xref="GOA:C0H3Y8"
                     /db_xref="InterPro:IPR010070"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y8"
                     /translation="MGFGYGFGGGYGGGCYGGYAGGYGGGYGSTFVLLVVLFILLIIV
                     GASFF*"
     gene            1235071..1235220
                     /gene="yjcZ"
                     /locus_tag="BSU_11809"
                     /old_locus_tag="BSU11809"
     downshifts      1235161
                     /Source="Nicolas_upshifts"
                     /id="D645"
                     /incds=0
                     /nref=4
                     /ntot=29
                     /MaxReadThrough="8.16203"
                     /MaxDrop="4.48861"
                     /score="1.53429015"
                     /energy="-22.4"
                     /TU="U957,U958"
                     /idTUdmin="U955"
                     /TUdmin=110
                     /isTUend="FALSE"
     S_feature       1235221..1235352
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1253253_1253384"
                     /HighExp="S7, BT, S8, B36, S6, G/S, Pyr, B60, S5, LoTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK, SigK"
                     /TUshortPSig="1, 0.971"
                     /TUlongSig="SigK, SigEF"
                     /TUlongPSig="0.999, 1"
                     /label="S424"
     CDS             1235353..1235607
                     /gene="spoVIF"
                     /locus_tag="BSU_11810"
                     /old_locus_tag="BSU11810"
                     /function="16.8: Protect"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:14523132, 14702409, 20435725"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14523132, 14702409,
                     20435725; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation-specific protein needed for heat
                     resistance"
                     /protein_id="NP_389063.2"
                     /db_xref="EnsemblGenomes-Gn:BSU11810"
                     /db_xref="EnsemblGenomes-Tr:CAB13038"
                     /db_xref="GOA:O31625"
                     /db_xref="InterPro:IPR025942"
                     /db_xref="SubtiList:BG13156"
                     /db_xref="UniProtKB/Swiss-Prot:O31625"
                     /translation="MDNQFFKNIEKKTGVKMQDVMNLAGSLQNANFKDENTVRSVINR
                     VAQMANRRVPKELEDKIVESITSGKEKLDFGTISKMMDNK*"
     gene            1235353..1235607
                     /gene="spoVIF"
                     /locus_tag="BSU_11810"
                     /old_locus_tag="BSU11810"
     downshifts      1235592
                     /Source="Nicolas_upshifts"
                     /id="D646"
                     /incds=0
                     /nref=40
                     /ntot=79
                     /MaxReadThrough="5.66609"
                     /MaxDrop="5.8411"
                     /score="7.68851688"
                     /energy="-10.7"
                     /TU="U957,U958"
                     /idTUdmin="U955"
                     /TUdmin=541
                     /isTUend="FALSE"
     downshifts      complement(1235611)
                     /Source="Nicolas_upshifts"
                     /id="D647"
                     /incds=0
                     /nref=3
                     /ntot=9
                     /MaxReadThrough="3.12148"
                     /MaxDrop="4.34051"
                     /score="24.4726468"
                     /energy="-14.3"
                     /TU="NA"
                     /idTUdmin="U961"
                     /TUdmin=88
                     /isTUend="FALSE"
     S_feature       1235637..1236737
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1253669_1254769"
                     /HighExp="S8, S6, S7, B36, S5, C30, BT, dia15, Diami,
                     H2O2"
                     /AntisenseName="yjcD"
                     /AntisenseCor="-0.210610370451118"
                     /AntisenseRegPval="-3.3"
                     /CDS_PredictionProba="0.18426200000000001"
                     /TUshortSig="SigK, SigK"
                     /TUshortPSig="1, 0.971"
                     /TUlongSig="SigK, SigEF"
                     /TUlongPSig="0.999, 1"
                     /label="S425"
     CDS             complement(1235681..1237960)
                     /gene="yjcD"
                     /locus_tag="BSU_11820"
                     /old_locus_tag="BSU11820"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 11544244, 16014871,
                     17114254, 22933559; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ATP-dependent DNA helicase
                     (sporulationassociated)"
                     /protein_id="NP_389064.3"
                     /db_xref="EnsemblGenomes-Gn:BSU11820"
                     /db_xref="EnsemblGenomes-Tr:CAB13039"
                     /db_xref="GOA:O31626"
                     /db_xref="InterPro:IPR000212"
                     /db_xref="InterPro:IPR014016"
                     /db_xref="InterPro:IPR014017"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR034739"
                     /db_xref="SubtiList:BG13157"
                     /db_xref="UniProtKB/Swiss-Prot:O31626"
                     /translation="MKCARLNDRIIHLHTYSREHYQFLFEEGIKGHLFCSHCGKPVLL
                     RLNIADPPEFIHRQPGDFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSP
                     AVTEWHRPRSIKPGTPFVPKTIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSG
                     KTRVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKERMANQYGLQPAKVRRIVTGT
                     FHSLFYKILYHSNSAKWNGEHLLKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGF
                     WKNTYVPNERIPLKDEWEKQVYRLYEHYERQKKEHSQFDFDDMASACYELFIERPDLL
                     EQYQSRFTYILIDEFQDINPVQYKIMQMLASPEQNLCCVGDDDQSIYAFRGSNPSFIL
                     DFQKDYPGAKTIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDIQVPVLFYP
                     YDEEEEATMVVSDIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQ
                     SFYSRRIVRQILAYLYASQNEDDTEAIKHLLPALFLKQSALNTLKALSITEDCTMIKA
                     LAKLPDLKPFQLDKIKKIVPFFASLRTMKPVEAITFAEGKMGFSEYLKKRGNEGNKLE
                     KGSDDLRDIKVVAKKFKTIPDFLAHVDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTV
                     YVLGTVDGSIPHDFSLETARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTA
                     NRSRFLYPLLQKARQPLHH*"
     gene            complement(1235681..1237960)
                     /gene="yjcD"
                     /locus_tag="BSU_11820"
                     /old_locus_tag="BSU11820"
     downshifts      complement(1235699)
                     /Source="Nicolas_upshifts"
                     /id="D648"
                     /incds=0
                     /nref=61
                     /ntot=171
                     /MaxReadThrough="2.59869"
                     /MaxDrop="4.36061"
                     /score="24.4726468"
                     /energy="-14.3"
                     /TU="NA"
                     /idTUdmin="U961"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(1237835..1238009)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1255867_1256041_c"
                     /HighExp="G180, G135, G150, H2O2, Paraq, Oxctl, LBGexp,
                     dia15, dia0, MG 15"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S426"
     promotor_-35    1237888..1237896
                     /Source="Nicolas_upshift_promotors"
                     /id="U960"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=958
                     /SigmaFactorBS="tgagaacaaaataaatgtccttttattccctcttcaaAGAGG
                     AATTgataatgttcTCTCGAATATGTATGTAAAtgtatgattctatcattcagtcggg
                     c"
                     /listShort="S427, yjzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1237907..1237925
                     /Source="Nicolas_upshift_promotors"
                     /id="U960"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=958
                     /SigmaFactorBS="tgagaacaaaataaatgtccttttattccctcttcaaAGAGG
                     AATTgataatgttcTCTCGAATATGTATGTAAAtgtatgattctatcattcagtcggg
                     c"
                     /listShort="S427, yjzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1237911..1238046
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1255943_1256078"
                     /HighExp="S4, S5, S3, S6, S7, S8, M9-stat, T4.0H, T3.0H,
                     S2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH"
                     /TUshortPSig="0.868"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S427"
     upshifts        1237911
                     /Source="Nicolas_upshifts"
                     /id="U960"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=958
                     /SigmaFactorBS="tgagaacaaaataaatgtccttttattccctcttcaaAGAGG
                     AATTgataatgttcTCTCGAATATGTATGTAAAtgtatgattctatcattcagtcggg
                     c"
                     /listShort="S427, yjzE"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1237997..1238016)
                     /Source="Nicolas_upshift_promotors"
                     /id="U961"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig=1
                     /xcortree=2545
                     /SigmaFactorBS="cacccctctgctgtctcttttcccttaaacttACTTTttgaa
                     acacatttctTTTGATATGATAGTCATTGTctgtaatgaacaccttttgattgggagg
                     a"
                     /listShort="S426, yjcD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1238008)
                     /Source="Nicolas_upshifts"
                     /id="U961"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig=1
                     /xcortree=2545
                     /SigmaFactorBS="cacccctctgctgtctcttttcccttaaacttACTTTttgaa
                     acacatttctTTTGATATGATAGTCATTGTctgtaatgaacaccttttgattgggagg
                     a"
                     /listShort="S426, yjcD"
                     /GFF_Attribute="listLong"
     promotor_-35    1238024..1238030
                     /Source="Nicolas_upshift_promotors"
                     /id="U962"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=197
                     /SigmaFactorBS="tcattacagacaatgactatcatatcaaaagaaatgTGTTTC
                     AaaaagtaagtttaaGGGAAAAGAGACAGCAGAGgggtgggtattgtatgatatatgc
                     a"
                     /listShort="yjzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(1238032..1238036)
                     /Source="Nicolas_upshift_promotors"
                     /id="U961"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.987012987012987"
                     /psig=1
                     /xcortree=2545
                     /SigmaFactorBS="cacccctctgctgtctcttttcccttaaacttACTTTttgaa
                     acacatttctTTTGATATGATAGTCATTGTctgtaatgaacaccttttgattgggagg
                     a"
                     /listShort="S426, yjcD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1238045..1238063
                     /Source="Nicolas_upshift_promotors"
                     /id="U962"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=197
                     /SigmaFactorBS="tcattacagacaatgactatcatatcaaaagaaatgTGTTTC
                     AaaaagtaagtttaaGGGAAAAGAGACAGCAGAGgggtgggtattgtatgatatatgc
                     a"
                     /listShort="yjzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1238048
                     /Source="Nicolas_upshifts"
                     /id="U962"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=197
                     /SigmaFactorBS="tcattacagacaatgactatcatatcaaaagaaatgTGTTTC
                     AaaaagtaagtttaaGGGAAAAGAGACAGCAGAGgggtgggtattgtatgatatatgc
                     a"
                     /listShort="yjzE"
                     /GFF_Attribute="listLong"
     CDS             1238077..1238331
                     /gene="yjzE"
                     /locus_tag="BSU_11839"
                     /old_locus_tag="BSU11839"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 11976315,
                     23155385"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097706.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11839"
                     /db_xref="EnsemblGenomes-Tr:CAX52596"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Y9"
                     /translation="MIYAGQIQNQQYAQYANRTIGHKQDYAGTEKISYVPFQRVYKEL
                     EKQQENQTAAERKVNEMKRKRSLYKRLREKGMGTYINRYV*"
     gene            1238077..1238331
                     /gene="yjzE"
                     /locus_tag="BSU_11839"
                     /old_locus_tag="BSU11839"
     downshifts      1238307
                     /Source="Nicolas_upshifts"
                     /id="D649"
                     /incds=0
                     /nref=101
                     /ntot=248
                     /MaxReadThrough="3.69482"
                     /MaxDrop="7.80206"
                     /score="5.37568515"
                     /energy="-6.1"
                     /TU="U962"
                     /idTUdmin="U960"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(1238397)
                     /Source="Nicolas_upshifts"
                     /id="D650"
                     /incds=0
                     /nref=78
                     /ntot=283
                     /MaxReadThrough="3.21062"
                     /MaxDrop="7.8562"
                     /score="-4.05705392"
                     /energy="-6.1"
                     /TU="U963"
                     /idTUdmin="U963"
                     /TUdmin="-36"
                     /isTUend="FALSE"
     CDS             complement(1238404..1238826)
                     /gene="yjcF"
                     /locus_tag="BSU_11840"
                     /old_locus_tag="BSU11840"
                     /EC_number="2.3.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_389066.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11840"
                     /db_xref="EnsemblGenomes-Tr:CAB13041"
                     /db_xref="GOA:O31628"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="PDB:1Q2Y"
                     /db_xref="SubtiList:BG13159"
                     /db_xref="UniProtKB/Swiss-Prot:O31628"
                     /translation="MKAVIAKNEEQLKDAFYVREEVFVKEQNVPAEEEIDELENESEH
                     IVVYDGEKPVGAGRWRMKDGYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGASGF
                     ILNAQTQAVPFYKKHGYRVLSEKEFLDAGIPHLQMMKD*"
     gene            complement(1238404..1238826)
                     /gene="yjcF"
                     /locus_tag="BSU_11840"
                     /old_locus_tag="BSU11840"
     CDS             complement(1238830..1239345)
                     /gene="yjcG"
                     /locus_tag="BSU_11850"
                     /old_locus_tag="BSU11850"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12466548, 16511078,
                     17012785, 18473364, 25643072; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative RNA ligase or phosphoesterase"
                     /protein_id="NP_389067.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11850"
                     /db_xref="EnsemblGenomes-Tr:CAB13042"
                     /db_xref="GOA:O31629"
                     /db_xref="InterPro:IPR009097"
                     /db_xref="InterPro:IPR022932"
                     /db_xref="PDB:2D4G"
                     /db_xref="SubtiList:BG13160"
                     /db_xref="UniProtKB/Swiss-Prot:O31629"
                     /translation="MKYGIVLFPSKKLQDLANSYRKRYDPSYSLIPPHLTLRASFECA
                     EEKADQLVSHLRNIAKESHPLVLKMTKYSSFAPVNNVIYIKAEPTEELKTLNEKLYTG
                     VLAGEQEYNFVPHVTVGQNLSDDEHSDVLGQLKMQEVSHEEIVDRFHLLYQLENGSWT
                     VYETFLLGRGE*"
     gene            complement(1238830..1239345)
                     /gene="yjcG"
                     /locus_tag="BSU_11850"
                     /old_locus_tag="BSU11850"
     CDS             complement(1239382..1240104)
                     /gene="yjcH"
                     /locus_tag="BSU_11860"
                     /old_locus_tag="BSU11860"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 20941576; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative stress-related hydrolase"
                     /protein_id="NP_389068.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11860"
                     /db_xref="EnsemblGenomes-Tr:CAB13043"
                     /db_xref="InterPro:IPR000801"
                     /db_xref="InterPro:IPR029058"
                     /db_xref="SubtiList:BG13161"
                     /db_xref="UniProtKB/Swiss-Prot:O31630"
                     /translation="MAPKNGTVQEKKFFSKELNEEMTLLVYLPSNYSPLYKYHVIIAQ
                     DGHDYFRLGRIGRQVEELLSKREIDRSIIIGVPYKDVKERRNTYHPEGSKFSAYKRFI
                     AHELVPFADDEYPTYQIGYGRTLIGDSLGATVSLMTALDYPNMFGNIIMQSPYVDKHV
                     LEAVKQSDDIKHLSIYHQIGTKETDVHTTDGNILDFTEPNRELKQLLEKKLSDYDFEP
                     FDGDHKWTYWQPLITPALKKML*"
     gene            complement(1239382..1240104)
                     /gene="yjcH"
                     /locus_tag="BSU_11860"
                     /old_locus_tag="BSU11860"
     misc_feature    complement(1240143..1240162)
                     /Source="Nicolas_upshift_promotors"
                     /id="U963"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2938
                     /SigmaFactorBS="tttatttcaacacttttttcttcgtgtgccgaaccgtttaaa
                     gagagaaatttctaataattCATGGTACAATAATTGAAAAtgcaagaaagtatagtga
                     t"
                     /listShort="yjcH, yjcG, yjcF"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1240164)
                     /Source="Nicolas_upshifts"
                     /id="U963"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.999000999001"
                     /psig=1
                     /xcortree=2938
                     /SigmaFactorBS="tttatttcaacacttttttcttcgtgtgccgaaccgtttaaa
                     gagagaaatttctaataattCATGGTACAATAATTGAAAAtgcaagaaagtatagtga
                     t"
                     /listShort="yjcH, yjcG, yjcF"
                     /GFF_Attribute="listLong"
     promotor_-35    1240213..1240220
                     /Source="Nicolas_upshift_promotors"
                     /id="U964"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2887
                     /SigmaFactorBS="tctctttaaacggttcggcacacgaagaaaaaagTGTTGAAA
                     taaactgtgaattgCGCTAATATAAAACAATCAGaaaattgaaatcgatatttcttat
                     c"
                     /listShort="NA, metI, metC, S428"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1240235..1240254
                     /Source="Nicolas_upshift_promotors"
                     /id="U964"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2887
                     /SigmaFactorBS="tctctttaaacggttcggcacacgaagaaaaaagTGTTGAAA
                     taaactgtgaattgCGCTAATATAAAACAATCAGaaaattgaaatcgatatttcttat
                     c"
                     /listShort="NA, metI, metC, S428"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1240239
                     /Source="Nicolas_upshifts"
                     /id="U964"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.986013986013986"
                     /psig=1
                     /xcortree=2887
                     /SigmaFactorBS="tctctttaaacggttcggcacacgaagaaaaaagTGTTGAAA
                     taaactgtgaattgCGCTAATATAAAACAATCAGaaaattgaaatcgatatttcttat
                     c"
                     /listShort="NA, metI, metC, S428"
                     /GFF_Attribute="listLong"
     misc_RNA        1240272..1240392
                     /gene="mswA"
                     /locus_tag="BSU_misc_RNA_15"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 17381305, 18039762"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 17381305, 18039762; Product type n: RNA"
                     /function="16.3: Control"
     gene            1240272..1240392
                     /gene="mswA"
                     /locus_tag="BSU_misc_RNA_15"
     downshifts      1240397
                     /Source="Nicolas_upshifts"
                     /id="D651"
                     /incds=0
                     /nref=8
                     /ntot=59
                     /MaxReadThrough="7.71668"
                     /MaxDrop="5.0477"
                     /score="31.1477774"
                     /energy="-15.2"
                     /TU="U964"
                     /idTUdmin="U962"
                     /TUdmin=2024
                     /isTUend="FALSE"
     CDS             1240460..1241581
                     /gene="metI"
                     /locus_tag="BSU_11870"
                     /old_locus_tag="BSU11870"
                     /EC_number="2.5.1.49"
                     /EC_number="2.5.1.48"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 11832514, 22938038"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 11832514,
                     22938038; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase and
                     O-acetylhomoserine thiolyase"
                     /protein_id="NP_389069.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11870"
                     /db_xref="EnsemblGenomes-Tr:CAB13044"
                     /db_xref="GOA:O31631"
                     /db_xref="InterPro:IPR000277"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG13162"
                     /db_xref="UniProtKB/Swiss-Prot:O31631"
                     /translation="MSQHVETKLAQIGNRSDEVTGTVSAPIYLSTAYRHRGIGESTGF
                     DYVRTKNPTRQLVEDAIANLENGARGLAFSSGMAAIQTIMALFKSGDELIVSSDLYGG
                     TYRLFENEWKKYGLTFHYDDFSDEDCLRSKITPNTKAVFVETPTNPLMQEADIEHIAR
                     ITKEHGLLLIVDNTFYTPVLQRPLELGADIVIHSATKYLGGHNDLLAGLVVVKDERLG
                     EEMFQHQNAIGAVLPPFDSWLLMRGMKTLSLRMRQHQANAQELAAFLEEQEEISDVLY
                     PGKGGMLSFRLQKEEWVNPFLKALKTICFAESLGGVESFITYPATQTHMDIPEEIRIA
                     NGVCNRLLRFSVGIEHAEDLKEDLKQALCQVKEGAVSFE*"
     gene            1240460..1241581
                     /gene="metI"
                     /locus_tag="BSU_11870"
                     /old_locus_tag="BSU11870"
     CDS             1241574..1242746
                     /gene="metC"
                     /locus_tag="BSU_11880"
                     /old_locus_tag="BSU11880"
                     /EC_number="4.4.1.8"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10939241, 11832514, 11948165, 15760717"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10939241, 11832514,
                     11948165, 15760717; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="NP_389070.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11880"
                     /db_xref="EnsemblGenomes-Tr:CAB13045"
                     /db_xref="GOA:O31632"
                     /db_xref="InterPro:IPR000277"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG13163"
                     /db_xref="UniProtKB/Swiss-Prot:O31632"
                     /translation="MSKHNWTLETQLVHNPFKTDGGTGAVSVPIQHASTFHQSSFEEF
                     GAYDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAISTAFLLLSQGDHVLVTEDV
                     YGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNTKVIYMETPSNPTLGITDIKA
                     VVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLSGHSDVLSGLAAVKDE
                     ELGKQLYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEKASQTAQRLAEFFQKHPAVKR
                     VYYPGLADHPGAETHKSQSTGAGAVLSFELESKEAVKKLVENVSLPVFAVSLGAVESI
                     LSYPATMSHAAMPKEEREKRGITDGLLRLSVGVEHADDLEHDFEQALKEIAPVSVR*"
     gene            1241574..1242746
                     /gene="metC"
                     /locus_tag="BSU_11880"
                     /old_locus_tag="BSU11880"
     downshifts      1242729
                     /Source="Nicolas_upshifts"
                     /id="D652"
                     /incds=0
                     /nref=108
                     /ntot=205
                     /MaxReadThrough="4.73188"
                     /MaxDrop="5.54268"
                     /score="4.00424187"
                     /energy="-9.2"
                     /TU="U964"
                     /idTUdmin="U964"
                     /TUdmin="-1474"
                     /isTUend="FALSE"
     misc_feature    1242763..1242781
                     /Source="Nicolas_upshift_promotors"
                     /id="U965"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.671328671328671"
                     /psig="0.671328671328671"
                     /xcortree=2911
                     /SigmaFactorBS="gctgaaagaaattgctccagtttcggttcgttaaaaaagaag
                     ccggggatAGTCCGGCTTCTTTTATTAttgttcgtcatcaggattcagaatcgcgagg
                     a"
                     /listShort="S428"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1242773
                     /Source="Nicolas_upshifts"
                     /id="U965"
                     /multdbtbs="-"
                     /comp="M18"
                     /sig="SigL"
                     /pcomp="0.671328671328671"
                     /psig="0.671328671328671"
                     /xcortree=2911
                     /SigmaFactorBS="gctgaaagaaattgctccagtttcggttcgttaaaaaagaag
                     ccggggatAGTCCGGCTTCTTTTATTAttgttcgtcatcaggattcagaatcgcgagg
                     a"
                     /listShort="S428"
                     /GFF_Attribute="listLong"
     S_feature       1242774..1244303
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1260806_1262335"
                     /HighExp="MG 5, MG t5, MG 10, BMM, GM 25, MG 15, Glu, GM
                     15, GM 45, GM 10"
                     /AntisenseName="yjcK"
                     /AntisenseCor="0.123731990206979"
                     /AntisenseRegPval="-1.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigL, SigA"
                     /TUshortPSig="0.671, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S428"
     CDS             complement(1242779..1243324)
                     /gene="yjcK"
                     /locus_tag="BSU_11890"
                     /old_locus_tag="BSU11890"
                     /EC_number="2.3.1.267"
                     /function="16.6: Maintain"
                     /function="16.2: Construct biomass (Anabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 2828880; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ribosomal-protein-alanine
                     N-acetyltransferase"
                     /protein_id="NP_389071.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11890"
                     /db_xref="EnsemblGenomes-Tr:CAB13046"
                     /db_xref="GOA:O31633"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13164"
                     /db_xref="UniProtKB/Swiss-Prot:O31633"
                     /translation="MLKGKTIYVRPLEVTDAEENLGLQSENRDFFEQFSMIRADDYYT
                     VEGQRKRITEYQERLEKDEEYHFGIFTASDDRLIGTVSLFQIIRGALQTAFIGYFLDK
                     AHNGKGIMTEAVRLVVDYAFHELKLHRIEAGVMPRNLGSMRVLEKAGFHKEGIARKNV
                     KINGVWEDHQVLAILNPDDEQ*"
     gene            complement(1242779..1243324)
                     /gene="yjcK"
                     /locus_tag="BSU_11890"
                     /old_locus_tag="BSU11890"
     downshifts      complement(1242800)
                     /Source="Nicolas_upshifts"
                     /id="D653"
                     /incds=0
                     /nref=14
                     /ntot=127
                     /MaxReadThrough="0.4032"
                     /MaxDrop="4.23858"
                     /score="-7.12102596"
                     /energy="-7.3"
                     /TU="NA"
                     /idTUdmin="U966"
                     /TUdmin="-17"
                     /isTUend="TRUE"
     CDS             complement(1243394..1244584)
                     /gene="yjcL"
                     /locus_tag="BSU_11900"
                     /old_locus_tag="BSU11900"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral inner membrane protein;
                     possibly aquaporin-related"
                     /protein_id="NP_389072.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11900"
                     /db_xref="EnsemblGenomes-Tr:CAB13047"
                     /db_xref="GOA:O31634"
                     /db_xref="InterPro:IPR008537"
                     /db_xref="SubtiList:BG13165"
                     /db_xref="UniProtKB/Swiss-Prot:O31634"
                     /translation="MHSLISSDDVWVLWGFIAVWAAVSIGLEQRFKWASAVSGAIIAL
                     AGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISS
                     VGTVLGSILAFFLLKQHIPYLDKIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVV
                     ADNFMMALLFFILISIPALKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDI
                     AFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFER
                     LNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFR
                     VRLEEILLAVNATVGGPTTAAAMAIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGNWF
                     SSFL*"
     gene            complement(1243394..1244584)
                     /gene="yjcL"
                     /locus_tag="BSU_11900"
                     /old_locus_tag="BSU11900"
     promotor_-10    complement(1244610..1244629)
                     /Source="Nicolas_upshift_promotors"
                     /id="U966"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.448551448551449"
                     /psig=1
                     /xcortree=2871
                     /SigmaFactorBS="ttttttagaaaaactttttttggACTTGCTGttccgttcccc
                     ggcTATTATAATATGTCTTAATTttctaacaatagaggtgatggggttttgcattctt
                     t"
                     /listShort="yjcL, yjcK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1244614)
                     /Source="Nicolas_upshifts"
                     /id="U966"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.448551448551449"
                     /psig=1
                     /xcortree=2871
                     /SigmaFactorBS="ttttttagaaaaactttttttggACTTGCTGttccgttcccc
                     ggcTATTATAATATGTCTTAATTttctaacaatagaggtgatggggttttgcattctt
                     t"
                     /listShort="yjcL, yjcK"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1244644..1244651)
                     /Source="Nicolas_upshift_promotors"
                     /id="U966"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.448551448551449"
                     /psig=1
                     /xcortree=2871
                     /SigmaFactorBS="ttttttagaaaaactttttttggACTTGCTGttccgttcccc
                     ggcTATTATAATATGTCTTAATTttctaacaatagaggtgatggggttttgcattctt
                     t"
                     /listShort="yjcL, yjcK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1244678..1244685
                     /Source="Nicolas_upshift_promotors"
                     /id="U967"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2414
                     /SigmaFactorBS="agccggggaacggaacagcaagtccaaaaaaagtttttctaa
                     aaaagcaGTTGACGAatagaaggtaaggTTATATAATAGAACTTGTCAgaaagataac
                     a"
                     /listShort="trnSL-Val2, S430"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1244689
                     /Source="Nicolas_upshifts"
                     /id="U967"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2414
                     /SigmaFactorBS="agccggggaacggaacagcaagtccaaaaaaagtttttctaa
                     aaaagcaGTTGACGAatagaaggtaaggTTATATAATAGAACTTGTCAgaaagataac
                     a"
                     /listShort="trnSL-Val2, S430"
                     /GFF_Attribute="listLong"
     promotor_-10    1244699..1244718
                     /Source="Nicolas_upshift_promotors"
                     /id="U967"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.85914085914086"
                     /psig=1
                     /xcortree=2414
                     /SigmaFactorBS="agccggggaacggaacagcaagtccaaaaaaagtttttctaa
                     aaaagcaGTTGACGAatagaaggtaaggTTATATAATAGAACTTGTCAgaaagataac
                     a"
                     /listShort="trnSL-Val2, S430"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     tRNA            1244757..1244829
                     /gene="trnSL-Val2"
                     /locus_tag="BSU_tRNA_83"
                     /product="tRNA-Val"
                     /inference="profile:tRNAscan:1.23"
                     /note="valine tRNA (GAC); Evidence 2a: Function from
                     experimental evidences in other organisms; Product type n:
                     RNA"
                     /function="16.2: Construct biomass (Anabolism)"
     gene            1244757..1244829
                     /gene="trnSL-Val2"
                     /locus_tag="BSU_tRNA_83"
     promotor_-10    complement(1244771..1244788)
                     /Source="Nicolas_upshift_promotors"
                     /id="U968"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.926073926073926"
                     /psig="0.007992007992008"
                     /xcortree=394
                     /SigmaFactorBS="gcaagggtttaagctatgattccgactgggCTCGAACcagcg
                     acctctaccctgtcaAGGTAGCGCTCTCCCAGCtgagctacggaatcatgatatgtat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1244785)
                     /Source="Nicolas_upshifts"
                     /id="U968"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.926073926073926"
                     /psig="0.007992007992008"
                     /xcortree=394
                     /SigmaFactorBS="gcaagggtttaagctatgattccgactgggCTCGAACcagcg
                     acctctaccctgtcaAGGTAGCGCTCTCCCAGCtgagctacggaatcatgatatgtat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1244809..1244815)
                     /Source="Nicolas_upshift_promotors"
                     /id="U968"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.926073926073926"
                     /psig="0.007992007992008"
                     /xcortree=394
                     /SigmaFactorBS="gcaagggtttaagctatgattccgactgggCTCGAACcagcg
                     acctctaccctgtcaAGGTAGCGCTCTCCCAGCtgagctacggaatcatgatatgtat
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1244819
                     /Source="Nicolas_upshifts"
                     /id="D654"
                     /incds=0
                     /nref=17
                     /ntot=80
                     /MaxReadThrough="4.64061"
                     /MaxDrop="5.10012"
                     /score="20.8247903"
                     /energy="-9.1"
                     /TU="U967"
                     /idTUdmin="U965"
                     /TUdmin=550
                     /isTUend="FALSE"
     S_feature       complement(1244844..1245579)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1262876_1263611_c"
                     /HighExp="M9-stat, Lbstat, M0t90, Pyr, T0.30H, M40t90,
                     C30, S1, LPhT, T1.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S429"
     S_feature       1244864..1246512
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1262896_1264544"
                     /HighExp="Cold, C30, G135, G180, G150, Oxctl, Fru, HPh,
                     Glu, UNK1"
                     /AntisenseName="yjcM"
                     /AntisenseCor="0.46809452811910301"
                     /AntisenseRegPval="-15.3"
                     /CDS_PredictionProba="0.27514300000000003"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S430"
     downshifts      complement(1244873)
                     /Source="Nicolas_upshifts"
                     /id="D655"
                     /incds=0
                     /nref=29
                     /ntot=192
                     /MaxReadThrough="1.23936"
                     /MaxDrop="3.57085"
                     /score="-4.98447688"
                     /energy="-7.9"
                     /TU="NA"
                     /idTUdmin="U970"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(1245581..1245669)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1263613_1263701_c"
                     /HighExp="aero, HPh, M0t45, SMM, dia0, GM 150, Mal, M/G,
                     Mt0, LPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S431"
     downshifts      complement(1245624)
                     /Source="Nicolas_upshifts"
                     /id="D656"
                     /incds=0
                     /nref=34
                     /ntot=148
                     /MaxReadThrough="4.13737"
                     /MaxDrop="4.5557"
                     /score="11.73443"
                     /energy="-14.2"
                     /TU="U970"
                     /idTUdmin="U970"
                     /TUdmin="-751"
                     /isTUend="FALSE"
     CDS             complement(1245670..1246899)
                     /gene="yjcM"
                     /locus_tag="BSU_11910"
                     /old_locus_tag="BSU11910"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 20011599"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; phage island"
                     /protein_id="NP_389073.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11910"
                     /db_xref="EnsemblGenomes-Tr:CAB13048"
                     /db_xref="InterPro:IPR024301"
                     /db_xref="SubtiList:BG13166"
                     /db_xref="UniProtKB/Swiss-Prot:O31635"
                     /translation="MKKELLASLVLCLSLSPLVSTNEVFAATTNKETKENVSITNEIG
                     YEKVKDMLEQQKYDFEHNTPLAHPKESKLTDSDEGVLLYSALSKVDKQKFHEFTYDID
                     DVKTSEKNNKLIVEAYITRNFVFGVEKVTTSLGDNIKLEIPKTTSNKQSSQSTNTSNL
                     SFSQVKNSSNQLNVIPLSNSSKQLNVTQLNNSSSTLQYENDEEYSSDVKLDEFLKKYK
                     QEVKNDDKEEVKSEDKPVSMNFNAANSNQLTVTATSVKGYSGYAAMKYAEKYALKPNK
                     NYKYYKDKDCTNFVSQALRAGRMPYFKEWKPYTDAWVNAGAFRSYILKAGGIKMKTVS
                     DTYSNVKLGDVYHYDYHNKIGLRYADGWMDHTAIVTSRANMKLYVSYHSTNRLNVPRE
                     YVTSKEGGKRYVSSIRN*"
     gene            complement(1245670..1246899)
                     /gene="yjcM"
                     /locus_tag="BSU_11910"
                     /old_locus_tag="BSU11910"
     downshifts      complement(1245792)
                     /Source="Nicolas_upshifts"
                     /id="D657"
                     /incds=1
                     /nref=4
                     /ntot=143
                     /MaxReadThrough="5.58558"
                     /MaxDrop="3.45178"
                     /score="11.73443"
                     /energy="-14.2"
                     /TU="U970"
                     /idTUdmin="U970"
                     /TUdmin="-919"
                     /isTUend="FALSE"
     downshifts      1246469
                     /Source="Nicolas_upshifts"
                     /id="D658"
                     /incds=1
                     /nref=1
                     /ntot=48
                     /MaxReadThrough="3.19343"
                     /MaxDrop="1.98614"
                     /score="26.2462772"
                     /energy="-24.7"
                     /TU="NA"
                     /idTUdmin="U967"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(1246900..1246985)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1264932_1265017_c"
                     /HighExp="aero, SMM, T-3.40H, MG 150, Lbexp, SMMPr, GM 90,
                     C90, nit, HPh"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S432"
     promotor_-35    1246940..1246947
                     /Source="Nicolas_upshift_promotors"
                     /id="U969"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig="0.998001998001998"
                     /xcortree=2298
                     /SigmaFactorBS="aaatctaaatataagtaatatttatCATTTACAccaattgaa
                     atatgGCATAAAATACATGTAATAAtataacataaaaataaatacataaaaaggtatc
                     g"
                     /listShort="yjcN, S433, yjzF, yjzG, yjcO, S434, yjcP,
                     yjcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1246962..1246981
                     /Source="Nicolas_upshift_promotors"
                     /id="U969"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig="0.998001998001998"
                     /xcortree=2298
                     /SigmaFactorBS="aaatctaaatataagtaatatttatCATTTACAccaattgaa
                     atatgGCATAAAATACATGTAATAAtataacataaaaataaatacataaaaaggtatc
                     g"
                     /listShort="yjcN, S433, yjzF, yjzG, yjcO, S434, yjcP,
                     yjcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    complement(1246971..1246990)
                     /Source="Nicolas_upshift_promotors"
                     /id="U970"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.320679320679321"
                     /psig="0.999000999001"
                     /xcortree=2299
                     /SigmaFactorBS="gtataattttagttttctttttcattttttcctccgatacCT
                     TTTTAtgtatttattttTATGTTATATTATTACATGTattttatgccatatttcaatt
                     g"
                     /listShort="S432, yjcM, S431, S429"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1246975
                     /Source="Nicolas_upshifts"
                     /id="U969"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.97902097902098"
                     /psig="0.998001998001998"
                     /xcortree=2298
                     /SigmaFactorBS="aaatctaaatataagtaatatttatCATTTACAccaattgaa
                     atatgGCATAAAATACATGTAATAAtataacataaaaataaatacataaaaaggtatc
                     g"
                     /listShort="yjcN, S433, yjzF, yjzG, yjcO, S434, yjcP,
                     yjcQ"
                     /GFF_Attribute="listLong"
     upshifts        complement(1246989)
                     /Source="Nicolas_upshifts"
                     /id="U970"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.320679320679321"
                     /psig="0.999000999001"
                     /xcortree=2299
                     /SigmaFactorBS="gtataattttagttttctttttcattttttcctccgatacCT
                     TTTTAtgtatttattttTATGTTATATTATTACATGTattttatgccatatttcaatt
                     g"
                     /listShort="S432, yjcM, S431, S429"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1247003..1247009)
                     /Source="Nicolas_upshift_promotors"
                     /id="U970"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.320679320679321"
                     /psig="0.999000999001"
                     /xcortree=2299
                     /SigmaFactorBS="gtataattttagttttctttttcattttttcctccgatacCT
                     TTTTAtgtatttattttTATGTTATATTATTACATGTattttatgccatatttcaatt
                     g"
                     /listShort="S432, yjcM, S431, S429"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1247025..1247345
                     /gene="yjcN"
                     /locus_tag="BSU_11920"
                     /old_locus_tag="BSU11920"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; phage island"
                     /protein_id="NP_389074.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11920"
                     /db_xref="EnsemblGenomes-Tr:CAB13049"
                     /db_xref="SubtiList:BG13167"
                     /db_xref="UniProtKB/Swiss-Prot:O31636"
                     /translation="MKKKTKIILSLLAALIVILIVLPVLSPVVFTASSEKGAIRHEIY
                     KRGYPYQSYFAVLQKREGDNESGNLYYVNWLDWKDETGQTPHLCYSKKSSDGEYEVSC
                     GTGP*"
     gene            1247025..1247345
                     /gene="yjcN"
                     /locus_tag="BSU_11920"
                     /old_locus_tag="BSU11920"
     downshifts      1247355
                     /Source="Nicolas_upshifts"
                     /id="D659"
                     /incds=0
                     /nref=57
                     /ntot=233
                     /MaxReadThrough="3.73892"
                     /MaxDrop="4.41989"
                     /score="26.2462772"
                     /energy="-24.7"
                     /TU="U969"
                     /idTUdmin="U967"
                     /TUdmin=886
                     /isTUend="FALSE"
     S_feature       1247400..1247497
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1265432_1265529"
                     /HighExp="LoTm, B60, Cold, B36, T3.30H, T3.0H, T4.0H,
                     T2.0H, Sw, M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S433"
     CDS             1247498..1247629
                     /gene="yjzF"
                     /locus_tag="BSU_11928"
                     /old_locus_tag="BSU11928"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097707.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11928"
                     /db_xref="EnsemblGenomes-Tr:CAX52597"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Z0"
                     /translation="MKQSKKKPSQKQHERLDRFWQQMMNTNMQTLRRGKGGAYKRRK*
                     "
     gene            1247498..1247629
                     /gene="yjzF"
                     /locus_tag="BSU_11928"
                     /old_locus_tag="BSU11928"
     CDS             1247645..1247818
                     /gene="yjzG"
                     /locus_tag="BSU_11929"
                     /old_locus_tag="BSU11929"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097708.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11929"
                     /db_xref="EnsemblGenomes-Tr:CAX52598"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Z1"
                     /translation="MMKNGFAYKNGKLVNIFCGKEELYNELKAFLVKTFSINVKEVSR
                     PSIYRRTKSKQLE*"
     gene            1247645..1247818
                     /gene="yjzG"
                     /locus_tag="BSU_11929"
                     /old_locus_tag="BSU11929"
     CDS             1247855..1248316
                     /gene="yjcO"
                     /locus_tag="BSU_11930"
                     /old_locus_tag="BSU11930"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding protein; phage island"
                     /protein_id="NP_389075.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11930"
                     /db_xref="EnsemblGenomes-Tr:CAB13050"
                     /db_xref="GOA:O31637"
                     /db_xref="InterPro:IPR013324"
                     /db_xref="SubtiList:BG13168"
                     /db_xref="UniProtKB/Swiss-Prot:O31637"
                     /translation="MTDQMIAWEIEEWIRDYKFMLREIKRLNRVLNKVDFISTKLTAT
                     YGEEAGMPRGSAGVSQAELRQMDRRERRLHKYESIVHYLDNAMEHIEEEKHRIVYDCM
                     MEGMSYTAIANHLDCSRDTIRKIKTAIIGNIVNKVKEANFLQYLNSFKSAV*"
     gene            1247855..1248316
                     /gene="yjcO"
                     /locus_tag="BSU_11930"
                     /old_locus_tag="BSU11930"
     promotor_-35    1248287..1248294
                     /Source="Nicolas_upshift_promotors"
                     /id="U971"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.997002997002997"
                     /xcortree=2045
                     /SigmaFactorBS="aataaagtcaaagaagccaactttctgcaaTATTTGAAttcg
                     tttaaatcggCGGTGTAAAATGGGGGGCAGgatcggcgcggcggattattcctgcgtc
                     a"
                     /listShort="S434"
                     /listLong="yjcP, yjcQ"
                     /label="promotor_-35"
     promotor_-10    1248309..1248328
                     /Source="Nicolas_upshift_promotors"
                     /id="U971"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.997002997002997"
                     /xcortree=2045
                     /SigmaFactorBS="aataaagtcaaagaagccaactttctgcaaTATTTGAAttcg
                     tttaaatcggCGGTGTAAAATGGGGGGCAGgatcggcgcggcggattattcctgcgtc
                     a"
                     /listShort="S434"
                     /listLong="yjcP, yjcQ"
                     /label="promotor_-10"
     S_feature       1248317..1248557
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1266349_1266589"
                     /HighExp="LoTm, B60, Cold, B36, Diami, S8, dia15, C30,
                     dia5, LPhT"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.12525800000000001"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.997, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S434"
     upshifts        1248317
                     /Source="Nicolas_upshifts"
                     /id="U971"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig="0.997002997002997"
                     /xcortree=2045
                     /SigmaFactorBS="aataaagtcaaagaagccaactttctgcaaTATTTGAAttcg
                     tttaaatcggCGGTGTAAAATGGGGGGCAGgatcggcgcggcggattattcctgcgtc
                     a"
                     /listShort="S434"
                     /listLong="yjcP, yjcQ"
     promotor_-35    1248530..1248537
                     /Source="Nicolas_upshift_promotors"
                     /id="U972"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2836
                     /SigmaFactorBS="caacagattcgttcgacaaattttgcaaattGTTAATCGata
                     acttttcattCCCGATATTAAAAATGGGAgtgaattgtaaaatgaaaaaacagaaaaa
                     t"
                     /listShort="yjcP, yjcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1248551..1248569
                     /Source="Nicolas_upshift_promotors"
                     /id="U972"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2836
                     /SigmaFactorBS="caacagattcgttcgacaaattttgcaaattGTTAATCGata
                     acttttcattCCCGATATTAAAAATGGGAgtgaattgtaaaatgaaaaaacagaaaaa
                     t"
                     /listShort="yjcP, yjcQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1248559
                     /Source="Nicolas_upshifts"
                     /id="U972"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2836
                     /SigmaFactorBS="caacagattcgttcgacaaattttgcaaattGTTAATCGata
                     acttttcattCCCGATATTAAAAATGGGAgtgaattgtaaaatgaaaaaacagaaaaa
                     t"
                     /listShort="yjcP, yjcQ"
                     /GFF_Attribute="listLong"
     CDS             1248582..1249085
                     /gene="yjcP"
                     /locus_tag="BSU_11940"
                     /old_locus_tag="BSU11940"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15033535"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein: phage island"
                     /protein_id="NP_389076.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11940"
                     /db_xref="EnsemblGenomes-Tr:CAB13051"
                     /db_xref="GOA:O31638"
                     /db_xref="SubtiList:BG13169"
                     /db_xref="UniProtKB/Swiss-Prot:O31638"
                     /translation="MKKQKNNKKKNIEKRNIEKRNIEEKNNEDLEELENAIYTYHKKE
                     LLAFFLEKTRIGHDKEEYKRFQSLLYKLDIECLEFAISRFSHIDIIHDHSKYVPAFIP
                     LFAAYLTMFFNFYEKHWGALSFAAGTIAAIVWIIAVERKHRNQAISIMKIFEQVKERK
                     VKDRSKD*"
     gene            1248582..1249085
                     /gene="yjcP"
                     /locus_tag="BSU_11940"
                     /old_locus_tag="BSU11940"
     CDS             1249097..1249381
                     /gene="yjcQ"
                     /locus_tag="BSU_11950"
                     /old_locus_tag="BSU11950"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15033535"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; phage island"
                     /protein_id="NP_389077.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11950"
                     /db_xref="EnsemblGenomes-Tr:CAB13052"
                     /db_xref="InterPro:IPR018597"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:2HGC"
                     /db_xref="SubtiList:BG13170"
                     /db_xref="UniProtKB/Swiss-Prot:O31639"
                     /translation="MNKDKLRYAILKEIFEGNTPLSENDIGVTEDQFDDAVNFLKREG
                     YIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKAYKTIKEIKDWIK*"
     gene            1249097..1249381
                     /gene="yjcQ"
                     /locus_tag="BSU_11950"
                     /old_locus_tag="BSU11950"
     downshifts      1249351
                     /Source="Nicolas_upshifts"
                     /id="D660"
                     /incds=0
                     /nref=215
                     /ntot=271
                     /MaxReadThrough="1.63272"
                     /MaxDrop="7.26386"
                     /score="22.0381158"
                     /energy="-7.2"
                     /TU="NA"
                     /idTUdmin="U969"
                     /TUdmin=0
                     /isTUend="TRUE"
     upshifts        complement(1249383)
                     /Source="Nicolas_upshifts"
                     /id="U973"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.828171828171828"
                     /psig="0.107892107892108"
                     /xcortree=80
                     /SigmaFactorBS="tcctgagacttaccggaagcagtttacagggaacaaaaaaag
                     caccCCGCaggatgctcttattatttaatccaatctttaatctctttaatggtcttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    complement(1249394..1249397)
                     /Source="Nicolas_upshift_promotors"
                     /id="U973"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.828171828171828"
                     /psig="0.107892107892108"
                     /xcortree=80
                     /SigmaFactorBS="tcctgagacttaccggaagcagtttacagggaacaaaaaaag
                     caccCCGCaggatgctcttattatttaatccaatctttaatctctttaatggtcttat
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             1249542..1250069
                     /gene="yjcR"
                     /locus_tag="BSU_11960"
                     /old_locus_tag="BSU11960"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 7489895, 7704261;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage-related nucleic acid binding
                     terminase small subunit; phage island"
                     /protein_id="NP_389078.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11960"
                     /db_xref="EnsemblGenomes-Tr:CAB13053"
                     /db_xref="GOA:O31640"
                     /db_xref="InterPro:IPR009057"
                     /db_xref="InterPro:IPR010332"
                     /db_xref="SubtiList:BG13171"
                     /db_xref="UniProtKB/Swiss-Prot:O31640"
                     /translation="MAEKHIQAYKDYVKGMKYKDLAEKYGVSVNTIKSWKQRHGWERK
                     KGAPIEKSVHTKKGGQPGNKNALGNNGGAPQKNQNAVTHGFFSKFLPEETLEIMEEIQ
                     ERSPADMIWDQIQIQYAAILRAQKIMFVSDKEEMIKELKKKRSLISEVSEIEDGLVIS
                     FSTWFRYRLYSETNT*"
     gene            1249542..1250069
                     /gene="yjcR"
                     /locus_tag="BSU_11960"
                     /old_locus_tag="BSU11960"
     promotor_-35    1250216..1250221
                     /Source="Nicolas_upshift_promotors"
                     /id="U974"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.992007992007992"
                     /xcortree=2218
                     /SigmaFactorBS="tacagcgattgattaactcgagcaatcaatgtcgcagttATA
                     TTTatttttcaagaaAATGTTATAATGAAAAGCCAtaaaatgatgggagggggaattt
                     c"
                     /listShort="yjcS, S435, yjdA, S436"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1250234..1250253
                     /Source="Nicolas_upshift_promotors"
                     /id="U974"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.992007992007992"
                     /xcortree=2218
                     /SigmaFactorBS="tacagcgattgattaactcgagcaatcaatgtcgcagttATA
                     TTTatttttcaagaaAATGTTATAATGAAAAGCCAtaaaatgatgggagggggaattt
                     c"
                     /listShort="yjcS, S435, yjdA, S436"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1250237
                     /Source="Nicolas_upshifts"
                     /id="U974"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.748251748251748"
                     /psig="0.992007992007992"
                     /xcortree=2218
                     /SigmaFactorBS="tacagcgattgattaactcgagcaatcaatgtcgcagttATA
                     TTTatttttcaagaaAATGTTATAATGAAAAGCCAtaaaatgatgggagggggaattt
                     c"
                     /listShort="yjcS, S435, yjdA, S436"
                     /GFF_Attribute="listLong"
     CDS             1250243..1250560
                     /gene="yjcS"
                     /locus_tag="BSU_11970"
                     /old_locus_tag="BSU11970"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; phage island"
                     /protein_id="NP_389079.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11970"
                     /db_xref="EnsemblGenomes-Tr:CAB13054"
                     /db_xref="GOA:O31641"
                     /db_xref="InterPro:IPR007138"
                     /db_xref="InterPro:IPR011008"
                     /db_xref="PDB:1Q8B"
                     /db_xref="SubtiList:BG13172"
                     /db_xref="UniProtKB/Swiss-Prot:O31641"
                     /translation="MKSHKMMGGGISMHYITACLKIISDKDLNEIMKEFKKLEEETNK
                     EEGCITFHAYPLEPSERKIMLWEIWENEEAVKIHFTKKHTIDVQKQELTEVEWLMKSN
                     VND*"
     gene            1250243..1250560
                     /gene="yjcS"
                     /locus_tag="BSU_11970"
                     /old_locus_tag="BSU11970"
     S_feature       1250561..1250796
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1268593_1268828"
                     /HighExp="dia5, H2O2, dia15, dia0, Lbexp, Lbtran, C90,
                     Oxctl, S1, aero"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S435"
     CDS             1250797..1251552
                     /gene="yjdA"
                     /locus_tag="BSU_11980"
                     /old_locus_tag="BSU11980"
                     /EC_number="1.1.1.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 2243795; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-carrier protein oxidoreductase;
                     phage island"
                     /protein_id="NP_389080.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11980"
                     /db_xref="EnsemblGenomes-Tr:CAB13055"
                     /db_xref="GOA:O31642"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13173"
                     /db_xref="UniProtKB/Swiss-Prot:O31642"
                     /translation="MSHSQEKIALITGASSQGDIGTAICRKLASQGIHIFFTHWNSDT
                     AWIEEFQQEILRMGVRCEAMKIDLSDAHAAFTIHEKISDKLGYPSILINNAAHSASDN
                     YVSLDAKSLDEHYAVNMRSNFLLCVEFARRFKKSNLISGRIINMTSGQDLGPLPGELA
                     YAATKGAISAFTRSLSQELAPLGITVNAVNPGPTDSTWMTDEIRNFLSPKFPMGRIGT
                     PDDAARMIAFLASDEAEWITGQIIHSEGGFIRG*"
     gene            1250797..1251552
                     /gene="yjdA"
                     /locus_tag="BSU_11980"
                     /old_locus_tag="BSU11980"
     S_feature       1251553..1251640
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1269585_1269672"
                     /HighExp="C90, S1, dia0, dia5, Mt0, Lbexp, Gly, H2O2,
                     Oxctl, Lbtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.992"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S436"
     downshifts      1251597
                     /Source="Nicolas_upshifts"
                     /id="D661"
                     /incds=0
                     /nref=89
                     /ntot=238
                     /MaxReadThrough="2.66489"
                     /MaxDrop="5.39812"
                     /score="-0.84766737"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U974"
                     /TUdmin="-20"
                     /isTUend="TRUE"
     S_feature       complement(1251640..1251700)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1269672_1269732_c"
                     /HighExp="Lbstat, BI, BT, nit, S2, ferm, B60, B36, M0t90,
                     S3"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="NA"
                     /TUshortPSig="NA"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S437"
     downshifts      complement(1251671)
                     /Source="Nicolas_upshifts"
                     /id="D662"
                     /incds=0
                     /nref=80
                     /ntot=134
                     /MaxReadThrough="1.9707"
                     /MaxDrop="7.43843"
                     /score="-5.56180712"
                     /energy="-14.2"
                     /TU="NA"
                     /idTUdmin="U975"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1251701..1252048)
                     /gene="yjdB"
                     /locus_tag="BSU_11990"
                     /old_locus_tag="BSU11990"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16291680; Product type
                     h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein; phage island"
                     /protein_id="NP_389081.1"
                     /db_xref="EnsemblGenomes-Gn:BSU11990"
                     /db_xref="EnsemblGenomes-Tr:CAB13056"
                     /db_xref="InterPro:IPR003343"
                     /db_xref="InterPro:IPR008964"
                     /db_xref="SubtiList:BG13174"
                     /db_xref="UniProtKB/Swiss-Prot:O31643"
                     /translation="MNFKKTVVSALSISALALSVSGVASAHEINSTPTEVKNISISPT
                     HVIKIQDYNLPLKVGETYSVKNNSATRYWTDNQKVAEVDQNGLVTAKSKGKATITLFK
                     GTAVFGKVYVTVY*"
     gene            complement(1251701..1252048)
                     /gene="yjdB"
                     /locus_tag="BSU_11990"
                     /old_locus_tag="BSU11990"
     promotor_-10    complement(1252080..1252098)
                     /Source="Nicolas_upshift_promotors"
                     /id="U975"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=507
                     /SigmaFactorBS="tcaattgatcgttcacatattattaacatttatttaCAAGGA
                     AAAtaattactttTATTGAATTGTTATAGTGCaagacaaaaaactttaaaggagtgtt
                     t"
                     /listShort="yjdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1252093)
                     /Source="Nicolas_upshifts"
                     /id="U975"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=507
                     /SigmaFactorBS="tcaattgatcgttcacatattattaacatttatttaCAAGGA
                     AAAtaattactttTATTGAATTGTTATAGTGCaagacaaaaaactttaaaggagtgtt
                     t"
                     /listShort="yjdB"
                     /GFF_Attribute="listLong"
     S_feature       complement(1252095..1252551)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1270127_1270583_c"
                     /HighExp="T1.30H, T2.0H, T2.30H, T3.0H, M9-stat, T1.0H,
                     Lbstat, T3.30H, M0t90, Lbtran"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.983"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S438"
     promotor_-35    complement(1252109..1252117)
                     /Source="Nicolas_upshift_promotors"
                     /id="U975"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=507
                     /SigmaFactorBS="tcaattgatcgttcacatattattaacatttatttaCAAGGA
                     AAAtaattactttTATTGAATTGTTATAGTGCaagacaaaaaactttaaaggagtgtt
                     t"
                     /listShort="yjdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    1252511..1252529
                     /Source="Nicolas_upshift_promotors"
                     /id="U976"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.33966033966034"
                     /psig="0.99100899100899"
                     /xcortree=1564
                     /SigmaFactorBS="tttttccggaagcttcggtaaaaaacgaaacttttgtctcta
                     tgatttTGTTTTATAATGTAAACGGtttcttatatagtatacttatactatcaatttg
                     c"
                     /listShort="manR"
                     /listLong="manP, manA, S439, S440, yjdF, yjdI"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1252523
                     /Source="Nicolas_upshifts"
                     /id="U976"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.33966033966034"
                     /psig="0.99100899100899"
                     /xcortree=1564
                     /SigmaFactorBS="tttttccggaagcttcggtaaaaaacgaaacttttgtctcta
                     tgatttTGTTTTATAATGTAAACGGtttcttatatagtatacttatactatcaatttg
                     c"
                     /listShort="manR"
                     /listLong="manP, manA, S439, S440, yjdF, yjdI"
     promotor_-10    complement(1252529..1252548)
                     /Source="Nicolas_upshift_promotors"
                     /id="U977"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.983016983016983"
                     /xcortree=327
                     /SigmaFactorBS="ttatgtattccatctgtttttctatccttcctgtcagtatct
                     ACTTGAGCaaattgatagtatAAGTATACTATATAAGAAACcgtttacattataaaac
                     a"
                     /listShort="S438, yjdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1252551)
                     /Source="Nicolas_upshifts"
                     /id="U977"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.983016983016983"
                     /xcortree=327
                     /SigmaFactorBS="ttatgtattccatctgtttttctatccttcctgtcagtatct
                     ACTTGAGCaaattgatagtatAAGTATACTATATAAGAAACcgtttacattataaaac
                     a"
                     /listShort="S438, yjdB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1252562..1252569)
                     /Source="Nicolas_upshift_promotors"
                     /id="U977"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.572427572427572"
                     /psig="0.983016983016983"
                     /xcortree=327
                     /SigmaFactorBS="ttatgtattccatctgtttttctatccttcctgtcagtatct
                     ACTTGAGCaaattgatagtatAAGTATACTATATAAGAAACcgtttacattataaaac
                     a"
                     /listShort="S438, yjdB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1252599..1254545
                     /gene="manR"
                     /locus_tag="BSU_12000"
                     /old_locus_tag="BSU12000"
                     /function="16.1: Circulate"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10438772, 10960106, 23551403"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10438772, 10960106,
                     23551403; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional DNA-binding activator"
                     /protein_id="NP_389082.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12000"
                     /db_xref="EnsemblGenomes-Tr:CAB13057"
                     /db_xref="GOA:O31644"
                     /db_xref="InterPro:IPR002178"
                     /db_xref="InterPro:IPR007737"
                     /db_xref="InterPro:IPR011608"
                     /db_xref="InterPro:IPR013011"
                     /db_xref="InterPro:IPR013196"
                     /db_xref="InterPro:IPR016152"
                     /db_xref="InterPro:IPR036095"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036634"
                     /db_xref="SubtiList:BG13175"
                     /db_xref="UniProtKB/Swiss-Prot:O31644"
                     /translation="MEYINTRQKEILYLLLSEPDDYLVVQDFADRVQCSEKTIRNDLK
                     VIEDYLNEHSHAQLIRKPGLGVYLHIEEQERTWLSQQLHTEHFSSRQRSDKERMLHIA
                     YDLLMNPKPVSAKDIAARHFVNRSSIKKDLYAVEEWLKRFDLTLVSRQRLGLKVEGNE
                     RNKRKALARISDLIHNTAFTSQFIKSKFLHYEVDFVTKEIKSLQKKHSLYFTDETFES
                     LLLHTLLMVRRIKMKQPISLSPKEMAAVKKKKEYQWTFACLQRLEPVFAIRFPEEEAV
                     YLTLHILGGKVRYPLQTEENLENAVLPKVVGHLINRVSELKMMDFHKDQDLINGLNIH
                     LNTVLQRLSYDLSVANPMLNDIKKMYPYLFHLIIDVLEDINQTFDLHIPEEEAAYLTL
                     HFQAAIERMQGSSETHKKAVIVCHMGIGMSQLLRTKIERKYHQIAVMACIAKADLKDY
                     IKKHEDIDLVISTIALENITVPHIVVSPLLEPGEEKKLSAFIRQLGESHRQKQKTFQM
                     LNNTTPFLVFLQQEAEHRYKLIEQLATALFEKGYVDKDYAVHAVMREKMSATNIGSGI
                     AIPHANAKFIKQSAIAIATLKEPLEWGNEKVSLVFMLAVKHEDQTMTKQLFSELSYLS
                     EQPAFVQKLTKETNVMTFLSHLDY*"
     gene            1252599..1254545
                     /gene="manR"
                     /locus_tag="BSU_12000"
                     /old_locus_tag="BSU12000"
     downshifts      1254521
                     /Source="Nicolas_upshifts"
                     /id="D663"
                     /incds=0
                     /nref=3
                     /ntot=35
                     /MaxReadThrough="4.64475"
                     /MaxDrop="3.79938"
                     /score="28.4199725"
                     /energy="-9.1"
                     /TU="U976"
                     /idTUdmin="U976"
                     /TUdmin="-110"
                     /isTUend="FALSE"
     promotor_-35    1254621..1254624
                     /Source="Nicolas_upshift_promotors"
                     /id="U978"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.424575424575425"
                     /psig="0.936063936063936"
                     /xcortree=1565
                     /SigmaFactorBS="tttattaccggaacctatggtaaaaaaagcGATTttaatgag
                     ctgatttCGGTATACAGTTGAGACAAGatcttattattcacactttaaaggaggtttc
                     c"
                     /listShort="manP, manA, S439, S440, yjdF, yjdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1254640..1254659
                     /Source="Nicolas_upshift_promotors"
                     /id="U978"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.424575424575425"
                     /psig="0.936063936063936"
                     /xcortree=1565
                     /SigmaFactorBS="tttattaccggaacctatggtaaaaaaagcGATTttaatgag
                     ctgatttCGGTATACAGTTGAGACAAGatcttattattcacactttaaaggaggtttc
                     c"
                     /listShort="manP, manA, S439, S440, yjdF, yjdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1254651
                     /Source="Nicolas_upshifts"
                     /id="U978"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.424575424575425"
                     /psig="0.936063936063936"
                     /xcortree=1565
                     /SigmaFactorBS="tttattaccggaacctatggtaaaaaaagcGATTttaatgag
                     ctgatttCGGTATACAGTTGAGACAAGatcttattattcacactttaaaggaggtttc
                     c"
                     /listShort="manP, manA, S439, S440, yjdF, yjdI"
                     /GFF_Attribute="listLong"
     upshifts        complement(1254663)
                     /Source="Nicolas_upshifts"
                     /id="U979"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.748251748251748"
                     /psig="0.14985014985015"
                     /xcortree=304
                     /SigmaFactorBS="tcggacaagatgtaatcgctaacagtttcataggaaaCCTCC
                     TTTAAAGTGTgaataataagatcttgtctcaactgtataccgaaatcagctcattaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    complement(1254672..1254686)
                     /Source="Nicolas_upshift_promotors"
                     /id="U979"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp="0.748251748251748"
                     /psig="0.14985014985015"
                     /xcortree=304
                     /SigmaFactorBS="tcggacaagatgtaatcgctaacagtttcataggaaaCCTCC
                     TTTAAAGTGTgaataataagatcttgtctcaactgtataccgaaatcagctcattaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     CDS             1254693..1256645
                     /gene="manP"
                     /locus_tag="BSU_12010"
                     /old_locus_tag="BSU12010"
                     /EC_number="2.7.1.191"
                     /function="16.1: Circulate"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10627040, 10960106, 23551403"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10627040, 10960106,
                     23551403; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase system (PTS)
                     mannose-specificenzyme IIBCA component"
                     /protein_id="NP_389083.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12010"
                     /db_xref="EnsemblGenomes-Tr:CAB13058"
                     /db_xref="GOA:O31645"
                     /db_xref="InterPro:IPR002178"
                     /db_xref="InterPro:IPR003352"
                     /db_xref="InterPro:IPR003353"
                     /db_xref="InterPro:IPR003501"
                     /db_xref="InterPro:IPR004715"
                     /db_xref="InterPro:IPR006327"
                     /db_xref="InterPro:IPR013011"
                     /db_xref="InterPro:IPR013014"
                     /db_xref="InterPro:IPR016152"
                     /db_xref="InterPro:IPR036095"
                     /db_xref="PDB:2R48"
                     /db_xref="SubtiList:BG13176"
                     /db_xref="UniProtKB/Swiss-Prot:O31645"
                     /translation="MKLLAITSCPNGIAHTYMAAENLQKAADRLGVSIKVETQGGIGV
                     ENKLTEEEIREADAIIIAADRSVNKDRFIGKKLLSVGVQDGIRKPEELIQKALNGDIP
                     VYRSATKSESGNHQEKKQNPIYRHLMNGVSFMVPFIVVGGLLIAVALTLGGEKTPKGL
                     VIPDDSFWKTIEQIGSASFSFMIPILAGYIAYSIADKPGLVPGMIGGYIAATGSFYDS
                     ASGAGFLGGIIAGFLAGYAALWIKKLKVPKAIQPIMPIIIIPVFASLIVGLAFVFLIG
                     APVAQIFASLTVWLAGMKGSSSILLALILGAMISFDMGGPVNKVAFLFGSAMIGEGNY
                     EIMGPIAVAICIPPIGLGIATFLGKRKFEASQREMGKAAFTMGLFGITEGAIPFAAQD
                     PLRVIPSIMAGSMTGSVIAMIGNVGDRVAHGGPIVAVLGAVDHVLMFFIAVIAGSLVT
                     ALFVNVLKKDITASPVLSETAPTSAPSEAAAANEIKQPIQSQKAEMSEFKKLTDIISP
                     ELIEPNLSGETSDDIIDELIQKLSRRGALLSESGFKQAILNREQQGTTAIGMNIAIPH
                     GKSEAVREPSVAFGIKRSGVDWNSLDGSEAKLIFMIAVPKESGGNQHLKILQMLSRKL
                     MDDNYRERLLSVQTTEEAYKLLEEIE*"
     gene            1254693..1256645
                     /gene="manP"
                     /locus_tag="BSU_12010"
                     /old_locus_tag="BSU12010"
     CDS             1256660..1257607
                     /gene="manA"
                     /locus_tag="BSU_12020"
                     /old_locus_tag="BSU12020"
                     /EC_number="5.3.1.8"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10960106, 7934877, 20862359, 23551403"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10960106, 7934877,
                     20862359, 23551403; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6 phosphate isomerase; cupin family"
                     /protein_id="NP_389084.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12020"
                     /db_xref="EnsemblGenomes-Tr:CAB13059"
                     /db_xref="GOA:O31646"
                     /db_xref="InterPro:IPR001250"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR014628"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="SubtiList:BG13177"
                     /db_xref="UniProtKB/Swiss-Prot:O31646"
                     /translation="MTTEPLFFKPVFKERIWGGTALADFGYTIPSQRTGECWAFAAHQ
                     NGQSVVQNGMYKGFTLSELWEHHRHLFGQLEGDRFPLLTKILDADQDLSVQVHPNDEY
                     ANIHENGELGKTECWYIIDCQKDAEIIYGHNATTKEELTTMIERGEWDELLRRVKVKP
                     GDFFYVPSGTVHAIGKGILALETQQNSDTTYRLYDYDRKDAEGKLRELHLKKSIEVIE
                     VPSIPERHTVHHEQIEDLLTTTLIECAYFSVGKWNLSGSASLKQQKPFLLISVIEGEG
                     RMISGEYVYPFKKGDHMLLPYGLGEFKLEGYAECIVSHL*"
     gene            1256660..1257607
                     /gene="manA"
                     /locus_tag="BSU_12020"
                     /old_locus_tag="BSU12020"
     S_feature       1257608..1257706
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1275640_1275738"
                     /HighExp="Oxctl, Lbexp, Paraq, T0.30H, dia0, Diami, H2O2,
                     dia5, Fru, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.15168699999999999"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.936"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.991"
                     /label="S439"
     promotor_-35    1257681..1257687
                     /Source="Nicolas_upshift_promotors"
                     /id="U980"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.463536463536464"
                     /psig="0.995004995004995"
                     /xcortree=2151
                     /SigmaFactorBS="ctattctccagcaatgatctaaataaaataagaGTTTAATag
                     ttggagaagaaaTGTTACACTCTTTTCTGTATatggtaaagaatgaaaaaacacgatt
                     c"
                     /listShort="S440, yjdF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1257702..1257721
                     /Source="Nicolas_upshift_promotors"
                     /id="U980"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.463536463536464"
                     /psig="0.995004995004995"
                     /xcortree=2151
                     /SigmaFactorBS="ctattctccagcaatgatctaaataaaataagaGTTTAATag
                     ttggagaagaaaTGTTACACTCTTTTCTGTATatggtaaagaatgaaaaaacacgatt
                     c"
                     /listShort="S440, yjdF"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1257708..1257776
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1275740_1275808"
                     /HighExp="Oxctl, Lbexp, Paraq, T0.30H, dia0, Diami, dia5,
                     Fru, H2O2, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.995, 0.936"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.991"
                     /label="S440"
     upshifts        1257708
                     /Source="Nicolas_upshifts"
                     /id="U980"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.463536463536464"
                     /psig="0.995004995004995"
                     /xcortree=2151
                     /SigmaFactorBS="ctattctccagcaatgatctaaataaaataagaGTTTAATag
                     ttggagaagaaaTGTTACACTCTTTTCTGTATatggtaaagaatgaaaaaacacgatt
                     c"
                     /listShort="S440, yjdF"
                     /GFF_Attribute="listLong"
     CDS             1257777..1258259
                     /gene="yjdF"
                     /locus_tag="BSU_12030"
                     /old_locus_tag="BSU12030"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 20139185"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389085.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12030"
                     /db_xref="EnsemblGenomes-Tr:CAB13060"
                     /db_xref="InterPro:IPR016787"
                     /db_xref="SubtiList:BG13178"
                     /db_xref="UniProtKB/Swiss-Prot:O31647"
                     /translation="MSVTFPSSGCPSFFNIFYEEGIVMKLTIYYDGQFWVGVVEVVDN
                     GKLRAFRHLFGKEPRDSEVLEFVHNQLLNMMAQAEQEGVRLQGRRQKKINPKRLQRQV
                     SKELKNAGVTSKAQEAIKLELEARKQKKKQIMKEQREHVKEQRYMLKKQKAKKKHRGK
                     *"
     gene            1257777..1258259
                     /gene="yjdF"
                     /locus_tag="BSU_12030"
                     /old_locus_tag="BSU12030"
     downshifts      1258239
                     /Source="Nicolas_upshifts"
                     /id="D664"
                     /incds=0
                     /nref=220
                     /ntot=267
                     /MaxReadThrough="5.32805"
                     /MaxDrop="7.35641"
                     /score="7.68574519"
                     /energy="-10.2"
                     /TU="U978"
                     /idTUdmin="U980"
                     /TUdmin=1
                     /isTUend="TRUE"
     CDS             complement(1258305..1258811)
                     /gene="yjdG"
                     /locus_tag="BSU_12040"
                     /old_locus_tag="BSU12040"
                     /EC_number="2.3.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative acetyltransferase"
                     /protein_id="NP_389086.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12040"
                     /db_xref="EnsemblGenomes-Tr:CAB13061"
                     /db_xref="GOA:O31648"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG13179"
                     /db_xref="UniProtKB/Swiss-Prot:O31648"
                     /translation="MVLLETNRLRLQTIDIPLLDAASKQDHQAIKELGYETNGEWPNS
                     DFFEAIPYFREILVKNNGTKGFDSWIIVKKDNYEIVGGTGFLGDPDENGMIEIGFATN
                     KSHRRKGYCVEAAQKLINWALSRETVSRITARCEHDNLGSQKTLEKLGFILNHKSAEY
                     KHWIYVTK*"
     gene            complement(1258305..1258811)
                     /gene="yjdG"
                     /locus_tag="BSU_12040"
                     /old_locus_tag="BSU12040"
     downshifts      complement(1258329)
                     /Source="Nicolas_upshifts"
                     /id="D665"
                     /incds=0
                     /nref=13
                     /ntot=154
                     /MaxReadThrough="2.51872"
                     /MaxDrop="4.09551"
                     /score="15.8830125"
                     /energy="-9.9"
                     /TU="NA"
                     /idTUdmin="U984"
                     /TUdmin=7
                     /isTUend="TRUE"
     misc_feature    complement(1258836..1258855)
                     /Source="Nicolas_upshift_promotors"
                     /id="U981"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig="0.775224775224775"
                     /xcortree=679
                     /SigmaFactorBS="aattttttcatctttctctactgccaaggtaccagagaaaat
                     tgttaTATGTTATCATTATTCCCAGtaaaaagaaaagaggattaaatatatggttctc
                     c"
                     /listShort="yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1258842)
                     /Source="Nicolas_upshifts"
                     /id="U981"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.654345654345654"
                     /psig="0.775224775224775"
                     /xcortree=679
                     /SigmaFactorBS="aattttttcatctttctctactgccaaggtaccagagaaaat
                     tgttaTATGTTATCATTATTCCCAGtaaaaagaaaagaggattaaatatatggttctc
                     c"
                     /listShort="yjdG"
                     /GFF_Attribute="listLong"
     S_feature       complement(1258844..1259029)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1276876_1277061_c"
                     /HighExp="S5, S4, S7, S6, S8, B36, LoTm, S3, B60, T1.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.289238"
                     /TUshortSig="SigEF, SigWXY"
                     /TUshortPSig="0.999, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S441"
     CDS             complement(1259030..1259425)
                     /gene="yjdH"
                     /locus_tag="BSU_12050"
                     /old_locus_tag="BSU12050"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12562816; Product type
                     cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="putative spore coat protein"
                     /protein_id="NP_389087.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12050"
                     /db_xref="EnsemblGenomes-Tr:CAB13062"
                     /db_xref="SubtiList:BG13180"
                     /db_xref="UniProtKB/Swiss-Prot:O31649"
                     /translation="MYHYFYGPALIPYFSHTHNPQRSPDFSERQRRREITLTVDGFVP
                     PSSTEDLGDGFYSYAWTNQQVINPGEYLVCHLEGRDINVINGGFTPRDTAPLYAVASF
                     PRRRNQWVIIIHNPVQTQRAISLYLIAKR*"
     gene            complement(1259030..1259425)
                     /gene="yjdH"
                     /locus_tag="BSU_12050"
                     /old_locus_tag="BSU12050"
     promotor_-10    complement(1259448..1259466)
                     /Source="Nicolas_upshift_promotors"
                     /id="U982"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1101
                     /SigmaFactorBS="ctatagcccattattagtctacatggaacaaaacaGGAATGa
                     acaaataactcccACATACAATTTGTATGAATggaaaataaaggagtggttgctttgt
                     a"
                     /listShort="yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1259461)
                     /Source="Nicolas_upshifts"
                     /id="U982"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1101
                     /SigmaFactorBS="ctatagcccattattagtctacatggaacaaaacaGGAATGa
                     acaaataactcccACATACAATTTGTATGAATggaaaataaaggagtggttgctttgt
                     a"
                     /listShort="yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
     S_feature       complement(1259463..1260163)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1277495_1278195_c"
                     /HighExp="T0.30H, T1.0H, T-0.40H, T1.30H, T0.0H, S0,
                     T2.0H, Salt, T2.30H, T-1.10H"
                     /AntisenseName="yjdI"
                     /AntisenseCor="-0.383915151906285"
                     /AntisenseRegPval="-10.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S442"
     promotor_-35    complement(1259481..1259486)
                     /Source="Nicolas_upshift_promotors"
                     /id="U982"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=1101
                     /SigmaFactorBS="ctatagcccattattagtctacatggaacaaaacaGGAATGa
                     acaaataactcccACATACAATTTGTATGAATggaaaataaaggagtggttgctttgt
                     a"
                     /listShort="yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1259569..1259576
                     /Source="Nicolas_upshift_promotors"
                     /id="U983"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2214
                     /SigmaFactorBS="tgtccttccgttgattcaatgctagtaaCCTTGAAAatgcag
                     gttaggaTGATAGAATTTACATATTACtgcaagaagttagacatacatcattttgata
                     g"
                     /listShort="yjdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1259590..1259609
                     /Source="Nicolas_upshift_promotors"
                     /id="U983"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2214
                     /SigmaFactorBS="tgtccttccgttgattcaatgctagtaaCCTTGAAAatgcag
                     gttaggaTGATAGAATTTACATATTACtgcaagaagttagacatacatcattttgata
                     g"
                     /listShort="yjdI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1259601
                     /Source="Nicolas_upshifts"
                     /id="U983"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.983016983016983"
                     /psig=1
                     /xcortree=2214
                     /SigmaFactorBS="tgtccttccgttgattcaatgctagtaaCCTTGAAAatgcag
                     gttaggaTGATAGAATTTACATATTACtgcaagaagttagacatacatcattttgata
                     g"
                     /listShort="yjdI"
                     /GFF_Attribute="listLong"
     CDS             1259654..1260133
                     /gene="trnE"
                     /locus_tag="BSU_12060"
                     /old_locus_tag="BSU12060"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 22128149; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cys-tRNApro deacetylase; tRNA editing"
                     /protein_id="NP_389088.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12060"
                     /db_xref="EnsemblGenomes-Tr:CAB13063"
                     /db_xref="GOA:O31650"
                     /db_xref="InterPro:IPR004369"
                     /db_xref="InterPro:IPR007214"
                     /db_xref="InterPro:IPR036754"
                     /db_xref="SubtiList:BG13181"
                     /db_xref="UniProtKB/Swiss-Prot:O31650"
                     /translation="MAKKMAKTNAVRLIEQQNISYEVLGYKTDGQPVDGISVAEKIGY
                     SLKYVYKTLVAAAGTNHYYVFVVPVAEELDVKKAAKVTGEKKIEMIAMKELLAVTGYL
                     RGGCSPIGMKKLFPTYIDASAETLDFIIVSAGKIGMQLKLAPQDLARSCDAAFAEIV*
                     "
     gene            1259654..1260133
                     /gene="trnE"
                     /locus_tag="BSU_12060"
                     /old_locus_tag="BSU12060"
     downshifts      1260132
                     /Source="Nicolas_upshifts"
                     /id="D666"
                     /incds=0
                     /nref=4
                     /ntot=100
                     /MaxReadThrough="2.68858"
                     /MaxDrop="3.19616"
                     /score="-5.52314972"
                     /energy="-12.5"
                     /TU="NA"
                     /idTUdmin="U978"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1260173..1260367)
                     /gene="yjzH"
                     /locus_tag="BSU_12069"
                     /old_locus_tag="BSU12069"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="YP_003097709.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12069"
                     /db_xref="EnsemblGenomes-Tr:CAX52599"
                     /db_xref="InterPro:IPR025234"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Z2"
                     /translation="MKEYEFVRVELSTMRRRPKEDYQQIIHDYAKRGWRFVQIFAPSI
                     DGYGAAAYFEIIFERDAEKA*"
     gene            complement(1260173..1260367)
                     /gene="yjzH"
                     /locus_tag="BSU_12069"
                     /old_locus_tag="BSU12069"
     downshifts      complement(1260208)
                     /Source="Nicolas_upshifts"
                     /id="D667"
                     /incds=0
                     /nref=6
                     /ntot=144
                     /MaxReadThrough="7.83072"
                     /MaxDrop="2.95935"
                     /score="-6.07514027"
                     /energy="-7"
                     /TU="U984"
                     /idTUdmin="U987"
                     /TUdmin=220
                     /isTUend="FALSE"
     promotor_-10    complement(1260381..1260396)
                     /Source="Nicolas_upshift_promotors"
                     /id="U984"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1698
                     /SigmaFactorBS="tagtgagtgaaatatactttccgaccttaacctaggttttCG
                     GAACTTCTcgctccattttACGTATACCTTAATAGgagggatcaaacgatgaaagaat
                     a"
                     /listShort="yjzH, S442, yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1260397)
                     /Source="Nicolas_upshifts"
                     /id="U984"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1698
                     /SigmaFactorBS="tagtgagtgaaatatactttccgaccttaacctaggttttCG
                     GAACTTCTcgctccattttACGTATACCTTAATAGgagggatcaaacgatgaaagaat
                     a"
                     /listShort="yjzH, S442, yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1260408..1260417)
                     /Source="Nicolas_upshift_promotors"
                     /id="U984"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1698
                     /SigmaFactorBS="tagtgagtgaaatatactttccgaccttaacctaggttttCG
                     GAACTTCTcgctccattttACGTATACCTTAATAGgagggatcaaacgatgaaagaat
                     a"
                     /listShort="yjzH, S442, yjdH, S441, yjdG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1260533..1260862)
                     /gene="yjdJ"
                     /locus_tag="BSU_12070"
                     /old_locus_tag="BSU12070"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389089.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12070"
                     /db_xref="EnsemblGenomes-Tr:CAB13064"
                     /db_xref="GOA:O31651"
                     /db_xref="InterPro:IPR016508"
                     /db_xref="InterPro:IPR025440"
                     /db_xref="SubtiList:BG13182"
                     /db_xref="UniProtKB/Swiss-Prot:O31651"
                     /translation="MKGIFLVVQLGFSIMVFLFLAAVNWYQGSELVSDRFDWNYTAKL
                     SKLLNGIDAVSSPKQISQLDFFIYSAKHYPVMSALMIISFLYVLAALFLLIYSVKCNK
                     QEIHLDC*"
     gene            complement(1260533..1260862)
                     /gene="yjdJ"
                     /locus_tag="BSU_12070"
                     /old_locus_tag="BSU12070"
     promotor_-10    complement(1260899..1260918)
                     /Source="Nicolas_upshift_promotors"
                     /id="U985"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.428571428571429"
                     /psig="0.994005994005994"
                     /xcortree=3103
                     /SigmaFactorBS="aaatagacttgcgtttgagttgtatggaagtgaaATTGCAag
                     aataacccatacGGTGGTAATATATTGTTTGAttttcccatattcatagatttggagg
                     t"
                     /listShort="yjdJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1260912)
                     /Source="Nicolas_upshifts"
                     /id="U985"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.428571428571429"
                     /psig="0.994005994005994"
                     /xcortree=3103
                     /SigmaFactorBS="aaatagacttgcgtttgagttgtatggaagtgaaATTGCAag
                     aataacccatacGGTGGTAATATATTGTTTGAttttcccatattcatagatttggagg
                     t"
                     /listShort="yjdJ"
                     /GFF_Attribute="listLong"
     S_feature       complement(1260914..1261481)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1278946_1279513_c"
                     /HighExp="S8, S6, nit, S7, ferm, S2, S5, M9-tran, M/G, GM
                     150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigK"
                     /TUshortPSig="0.987, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S443"
     promotor_-35    complement(1260933..1260938)
                     /Source="Nicolas_upshift_promotors"
                     /id="U985"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.428571428571429"
                     /psig="0.994005994005994"
                     /xcortree=3103
                     /SigmaFactorBS="aaatagacttgcgtttgagttgtatggaagtgaaATTGCAag
                     aataacccatacGGTGGTAATATATTGTTTGAttttcccatattcatagatttggagg
                     t"
                     /listShort="yjdJ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1260966..1260970
                     /Source="Nicolas_upshift_promotors"
                     /id="U986"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.996003996003996"
                     /xcortree=2745
                     /SigmaFactorBS="tcttgcaatttcacttccatacaactcaaacgcaagTCTATt
                     tttttgtttgttttTGGCTTATAATACCTGATGAtggaaaaagagtgcgggtttatag
                     a"
                     /listShort="S444"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1260986..1261005
                     /Source="Nicolas_upshift_promotors"
                     /id="U986"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.996003996003996"
                     /xcortree=2745
                     /SigmaFactorBS="tcttgcaatttcacttccatacaactcaaacgcaagTCTATt
                     tttttgtttgttttTGGCTTATAATACCTGATGAtggaaaaagagtgcgggtttatag
                     a"
                     /listShort="S444"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1260990..1261491
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1279022_1279523"
                     /HighExp="LBGstat, C30, HPh, Oxctl, dia15, Paraq, T0.30H,
                     C90, LBGtran, LPh"
                     /AntisenseName="ctaO"
                     /AntisenseCor="-0.43946575370083102"
                     /AntisenseRegPval="-13.4"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.996"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S444"
     upshifts        1260990
                     /Source="Nicolas_upshifts"
                     /id="U986"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.913086913086913"
                     /psig="0.996003996003996"
                     /xcortree=2745
                     /SigmaFactorBS="tcttgcaatttcacttccatacaactcaaacgcaagTCTATt
                     tttttgtttgttttTGGCTTATAATACCTGATGAtggaaaaagagtgcgggtttatag
                     a"
                     /listShort="S444"
                     /GFF_Attribute="listLong"
     CDS             complement(1261482..1262471)
                     /gene="ctaO"
                     /locus_tag="BSU_12080"
                     /old_locus_tag="BSU12080"
                     /EC_number="2.5.1.-"
                     /function="16.10: Respire"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:10675592, 15491161, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10675592, 15491161,
                     15849754, 16850406; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="minor protoheme IX farnesyltransferase 1 (heme
                     Osynthase)"
                     /protein_id="NP_389090.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12080"
                     /db_xref="EnsemblGenomes-Tr:CAB13065"
                     /db_xref="GOA:O31652"
                     /db_xref="InterPro:IPR000537"
                     /db_xref="InterPro:IPR006369"
                     /db_xref="InterPro:IPR030470"
                     /db_xref="SubtiList:BG13183"
                     /db_xref="UniProtKB/Swiss-Prot:O31652"
                     /translation="MQFWGRRLFLENTRDSAAISETKYIKASNRVTIYDFIKLAKPGI
                     IISNSIAAFGGFWIAFASAEKTLTGLAFLMTMVTAMLGTAFVMASGTVYNNYFDRHMD
                     AKMARTRSRASVTGKMPPAMILTYGSVLGIAGLAMLYSLNPLTAFLGLAAFIFYAIIY
                     TVWVKRTSVWSTFVGSFPGAAPPLMGYCAVTGDFSMTAVLLYTIMFLWQPPHFWAIGI
                     RRKEEYRAAGVPLLPVVKGNHVTKIKMMQYIAVLVPVTLLFPFSLGTGHISPFYFLAA
                     LVLGGIWIKKSIKGFKTDDDVKWAKDMFVYSLIYFCLLFFIMMIDSFMMFLIR*"
     gene            complement(1261482..1262471)
                     /gene="ctaO"
                     /locus_tag="BSU_12080"
                     /old_locus_tag="BSU12080"
     promotor_-10    complement(1262472..1262491)
                     /Source="Nicolas_upshift_promotors"
                     /id="U987"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.36963036963037"
                     /psig="0.987012987012987"
                     /xcortree=2978
                     /SigmaFactorBS="aatatcatgacaaatatgggaaataATTGTGattctgtcccc
                     ctCTTGTTACGATAACAAAAGCatgcagttttgggggaggcgtctatttttggagaat
                     a"
                     /listShort="ctaO, S443, yjdJ"
                     /listLong="yjzH"
                     /label="promotor_-10"
     upshifts        complement(1262475)
                     /Source="Nicolas_upshifts"
                     /id="U987"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.36963036963037"
                     /psig="0.987012987012987"
                     /xcortree=2978
                     /SigmaFactorBS="aatatcatgacaaatatgggaaataATTGTGattctgtcccc
                     ctCTTGTTACGATAACAAAAGCatgcagttttgggggaggcgtctatttttggagaat
                     a"
                     /listShort="ctaO, S443, yjdJ"
                     /listLong="yjzH"
     promotor_-35    complement(1262505..1262510)
                     /Source="Nicolas_upshift_promotors"
                     /id="U987"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.36963036963037"
                     /psig="0.987012987012987"
                     /xcortree=2978
                     /SigmaFactorBS="aatatcatgacaaatatgggaaataATTGTGattctgtcccc
                     ctCTTGTTACGATAACAAAAGCatgcagttttgggggaggcgtctatttttggagaat
                     a"
                     /listShort="ctaO, S443, yjdJ"
                     /listLong="yjzH"
                     /label="promotor_-35"
     CDS             complement(1262594..1262842)
                     /gene="cotT"
                     /locus_tag="BSU_12090"
                     /old_locus_tag="BSU12090"
                     /function="16.5: Explore"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:1391045, 1917883, 19933362"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1391045, 1917883,
                     19933362; Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein (inner coat)"
                     /protein_id="NP_389091.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12090"
                     /db_xref="EnsemblGenomes-Tr:CAB13066"
                     /db_xref="GOA:P11863"
                     /db_xref="SubtiList:BG10495"
                     /db_xref="UniProtKB/Swiss-Prot:P11863"
                     /translation="MDYPLNEQSFEQITPYDERQPYYYPRPRPPFYPPYYYPRPYYPF
                     YPFYPRPPYYYPRPRPPYYPWYGYGGGYGGGYGGGYGY*"
     gene            complement(1262594..1262842)
                     /gene="cotT"
                     /locus_tag="BSU_12090"
                     /old_locus_tag="BSU12090"
     downshifts      complement(1262604)
                     /Source="Nicolas_upshifts"
                     /id="D668"
                     /incds=0
                     /nref=37
                     /ntot=82
                     /MaxReadThrough="5.73194"
                     /MaxDrop="6.23577"
                     /score="25.0951218"
                     /energy="-8.4"
                     /TU="U989"
                     /idTUdmin="U990"
                     /TUdmin=2
                     /isTUend="TRUE"
     promotor_-35    1262838..1262842
                     /Source="Nicolas_upshift_promotors"
                     /id="U988"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=705
                     /SigmaFactorBS="gggtaatttgttcaaatgactgttcattcaaagggtaaTCCA
                     AgaggaaaaCCTCCCTAGCTTTTTttattccttttaccatattcctgatgcttaagtt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1262851..1262865
                     /Source="Nicolas_upshift_promotors"
                     /id="U988"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=705
                     /SigmaFactorBS="gggtaatttgttcaaatgactgttcattcaaagggtaaTCCA
                     AgaggaaaaCCTCCCTAGCTTTTTttattccttttaccatattcctgatgcttaagtt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1262860
                     /Source="Nicolas_upshifts"
                     /id="U988"
                     /multdbtbs="-"
                     /comp="M15"
                     /sig="Sig-"
                     /pcomp=1
                     /psig=0
                     /xcortree=705
                     /SigmaFactorBS="gggtaatttgttcaaatgactgttcattcaaagggtaaTCCA
                     AgaggaaaaCCTCCCTAGCTTTTTttattccttttaccatattcctgatgcttaagtt
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1262867..1262886)
                     /Source="Nicolas_upshift_promotors"
                     /id="U989"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1278
                     /SigmaFactorBS="ataaaaaaaaccgaatttcatgaatgtACATACACCCaactt
                     aagcatcaGGAATATGGTAAAAGGAATAaaaaaagctagggaggttttcctcttggat
                     t"
                     /listShort="cotT, ctaO, S443"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1262876)
                     /Source="Nicolas_upshifts"
                     /id="U989"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1278
                     /SigmaFactorBS="ataaaaaaaaccgaatttcatgaatgtACATACACCCaactt
                     aagcatcaGGAATATGGTAAAAGGAATAaaaaaagctagggaggttttcctcttggat
                     t"
                     /listShort="cotT, ctaO, S443"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1262900..1262909)
                     /Source="Nicolas_upshift_promotors"
                     /id="U989"
                     /multdbtbs="SigK"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1278
                     /SigmaFactorBS="ataaaaaaaaccgaatttcatgaatgtACATACACCCaactt
                     aagcatcaGGAATATGGTAAAAGGAATAaaaaaagctagggaggttttcctcttggat
                     t"
                     /listShort="cotT, ctaO, S443"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1262957..1262964
                     /Source="Nicolas_upshift_promotors"
                     /id="U991"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.713286713286713"
                     /psig="0.994005994005994"
                     /xcortree=1545
                     /SigmaFactorBS="ttttatgatgaaattccttaaaaaggATTGACATgaacttct
                     aaatcTCATAGTATTACAAATGTGAaataaatgttactacaatgttacaaaaacattt
                     c"
                     /listShort="S445, yjeA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1262971..1262990)
                     /Source="Nicolas_upshift_promotors"
                     /id="U990"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.433566433566434"
                     /psig="0.684315684315684"
                     /xcortree=2052
                     /SigmaFactorBS="atctatttagaaatgtttttgtaacattgTAGTAACAtttat
                     ttcacattTGTAATACTATGAGATTTAGaagttcatgtcaatcctttttaaggaattt
                     c"
                     /listShort="cotT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    1262978..1262997
                     /Source="Nicolas_upshift_promotors"
                     /id="U991"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.713286713286713"
                     /psig="0.994005994005994"
                     /xcortree=1545
                     /SigmaFactorBS="ttttatgatgaaattccttaaaaaggATTGACATgaacttct
                     aaatcTCATAGTATTACAAATGTGAaataaatgttactacaatgttacaaaaacattt
                     c"
                     /listShort="S445, yjeA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1262980)
                     /Source="Nicolas_upshifts"
                     /id="U990"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.433566433566434"
                     /psig="0.684315684315684"
                     /xcortree=2052
                     /SigmaFactorBS="atctatttagaaatgtttttgtaacattgTAGTAACAtttat
                     ttcacattTGTAATACTATGAGATTTAGaagttcatgtcaatcctttttaaggaattt
                     c"
                     /listShort="cotT"
                     /GFF_Attribute="listLong"
     upshifts        1262991
                     /Source="Nicolas_upshifts"
                     /id="U991"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.713286713286713"
                     /psig="0.994005994005994"
                     /xcortree=1545
                     /SigmaFactorBS="ttttatgatgaaattccttaaaaaggATTGACATgaacttct
                     aaatcTCATAGTATTACAAATGTGAaataaatgttactacaatgttacaaaaacattt
                     c"
                     /listShort="S445, yjeA"
                     /GFF_Attribute="listLong"
     S_feature       1262992..1263095
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1281024_1281127"
                     /HighExp="Heat, T0.30H, T1.0H, ferm, Diami, dia5, T1.30H,
                     M9-stat, T3.0H, T2.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.994"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S445"
     promotor_-35    complement(1263004..1263011)
                     /Source="Nicolas_upshift_promotors"
                     /id="U990"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.433566433566434"
                     /psig="0.684315684315684"
                     /xcortree=2052
                     /SigmaFactorBS="atctatttagaaatgtttttgtaacattgTAGTAACAtttat
                     ttcacattTGTAATACTATGAGATTTAGaagttcatgtcaatcctttttaaggaattt
                     c"
                     /listShort="cotT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1263096..1264499
                     /gene="pdaC"
                     /locus_tag="BSU_12100"
                     /old_locus_tag="BSU12100"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:14679227, 17878218, 22277649"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14679227, 17878218,
                     22277649; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid deacetylase"
                     /protein_id="NP_389092.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12100"
                     /db_xref="EnsemblGenomes-Tr:CAB13067"
                     /db_xref="GOA:O34798"
                     /db_xref="InterPro:IPR002509"
                     /db_xref="InterPro:IPR011330"
                     /db_xref="InterPro:IPR017219"
                     /db_xref="InterPro:IPR021729"
                     /db_xref="InterPro:IPR025303"
                     /db_xref="InterPro:IPR037126"
                     /db_xref="SubtiList:BG13184"
                     /db_xref="UniProtKB/Swiss-Prot:O34798"
                     /translation="MLAKRIKWFHVLIAVVCVVGLIGFFHNHSLKKETVMNKVRTDSQ
                     YGNVEIATLVNDGKTFNYAVNYPVFKNEKMDSALKRFAEKEVRQFQKETKDVDQEHTT
                     KRNELNVDYKIVHYAKQTVAIVFNEYKYIGGAHGQTVKKTFNYDFSKQAFLSIDDIFK
                     EDADYLHKLSLIAYHELKKNKDIAADDALLKEGTAPKKENFSRFAIKEDYIELYFDTY
                     QVAAGYLGEQSIAIKKSLLKDILKEQYIDKAKNKNKIKEQKPKHEVISLPKEETVDPN
                     QKVIALTFDDGPNPATTNQILDSLKKYKGHATFFVLGSRVQYYPETLIRMLKEGNEVG
                     NHSWSHPLLTRLSVKEALKQINDTQDIIEKISGYRPTLVRPPYGGINDELRSQMKMDV
                     ALWDVDPEDWKDRNKKTIVDRVMNQAGDGRTILIHDIYRTSADAADEIIKKLTDQGYQ
                     LVTVSQLEEVKKQREAK*"
     gene            1263096..1264499
                     /gene="pdaC"
                     /locus_tag="BSU_12100"
                     /old_locus_tag="BSU12100"
     downshifts      1264488
                     /Source="Nicolas_upshifts"
                     /id="D669"
                     /incds=0
                     /nref=173
                     /ntot=238
                     /MaxReadThrough="1.38483"
                     /MaxDrop="6.60322"
                     /score="39.935002"
                     /energy="-13.8"
                     /TU="NA"
                     /idTUdmin="U991"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1264539..1265012)
                     /gene="yjfA"
                     /locus_tag="BSU_12110"
                     /old_locus_tag="BSU12110"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389093.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12110"
                     /db_xref="EnsemblGenomes-Tr:CAB13068"
                     /db_xref="InterPro:IPR021224"
                     /db_xref="SubtiList:BG13185"
                     /db_xref="UniProtKB/Swiss-Prot:O34554"
                     /translation="MKRLFMKASLVLFAVVFVFAVKGAPAKAETHAYDGKSPYYNDCA
                     SSGSTKKSSNLVNASNQVIGVVELKFSSTCKTAWAKITMNNTLTSGYEANAEITRNTD
                     GKRYNCDSAGGNGKAVAGQKSCYTPMVYDLDPRTSYAFGKYSGPNLNVWATTGSY*"
     gene            complement(1264539..1265012)
                     /gene="yjfA"
                     /locus_tag="BSU_12110"
                     /old_locus_tag="BSU12110"
     downshifts      complement(1264543)
                     /Source="Nicolas_upshifts"
                     /id="D670"
                     /incds=0
                     /nref=33
                     /ntot=176
                     /MaxReadThrough="2.25434"
                     /MaxDrop="5.38548"
                     /score="20.5383759"
                     /energy="-13.8"
                     /TU="NA"
                     /idTUdmin="U992"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     promotor_-10    complement(1265034..1265052)
                     /Source="Nicolas_upshift_promotors"
                     /id="U992"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1105
                     /SigmaFactorBS="ctccatcctcccggccgcctttattgttcacaaaaaagcaTG
                     CATGttttgattgttcctCCATATGATTTATTGTTTGccatattaaggaggtcataaa
                     t"
                     /listShort="yjfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1265052)
                     /Source="Nicolas_upshifts"
                     /id="U992"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1105
                     /SigmaFactorBS="ctccatcctcccggccgcctttattgttcacaaaaaagcaTG
                     CATGttttgattgttcctCCATATGATTTATTGTTTGccatattaaggaggtcataaa
                     t"
                     /listShort="yjfA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1265067..1265072)
                     /Source="Nicolas_upshift_promotors"
                     /id="U992"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.994005994005994"
                     /psig="0.994005994005994"
                     /xcortree=1105
                     /SigmaFactorBS="ctccatcctcccggccgcctttattgttcacaaaaaagcaTG
                     CATGttttgattgttcctCCATATGATTTATTGTTTGccatattaaggaggtcataaa
                     t"
                     /listShort="yjfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1265137..1265304)
                     /gene="yjfB"
                     /locus_tag="BSU_12120"
                     /old_locus_tag="BSU12120"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15033535"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389094.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12120"
                     /db_xref="EnsemblGenomes-Tr:CAB13069"
                     /db_xref="InterPro:IPR025906"
                     /db_xref="SubtiList:BG13186"
                     /db_xref="UniProtKB/Swiss-Prot:O34438"
                     /translation="MDIPALSVAMHQASLAQNVNIALTKKRLDTAQQNADQTLKMIQH
                     PTLGQTIDVKA*"
     gene            complement(1265137..1265304)
                     /gene="yjfB"
                     /locus_tag="BSU_12120"
                     /old_locus_tag="BSU12120"
     downshifts      complement(1265140)
                     /Source="Nicolas_upshifts"
                     /id="D671"
                     /incds=0
                     /nref=109
                     /ntot=232
                     /MaxReadThrough="3.53249"
                     /MaxDrop="4.93218"
                     /score="-9.08395816"
                     /energy="-13.9"
                     /TU="U993"
                     /idTUdmin="U993"
                     /TUdmin="-576"
                     /isTUend="FALSE"
     promotor_-10    complement(1265316..1265334)
                     /Source="Nicolas_upshift_promotors"
                     /id="U993"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2829
                     /SigmaFactorBS="gggtcaacaagagaaattaagccatttttcaCTGTAAAAtca
                     tacaaacccGCCGATAGGTAAGGCATAGgaggtggaaccatggatattcctgctttat
                     c"
                     /listShort="yjfB, yjfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1265325)
                     /Source="Nicolas_upshifts"
                     /id="U993"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2829
                     /SigmaFactorBS="gggtcaacaagagaaattaagccatttttcaCTGTAAAAtca
                     tacaaacccGCCGATAGGTAAGGCATAGgaggtggaaccatggatattcctgctttat
                     c"
                     /listShort="yjfB, yjfA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1265347..1265354)
                     /Source="Nicolas_upshift_promotors"
                     /id="U993"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2829
                     /SigmaFactorBS="gggtcaacaagagaaattaagccatttttcaCTGTAAAAtca
                     tacaaacccGCCGATAGGTAAGGCATAGgaggtggaaccatggatattcctgctttat
                     c"
                     /listShort="yjfB, yjfA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1265431..1266330
                     /gene="yjfC"
                     /locus_tag="BSU_12130"
                     /old_locus_tag="BSU12130"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389095.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12130"
                     /db_xref="EnsemblGenomes-Tr:CAB13070"
                     /db_xref="InterPro:IPR018728"
                     /db_xref="SubtiList:BG13187"
                     /db_xref="UniProtKB/Swiss-Prot:O34458"
                     /translation="MNLVMEKTFEQYEKLFSMEEQKREDVFRYTMMRPFEKMWTAIQV
                     PLKAKEPNGYDVIMAAKMLGYLDVRDAESGQKALQILKESHVSETAESALRQCIFFAE
                     REQLRVNAKEIKFGLYIADPNKLQLQKGYCGFGGIPGFIHVWINPNSYNLPRIPSIIA
                     HEFHHNVRFSYIDFHHGSVSVGDYLVIEGLAESFARELFGTERLGPWVTRFDHEDLQY
                     SIDVINEVLDVKGFSEVSRYMFGDPIANDQGFKPAGLSAFAGYAVGYHAVQSFMNQHH
                     ITISEATRLDAKTIISQCGLFST*"
     gene            1265431..1266330
                     /gene="yjfC"
                     /locus_tag="BSU_12130"
                     /old_locus_tag="BSU12130"
     CDS             complement(1266339..1266737)
                     /gene="yjgA"
                     /locus_tag="BSU_12140"
                     /old_locus_tag="BSU12140"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 15849754, 16850406"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein"
                     /protein_id="NP_389096.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12140"
                     /db_xref="EnsemblGenomes-Tr:CAB13071"
                     /db_xref="GOA:O35027"
                     /db_xref="InterPro:IPR021257"
                     /db_xref="SubtiList:BG13188"
                     /db_xref="UniProtKB/Swiss-Prot:O35027"
                     /translation="MKRNRWIYAVFTILIIGLGLGSRAFSSVLPDTLNTYLGDSLWAA
                     MIFTGCGFLFRKLKTMITGIISLSFCFVIEFSQLYHAEWIDQIRDTSLGGLVLGYGFL
                     WSDIEAYTIGIAACAAIELLVLGIKKRRCM*"
     gene            complement(1266339..1266737)
                     /gene="yjgA"
                     /locus_tag="BSU_12140"
                     /old_locus_tag="BSU12140"
     downshifts      complement(1266369)
                     /Source="Nicolas_upshifts"
                     /id="D672"
                     /incds=0
                     /nref=2
                     /ntot=27
                     /MaxReadThrough="2.86089"
                     /MaxDrop="2.52307"
                     /score="23.8106216"
                     /energy="-10.1"
                     /TU="U994,U995"
                     /idTUdmin="U995"
                     /TUdmin="-243"
                     /isTUend="FALSE"
     promotor_-10    complement(1266766..1266785)
                     /Source="Nicolas_upshift_promotors"
                     /id="U994"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig=1
                     /xcortree=1954
                     /SigmaFactorBS="caaaataaacaccctacgcggctattcagccgctttttTAGT
                     GGACaaataaaagctataTTCCTTACAATACAGGGAGAtgaagcagagacggggtatc
                     a"
                     /listShort="yjgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1266785)
                     /Source="Nicolas_upshifts"
                     /id="U994"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig=1
                     /xcortree=1954
                     /SigmaFactorBS="caaaataaacaccctacgcggctattcagccgctttttTAGT
                     GGACaaataaaagctataTTCCTTACAATACAGGGAGAtgaagcagagacggggtatc
                     a"
                     /listShort="yjgA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1266800..1266807)
                     /Source="Nicolas_upshift_promotors"
                     /id="U994"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.915084915084915"
                     /psig=1
                     /xcortree=1954
                     /SigmaFactorBS="caaaataaacaccctacgcggctattcagccgctttttTAGT
                     GGACaaataaaagctataTTCCTTACAATACAGGGAGAtgaagcagagacggggtatc
                     a"
                     /listShort="yjgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1266838..1267413)
                     /gene="yjgB"
                     /locus_tag="BSU_12150"
                     /old_locus_tag="BSU12150"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 1580552"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_389097.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12150"
                     /db_xref="EnsemblGenomes-Tr:CAB13072"
                     /db_xref="InterPro:IPR025453"
                     /db_xref="PDB:4YGT"
                     /db_xref="SubtiList:BG13189"
                     /db_xref="UniProtKB/Swiss-Prot:O34960"
                     /translation="MKKTMSAITAAAAVTSCFTGFGAASFSAPAKAAAQTNTLSENTN
                     QSAAELVKNLYNTAYKGEMPQQAQGLTINKSTKGDVHAAFGEPERPVGGDNRFDLYHW
                     NMGQPGYGFSYHKDMTISEIRYFGTGVERQLNLGGVTPEVLQKQLGPVNRVLTVPFTD
                     EIDYVYDTGRYELHFVIGTDQTADHVNLKAK*"
     gene            complement(1266838..1267413)
                     /gene="yjgB"
                     /locus_tag="BSU_12150"
                     /old_locus_tag="BSU12150"
     downshifts      complement(1266853)
                     /Source="Nicolas_upshifts"
                     /id="D673"
                     /incds=0
                     /nref=3
                     /ntot=16
                     /MaxReadThrough="5.38565"
                     /MaxDrop="3.9021"
                     /score="23.8106216"
                     /energy="-10.1"
                     /TU="U995"
                     /idTUdmin="U995"
                     /TUdmin="-727"
                     /isTUend="FALSE"
     promotor_-10    complement(1267432..1267450)
                     /Source="Nicolas_upshift_promotors"
                     /id="U995"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=183
                     /SigmaFactorBS="tacaacaactcaataaaacatacaaagcgcactcacaTGTTT
                     CGttgcaaaaacacgGGGAAACGGAATGGTAGATcaattaggagggattaacatgaaa
                     a"
                     /listShort="yjgB, yjgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1267447)
                     /Source="Nicolas_upshifts"
                     /id="U995"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=183
                     /SigmaFactorBS="tacaacaactcaataaaacatacaaagcgcactcacaTGTTT
                     CGttgcaaaaacacgGGGAAACGGAATGGTAGATcaattaggagggattaacatgaaa
                     a"
                     /listShort="yjgB, yjgA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1267464..1267470)
                     /Source="Nicolas_upshift_promotors"
                     /id="U995"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=183
                     /SigmaFactorBS="tacaacaactcaataaaacatacaaagcgcactcacaTGTTT
                     CGttgcaaaaacacgGGGAAACGGAATGGTAGATcaattaggagggattaacatgaaa
                     a"
                     /listShort="yjgB, yjgA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1267488..1267494
                     /Source="Nicolas_upshift_promotors"
                     /id="U996"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=186
                     /SigmaFactorBS="ccgtgtttttgcaacgaaacatgtgagtgcgctttgtaTGTT
                     TTAttgagttgttgtaaGGGAACTGAAATAGGTAATtcggtatataaagcaagaaagg
                     g"
                     /listShort="yjgC, yjgD, S446, yjhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1267509..1267527
                     /Source="Nicolas_upshift_promotors"
                     /id="U996"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=186
                     /SigmaFactorBS="ccgtgtttttgcaacgaaacatgtgagtgcgctttgtaTGTT
                     TTAttgagttgttgtaaGGGAACTGAAATAGGTAATtcggtatataaagcaagaaagg
                     g"
                     /listShort="yjgC, yjgD, S446, yjhA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1267510
                     /Source="Nicolas_upshifts"
                     /id="U996"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=186
                     /SigmaFactorBS="ccgtgtttttgcaacgaaacatgtgagtgcgctttgtaTGTT
                     TTAttgagttgttgtaaGGGAACTGAAATAGGTAATtcggtatataaagcaagaaagg
                     g"
                     /listShort="yjgC, yjgD, S446, yjhA"
                     /GFF_Attribute="listLong"
     CDS             1267559..1270516
                     /gene="yjgC"
                     /locus_tag="BSU_12160"
                     /old_locus_tag="BSU12160"
                     /EC_number="1.2.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative molybdoenzyme; putative formate
                     dehydrogenase"
                     /protein_id="NP_389098.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12160"
                     /db_xref="EnsemblGenomes-Tr:CAB13073"
                     /db_xref="GOA:O34720"
                     /db_xref="InterPro:IPR001041"
                     /db_xref="InterPro:IPR006478"
                     /db_xref="InterPro:IPR006656"
                     /db_xref="InterPro:IPR006657"
                     /db_xref="InterPro:IPR006963"
                     /db_xref="InterPro:IPR009010"
                     /db_xref="InterPro:IPR012675"
                     /db_xref="InterPro:IPR017896"
                     /db_xref="InterPro:IPR017900"
                     /db_xref="InterPro:IPR019574"
                     /db_xref="InterPro:IPR036010"
                     /db_xref="SubtiList:BG13190"
                     /db_xref="UniProtKB/Swiss-Prot:O34720"
                     /translation="MAGKKTITINGVEMEASEEQTVLQLLNNSSIEVPQVCYHPSLGP
                     IETCDTCIVSINGELKRSCSAELKDGDVIDTLSPDVKKAQVIGMDKILYNHELYCTVC
                     DYNNGGCEIHNTVKEMKINHQSIPFDHKPYHKDESHPFYRYDPDQCILCGRCVEACQD
                     VQVTETLTIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMMEKGMEGEAGYL
                     TGINNETLRPMIEITKGVETGYGSILAISDMESAMRDERIKKTKTVCTYCGVGCSFDV
                     WTKGRDILKVEPQEEAPANGISTCVKGKFGWDFVNSEERLTKPLIREGDHFREAEWEE
                     ALLLIASKFTELKEAFGPDSLAFITSSKCTNEESYLMQKLARGVIGTNNVDNCSRYCQ
                     SPATAGLFRTVGYGGDSGSITDIAQADLVLIIGSNTSESHPVLSTRIKRAHKLRGQKV
                     IVADIRKHEMAERSDLFVQPRAGSDIVWLNAIAKYLIENGKADERFLRERVNGRDEYV
                     KSLAPYTLEYAEEKTGIDQETLIQMAEMIGQADSVCALWAMGVTQHIGGSDTSTAISN
                     LLLVTGNYGKPGAGSYPLRGHNNVQGASDFGSMPDRLPGYEKVTDEQVRQKYERVWGV
                     PLPKEPGMTNHEMIEKIHSGQLKAMYVKGEEMGLVDSNINHVHAAYEKLDFFVVQDIF
                     LSRTAEFADVVLPASPSLEKEGTFTNTERRIQRLYQVFEPLGESKPDWQIIMEVANKL
                     GAGWLYEHPADIMEEAAKLSPIYAGVTYERLEGYNSLQWPVNADGKDSPLLFTERFPF
                     PDGKAILYPVQWTEPKEFGEEYDIHVNNGRLLEHFHEGNLTYKSKGISEKTPEVFLEI
                     SPELAAERGIQDGTLVRLTSPFGNVKVKCLITDRVKGKEVYLPMNDSGEAAINLLTGS
                     HADKDTDTPAYKETSAKMEILKHDGISPLPKINHRNGNPQPQIGVQVHKKWARKDYIF
                     PGDAVKRGMGHNG*"
     gene            1267559..1270516
                     /gene="yjgC"
                     /locus_tag="BSU_12160"
                     /old_locus_tag="BSU12160"
     CDS             1270509..1271069
                     /gene="yjgD"
                     /locus_tag="BSU_12170"
                     /old_locus_tag="BSU12170"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389099.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12170"
                     /db_xref="EnsemblGenomes-Tr:CAB13074"
                     /db_xref="InterPro:IPR012440"
                     /db_xref="SubtiList:BG13191"
                     /db_xref="UniProtKB/Swiss-Prot:O34681"
                     /translation="MAKAIKRIQKIEVTEEDQRKRDLREIEDALIDHKEAILETLHML
                     GHMNERGVLPLLRGLFGQGDKVLDILVKKADTEETANTLKNLLLLFGTLGMLDVKQLE
                     PLILKVNAGVASAVEQKNSEEKTGYFDIIRSLKDPEINKSITLLFSFLKGMGQDTKEL
                     ERTTQPPEHQKHHQEPREKRGMNKRD*"
     gene            1270509..1271069
                     /gene="yjgD"
                     /locus_tag="BSU_12170"
                     /old_locus_tag="BSU12170"
     downshifts      1271062
                     /Source="Nicolas_upshifts"
                     /id="D674"
                     /incds=0
                     /nref=18
                     /ntot=84
                     /MaxReadThrough="5.25706"
                     /MaxDrop="6.46184"
                     /score="20.7921843"
                     /energy="-15"
                     /TU="U996"
                     /idTUdmin="U996"
                     /TUdmin="-819"
                     /isTUend="FALSE"
     S_feature       1271107..1271225
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1289139_1289257"
                     /HighExp="Etha, Salt, Heat, S8, M9-stat, S7, LPhT, G135,
                     C30, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S446"
     promotor_-35    1271203..1271206
                     /Source="Nicolas_upshift_promotors"
                     /id="U997"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.998001998001998"
                     /xcortree=2980
                     /SigmaFactorBS="tgatgaatgagatagaaataatcgttactttcttacCTGTta
                     agaaaagggaaaaTCTGATTATAATAGAAATCGattactttagatgggggaacaatca
                     t"
                     /listShort="yjhA, yjhB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1271222..1271241
                     /Source="Nicolas_upshift_promotors"
                     /id="U997"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.998001998001998"
                     /xcortree=2980
                     /SigmaFactorBS="tgatgaatgagatagaaataatcgttactttcttacCTGTta
                     agaaaagggaaaaTCTGATTATAATAGAAATCGattactttagatgggggaacaatca
                     t"
                     /listShort="yjhA, yjhB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1271227
                     /Source="Nicolas_upshifts"
                     /id="U997"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.779220779220779"
                     /psig="0.998001998001998"
                     /xcortree=2980
                     /SigmaFactorBS="tgatgaatgagatagaaataatcgttactttcttacCTGTta
                     agaaaagggaaaaTCTGATTATAATAGAAATCGattactttagatgggggaacaatca
                     t"
                     /listShort="yjhA, yjhB"
                     /GFF_Attribute="listLong"
     CDS             1271266..1271907
                     /gene="yjhA"
                     /locus_tag="BSU_12180"
                     /old_locus_tag="BSU12180"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipoprotein"
                     /protein_id="NP_389100.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12180"
                     /db_xref="EnsemblGenomes-Tr:CAB13075"
                     /db_xref="GOA:O34725"
                     /db_xref="InterPro:IPR029050"
                     /db_xref="InterPro:IPR029051"
                     /db_xref="PDB:3CFU"
                     /db_xref="SubtiList:BG13192"
                     /db_xref="UniProtKB/Swiss-Prot:O34725"
                     /translation="MKKVLLLLFVLTIGLALSACSQSSDASEKEKPKEKKSQEELEKE
                     LDKELKKGGEPKTKKDDQIHKIGETFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETK
                     TIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTL
                     VSGKKVTGVLSYVIPKGEQKHYTLVYNPFLADTNSSNTEERVKDDIDYLVKLD*"
     gene            1271266..1271907
                     /gene="yjhA"
                     /locus_tag="BSU_12180"
                     /old_locus_tag="BSU12180"
     downshifts      complement(1271275)
                     /Source="Nicolas_upshifts"
                     /id="D675"
                     /incds=0
                     /nref=7
                     /ntot=57
                     /MaxReadThrough="2.5769"
                     /MaxDrop="3.81596"
                     /score="-9.34186213"
                     /energy="-3"
                     /TU="NA"
                     /idTUdmin="U998"
                     /TUdmin=1386
                     /isTUend="FALSE"
     downshifts      1271880
                     /Source="Nicolas_upshifts"
                     /id="D676"
                     /incds=0
                     /nref=24
                     /ntot=186
                     /MaxReadThrough="4.29897"
                     /MaxDrop="3.4683"
                     /score="19.6571267"
                     /energy="-17"
                     /TU="U997"
                     /idTUdmin="U996"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             1271986..1272612
                     /gene="yjhB"
                     /locus_tag="BSU_12190"
                     /old_locus_tag="BSU12190"
                     /EC_number="3.6.1.-"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12483591, 16513759;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ADP-ribose pyrophosphatase"
                     /protein_id="NP_389101.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12190"
                     /db_xref="EnsemblGenomes-Tr:CAB13076"
                     /db_xref="GOA:C0SPC3"
                     /db_xref="InterPro:IPR000086"
                     /db_xref="InterPro:IPR015797"
                     /db_xref="SubtiList:BG13193"
                     /db_xref="UniProtKB/Swiss-Prot:C0SPC3"
                     /translation="MIKVQTKWLERAQRIRAIAQAGLAFSKDVYDRERYEELMKLSAE
                     MMADYSEKDIEVITDLWQGEKGYPTPKADVRGAVFRENQILLVREKHDELWSLPGGFC
                     EIGLSPAENVVKEIKEESGYDTEPSRLLAVLDSHKHSHPPQPYHYYKIFIACSMTDGQ
                     GETGIETNHAAFFPEDRLPPLSPKRNTPSQLSMLFDFLRHPDKKTIFD*"
     gene            1271986..1272612
                     /gene="yjhB"
                     /locus_tag="BSU_12190"
                     /old_locus_tag="BSU12190"
     downshifts      1272614
                     /Source="Nicolas_upshifts"
                     /id="D677"
                     /incds=0
                     /nref=97
                     /ntot=202
                     /MaxReadThrough="0.597580000000001"
                     /MaxDrop="6.62023"
                     /score="12.2319602"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U997"
                     /TUdmin=7
                     /isTUend="TRUE"
     downshifts      complement(1272617)
                     /Source="Nicolas_upshifts"
                     /id="D678"
                     /incds=0
                     /nref=1
                     /ntot=9
                     /MaxReadThrough="0.18907"
                     /MaxDrop="3.31161"
                     /score="10.5815896"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U998"
                     /TUdmin=44
                     /isTUend="FALSE"
     CDS             complement(1272643..1272921)
                     /gene="yjiA"
                     /locus_tag="BSU_12200"
                     /old_locus_tag="BSU12200"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function; PubMedId : 14563871"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_389102.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12200"
                     /db_xref="EnsemblGenomes-Tr:CAB13077"
                     /db_xref="SubtiList:BG13194"
                     /db_xref="UniProtKB/Swiss-Prot:O34679"
                     /translation="MAAQTDYKKQVVGILLSLAFVLFVFSFSERHEKPLVEGKKQENW
                     HTVVDKASVKIYGSRLVEENKLKQKLGHKQADSILTLLKLANEKHITL*"
     gene            complement(1272643..1272921)
                     /gene="yjiA"
                     /locus_tag="BSU_12200"
                     /old_locus_tag="BSU12200"
     downshifts      complement(1272661)
                     /Source="Nicolas_upshifts"
                     /id="D679"
                     /incds=0
                     /nref=162
                     /ntot=247
                     /MaxReadThrough="1.96302"
                     /MaxDrop="5.98058"
                     /score="10.5815896"
                     /energy="-7"
                     /TU="NA"
                     /idTUdmin="U998"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(1272950..1272961)
                     /Source="Nicolas_upshift_promotors"
                     /id="U998"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.972027972027972"
                     /xcortree=575
                     /SigmaFactorBS="gtctctgttttcaaccaaatgcactaactccaaaaatgactt
                     tcccattatgtaaaataaTTTGGTTcTATGATTAAATAgaaggtaaaaggtgaaggag
                     a"
                     /listShort="yjiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-35    complement(1272963..1272969)
                     /Source="Nicolas_upshift_promotors"
                     /id="U998"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.972027972027972"
                     /xcortree=575
                     /SigmaFactorBS="gtctctgttttcaaccaaatgcactaactccaaaaatgactt
                     tcccattatgtaaaataaTTTGGTTcTATGATTAAATAgaaggtaaaaggtgaaggag
                     a"
                     /listShort="yjiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        complement(1272969)
                     /Source="Nicolas_upshifts"
                     /id="U998"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.632367632367632"
                     /psig="0.972027972027972"
                     /xcortree=575
                     /SigmaFactorBS="gtctctgttttcaaccaaatgcactaactccaaaaatgactt
                     tcccattatgtaaaataaTTTGGTTcTATGATTAAATAgaaggtaaaaggtgaaggag
                     a"
                     /listShort="yjiA"
                     /GFF_Attribute="listLong"
     S_feature       complement(1272971..1273387)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1291003_1291419_c"
                     /HighExp="S6, S7, S8, S5, BT, C30, Pyr, G/S, C90, B36"
                     /AntisenseName="yjiB"
                     /AntisenseCor="-0.25565388711625397"
                     /AntisenseRegPval="-4.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S447"
     upshifts        1273139
                     /Source="Nicolas_upshifts"
                     /id="U999"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.766233766233766"
                     /psig=1
                     /xcortree=3183
                     /SigmaFactorBS="tatgcctaaggtcacgttgtgagccaaaacagcagtgcagaa
                     tagaaaaaaattgaaagatTATGGTAAGATGAACGAAATtcgagggggaatatatgat
                     g"
                     /listShort="S448, yjiB, yjiC"
                     /GFF_Attribute="listLong"
     misc_feature    1273140..1273159
                     /Source="Nicolas_upshift_promotors"
                     /id="U999"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.766233766233766"
                     /psig=1
                     /xcortree=3183
                     /SigmaFactorBS="tatgcctaaggtcacgttgtgagccaaaacagcagtgcagaa
                     tagaaaaaaattgaaagatTATGGTAAGATGAACGAAATtcgagggggaatatatgat
                     g"
                     /listShort="S448, yjiB, yjiC"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1273157..1273311
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1291189_1291343"
                     /HighExp="BC, T5.0H, T4.0H, C90, Sw, T3.30H, Lbstat,
                     Diami, dia5, S2"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.995811"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S448"
     CDS             1273312..1274502
                     /gene="cypE"
                     /locus_tag="BSU_12210"
                     /old_locus_tag="BSU12210"
                     /EC_number="1.14.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:25587700"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 25587700; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450 CYP109B1, monooxygenase"
                     /protein_id="NP_389103.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12210"
                     /db_xref="EnsemblGenomes-Tr:CAB13078"
                     /db_xref="GOA:O34374"
                     /db_xref="InterPro:IPR001128"
                     /db_xref="InterPro:IPR002397"
                     /db_xref="InterPro:IPR017972"
                     /db_xref="InterPro:IPR036396"
                     /db_xref="PDB:4RM4"
                     /db_xref="SubtiList:BG13195"
                     /db_xref="UniProtKB/Swiss-Prot:O34374"
                     /translation="MNVLNRRQALQRALLNGKNKQDAYHPFPWYESMRKDAPVSFDEE
                     NQVWSVFLYDDVKKVVGDKELFSSCMPQQTSSIGNSIINMDPPKHTKIRSVVNKAFTP
                     RVMKQWEPRIQEITDELIQKFQGRSEFDLVHDFSYPLPVIVISELLGVPSAHMEQFKA
                     WSDLLVSTPKDKSEEAEKAFLEERDKCEEELAAFFAGIIEEKRNKPEQDIISILVEAE
                     ETGEKLSGEELIPFCTLLLVAGNETTTNLISNAMYSILETPGVYEELRSHPELMPQAV
                     EEALRFRAPAPVLRRIAKRDTEIGGHLIKEGDMVLAFVASANRDEAKFDRPHMFDIRR
                     HPNPHIAFGHGIHFCLGAPLARLEANIALTSLISAFPHMECVSITPIENSVIYGLKSF
                     RVKM*"
     gene            1273312..1274502
                     /gene="cypE"
                     /locus_tag="BSU_12210"
                     /old_locus_tag="BSU12210"
     promotor_-10    complement(1273385..1273404)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1000"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1374
                     /SigmaFactorBS="ggttttcttcatcaaaggaaACAGGCGCATcctttctcatcg
                     aTTCATACCATGGAAACGGATgatacgcatcctgtttgtttttcccattgagcagcgc
                     t"
                     /listShort="S447, yjiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1273387)
                     /Source="Nicolas_upshifts"
                     /id="U1000"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1374
                     /SigmaFactorBS="ggttttcttcatcaaaggaaACAGGCGCATcctttctcatcg
                     aTTCATACCATGGAAACGGATgatacgcatcctgtttgtttttcccattgagcagcgc
                     t"
                     /listShort="S447, yjiA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1273418..1273427)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1000"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp=1
                     /psig=1
                     /xcortree=1374
                     /SigmaFactorBS="ggttttcttcatcaaaggaaACAGGCGCATcctttctcatcg
                     aTTCATACCATGGAAACGGATgatacgcatcctgtttgtttttcccattgagcagcgc
                     t"
                     /listShort="S447, yjiA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1274525..1275703
                     /gene="ppuG"
                     /locus_tag="BSU_12220"
                     /old_locus_tag="BSU12220"
                     /EC_number="2.4.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 24893262, 27444326;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenols TDP-rhamnosyltransferase,
                     promiscuous"
                     /protein_id="NP_389104.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12220"
                     /db_xref="EnsemblGenomes-Tr:CAB13079"
                     /db_xref="GOA:O34539"
                     /db_xref="InterPro:IPR002213"
                     /db_xref="InterPro:IPR006326"
                     /db_xref="InterPro:IPR007235"
                     /db_xref="SubtiList:BG13196"
                     /db_xref="UniProtKB/Swiss-Prot:O34539"
                     /translation="MKKYHISMINIPAYGHVNPTLALVEKLCEKGHRVTYATTEEFAP
                     AVQQAGGEALIYHTSLNIDPKQIREMMEKNDAPLSLLKESLSILPQLEELYKDDQPDL
                     IIYDFVALAGKLFAEKLNVPVIKLCSSYAQNESFQLGNEDMLKKIREAEAEFKAYLEQ
                     EKLPAVSFEQLAVPEALNIVFMPKSFQIQHETFDDRFCFVGPSLGERKEKESLLIDKD
                     DRPLMLISLGTAFNAWPEFYKMCIKAFRDSSWQVIMSVGKTIDPESLEDIPANFTIRQ
                     SVPQLEVLEKADLFISHGGMNSTMEAMNAGVPLVVIPQMYEQELTANRVDELGLGVYL
                     PKEEVTVSSLQEAVQAVSSDQELLSRVKNMQKDVKEAGGAERAAAEIEAFMKKSAVPQ
                     *"
     gene            1274525..1275703
                     /gene="ppuG"
                     /locus_tag="BSU_12220"
                     /old_locus_tag="BSU12220"
     CDS             complement(1275744..1275932)
                     /gene="yjzI"
                     /locus_tag="BSU_12229"
                     /old_locus_tag="BSU12229"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences"
                     /codon_start=1
                     /transl_table=11
                     /product="putative phage protein"
                     /protein_id="YP_003097710.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12229"
                     /db_xref="EnsemblGenomes-Tr:CAX52600"
                     /db_xref="UniProtKB/Swiss-Prot:C0H3Z3"
                     /translation="METKKEEYETKGYDTSIVYEFNEYPDARSGRCDNCDYTLFKSSV
                     KGGKFLRECRRCGMKKNI*"
     gene            complement(1275744..1275932)
                     /gene="yjzI"
                     /locus_tag="BSU_12229"
                     /old_locus_tag="BSU12229"
     downshifts      complement(1275760)
                     /Source="Nicolas_upshifts"
                     /id="D680"
                     /incds=0
                     /nref=94
                     /ntot=231
                     /MaxReadThrough="-0.1433"
                     /MaxDrop="5.1712"
                     /score="13.0160925"
                     /energy="-9.5"
                     /TU="NA"
                     /idTUdmin="U1001"
                     /TUdmin=3
                     /isTUend="TRUE"
     promotor_-10    complement(1275958..1275977)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1001"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.34965034965035"
                     /psig="0.993006993006993"
                     /xcortree=2410
                     /SigmaFactorBS="agataaacccaacctcctaaaatcCATTGAAtacgccggaag
                     ctTGCTGTAAGATAAACAGCAGacacgtcttgtaacggaggatcgacatggaaaccaa
                     a"
                     /listShort="yjzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1275961)
                     /Source="Nicolas_upshifts"
                     /id="U1001"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.34965034965035"
                     /psig="0.993006993006993"
                     /xcortree=2410
                     /SigmaFactorBS="agataaacccaacctcctaaaatcCATTGAAtacgccggaag
                     ctTGCTGTAAGATAAACAGCAGacacgtcttgtaacggaggatcgacatggaaaccaa
                     a"
                     /listShort="yjzI"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1275991..1275997)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1001"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.34965034965035"
                     /psig="0.993006993006993"
                     /xcortree=2410
                     /SigmaFactorBS="agataaacccaacctcctaaaatcCATTGAAtacgccggaag
                     ctTGCTGTAAGATAAACAGCAGacacgtcttgtaacggaggatcgacatggaaaccaa
                     a"
                     /listShort="yjzI"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1276019..1276026
                     /Source="Nicolas_upshift_promotors"
                     /id="U1002"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.982017982017982"
                     /xcortree=2379
                     /SigmaFactorBS="tcaatggattttaggaggttgggtttaTCTTGATTtctccct
                     tggtttgCGCCAAAATAGCTTTATTAAgcttatatacataaaaagcctatgcaaagag
                     g"
                     /listShort="yjjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1276041..1276060
                     /Source="Nicolas_upshift_promotors"
                     /id="U1002"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.982017982017982"
                     /xcortree=2379
                     /SigmaFactorBS="tcaatggattttaggaggttgggtttaTCTTGATTtctccct
                     tggtttgCGCCAAAATAGCTTTATTAAgcttatatacataaaaagcctatgcaaagag
                     g"
                     /listShort="yjjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1276052
                     /Source="Nicolas_upshifts"
                     /id="U1002"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.356643356643357"
                     /psig="0.982017982017982"
                     /xcortree=2379
                     /SigmaFactorBS="tcaatggattttaggaggttgggtttaTCTTGATTtctccct
                     tggtttgCGCCAAAATAGCTTTATTAAgcttatatacataaaaagcctatgcaaagag
                     g"
                     /listShort="yjjA"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1276067..1276086)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1003"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=1376
                     /SigmaFactorBS="cgttttccaagtaacccttttccCATACCCGtttcctctcct
                     cttTGCATAGGCTTTTTATGTATataagcttaataaagctattttggcgcaaaccaag
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1276071)
                     /Source="Nicolas_upshifts"
                     /id="U1003"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=1376
                     /SigmaFactorBS="cgttttccaagtaacccttttccCATACCCGtttcctctcct
                     cttTGCATAGGCTTTTTATGTATataagcttaataaagctattttggcgcaaaccaag
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1276101..1276108)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1003"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.868131868131868"
                     /psig="0.868131868131868"
                     /xcortree=1376
                     /SigmaFactorBS="cgttttccaagtaacccttttccCATACCCGtttcctctcct
                     cttTGCATAGGCTTTTTATGTATataagcttaataaagctattttggcgcaaaccaag
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1276106..1276918
                     /gene="yjjA"
                     /locus_tag="BSU_12230"
                     /old_locus_tag="BSU12230"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative enzyme"
                     /protein_id="NP_389105.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12230"
                     /db_xref="EnsemblGenomes-Tr:CAB13080"
                     /db_xref="GOA:O34394"
                     /db_xref="InterPro:IPR003754"
                     /db_xref="InterPro:IPR036108"
                     /db_xref="SubtiList:BG13197"
                     /db_xref="UniProtKB/Swiss-Prot:O34394"
                     /translation="MGKGLLGKRVAIGGSRKTEEISTIIEKQGGIPVIRPLQGTVYLA
                     EKQVEPDLRTFAEEKADWVIFTTGIGLETLVDMAEKIGLKDEFLQAIRQAKAACRGYK
                     TLSALKKLGITPEASDEDGTTRGLIRSLEPHDFSGKTVMVQLHGEKAPALMAFLEEKG
                     ASVLPILPYQHIPPEEETVERLCRELMNDEVDAVCFTTAIQVRSLFDFAKGRGYINEV
                     KKVFEERAIAAAVGKVTAEALREEGITRLLAPEIERMGAMIVELAKYYEEKE*"
     gene            1276106..1276918
                     /gene="yjjA"
                     /locus_tag="BSU_12230"
                     /old_locus_tag="BSU12230"
     downshifts      1276897
                     /Source="Nicolas_upshifts"
                     /id="D681"
                     /incds=0
                     /nref=196
                     /ntot=254
                     /MaxReadThrough="3.61369"
                     /MaxDrop="5.73094"
                     /score="10.6328997"
                     /energy="-14.5"
                     /TU="U1002"
                     /idTUdmin="U1002"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     CDS             complement(1276964..1277716)
                     /gene="yjkA"
                     /locus_tag="BSU_12240"
                     /old_locus_tag="BSU12240"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (permease)"
                     /protein_id="NP_389106.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12240"
                     /db_xref="EnsemblGenomes-Tr:CAB13081"
                     /db_xref="GOA:O34684"
                     /db_xref="InterPro:IPR005226"
                     /db_xref="SubtiList:BG13198"
                     /db_xref="UniProtKB/Swiss-Prot:O34684"
                     /translation="MDYLSLSLTMIFVLIALFLSKSFKAGVEKDMIIATIRAAVQLLI
                     IGYVLSLIFRGDHPVFILLMVLLMLAVAAQNVIKRKKNTIGSFWRVFAALAIVEIVTQ
                     GILLSLHIIPLTARYVIPISGMVIGNSMVLSSLFLNRLNSEVGVRKEEIQLILSLGGT
                     PKQSIQRILTSAMKMSMIPTLESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVF
                     TTMASAALTCVILSVLTYPSLFTVHQQLKQNE*"
     gene            complement(1276964..1277716)
                     /gene="yjkA"
                     /locus_tag="BSU_12240"
                     /old_locus_tag="BSU12240"
     downshifts      complement(1276973)
                     /Source="Nicolas_upshifts"
                     /id="D682"
                     /incds=0
                     /nref=5
                     /ntot=153
                     /MaxReadThrough="0.924970000000001"
                     /MaxDrop="3.5673"
                     /score="13.1058081"
                     /energy="-12.8"
                     /TU="NA"
                     /idTUdmin="U1001"
                     /TUdmin="-1210"
                     /isTUend="FALSE"
     CDS             complement(1277716..1278468)
                     /gene="yjkB"
                     /locus_tag="BSU_12250"
                     /old_locus_tag="BSU12250"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ABC transporter (ATP-binding protein)"
                     /protein_id="NP_389107.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12250"
                     /db_xref="EnsemblGenomes-Tr:CAB13082"
                     /db_xref="GOA:O34756"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR005670"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13199"
                     /db_xref="UniProtKB/Swiss-Prot:O34756"
                     /translation="MEANDQTQNIPAISFRSVRKSYKQDGQTYDVLQDVTGDIQQGAI
                     VAVLGPSGSGKSTLLSMCNLMRTPDSGEVNIYGKEVREWNVNELRRTAALAFQSAPVL
                     DGTVRDNLSLVQRLHQSQLYSPEKLASLAGLPPELLDRSARDLSGGQRQRLSLARTLS
                     NPSSILLLDEITSALDPVSALEIEELIKRQHQEKKWTVMWVTHNMEQAKRIADTIWFM
                     ADGRLLEIAETDTFFSAPQHEAAKEFLKGGTR*"
     gene            complement(1277716..1278468)
                     /gene="yjkB"
                     /locus_tag="BSU_12250"
                     /old_locus_tag="BSU12250"
     CDS             complement(1278588..1279562)
                     /gene="yjlA"
                     /locus_tag="BSU_12260"
                     /old_locus_tag="BSU12260"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 14627822, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_389108.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12260"
                     /db_xref="EnsemblGenomes-Tr:CAB13083"
                     /db_xref="GOA:O34428"
                     /db_xref="InterPro:IPR032713"
                     /db_xref="SubtiList:BG13200"
                     /db_xref="UniProtKB/Swiss-Prot:O34428"
                     /translation="MKAIVIGILASLFFAVTFILNRAMELSGGSWLWSSSLRFIFMVP
                     FLCLIVIMRGTFTPLLLEMRKKPFYWIKWSFVGFVLFYAPITFAAAYGPGWLIAGTWQ
                     ITIVAGVLLSPLFYVKQDMPGGPQLIRQKIPLVSLGTSVIILIGAALIQLQHAESLSG
                     RMLLFSVLPVVIAAFAYPLGNRRMLEEYGGRLDTFQRVLGMTLASLPFWLILAAYGWW
                     SDGLPTASQTVQSFIVAVSSGIIATVLFFWATDMVRDNPQKLAAVEATQSGEVIFALL
                     GEIVLLSGVFPSLLSFAGLFIIIAGMMLHTFASQPRKPKKKAQSNLTA*"
     gene            complement(1278588..1279562)
                     /gene="yjlA"
                     /locus_tag="BSU_12260"
                     /old_locus_tag="BSU12260"
     downshifts      complement(1278623)
                     /Source="Nicolas_upshifts"
                     /id="D683"
                     /incds=0
                     /nref=1
                     /ntot=95
                     /MaxReadThrough="1.84381"
                     /MaxDrop="2.54799"
                     /score="4.80318278"
                     /energy="-14.5"
                     /TU="NA"
                     /idTUdmin="U1004"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(1279583..1279602)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1004"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.451548451548452"
                     /psig="0.997002997002997"
                     /xcortree=2386
                     /SigmaFactorBS="tccacatatagcggttcgccaaacatgatgtttttctcatga
                     ttcCATTGATCtgcatgataccgaaTAGTATAGTATAAAAAAATAatgccagaatgag
                     g"
                     /listShort="yjlA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1279609)
                     /Source="Nicolas_upshifts"
                     /id="U1004"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.451548451548452"
                     /psig="0.997002997002997"
                     /xcortree=2386
                     /SigmaFactorBS="tccacatatagcggttcgccaaacatgatgtttttctcatga
                     ttcCATTGATCtgcatgataccgaaTAGTATAGTATAAAAAAATAatgccagaatgag
                     g"
                     /listShort="yjlA"
                     /GFF_Attribute="listLong"
     S_feature       complement(1279611..1282117)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1297643_1300149_c"
                     /HighExp="Lbstat, S2, M0t90, nit, BT, M40t90, ferm, BC,
                     C30, Gly"
                     /AntisenseName="ndh"
                     /AntisenseCor="-0.74506751931257098"
                     /AntisenseRegPval="-48.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S449"
     promotor_-35    complement(1279617..1279624)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1004"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.451548451548452"
                     /psig="0.997002997002997"
                     /xcortree=2386
                     /SigmaFactorBS="tccacatatagcggttcgccaaacatgatgtttttctcatga
                     ttcCATTGATCtgcatgataccgaaTAGTATAGTATAAAAAAATAatgccagaatgag
                     g"
                     /listShort="yjlA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1279645..1279651
                     /Source="Nicolas_upshift_promotors"
                     /id="U1005"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=269
                     /SigmaFactorBS="atcatgcagatcaatggaatcatgagaaaaacatcaTGTTTG
                     GcgaaccgctatatgTGGAAGACAAAAAAGGGAGgtgaaattgatggaaagagagaca
                     c"
                     /listShort="yjlB, S450, S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1279666..1279684
                     /Source="Nicolas_upshift_promotors"
                     /id="U1005"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=269
                     /SigmaFactorBS="atcatgcagatcaatggaatcatgagaaaaacatcaTGTTTG
                     GcgaaccgctatatgTGGAAGACAAAAAAGGGAGgtgaaattgatggaaagagagaca
                     c"
                     /listShort="yjlB, S450, S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1279669
                     /Source="Nicolas_upshifts"
                     /id="U1005"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=269
                     /SigmaFactorBS="atcatgcagatcaatggaatcatgagaaaaacatcaTGTTTG
                     GcgaaccgctatatgTGGAAGACAAAAAAGGGAGgtgaaattgatggaaagagagaca
                     c"
                     /listShort="yjlB, S450, S451, rex, ndh"
                     /GFF_Attribute="listLong"
     CDS             1279694..1280191
                     /gene="yjlB"
                     /locus_tag="BSU_12270"
                     /old_locus_tag="BSU12270"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 10704478"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein; cupin family"
                     /protein_id="NP_389109.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12270"
                     /db_xref="EnsemblGenomes-Tr:CAB13084"
                     /db_xref="GOA:O34612"
                     /db_xref="InterPro:IPR006045"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR014500"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="SubtiList:BG13201"
                     /db_xref="UniProtKB/Swiss-Prot:O34612"
                     /translation="MERETQTYFFPDDGRIPNHPDFPLVVYQNALKDTGLAERIVTRH
                     GWSNSWSGSVFPYHHYHSNTHEVLIALRREAVIQFGGEKGAAIPFKSGDAVVIPAGVG
                     HKKLSSSPDFTVLGAYPGGVQYDMKTGKPNEREEAVKQIKQAALPANDPITGKREPLL
                     EIWVK*"
     gene            1279694..1280191
                     /gene="yjlB"
                     /locus_tag="BSU_12270"
                     /old_locus_tag="BSU12270"
     S_feature       1280192..1280305
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1298224_1298337"
                     /HighExp="Etha, M9-stat, B60, Salt, Gly, LPhT, Heat, Sw,
                     HiTm, B36"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S450"
     promotor_-35    1280285..1280289
                     /Source="Nicolas_upshift_promotors"
                     /id="U1006"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.618381618381618"
                     /psig=1
                     /xcortree=2641
                     /SigmaFactorBS="agctccatataaattaatttcataatcgaagcaattcaCGTT
                     CaaattttgttcaaaaAGTGTTATCATATAGAAGGTaatcgaattggagttttttgtg
                     t"
                     /listShort="S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1280305..1280324
                     /Source="Nicolas_upshift_promotors"
                     /id="U1006"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.618381618381618"
                     /psig=1
                     /xcortree=2641
                     /SigmaFactorBS="agctccatataaattaatttcataatcgaagcaattcaCGTT
                     CaaattttgttcaaaaAGTGTTATCATATAGAAGGTaatcgaattggagttttttgtg
                     t"
                     /listShort="S451, rex, ndh"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1280307..1280579
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1298339_1298611"
                     /HighExp="LBGtran, dia5, Lbexp, LBGexp, dia0, HPh, aero,
                     LPh, BMM, MG 25"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="1, 0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S451"
     upshifts        1280307
                     /Source="Nicolas_upshifts"
                     /id="U1006"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.618381618381618"
                     /psig=1
                     /xcortree=2641
                     /SigmaFactorBS="agctccatataaattaatttcataatcgaagcaattcaCGTT
                     CaaattttgttcaaaaAGTGTTATCATATAGAAGGTaatcgaattggagttttttgtg
                     t"
                     /listShort="S451, rex, ndh"
                     /GFF_Attribute="listLong"
     CDS             1280580..1281002
                     /gene="yjlC"
                     /locus_tag="BSU_12280"
                     /old_locus_tag="BSU12280"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 16513748, 17015645, 22720735"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389110.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12280"
                     /db_xref="EnsemblGenomes-Tr:CAB13085"
                     /db_xref="InterPro:IPR012440"
                     /db_xref="SubtiList:BG13202"
                     /db_xref="UniProtKB/Swiss-Prot:O34633"
                     /translation="MPETIDQTNASVSQSQQDLIDQLLKPEVQESLTVLVDQLPKLTE
                     LVNILTKSYDFAQSVATDEVLKSDTVGAITEILEPVKETAKEVAATAIEAKDRAEASN
                     ETIGLFGLLRMLKDPQAQKLFRFANSYLEVMNERENQK*"
     gene            1280580..1281002
                     /gene="yjlC"
                     /locus_tag="BSU_12280"
                     /old_locus_tag="BSU12280"
     CDS             1281042..1282220
                     /gene="ndh"
                     /locus_tag="BSU_12290"
                     /old_locus_tag="BSU12290"
                     /EC_number="1.6.99.-"
                     /function="16.10: Respire"
                     /experiment="publication(s) with functional evidences,
                     PMID:6816592, 16513748, 17015645, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 6816592, 16513748,
                     17015645, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase"
                     /protein_id="NP_389111.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12290"
                     /db_xref="EnsemblGenomes-Tr:CAB13086"
                     /db_xref="GOA:P80861"
                     /db_xref="InterPro:IPR023753"
                     /db_xref="InterPro:IPR036188"
                     /db_xref="SubtiList:BG13203"
                     /db_xref="UniProtKB/Swiss-Prot:P80861"
                     /translation="MSKHIVILGAGYGGVLSALTVRKHYTKEQARVTVVNKYPTHQII
                     TELHRLAAGNVSEKAVAMPLEKLFKGKDIDLKIAEVSSFSVDKKEVALADGSTLTYDA
                     LVVGLGSVTAYFGIPGLEENSMVLKSAADANKVFQHVEDRVREYSKTKNEADATILIG
                     GGGLTGVELVGELADIMPNLAKKYGVDHKEIKLKLVEAGPKILPVLPDDLIERATASL
                     EKRGVEFLTGLPVTNVEGNVIDLKDGSKVVANTFVWTGGVQGNPLVGESGLEVNRGRA
                     TVNDFLQSTSHEDVFVAGDSAVYFGPDGRPYPPTAQIAWQMGELIGYNLFAYLEGKTL
                     ETFKPVNSGTLASLGRKDAVAIIGANSTPLKGLPASLMKEASNVRYLTHIKGLFSLAY
                     *"
     gene            1281042..1282220
                     /gene="ndh"
                     /locus_tag="BSU_12290"
                     /old_locus_tag="BSU12290"
     promotor_no_box 1282051..1282151
                     /Source="Nicolas_upshift_promotors"
                     /id="U1007"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.59040959040959"
                     /psig="0.015984015984016"
                     /xcortree=1732
                     /SigmaFactorBS="tcaagccagtaaactctggtacacttgcaagccttggacgca
                     aagacgcggttgccatcattggtgctaattctacaccgcttaaaggtcttcctgcttc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     promotor_-10    complement(1282109..1282127)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1008"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=506
                     /SigmaFactorBS="cgtacattacttgcttctttcatcaaggaaGCAGGAAGAcct
                     ttaagcggTGTAGAATTAGCACCAATGatggcaaccgcgtctttgcgtccaaggcttg
                     c"
                     /listShort="S449, yjlA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1282111
                     /Source="Nicolas_upshifts"
                     /id="U1007"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.59040959040959"
                     /psig="0.015984015984016"
                     /xcortree=1732
                     /SigmaFactorBS="tcaagccagtaaactctggtacacttgcaagccttggacgca
                     aagacgcggttgccatcattggtgctaattctacaccgcttaaaggtcttcctgcttc
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     upshifts        complement(1282117)
                     /Source="Nicolas_upshifts"
                     /id="U1008"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=506
                     /SigmaFactorBS="cgtacattacttgcttctttcatcaaggaaGCAGGAAGAcct
                     ttaagcggTGTAGAATTAGCACCAATGatggcaaccgcgtctttgcgtccaaggcttg
                     c"
                     /listShort="S449, yjlA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1282139..1282147)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1008"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp=1
                     /psig=1
                     /xcortree=506
                     /SigmaFactorBS="cgtacattacttgcttctttcatcaaggaaGCAGGAAGAcct
                     ttaagcggTGTAGAATTAGCACCAATGatggcaaccgcgtctttgcgtccaaggcttg
                     c"
                     /listShort="S449, yjlA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1282219
                     /Source="Nicolas_upshifts"
                     /id="D684"
                     /incds=0
                     /nref=220
                     /ntot=278
                     /MaxReadThrough="2.01042"
                     /MaxDrop="8.69373"
                     /score="30.6421047"
                     /energy="-23.1"
                     /TU="NA"
                     /idTUdmin="U1005"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     promotor_-35    1282328..1282335
                     /Source="Nicolas_upshift_promotors"
                     /id="U1009"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.694305694305694"
                     /psig="0.935064935064935"
                     /xcortree=1573
                     /SigmaFactorBS="ttttcaaaaaagaGATTGATCccaaaggaatataaAGGTAAA
                     ATAAAAACAAATCaaaatgttaacgttaacattttgaaatagaatgaaagacggtgag
                     g"
                     /listShort="uxaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1282350..1282369
                     /Source="Nicolas_upshift_promotors"
                     /id="U1009"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.694305694305694"
                     /psig="0.935064935064935"
                     /xcortree=1573
                     /SigmaFactorBS="ttttcaaaaaagaGATTGATCccaaaggaatataaAGGTAAA
                     ATAAAAACAAATCaaaatgttaacgttaacattttgaaatagaatgaaagacggtgag
                     g"
                     /listShort="uxaC"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1282375
                     /Source="Nicolas_upshifts"
                     /id="U1009"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.694305694305694"
                     /psig="0.935064935064935"
                     /xcortree=1573
                     /SigmaFactorBS="ttttcaaaaaagaGATTGATCccaaaggaatataaAGGTAAA
                     ATAAAAACAAATCaaaatgttaacgttaacattttgaaatagaatgaaagacggtgag
                     g"
                     /listShort="uxaC"
                     /GFF_Attribute="listLong"
     CDS             1282418..1283839
                     /gene="uxaC"
                     /locus_tag="BSU_12300"
                     /old_locus_tag="BSU12300"
                     /EC_number="5.3.1.12"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579062, 9882655; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="galacturonate isomerase"
                     /protein_id="NP_389112.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12300"
                     /db_xref="EnsemblGenomes-Tr:CAB13087"
                     /db_xref="GOA:O34808"
                     /db_xref="InterPro:IPR003766"
                     /db_xref="InterPro:IPR032466"
                     /db_xref="SubtiList:BG13204"
                     /db_xref="UniProtKB/Swiss-Prot:O34808"
                     /translation="MEPFMGKNFLLKNETAVSLYHNYAKDMPIIDYHCHLSPKEIYEN
                     KTFQNITEAWLYGDHYKWRIMRANGIEETYITGDAPDEEKFMAWAKTVPMAIGNPLYN
                     WTHLELQRFFGIYEILNEKSGSAIWKQTNKLLKGEGFGARDLIVKSNVKVVCTTDDPV
                     DSLEYHLLLKEDKDFPVSVLPGFRPDKGLEINREGFPEWVQALEDAAAISITTYDEFL
                     KALEKRVRFFHSAGGRVSDHAIDTMVFAETTKEEAGRIFSDRLQGTEVSCEDEKKFKT
                     YTLQFLCGLYAELDWAMQFHINALRNTNTKMMKRLGPDTGYDSMNDEEIAKPLYKLLN
                     SVEMKNQLPKTILYSLNPNDNYVIASMINSFQDGITPGKIQFGTAWWFNDTKDGMLDQ
                     MKALSNVGLFSRFIGMLTDSRSFLSYTRHEYFRRIVCNLIGEWVENGEVPRDMELLGS
                     IVQGICYDNAKHYFQFQEEKANV*"
     gene            1282418..1283839
                     /gene="uxaC"
                     /locus_tag="BSU_12300"
                     /old_locus_tag="BSU12300"
     CDS             1283907..1285286
                     /gene="exuM"
                     /locus_tag="BSU_12310"
                     /old_locus_tag="BSU12310"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9882655, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Na+:altronate/mannonate symporter"
                     /protein_id="NP_389113.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12310"
                     /db_xref="EnsemblGenomes-Tr:CAB13088"
                     /db_xref="GOA:O34961"
                     /db_xref="InterPro:IPR001927"
                     /db_xref="InterPro:IPR018043"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13205"
                     /db_xref="UniProtKB/Swiss-Prot:O34961"
                     /translation="MRTELANKVVSVETEKRLSLKEKMSYGFGDFGNGFMFDLGQIYL
                     LKYFTDVAGIPAAMAGGIFLVSKLFAAITDPIVGSSIDYRKNIGKRGKFRPYLLIGSI
                     VLAVLTVLIFLSPNVSTTGKLIYAYASYMIWGIGYSFVNIPYGSLGAAMTQNSEDRTS
                     ISTFRQIGSLGALFITSVAVMPLLVKFDNPKVGYPVVMGLFAALGVFWFYICYRNCKE
                     RIIISEAPKEKLTLSSVVKTFITNKPLLTLVLMTIFSISAYNIKSAMLVYFAQYNLGN
                     VELMAYMNFIIIGSSFLGVVFLPKLVKMFGKKRTAMIGFGISVAADLINFMLPSNVYV
                     FTILASIAFIGISIPNGITWALVSDIIDYGEWKSGERKEATTYSLFNFSRKLAQSLSG
                     FLSGIGLGIIGYVPNAVQTAQALIGIKALLLLYPAIALALAMFIIGFLYKLTDQQHAQ
                     IVQDLHQKS*"
     gene            1283907..1285286
                     /gene="exuM"
                     /locus_tag="BSU_12310"
                     /old_locus_tag="BSU12310"
     promotor_-10    complement(1284426..1284445)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1010"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2077
                     /SigmaFactorBS="cgggtagccgaccttcggattatcaAACTTGACgagcagcgg
                     catcACGGCCACACTTGTGATAAAcaaggcgccaagtgatccgatttggcggaacgtc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1284431)
                     /Source="Nicolas_upshifts"
                     /id="U1010"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2077
                     /SigmaFactorBS="cgggtagccgaccttcggattatcaAACTTGACgagcagcgg
                     catcACGGCCACACTTGTGATAAAcaaggcgccaagtgatccgatttggcggaacgtc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1284459..1284466)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1010"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig="0.999000999001"
                     /xcortree=2077
                     /SigmaFactorBS="cgggtagccgaccttcggattatcaAACTTGACgagcagcgg
                     catcACGGCCACACTTGTGATAAAcaaggcgccaagtgatccgatttggcggaacgtc
                     g"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1285311
                     /Source="Nicolas_upshifts"
                     /id="U1011"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.926073926073926"
                     /psig="0.926073926073926"
                     /xcortree=1048
                     /SigmaFactorBS="gctcagatcgttcaggatcttcatcaaaagagctgacaatat
                     aatataaagaatatttaaaataatttgtAAATAAAAtgtgtttgtaggggtttcgctt
                     g"
                     /listShort="S452, yjmC, yjmD, uxuA, uxuB, exuT, exuR"
                     /GFF_Attribute="listLong"
     misc_feature    1285321..1285328
                     /Source="Nicolas_upshift_promotors"
                     /id="U1011"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.926073926073926"
                     /psig="0.926073926073926"
                     /xcortree=1048
                     /SigmaFactorBS="gctcagatcgttcaggatcttcatcaaaagagctgacaatat
                     aatataaagaatatttaaaataatttgtAAATAAAAtgtgtttgtaggggtttcgctt
                     g"
                     /listShort="S452, yjmC, yjmD, uxuA, uxuB, exuT, exuR"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     S_feature       1285323..1285390
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1303355_1303422"
                     /HighExp="S4, S5, S6, S3, S8, S7, T5.0H, T4.0H, T3.30H,
                     M9-stat"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.926"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S452"
     CDS             1285391..1286404
                     /gene="yjmC"
                     /locus_tag="BSU_12320"
                     /old_locus_tag="BSU12320"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9579062, 9882655,
                     16788182; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_389114.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12320"
                     /db_xref="EnsemblGenomes-Tr:CAB13089"
                     /db_xref="GOA:O34736"
                     /db_xref="InterPro:IPR003767"
                     /db_xref="InterPro:IPR036111"
                     /db_xref="SubtiList:BG13206"
                     /db_xref="UniProtKB/Swiss-Prot:O34736"
                     /translation="MKTITIAAEEAKELVWQKLDGAGLNERDAEKVADVLVHADLRNV
                     HSHGVLHTEHYVNRLLAGGINPGAQPVFKETGPVTGVLDGDDGFGHVNCDMAMDHAID
                     MAKKKGVGMVTAVNSSHCGALSYFVQKAADEKLIGMAMTHTDSIVVPFGGRTPILGTN
                     PIAYGVPAKHKKPFILDMATSKVAFGKILQAREEGKEIPEGWGVDENGEAVTDPDKVV
                     SLSTFGGPKGYGLSIVVDVFSGLLAGAAFGPHIAKMYNGLDQKRKLGHYVCAINPSFF
                     TDWDTFLEQMDAMIDELQQSPPAVGFERVYVPGEIEQLHEERNKKNGISIARSVYEFL
                     KSR*"
     gene            1285391..1286404
                     /gene="yjmC"
                     /locus_tag="BSU_12320"
                     /old_locus_tag="BSU12320"
     CDS             1286410..1287429
                     /gene="yjmD"
                     /locus_tag="BSU_12330"
                     /old_locus_tag="BSU12330"
                     /EC_number="1.1.1.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9579062, 9882655;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase"
                     /protein_id="NP_389115.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12330"
                     /db_xref="EnsemblGenomes-Tr:CAB13090"
                     /db_xref="GOA:O35045"
                     /db_xref="InterPro:IPR002328"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR013154"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13207"
                     /db_xref="UniProtKB/Swiss-Prot:O35045"
                     /translation="MKAVQVRKAYDLVTAEVKKPVLSKDDEVLVKVKRVGICGSDMHI
                     YHGTNPLATLPRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGRPN
                     VCAKLSVFGVHEDGGMREYIVLPERQLHAVSKDLPWEEAVMAEPYTIGAQAVWRGQVE
                     KGDTVLIQGAGPIGICVLKMAKLAGAAVMMTDLNNERLAFAKENGADAVVNVQAEHVA
                     ERVLEWTGNEGANVVIDAVCLPETFALSIEAVSPAGHVVVLGFDERAAQISQLPITKK
                     EVTITGSRLQTNQFPKVVELLNGGRLMHNGLVTHTFSVDDVHHAFQFIKEHPDQVRKA
                     VITFD*"
     gene            1286410..1287429
                     /gene="yjmD"
                     /locus_tag="BSU_12330"
                     /old_locus_tag="BSU12330"
     CDS             1287454..1288533
                     /gene="uxuA"
                     /locus_tag="BSU_12340"
                     /old_locus_tag="BSU12340"
                     /EC_number="4.2.1.8"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 9579062, 9882655,
                     10368143, 25145794; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-mannonate dehydratase"
                     /protein_id="NP_389116.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12340"
                     /db_xref="EnsemblGenomes-Tr:CAB13091"
                     /db_xref="GOA:O34346"
                     /db_xref="InterPro:IPR004628"
                     /db_xref="InterPro:IPR036237"
                     /db_xref="SubtiList:BG13208"
                     /db_xref="UniProtKB/Swiss-Prot:O34346"
                     /translation="MNMTFRWYGRGNDTVTLEYVKQIPGVKGIVWALHQKPVGDVWEK
                     EEIRAETEYIQSYGFHAEVVESVNVHEAIKLGNEERGRYIENYKQTIRNLAGFGVKVI
                     CYNFMPVFDWTRTDMFRPLEDGSTALFFEKAKVESLDPQELIRTVEEASDMTLPGWEP
                     EKLARIKELFAAYRTVDEEKLWDNLSFFLQEILPVAEAYGVQMAIHPDDPPWPIFGLP
                     RIITGEASYKKLRAISDSPSNCITLCTGSMGANPANDMVEIAKTYAGIAPFSHIRNVK
                     IYENGDFIETSHLTKDGSINIQGVMEELHKQDYEGYVRPDHGRHLWGEQCRPGYGLYD
                     RALGIMYLNGLWDAYEAMAKKEVGI*"
     gene            1287454..1288533
                     /gene="uxuA"
                     /locus_tag="BSU_12340"
                     /old_locus_tag="BSU12340"
     CDS             1288530..1289366
                     /gene="uxuB"
                     /locus_tag="BSU_12350"
                     /old_locus_tag="BSU12350"
                     /EC_number="1.1.1.57"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579062, 9882655, 10368143;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="fructuronate reductase"
                     /protein_id="NP_389117.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12350"
                     /db_xref="EnsemblGenomes-Tr:CAB13092"
                     /db_xref="GOA:O34896"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR020904"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13209"
                     /db_xref="UniProtKB/Swiss-Prot:O34896"
                     /translation="MIPLHENLAGKTAVITGGSGVLCSAMARELARHGMKVAILNRTA
                     EKGQAVVKEITAAGGTACAVAADVLDRMSLERAKEDILGQFGAVDLLINGAGGNHPDA
                     ITDVETYEEAGEGQSFFDMDERGFLTVFSTNFTGAFLASQVFGKELLKADSPAIINLS
                     SMSAYSPMTKVPAYSAAKASINNFTMWMAVHFAETGLRVNAIAPGFFLTKQNHDLLIN
                     QDGTFTSRSHKIIAGTPMKRFGKPEDLLGTLLWLADESYSGFVTGITVPVDGGFMAYS
                     GV*"
     gene            1288530..1289366
                     /gene="uxuB"
                     /locus_tag="BSU_12350"
                     /old_locus_tag="BSU12350"
     CDS             1289414..1290682
                     /gene="exuT"
                     /locus_tag="BSU_12360"
                     /old_locus_tag="BSU12360"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8320243, 9579062, 9882655,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="hexuronate transporter"
                     /protein_id="NP_389118.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12360"
                     /db_xref="EnsemblGenomes-Tr:CAB13093"
                     /db_xref="GOA:O34456"
                     /db_xref="InterPro:IPR000849"
                     /db_xref="InterPro:IPR004744"
                     /db_xref="InterPro:IPR011701"
                     /db_xref="InterPro:IPR020846"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13210"
                     /db_xref="UniProtKB/Swiss-Prot:O34456"
                     /translation="MFSKDKLPVILFLFLAGVINYLDRSALSIAAPFIQDDLTLSATQ
                     MGLIFSSFSIGYAIFNFLGGVASDRYGAKLTLFVAMVVWSLFSGAVALAFGFVSLLII
                     RILFGMGEGPLSATINKMVNNWFPPTQRASVIGVTNSGTPLGGAISGPIVGMIAVAFS
                     WKVSFVLIMIIGLIWAVLWFKFVKEKPQETIKEAPAIKAETSPGEKIPLTFYLKQKTV
                     LFTAFAFFAYNYILFFFLTWFPSYLVDERGLSVESMSVITVIPWILGFIGLAAGGFVS
                     DYVYKKTARKGVLFSRKVVLVTCLFSSAVLIGFAGLVATTAGAVTLVALSVFFLYLTG
                     AIYWAVIQDVVDQNNVGSVGGFMHFLANTAGIIGPALTGFIVDQTGTFSGAFLLAGGL
                     AVFASLAVIRFVRPIIGKPAGTEAENPVSY*"
     gene            1289414..1290682
                     /gene="exuT"
                     /locus_tag="BSU_12360"
                     /old_locus_tag="BSU12360"
     promotor_-35    1290626..1290629
                     /Source="Nicolas_upshift_promotors"
                     /id="U1012"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.637362637362637"
                     /psig="0.005994005994006"
                     /xcortree=1486
                     /SigmaFactorBS="ctggctgtcttcgcttcacttgctgtgattcgttttgtcCGT
                     CcaatcattggtaagcCAGCGggaacagaagctgagaatcctgtgtcttattaatctg
                     g"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1290645..1290649
                     /Source="Nicolas_upshift_promotors"
                     /id="U1012"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.637362637362637"
                     /psig="0.005994005994006"
                     /xcortree=1486
                     /SigmaFactorBS="ctggctgtcttcgcttcacttgctgtgattcgttttgtcCGT
                     CcaatcattggtaagcCAGCGggaacagaagctgagaatcctgtgtcttattaatctg
                     g"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1290647
                     /Source="Nicolas_upshifts"
                     /id="U1012"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.637362637362637"
                     /psig="0.005994005994006"
                     /xcortree=1486
                     /SigmaFactorBS="ctggctgtcttcgcttcacttgctgtgattcgttttgtcCGT
                     CcaatcattggtaagcCAGCGggaacagaagctgagaatcctgtgtcttattaatctg
                     g"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
     misc_feature    1290715..1290734
                     /Source="Nicolas_upshift_promotors"
                     /id="U1013"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig=1
                     /xcortree=3107
                     /SigmaFactorBS="agaagctgagaatcctgtgtcttattaatctggaaatatagt
                     gggagaggcggtatgtttGATGATACAATATACAGTAAataatcgcagccggtatgat
                     a"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        1290715
                     /Source="Nicolas_upshifts"
                     /id="U1013"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.966033966033966"
                     /psig=1
                     /xcortree=3107
                     /SigmaFactorBS="agaagctgagaatcctgtgtcttattaatctggaaatatagt
                     gggagaggcggtatgtttGATGATACAATATACAGTAAataatcgcagccggtatgat
                     a"
                     /listShort="exuR"
                     /GFF_Attribute="listLong"
     CDS             1290770..1291771
                     /gene="exuR"
                     /locus_tag="BSU_12370"
                     /old_locus_tag="BSU12370"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:9579062, 9882655"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9579062, 9882655; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (LacI family)"
                     /protein_id="NP_389119.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12370"
                     /db_xref="EnsemblGenomes-Tr:CAB13094"
                     /db_xref="GOA:Q9JMQ1"
                     /db_xref="InterPro:IPR000843"
                     /db_xref="InterPro:IPR010982"
                     /db_xref="InterPro:IPR028082"
                     /db_xref="SubtiList:BG13211"
                     /db_xref="UniProtKB/Swiss-Prot:Q9JMQ1"
                     /translation="MVTIKDIAKLANVSHTTVSRALNNSPYIKEHTKKKILELAEQLN
                     YTPNVNAKSLAMQKSHTIGLFFTSITNGTSHSFFADTIKGVNQAISEDYNLYVRGIDD
                     LKNYDSVTPMRYDGIILMSQSDIDNSFIYHIREKNIPLVVLNRDIDDRTITNILSNDK
                     EGSQEAVEYFIQSGHQDIAIIEGIEGFKSSQQRKEGYLSALIQHHIPIKHEYSVKGQY
                     DMESGFQAMERLLALPNPPTAVFCSNDDMAIGAMNAIFAKGLRVPDDISVIGFDDIGF
                     SQYITPRLSTVKRPVEKISVLGAQKLLSLISEPETKAEKILENTEFMVRDSVRRLTT*
                     "
     gene            1290770..1291771
                     /gene="exuR"
                     /locus_tag="BSU_12370"
                     /old_locus_tag="BSU12370"
     promotor_no_box complement(1291453..1291553)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1014"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.915084915084915"
                     /psig="0.024975024975025"
                     /xcortree=19
                     /SigmaFactorBS="cgcgcaggccctttgcgaatatcgcattcatcgctccgattg
                     ccatgtcatcattcgaacaaaaaacagcggttggaggattcggcagtgccagcagccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(1291493)
                     /Source="Nicolas_upshifts"
                     /id="U1014"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.915084915084915"
                     /psig="0.024975024975025"
                     /xcortree=19
                     /SigmaFactorBS="cgcgcaggccctttgcgaatatcgcattcatcgctccgattg
                     ccatgtcatcattcgaacaaaaaacagcggttggaggattcggcagtgccagcagccg
                     c"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      1291747
                     /Source="Nicolas_upshifts"
                     /id="D685"
                     /incds=0
                     /nref=2
                     /ntot=132
                     /MaxReadThrough="2.47166"
                     /MaxDrop="3.11543"
                     /score="12.2153519"
                     /energy="-7.4"
                     /TU="NA"
                     /idTUdmin="U1011"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             1291848..1293290
                     /gene="uxaB"
                     /locus_tag="BSU_12380"
                     /old_locus_tag="BSU12380"
                     /EC_number="1.1.1.58"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579062, 9882655; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate reductase (altronate
                     oxidoreductase)"
                     /protein_id="NP_389120.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12380"
                     /db_xref="EnsemblGenomes-Tr:CAB13095"
                     /db_xref="GOA:O34354"
                     /db_xref="InterPro:IPR000669"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR013118"
                     /db_xref="InterPro:IPR013131"
                     /db_xref="InterPro:IPR013328"
                     /db_xref="InterPro:IPR023668"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13212"
                     /db_xref="UniProtKB/Swiss-Prot:O34354"
                     /translation="MQKLNKNVYDHYTQYPEKILQFGEGNFLRGFIDWQIDQLNQHTD
                     FNGSVAVVQPRGSEKIKRLNEQDGLYTLFLQGMKDGEAVNEHMIINSISRGIDLFSDY
                     EAYKELASSERLRFIISNTTEAGIVCDEKDRLEDRPQKTFPGKLTAFLYFRYQAFKGD
                     QTKGCVLIPCELIENNGEKLRETVLHYAHLWKLEEGFTQWIHEANTFCNSLVDRIVPG
                     FPVDSIDEITADLGYQDDLIVVGEQYYLWVIEGPDWIGKELPFAAAGLHTKIVSDLTP
                     YRTKKVRILNGAHTAMTPVALLYGLKTVRDAVEHPEVGRFIRELIDDEILPVLKMEGL
                     SQYADDVLNRFKNPYIKHYLESIALNAISKFKTRNLPTLKEYAEQKGQLPERLVFSFS
                     ALLYFYHDNETLQDDPAVLQFFKEVWCQEDGDMLRIASRVLGEQRLWGADLNEIPKLT
                     DRVAVYLNHIHELGMQRALEQYCIQGGEVR*"
     gene            1291848..1293290
                     /gene="uxaB"
                     /locus_tag="BSU_12380"
                     /old_locus_tag="BSU12380"
     CDS             1293287..1294780
                     /gene="uxaA"
                     /locus_tag="BSU_12390"
                     /old_locus_tag="BSU12390"
                     /EC_number="4.2.1.7"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 9579062, 9882655; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase"
                     /protein_id="NP_389121.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12390"
                     /db_xref="EnsemblGenomes-Tr:CAB13096"
                     /db_xref="GOA:O34673"
                     /db_xref="InterPro:IPR007392"
                     /db_xref="InterPro:IPR013974"
                     /db_xref="SubtiList:BG13213"
                     /db_xref="UniProtKB/Swiss-Prot:O34673"
                     /translation="MKSFIKIHKQDNVLLALRDIQKGERLHAYGVSIEVKDDIKRGHK
                     IALQSIKENDSIVKYGFPIGHASQDISIGEHIHVHNTKTNLSDIQLYSYTPRFDENPY
                     SNENRTFKGFRRENGDAGVRNELWIVPTVGCVNGIAEKMLQRFVRETGDIAPFDNVLV
                     LKHQYGCSQLGDDHENTKQILLNAIRHPNAGGVLVLGLGCENNELARMKEALQDVNLK
                     RVKFLESQSVTDEMEAGVALLKEIHEAAKGDKREDIPLSELKIGLKCGGSDGFSGITA
                     NPLLGRFSDYLIAQGGSTVLTEVPEMFGAETILMQRAANEEVFHKIVDLINDFKQYFI
                     KHDQPVYENPSPGNKAGGISTLEDKSLGCTQKAGISPVTDVLKYGEVLKTKGLTLLSA
                     PGNDLIASSALAAAGCQIVLFTTGRGTPFGTFVPTVKVATNTELYEAKPHWIDFNAGL
                     LAEDDVHEEYVLREFIHYMIEVASGQLVNHEKNDFKELAIFKSGVTL*"
     gene            1293287..1294780
                     /gene="uxaA"
                     /locus_tag="BSU_12390"
                     /old_locus_tag="BSU12390"
     CDS             complement(1294819..1295583)
                     /gene="yjnA"
                     /locus_tag="BSU_12400"
                     /old_locus_tag="BSU12400"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     16885442; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative permease"
                     /protein_id="NP_389122.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12400"
                     /db_xref="EnsemblGenomes-Tr:CAB13097"
                     /db_xref="GOA:O34578"
                     /db_xref="InterPro:IPR002781"
                     /db_xref="SubtiList:BG13214"
                     /db_xref="UniProtKB/Swiss-Prot:O34578"
                     /translation="MSVSIILMGLFVGALVGLTGVGGAALLTPLLIVLGINPSIAVGT
                     DLVYNSITKLFGVASHWRQKTINFKLVKYLAIGSIPSASLAIGILHLFPAFHQHQEEI
                     IKHALGYVLTLVAISIIVRLFLDRKLRPNRWQLMPLENKRALTILIGVVFGFIVGLTS
                     IGSGSLFAIAMIYLFNMKASQIVGTDIAHAFLLVTAAGILNASFGSVDYMLAANLLLG
                     SIPGVLIGSHLSPRFSPRPLQFIMASIILVSGLKLI*"
     gene            complement(1294819..1295583)
                     /gene="yjnA"
                     /locus_tag="BSU_12400"
                     /old_locus_tag="BSU12400"
     downshifts      complement(1294838)
                     /Source="Nicolas_upshifts"
                     /id="D686"
                     /incds=0
                     /nref=96
                     /ntot=170
                     /MaxReadThrough="1.34004"
                     /MaxDrop="4.60564"
                     /score="6.47747687"
                     /energy="-11.3"
                     /TU="NA"
                     /idTUdmin="U1015"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     SCAR            join(1295610,1295617)
                     /created_by="User"
                     /modified_by="User"
                     /label="TF8A"
     N_region        1295611..1295616
                     /created_by="User"
                     /note_="EcoRI site (GAATTC)"
                     /modified_by="User"
                     /label="TF8A"
     CDS             <1295619..1295939
                     /gene="xlyA"
                     /locus_tag="Delta6_pseudo_BSU_12810"
                     /old_locus_tag="BSU12810"
                     /EC_number="3.5.1.28"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:7921239, 9555893"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7921239, 9555893; Product
                     type h: extrachromosomal origin"
                     /codon_start=1
                     /transl_table=11
                     /product="phage PBSX; N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="NP_389164.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12810"
                     /db_xref="EnsemblGenomes-Tr:CAB13138"
                     /db_xref="GOA:P39800"
                     /db_xref="InterPro:IPR002477"
                     /db_xref="InterPro:IPR002502"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036365"
                     /db_xref="InterPro:IPR036366"
                     /db_xref="InterPro:IPR036505"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="PDB:3HMB"
                     /db_xref="PDB:3RDR"
                     /db_xref="SubtiList:BG10962"
                     /db_xref="UniProtKB/Swiss-Prot:P39800"
                     /NCBI_locus_tag="A8O17_RS06625"
                     /modified_by="User"
                     /translation="PNLIRVGQVLIVSAPSAAEKPELYPLPDGIIQLTTPYTSGEHVF
                     QVQRALAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPATKEKIA
                     AQLS*"
                     /label="Delta6_pseudo_BSU_12810"
     gene            <1295619..1295939
                     /gene="xlyA"
                     /locus_tag="Delta6_pseudo_BSU_12810"
                     /old_locus_tag="BSU12810"
                     /NCBI_locus_tag="A8O17_RS06625"
                     /modified_by="User"
                     /label="Delta6_pseudo_BSU_12810"
     downshifts      1295948
                     /Source="Nicolas_upshifts"
                     /id="D696"
                     /incds=0
                     /nref=29
                     /ntot=162
                     /MaxReadThrough="3.77255"
                     /MaxDrop="5.00305"
                     /score="30.9009227"
                     /energy="-12.5"
                     /TU="U1029,U1033"
                     /idTUdmin="U1029"
                     /TUdmin="-152"
                     /isTUend="FALSE"
     S_feature       complement(1295957..1296160)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1348200_1348403_c"
                     /HighExp="S8, S6, S7, BT, B36, S5, S4, G/S, Pyr, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigEF"
                     /TUshortPSig="1, 0.798"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S458"
     CDS             complement(1295976..1296113)
                     /gene="spoIISC"
                     /locus_tag="BSU_12815"
                     /old_locus_tag="BSU12815"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 1c: Function from experimental evidences
                     in the studied genus; PubMedId: 11371520, 18096016,
                     20863891, 21147767, 25039482, 26300872, 27294956; Product
                     type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="three component toxin / antitoxin / antitoxin
                     SpoIISABC, antitoxin C"
                     /protein_id="YP_009513952.1"
                     /translation="MSGDTVKKLVRRVKFVDYGRFGLSGYSLRVRERSAGIIKKLKKK
                     K*"
     gene            complement(1295976..1296113)
                     /gene="spoIISC"
                     /locus_tag="BSU_12815"
                     /old_locus_tag="BSU12815"
     downshifts      complement(1296000)
                     /Source="Nicolas_upshifts"
                     /id="D697"
                     /incds=0
                     /nref=31
                     /ntot=215
                     /MaxReadThrough="2.75573"
                     /MaxDrop="4.3776"
                     /score="24.0186344"
                     /energy="-12.5"
                     /TU="U1034"
                     /idTUdmin="U1035"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1296199..1296369)
                     /gene="spoIISB"
                     /locus_tag="BSU_12820"
                     /old_locus_tag="BSU12820"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11371520, 18096016, 20863891, 21147767, 25039482,
                     26300872, 27294956"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11371520, 18096016,
                     20863891, 21147767, 25039482, 26300872, 27294956; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="three-component apoptotic control system
                     component B (antitoxin B)"
                     /protein_id="NP_389165.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12820"
                     /db_xref="EnsemblGenomes-Tr:CAB13139"
                     /db_xref="GOA:O34800"
                     /db_xref="InterPro:IPR025897"
                     /db_xref="PDB:3O6Q"
                     /db_xref="SubtiList:BG12678"
                     /db_xref="UniProtKB/Swiss-Prot:O34800"
                     /translation="MERAFQNRCEPRAAKPFKILKKRSTTSVASYQVSPHTARIFKEN
                     ERLIDEYKRKKA*"
     gene            complement(1296199..1296369)
                     /gene="spoIISB"
                     /locus_tag="BSU_12820"
                     /old_locus_tag="BSU12820"
     downshifts      complement(1296205)
                     /Source="Nicolas_upshifts"
                     /id="D698"
                     /incds=0
                     /nref=6
                     /ntot=86
                     /MaxReadThrough="4.69899"
                     /MaxDrop="3.0872"
                     /score="24.0186344"
                     /energy="-12.5"
                     /TU="U1034,U1035"
                     /idTUdmin="U1035"
                     /TUdmin="-205"
                     /isTUend="FALSE"
     CDS             complement(1296369..1297115)
                     /gene="spoIISA"
                     /locus_tag="BSU_12830"
                     /old_locus_tag="BSU12830"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11371520, 18096016, 20863891, 21147767, 25039482,
                     26300872, 27294956"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11371520, 18096016,
                     20863891, 21147767, 25039482, 26300872, 27294956; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="three-component apoptosis factor (ABC
                     toxin/antitoxin/antitoxin system)"
                     /protein_id="NP_389166.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12830"
                     /db_xref="EnsemblGenomes-Tr:CAB13140"
                     /db_xref="GOA:O34853"
                     /db_xref="InterPro:IPR025940"
                     /db_xref="PDB:3O6Q"
                     /db_xref="SubtiList:BG12677"
                     /db_xref="UniProtKB/Swiss-Prot:O34853"
                     /translation="MVLFFQIMVWCIVAGLGLYVYATWRFEAKVKEKMSAIRKTWYLL
                     FVLGAMVYWTYEPTSLFTHWERYLIVAVSFALIDAFIFLSAYVKKLAGSELETDTREI
                     LEENNEMLHMYLNRLKTYQYLLKNEPIHVYYGSIDAYAEGIDKLLKTYADKMNLTASL
                     CHYSTQADKDRLTEHMDDPADVQTRLDRKDVYYDQYGKVVLIPFTIETQNYVIKLTSD
                     SIVTEFDYLLFTSLTSIYDLVLPIEEEGEG*"
     gene            complement(1296369..1297115)
                     /gene="spoIISA"
                     /locus_tag="BSU_12830"
                     /old_locus_tag="BSU12830"
     promotor_-10    complement(1296950..1296969)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1034"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.724275724275724"
                     /psig=1
                     /xcortree=623
                     /SigmaFactorBS="tcaaagaaaaaatgtccgccattcggaaaacttggTATTTGC
                     TgtttgttctgggcgcTATGGTATACTGGACATATGagcccacttccctatttaccca
                     c"
                     /listShort="spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1296967)
                     /Source="Nicolas_upshifts"
                     /id="U1034"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.724275724275724"
                     /psig=1
                     /xcortree=623
                     /SigmaFactorBS="tcaaagaaaaaatgtccgccattcggaaaacttggTATTTGC
                     TgtttgttctgggcgcTATGGTATACTGGACATATGagcccacttccctatttaccca
                     c"
                     /listShort="spoIISB, S458"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1296985..1296992)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1034"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.724275724275724"
                     /psig=1
                     /xcortree=623
                     /SigmaFactorBS="tcaaagaaaaaatgtccgccattcggaaaacttggTATTTGC
                     TgtttgttctgggcgcTATGGTATACTGGACATATGagcccacttccctatttaccca
                     c"
                     /listShort="spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1297141..1297159)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1035"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.798201798201798"
                     /psig="0.798201798201798"
                     /xcortree=1112
                     /SigmaFactorBS="cttctgtcaaaggagcggtttttttgatggaacaGGAAAAcc
                     atccggatctctcGAATACAATAAGCAGAACCtatttcagatgtgagggattcgaata
                     t"
                     /listShort="spoIISA, spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1297154)
                     /Source="Nicolas_upshifts"
                     /id="U1035"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.798201798201798"
                     /psig="0.798201798201798"
                     /xcortree=1112
                     /SigmaFactorBS="cttctgtcaaaggagcggtttttttgatggaacaGGAAAAcc
                     atccggatctctcGAATACAATAAGCAGAACCtatttcagatgtgagggattcgaata
                     t"
                     /listShort="spoIISA, spoIISB, S458"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1297175..1297180)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1035"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.798201798201798"
                     /psig="0.798201798201798"
                     /xcortree=1112
                     /SigmaFactorBS="cttctgtcaaaggagcggtttttttgatggaacaGGAAAAcc
                     atccggatctctcGAATACAATAAGCAGAACCtatttcagatgtgagggattcgaata
                     t"
                     /listShort="spoIISA, spoIISB, S458"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1297225..1298226)
                     /gene="pitB"
                     /locus_tag="BSU_12840"
                     /old_locus_tag="BSU12840"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2b: Function from indirect experimental
                     evidences (e.g. phenotypes); PubMedId: 10784039, 15849754,
                     16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative low-affinity inorganic phosphate
                     transporter"
                     /protein_id="NP_389167.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12840"
                     /db_xref="EnsemblGenomes-Tr:CAB13141"
                     /db_xref="GOA:O34436"
                     /db_xref="InterPro:IPR001204"
                     /db_xref="SubtiList:BG13226"
                     /db_xref="UniProtKB/Swiss-Prot:O34436"
                     /translation="MDILLILTILIVICALAFDFINGFHDTANAIATSVSTKALKPRH
                     AIILAAVMNFVGAMTFTGVAKTITKDIVDPYTLENGSVVILAALLAAIAWNLITWYYG
                     IPSSSSHAIIGAIAGAAIAAAGFAALNYKGFIKIIEALILSPIIAFVLGFILYSIVKL
                     IFKDSNLAKTNKQFRRVQIVTAALQSYTHGTNDAQKAMGIITMALITANLHTSANDIP
                     TWVQFACATAMGLGTSIGGWKIIKTVGGKIMKIRPVNGVSADLTGAAIIFGATFIHLP
                     VSTTHVISSSILGVGASHRVKGVNWGTAKRMLITWVITLPISATLGAIAYFILNMIF*
                     "
     gene            complement(1297225..1298226)
                     /gene="pitB"
                     /locus_tag="BSU_12840"
                     /old_locus_tag="BSU12840"
     downshifts      complement(1297254)
                     /Source="Nicolas_upshifts"
                     /id="D699"
                     /incds=0
                     /nref=205
                     /ntot=253
                     /MaxReadThrough="3.49591"
                     /MaxDrop="5.81942"
                     /score="21.8061263"
                     /energy="-11"
                     /TU="U1036,U1038"
                     /idTUdmin="U1037"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1298239..1298856)
                     /gene="ykaA"
                     /locus_tag="BSU_12850"
                     /old_locus_tag="BSU12850"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 9696772, 14563871;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PitB transporter accessory protein"
                     /protein_id="NP_389168.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12850"
                     /db_xref="EnsemblGenomes-Tr:CAB13142"
                     /db_xref="InterPro:IPR018445"
                     /db_xref="SubtiList:BG13225"
                     /db_xref="UniProtKB/Swiss-Prot:O34454"
                     /translation="MIRRKKDKFSLLLTEIAKNIDETAEYFVNFKVTNQTTLKEFADT
                     LKEYETKGDNHVHVMIKELNKAFITPIEREDILQLTNSLDDVLDGIEHFSAMMEIFSI
                     TSSDEHIDKFSGYIRECAKEILITIELLAENRLKDIQPHAIKIKEYEHSCDNLHRKSL
                     KNLFGNETDPIKVIQYREIYETLEEIADSCQSVANNLETIIMKNA*"
     gene            complement(1298239..1298856)
                     /gene="ykaA"
                     /locus_tag="BSU_12850"
                     /old_locus_tag="BSU12850"
     promotor_-10    complement(1298892..1298911)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1036"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig="0.996003996003996"
                     /xcortree=2607
                     /SigmaFactorBS="aagatacgtttttttcgactttaCCTGTtttttttcgacaaa
                     aGGCTATATAATAATTTGATGtgtgcattgttcattcaaactatggagggtttttaat
                     g"
                     /listShort="ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1298894)
                     /Source="Nicolas_upshifts"
                     /id="U1036"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig="0.996003996003996"
                     /xcortree=2607
                     /SigmaFactorBS="aagatacgtttttttcgactttaCCTGTtttttttcgacaaa
                     aGGCTATATAATAATTTGATGtgtgcattgttcattcaaactatggagggtttttaat
                     g"
                     /listShort="ykaA, pit"
                     /GFF_Attribute="listLong"
     S_feature       complement(1298896..1298993)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1351139_1351236_c"
                     /HighExp="H2O2, Etha, dia15, Diami, Paraq, Heat, dia5,
                     Salt, LBGstat, Oxctl"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="0.972, 0.987"
                     /TUlongSig="SigA"
                     /TUlongPSig="0.992"
                     /label="S459"
     promotor_-35    complement(1298927..1298931)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1036"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig="0.996003996003996"
                     /xcortree=2607
                     /SigmaFactorBS="aagatacgtttttttcgactttaCCTGTtttttttcgacaaa
                     aGGCTATATAATAATTTGATGtgtgcattgttcattcaaactatggagggtttttaat
                     g"
                     /listShort="ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1298973..1298992)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1037"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.962037962037962"
                     /psig="0.972027972027972"
                     /xcortree=641
                     /SigmaFactorBS="atatactttttacgttaagcagaaagtttttgcaaacttGGG
                     TCGTTtttttaaagcgaagTAGGTCAAAATAAGGAGACAcgatttatcaaaaaagtca
                     a"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1298993)
                     /Source="Nicolas_upshifts"
                     /id="U1037"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.962037962037962"
                     /psig="0.972027972027972"
                     /xcortree=641
                     /SigmaFactorBS="atatactttttacgttaagcagaaagtttttgcaaacttGGG
                     TCGTTtttttaaagcgaagTAGGTCAAAATAAGGAGACAcgatttatcaaaaaagtca
                     a"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1299007..1299014)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1037"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.962037962037962"
                     /psig="0.972027972027972"
                     /xcortree=641
                     /SigmaFactorBS="atatactttttacgttaagcagaaagtttttgcaaacttGGG
                     TCGTTtttttaaagcgaagTAGGTCAAAATAAGGAGACAcgatttatcaaaaaagtca
                     a"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     misc_feature    complement(1299038..1299057)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1038"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.677322677322677"
                     /psig="0.987012987012987"
                     /xcortree=1829
                     /SigmaFactorBS="ggaaccgttttttggtgaaacagaagataaaagttgacagga
                     aaaacacaactTTTGATATACTTTTTACGTTaagcagaaagtttttgcaaacttgggt
                     c"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1299050)
                     /Source="Nicolas_upshifts"
                     /id="U1038"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.677322677322677"
                     /psig="0.987012987012987"
                     /xcortree=1829
                     /SigmaFactorBS="ggaaccgttttttggtgaaacagaagataaaagttgacagga
                     aaaacacaactTTTGATATACTTTTTACGTTaagcagaaagtttttgcaaacttgggt
                     c"
                     /listShort="S459, ykaA, pit"
                     /GFF_Attribute="listLong"
     CDS             complement(1299132..1300448)
                     /gene="steT"
                     /locus_tag="BSU_12860"
                     /old_locus_tag="BSU12860"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16850406, 17344220, 19419962, 20610400"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16850406,
                     17344220, 19419962, 20610400; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="serine / threonine exchanger"
                     /protein_id="NP_389169.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12860"
                     /db_xref="EnsemblGenomes-Tr:CAB13143"
                     /db_xref="GOA:O34739"
                     /db_xref="InterPro:IPR002293"
                     /db_xref="SubtiList:BG13227"
                     /db_xref="UniProtKB/Swiss-Prot:O34739"
                     /translation="MHTEDNGLKKEIGLLFALTLVIGTIIGSGVFMKPGAVLAYSGDS
                     KMALFAWLLGGILTLAGGLTIAEIGTQIPKTGGLYTYLEEVYGEFWGFLCGWVQIIIY
                     GPAIIGALGLYFGSLMANLFGWGSGLSKVIGIIAVLFLCVINIIGTKYGGFVQTLTTI
                     GKLIPIACIIVFGLWKGDQHIFTAVNESISDMNFGAAILATLFAYDGWILLAALGGEM
                     KNPEKLLPRAMTGGLLIVTAIYIFINFALLHILSANEIVTLGENATSTAATMLFGSIG
                     GKLISVGIIVSIFGCLNGKVLSFPRVSFAMAERKQLPFAEKLSHVHPSFRTPWIAISF
                     QIALALIMMLISNPDKLSEISIFMIYIFYVMAFFAVFILRKRAKGEKRAYSVPLYPFM
                     PILAIAGSFFVLGSTLITDTMSCGLSILIGLAGLPVYYGMKKRKAS*"
     gene            complement(1299132..1300448)
                     /gene="steT"
                     /locus_tag="BSU_12860"
                     /old_locus_tag="BSU12860"
     downshifts      complement(1299147)
                     /Source="Nicolas_upshifts"
                     /id="D700"
                     /incds=0
                     /nref=3
                     /ntot=92
                     /MaxReadThrough="3.59461"
                     /MaxDrop="3.97157"
                     /score="23.3119204"
                     /energy="-14.4"
                     /TU="U1039"
                     /idTUdmin="U1039"
                     /TUdmin="-88"
                     /isTUend="FALSE"
     promotor_-10    complement(1300495..1300514)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1039"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig="0.992007992007992"
                     /xcortree=2632
                     /SigmaFactorBS="gtacacaaagcaaatttcgaaaatcagaaaatttattttATT
                     TcacttttctaaaatAGGGTTTACAATATGAAAAAatagattcttcaacatgaagctt
                     c"
                     /listShort="ykbA"
                     /listLong="S459, ykaA, pit"
                     /label="promotor_-10"
     upshifts        complement(1300511)
                     /Source="Nicolas_upshifts"
                     /id="U1039"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig="0.992007992007992"
                     /xcortree=2632
                     /SigmaFactorBS="gtacacaaagcaaatttcgaaaatcagaaaatttattttATT
                     TcacttttctaaaatAGGGTTTACAATATGAAAAAatagattcttcaacatgaagctt
                     c"
                     /listShort="ykbA"
                     /listLong="S459, ykaA, pit"
     promotor_-35    complement(1300529..1300532)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1039"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.633366633366633"
                     /psig="0.992007992007992"
                     /xcortree=2632
                     /SigmaFactorBS="gtacacaaagcaaatttcgaaaatcagaaaatttattttATT
                     TcacttttctaaaatAGGGTTTACAATATGAAAAAatagattcttcaacatgaagctt
                     c"
                     /listShort="ykbA"
                     /listLong="S459, ykaA, pit"
                     /label="promotor_-35"
     promotor_-35    1300731..1300738
                     /Source="Nicolas_upshift_promotors"
                     /id="U1040"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.774225774225774"
                     /psig="0.964035964035964"
                     /xcortree=632
                     /SigmaFactorBS="tgaacgaaccttcggtgaagctgataTGTTGACTttctcatg
                     cgaataAAATACTTTGTTATTAGAACaataaatatacaattatgatatgatatctcga
                     a"
                     /listShort="S460, mhqA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1300753..1300772
                     /Source="Nicolas_upshift_promotors"
                     /id="U1040"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.774225774225774"
                     /psig="0.964035964035964"
                     /xcortree=632
                     /SigmaFactorBS="tgaacgaaccttcggtgaagctgataTGTTGACTttctcatg
                     cgaataAAATACTTTGTTATTAGAACaataaatatacaattatgatatgatatctcga
                     a"
                     /listShort="S460, mhqA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1300765..1300836
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1353008_1353079"
                     /HighExp="Etha, dia15, Salt, Heat, dia5, Diami, H2O2,
                     M9-stat, MG 25, BMM"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.964"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S460"
     upshifts        1300765
                     /Source="Nicolas_upshifts"
                     /id="U1040"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.774225774225774"
                     /psig="0.964035964035964"
                     /xcortree=632
                     /SigmaFactorBS="tgaacgaaccttcggtgaagctgataTGTTGACTttctcatg
                     cgaataAAATACTTTGTTATTAGAACaataaatatacaattatgatatgatatctcga
                     a"
                     /listShort="S460, mhqA"
                     /GFF_Attribute="listLong"
     CDS             1300837..1301787
                     /gene="mhqA"
                     /locus_tag="BSU_12870"
                     /old_locus_tag="BSU12870"
                     /EC_number="1.13.11.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:17407181, 17725564"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17407181, 17725564;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroquinone-specific extradiol dioxygenase"
                     /protein_id="NP_389170.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12870"
                     /db_xref="EnsemblGenomes-Tr:CAB13144"
                     /db_xref="GOA:O34689"
                     /db_xref="InterPro:IPR004360"
                     /db_xref="InterPro:IPR029068"
                     /db_xref="SubtiList:BG13228"
                     /db_xref="UniProtKB/Swiss-Prot:O34689"
                     /translation="MKVNGIHHVSALTADAQKNLDFYKKVLGLKLVKKSVNQDEPTMY
                     HLFYGDEVANPGTELTFFEIPRIAPFHAGTNSISSIGLRVPGTEALHYWKERFEEQQV
                     THSGISKRAGRDILAFQDHEGQRLVLTADEEGKGYGLPVKQSGIPEEFSFRGLGPVEL
                     TVPYAEPTLHVLTNILGFTEISREPVEGQGTAVILESGEGGAATEIHLIERNDLPRER
                     QGKGSVHHVAFRVRDEEELAGWHRIISREGFSNSGIVERYYFKALYFREPNGILFELS
                     TDGPGFMVDENLDELGQTIALPPYLEHRRAEIEAKLKPIQ*"
     gene            1300837..1301787
                     /gene="mhqA"
                     /locus_tag="BSU_12870"
                     /old_locus_tag="BSU12870"
     downshifts      1301775
                     /Source="Nicolas_upshifts"
                     /id="D701"
                     /incds=0
                     /nref=95
                     /ntot=231
                     /MaxReadThrough="0.70251"
                     /MaxDrop="5.11652"
                     /score="51.2936135"
                     /energy="-17.5"
                     /TU="NA"
                     /idTUdmin="U1040"
                     /TUdmin="-2"
                     /isTUend="TRUE"
     CDS             1301888..1302034
                     /locus_tag="BSU_12875"
                     /old_locus_tag="BSU12875"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513953.1"
                     /translation="MLIGRNGLKPFANMGDWYGMASAKILSLFINSLFIFACYTISKL
                     DKKE*"
     gene            1301888..1302034
                     /locus_tag="BSU_12875"
                     /old_locus_tag="BSU12875"
     CDS             1302042..1304192
                     /gene="ykcB"
                     /locus_tag="BSU_12880"
                     /old_locus_tag="BSU12880"
                     /EC_number="2.4.1.-"
                     /function="16.13: Shape"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     18175906; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative membrane glycosyl transferase"
                     /protein_id="NP_389171.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12880"
                     /db_xref="EnsemblGenomes-Tr:CAB13145"
                     /db_xref="GOA:O34575"
                     /db_xref="SubtiList:BG13229"
                     /db_xref="UniProtKB/Swiss-Prot:O34575"
                     /translation="MEKKKRELDIVLLLILLASAFLNIYNIWKDDTVNPYYTAAVTSM
                     MQSFHNFFYASFDAAGFITVDKPPVTYQIQTISALIFGMHGWSVILPQALAGVGSVLL
                     MYLLIKPTFGKTAARIASFVMACTPIAVAVARTNNVDALLVFFLLLATWLLFKAIRKG
                     KLIWLLAAFFVVGVGFNTKMLQAYMILPAFLLFYLIAANATIKKKIVSLVSALAVLAA
                     VSLSWPLIVDNIPASKRPYIGSSQTNSVLELAFGYNGIQRLTGQNSGGGQGAPNKDAS
                     KEMSSSDNTQAPPNQSSSNSSSSDGKSSNGNMAAPPSNGQMPSGGQGGPPSGGDGGQG
                     GPGGDGGKGGTGTGSKMQSGSGMFGTGTPGPLRLFQQELSDQISWLLPFAIFGIAGLL
                     IAGARERRRLSVEQKETVFWVAWLVPIAGFFSVAEFFHHYYLIMLAPPIAALVGAGWV
                     ALVHLYRNQTGWKAWLLPGAIIATTGFELFILRNYNDQIGVGWSIGVGVIGVLSAIAL
                     LLFKQRQKPFSYYVSLAALLALLVMPMYWASTPLLYGGNSSLPETGPQLASMSGKGMG
                     MSDATVNEKLIKYLEENNSGAEYLFATTDSNTAAPYIIKTKKAVMAIGGYSGSDPAIT
                     LTQFKKLVKEGKVKYFLASGMGRGGNNDIVEWVEKNGKEVASEKWQSSSDQKTENTDS
                     ADTSSSKASGENGKMGGPGGMNQSATLYELHADE*"
     gene            1302042..1304192
                     /gene="ykcB"
                     /locus_tag="BSU_12880"
                     /old_locus_tag="BSU12880"
     promotor_no_box 1302931..1303031
                     /Source="Nicolas_upshift_promotors"
                     /id="U1041"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.608391608391608"
                     /psig="0.000999000999001"
                     /xcortree=1488
                     /SigmaFactorBS="catcaagcgatggtaaatcctcaaatggcaatatggcggcgc
                     ctccatccaatggccaaatgccaagcggcggtcaaggaggccctccaagcggcggaga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        1302991
                     /Source="Nicolas_upshifts"
                     /id="U1041"
                     /multdbtbs="-"
                     /comp="M13"
                     /sig="Sig-"
                     /pcomp="0.608391608391608"
                     /psig="0.000999000999001"
                     /xcortree=1488
                     /SigmaFactorBS="catcaagcgatggtaaatcctcaaatggcaatatggcggcgc
                     ctccatccaatggccaaatgccaagcggcggtcaaggaggccctccaagcggcggaga
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      1303079
                     /Source="Nicolas_upshifts"
                     /id="D702"
                     /incds=1
                     /nref=4
                     /ntot=10
                     /MaxReadThrough="0.56615"
                     /MaxDrop="4.44711"
                     /score="51.2936135"
                     /energy="-17.5"
                     /TU="NA"
                     /idTUdmin="U1041"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             1304204..1305175
                     /gene="ykcC"
                     /locus_tag="BSU_12890"
                     /old_locus_tag="BSU12890"
                     /EC_number="2.4.-.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase"
                     /protein_id="NP_389172.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12890"
                     /db_xref="EnsemblGenomes-Tr:CAB13146"
                     /db_xref="GOA:O34319"
                     /db_xref="InterPro:IPR001173"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG13230"
                     /db_xref="UniProtKB/Swiss-Prot:O34319"
                     /translation="MSRHIQYSIVVPVYNEELVIHETYQRLKEVMDQTKENYELLFVN
                     DGSKDRSIEILREHSLIDPRVKIIDFSRNFGHQIAITAGMDYAQGNAIVVIDADLQDP
                     PELILEMIEKWKEGYEVVYAVRTKRKGETFFKKQTAAMFYRLLSGMTDIDIPIDTGDF
                     RLMDRKVCDEMKRLKEKNPFVRGLVSWVGFKQTAVEYVRDERLAGETKYPLKKMLKLS
                     MDGITTFSHKPLKLASYAGILMSGTGFLYMFIVLYLKLFTDSTITGWSSLIVIQLLFS
                     GIVLLILGVIGEYIGRIYDEAKDRPLYIVQKSYGIENKRLYRDQHMS*"
     gene            1304204..1305175
                     /gene="ykcC"
                     /locus_tag="BSU_12890"
                     /old_locus_tag="BSU12890"
     S_feature       complement(1304532..1305173)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1356775_1357416_c"
                     /HighExp="T-0.40H, T0.0H, Salt, T0.30H, T-1.10H, C30,
                     T-1.40H, S0, H2O2, T1.0H"
                     /AntisenseName="ykcC"
                     /AntisenseCor="9.6017422892053297E-4"
                     /AntisenseRegPval=0
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S461"
     downshifts      complement(1305218)
                     /Source="Nicolas_upshifts"
                     /id="D703"
                     /incds=0
                     /nref=9
                     /ntot=114
                     /MaxReadThrough="4.36795"
                     /MaxDrop="4.15844"
                     /score="4.98888048"
                     /energy="-19.1"
                     /TU="U1042"
                     /idTUdmin="U1044"
                     /TUdmin=489
                     /isTUend="FALSE"
     S_feature       complement(1305243..1305609)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1357486_1357852_c"
                     /HighExp="T1.0H, T1.30H, T0.30H, T2.0H, T0.0H, T2.30H,
                     T-0.40H, T3.0H, Salt, T-1.10H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99893799999999999"
                     /TUshortSig="SigWXY"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S462"
     downshifts      complement(1305286)
                     /Source="Nicolas_upshifts"
                     /id="D704"
                     /incds=0
                     /nref=17
                     /ntot=157
                     /MaxReadThrough="6.61192"
                     /MaxDrop="3.74411"
                     /score="4.98888048"
                     /energy="-19.1"
                     /TU="U1042"
                     /idTUdmin="U1044"
                     /TUdmin=421
                     /isTUend="FALSE"
     promotor_-10    complement(1305589..1305604)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1042"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1700
                     /SigmaFactorBS="agcggtctgaggctttttattagataaaagacctaattgttc
                     taTGAAACTTTCtgacgagatatCCGTATATCATACAGAttgacatcattcacatcag
                     a"
                     /listShort="S462, S461"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1305609)
                     /Source="Nicolas_upshifts"
                     /id="U1042"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1700
                     /SigmaFactorBS="agcggtctgaggctttttattagataaaagacctaattgttc
                     taTGAAACTTTCtgacgagatatCCGTATATCATACAGAttgacatcattcacatcag
                     a"
                     /listShort="S462, S461"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1305616..1305625)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1042"
                     /multdbtbs="-"
                     /comp="M9"
                     /sig="SigWXY"
                     /pcomp=1
                     /psig=1
                     /xcortree=1700
                     /SigmaFactorBS="agcggtctgaggctttttattagataaaagacctaattgttc
                     taTGAAACTTTCtgacgagatatCCGTATATCATACAGAttgacatcattcacatcag
                     a"
                     /listShort="S462, S461"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1305693..1307042)
                     /gene="htrA"
                     /locus_tag="BSU_12900"
                     /old_locus_tag="BSU12900"
                     /EC_number="3.4.21.107"
                     /function="16.6: Maintain"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10692364, 11133960, 11555295, 12823817, 24362423"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10692364, 11133960,
                     11555295, 12823817, 24362423; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane bound serine protease Do, quality
                     control protease and chaperone (heat-shock protein)"
                     /protein_id="NP_389173.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12900"
                     /db_xref="EnsemblGenomes-Tr:CAB13147"
                     /db_xref="GOA:O34358"
                     /db_xref="InterPro:IPR001478"
                     /db_xref="InterPro:IPR001940"
                     /db_xref="InterPro:IPR009003"
                     /db_xref="InterPro:IPR036034"
                     /db_xref="SubtiList:BG12608"
                     /db_xref="UniProtKB/Swiss-Prot:O34358"
                     /translation="MDNYRDENRTKGNENEVFLTKENDQSASYSARNVIHDQEKKKRG
                     FGWFRPLLGGVIGGSLALGIYTFTPLGDHDSQDTAKQSSSQQQTQSVTATSTSSESKK
                     SSSSSSAFKSEDSSKISDMVEDLSPAIVGITNLQAQSNSSLFGSSSSDSSEDTESGSG
                     SGVIFKKENGKAYIITNNHVVEGASSLKVSLYDGTEVTAKLVGSDSLTDLAVLQISDD
                     HVTKVANFGDSSDLRTGETVIAIGDPLGKDLSRTVTQGIVSGVDRTVSMSTSAGETSI
                     NVIQTDAAINPGNSGGPLLNTDGKIVGINSMKISEDDVEGIGFAIPSNDVKPIAEELL
                     SKGQIERPYIGVSMLDLEQVPQNYQEGTLGLFGSQLNKGVYIREVASGSPAEKAGLKA
                     EDIIIGLKGKEIDTGSELRNILYKDAKIGDTVEVKILRNGKEMTKKIKLDQKEEKTS*
                     "
     gene            complement(1305693..1307042)
                     /gene="htrA"
                     /locus_tag="BSU_12900"
                     /old_locus_tag="BSU12900"
     downshifts      complement(1305707)
                     /Source="Nicolas_upshifts"
                     /id="D705"
                     /incds=0
                     /nref=198
                     /ntot=244
                     /MaxReadThrough="2.95586"
                     /MaxDrop="5.35972"
                     /score="30.7234179"
                     /energy="-19.9"
                     /TU="NA"
                     /idTUdmin="U1044"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1307082..1307089
                     /Source="Nicolas_upshift_promotors"
                     /id="U1043"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig="0.999000999001"
                     /xcortree=2991
                     /SigmaFactorBS="tcatgttcactccgtttctctattttcacatgtctatttaTA
                     TTGATAggtttatgacttgaGTTTATCATAAACAAAAACTgtgggataaaaatgaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /listLong="proG"
                     /label="promotor_-35"
     promotor_-10    complement(1307094..1307113)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1044"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.865134865134865"
                     /psig="0.998001998001998"
                     /xcortree=1763
                     /SigmaFactorBS="tttccgcactttttcacaatttcccataatcttttcattttT
                     ATCCCACagtttttgttTATGATAAACTCAAGTCATAaacctatcaatataaatagac
                     a"
                     /listShort="htrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1307102
                     /Source="Nicolas_upshifts"
                     /id="U1043"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig="0.999000999001"
                     /xcortree=2991
                     /SigmaFactorBS="tcatgttcactccgtttctctattttcacatgtctatttaTA
                     TTGATAggtttatgacttgaGTTTATCATAAACAAAAACTgtgggataaaaatgaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /listLong="proG"
     promotor_-10    1307104..1307123
                     /Source="Nicolas_upshift_promotors"
                     /id="U1043"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.948051948051948"
                     /psig="0.999000999001"
                     /xcortree=2991
                     /SigmaFactorBS="tcatgttcactccgtttctctattttcacatgtctatttaTA
                     TTGATAggtttatgacttgaGTTTATCATAAACAAAAACTgtgggataaaaatgaaaa
                     g"
                     /GFF_Attribute="listShort"
                     /listLong="proG"
                     /label="promotor_-10"
     upshifts        complement(1307112)
                     /Source="Nicolas_upshifts"
                     /id="U1044"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.865134865134865"
                     /psig="0.998001998001998"
                     /xcortree=1763
                     /SigmaFactorBS="tttccgcactttttcacaatttcccataatcttttcattttT
                     ATCCCACagtttttgttTATGATAAACTCAAGTCATAaacctatcaatataaatagac
                     a"
                     /listShort="htrA"
                     /GFF_Attribute="listLong"
     S_feature       complement(1307114..1307196)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1359357_1359439_c"
                     /HighExp="Etha, dia5, S8, S6, T2.0H, T3.30H, dia15, T5.0H,
                     BC, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.682"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S463"
     promotor_-35    complement(1307124..1307131)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1044"
                     /multdbtbs="SigA"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.865134865134865"
                     /psig="0.998001998001998"
                     /xcortree=1763
                     /SigmaFactorBS="tttccgcactttttcacaatttcccataatcttttcattttT
                     ATCCCACagtttttgttTATGATAAACTCAAGTCATAaacctatcaatataaatagac
                     a"
                     /listShort="htrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1307153..1307159
                     /Source="Nicolas_upshift_promotors"
                     /id="U1045"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig="0.994005994005994"
                     /xcortree=2259
                     /SigmaFactorBS="aaaaactgtgggataaaaatgaaaagattatgggaaATTGTG
                     AaaaagtgcggaaaaCGGTACACTTCATATTGTATatgaaaggactgagtcgatggaa
                     c"
                     /listShort="proG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1307174..1307193
                     /Source="Nicolas_upshift_promotors"
                     /id="U1045"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig="0.994005994005994"
                     /xcortree=2259
                     /SigmaFactorBS="aaaaactgtgggataaaaatgaaaagattatgggaaATTGTG
                     AaaaagtgcggaaaaCGGTACACTTCATATTGTATatgaaaggactgagtcgatggaa
                     c"
                     /listShort="proG"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1307177
                     /Source="Nicolas_upshifts"
                     /id="U1045"
                     /multdbtbs="-"
                     /comp="M17"
                     /sig="SigA"
                     /pcomp="0.390609390609391"
                     /psig="0.994005994005994"
                     /xcortree=2259
                     /SigmaFactorBS="aaaaactgtgggataaaaatgaaaagattatgggaaATTGTG
                     AaaaagtgcggaaaaCGGTACACTTCATATTGTATatgaaaggactgagtcgatggaa
                     c"
                     /listShort="proG"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1307179..1307198)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1046"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.682317682317682"
                     /xcortree=624
                     /SigmaFactorBS="tcatatccgccatgctgccatatccaatcaatccaatctGTT
                     CcatcgactcagtcctTTCATATACAATATGAAGTGtaccgttttccgcactttttca
                     c"
                     /listShort="S463, htrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1307196)
                     /Source="Nicolas_upshifts"
                     /id="U1046"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.682317682317682"
                     /xcortree=624
                     /SigmaFactorBS="tcatatccgccatgctgccatatccaatcaatccaatctGTT
                     CcatcgactcagtcctTTCATATACAATATGAAGTGtaccgttttccgcactttttca
                     c"
                     /listShort="S463, htrA"
                     /GFF_Attribute="listLong"
     CDS             1307211..1308029
                     /gene="proCC"
                     /locus_tag="BSU_12910"
                     /old_locus_tag="BSU12910"
                     /EC_number="1.5.1.2"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11418582"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11418582; Product type e:
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="redundant pyrroline-5-carboxylate reductase"
                     /protein_id="NP_389174.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12910"
                     /db_xref="EnsemblGenomes-Tr:CAB13148"
                     /db_xref="GOA:Q00777"
                     /db_xref="InterPro:IPR000304"
                     /db_xref="InterPro:IPR008927"
                     /db_xref="InterPro:IPR028939"
                     /db_xref="InterPro:IPR029036"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG10841"
                     /db_xref="UniProtKB/Swiss-Prot:Q00777"
                     /translation="MEQIGLIGYGSMADMIARQLLKHEQIKENELFIETRTKGERLRA
                     LMSDYPNVSADPLENWANTCQLILICVPPLHVIETMRRLYPYVNRNTHIVSIAAGVPL
                     RLLEAETEAGISRVIPAITSEAEAGISLVVHSEALAAEKKERLNELLSVFSRVREIKE
                     SNLDVASNLTSSAPGFIAAIFEELALSAVRNSSLSKEEAFDFLIHSLYGTGKMLIEKN
                     MSFEETLERVATKGGITGEGAEVIHASVPDVFDEVFERTLRKYELLTEQVGKQT*"
     gene            1307211..1308029
                     /gene="proCC"
                     /locus_tag="BSU_12910"
                     /old_locus_tag="BSU12910"
     promotor_-35    complement(1307214..1307217)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1046"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.416583416583417"
                     /psig="0.682317682317682"
                     /xcortree=624
                     /SigmaFactorBS="tcatatccgccatgctgccatatccaatcaatccaatctGTT
                     CcatcgactcagtcctTTCATATACAATATGAAGTGtaccgttttccgcactttttca
                     c"
                     /listShort="S463, htrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1308007
                     /Source="Nicolas_upshifts"
                     /id="D706"
                     /incds=0
                     /nref=90
                     /ntot=220
                     /MaxReadThrough="1.3818"
                     /MaxDrop="4.43155"
                     /score="-5.08770006"
                     /energy="-5.3"
                     /TU="NA"
                     /idTUdmin="U1045"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1308086..1308093
                     /Source="Nicolas_upshift_promotors"
                     /id="U1047"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2874
                     /SigmaFactorBS="tttatcactgaatgattgagatttttcccagttaTATTGCAT
                     ttttcctcttttttTAATATAATTTGTTAGAATAttcataatttagtaaaaaaggagg
                     a"
                     /listShort="dppA, dppB, dppC, dppD, dppE, ykfA, ykfB,
                     ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1308108..1308127
                     /Source="Nicolas_upshift_promotors"
                     /id="U1047"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2874
                     /SigmaFactorBS="tttatcactgaatgattgagatttttcccagttaTATTGCAT
                     ttttcctcttttttTAATATAATTTGTTAGAATAttcataatttagtaaaaaaggagg
                     a"
                     /listShort="dppA, dppB, dppC, dppD, dppE, ykfA, ykfB,
                     ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1308112
                     /Source="Nicolas_upshifts"
                     /id="U1047"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.984015984015984"
                     /psig=1
                     /xcortree=2874
                     /SigmaFactorBS="tttatcactgaatgattgagatttttcccagttaTATTGCAT
                     ttttcctcttttttTAATATAATTTGTTAGAATAttcataatttagtaaaaaaggagg
                     a"
                     /listShort="dppA, dppB, dppC, dppD, dppE, ykfA, ykfB,
                     ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
     CDS             1308158..1308982
                     /gene="dppA"
                     /locus_tag="BSU_12920"
                     /old_locus_tag="BSU12920"
                     /EC_number="3.4.11.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11069674, 11473256, 19340926"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11069674, 11473256,
                     19340926; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-aminopeptidase"
                     /protein_id="NP_389175.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12920"
                     /db_xref="EnsemblGenomes-Tr:CAB13149"
                     /db_xref="GOA:P26902"
                     /db_xref="InterPro:IPR007035"
                     /db_xref="InterPro:IPR027476"
                     /db_xref="InterPro:IPR033824"
                     /db_xref="InterPro:IPR036177"
                     /db_xref="PDB:1HI9"
                     /db_xref="SubtiList:BG10842"
                     /db_xref="UniProtKB/Swiss-Prot:P26902"
                     /translation="MKLYMSVDMEGISGLPDDTFVDSGKRNYERGRLIMTEEANYCIA
                     EAFNSGCTEVLVNDSHSKMNNLMVEKLHPEADLISGDVKPFSMVEGLDDTFRGALFLG
                     YHARASTPGVMSHSMIFGVRHFYINDRPVGELGLNAYVAGYYDVPVLMVAGDDRAAKE
                     AEELIPNVTTAAVKQTISRSAVKCLSPAKAGRLLTEKTAFALQNKDKVKPLTPPDRPV
                     LSIEFANYGQAEWANLMPGTEIKTGTTTVQFQAKDMLEAYQAMLVMTELAMRTSFC*"
     gene            1308158..1308982
                     /gene="dppA"
                     /locus_tag="BSU_12920"
                     /old_locus_tag="BSU12920"
     CDS             1308999..1309925
                     /gene="dppB"
                     /locus_tag="BSU_12930"
                     /old_locus_tag="BSU12930"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1766370, 7536291, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1766370, 7536291,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter (permease)"
                     /protein_id="NP_389176.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12930"
                     /db_xref="EnsemblGenomes-Tr:CAB13150"
                     /db_xref="GOA:P26903"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10843"
                     /db_xref="UniProtKB/Swiss-Prot:P26903"
                     /translation="MARYMIKRFWAMAATILVITTLTFVLMKVIPGSPFNEERGTNEA
                     VQKNLEAYYHLDDPLIFQYIFYLKSIITFDFGPSIKKPSDSVNDMLERGFPVSFELGM
                     TAIVIAVISGLVLGVIAALRRNGFLDYAAMSLAVLGISIPNFILATLLIQQFAVNLKL
                     FPAATWTSPIHMVLPTAALAVGPMAIIARLTRSSMVEVLTQDYIRTAKAKGLSPFKII
                     VKHALRNALMPVITVLGTLVASILTGSFVIEKIFAIPGMGKYFVESINQRDYPVIMGT
                     TVFYSVILIIMLFLVDLAYGLLDPRIKLHKKG*"
     gene            1308999..1309925
                     /gene="dppB"
                     /locus_tag="BSU_12930"
                     /old_locus_tag="BSU12930"
     CDS             1309931..1310893
                     /gene="dppC"
                     /locus_tag="BSU_12940"
                     /old_locus_tag="BSU12940"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:1766370, 7536291, 15849754, 16850406"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 1766370, 7536291,
                     15849754, 16850406; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter (permease)"
                     /protein_id="NP_389177.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12940"
                     /db_xref="EnsemblGenomes-Tr:CAB13151"
                     /db_xref="GOA:P26904"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="InterPro:IPR025966"
                     /db_xref="InterPro:IPR035906"
                     /db_xref="SubtiList:BG10844"
                     /db_xref="UniProtKB/Swiss-Prot:P26904"
                     /translation="MNLPVQTDERQPEQHNQVPDEWFVLNQEKNREADSVKRPSLSYT
                     QDAWRRLKKNKLAMAGLFILLFLFVMAVIGPFLSPHSVVRQSLTEQNLPPSADHWFGT
                     DELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGRIDSIMMRIIEVL
                     YGLPYLLVVILLMVLMGPGLGTIIVALTVTGWVGMARIVRGQVLQIKNYEYVLASKTF
                     GAKTFRIIRKNLLPNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMAND
                     GLPTILSGHWWRLFFPAFFISLTMYAFNVLGDGLQDALDPKLRR*"
     gene            1309931..1310893
                     /gene="dppC"
                     /locus_tag="BSU_12940"
                     /old_locus_tag="BSU12940"
     promotor_-35    1310625..1310630
                     /Source="Nicolas_upshift_promotors"
                     /id="U1048"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=761
                     /SigmaFactorBS="cgcgaaaacctttcgcatcatccggaagaatttgctgcCGAA
                     TActatgggagcgatcaTCGTACAAATGACATTAACcgtacctgccgccatattcgca
                     g"
                     /listShort="dppD, dppE, ykfA, ykfB, ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1310646..1310664
                     /Source="Nicolas_upshift_promotors"
                     /id="U1048"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=761
                     /SigmaFactorBS="cgcgaaaacctttcgcatcatccggaagaatttgctgcCGAA
                     TActatgggagcgatcaTCGTACAAATGACATTAACcgtacctgccgccatattcgca
                     g"
                     /listShort="dppD, dppE, ykfA, ykfB, ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1310647
                     /Source="Nicolas_upshifts"
                     /id="U1048"
                     /multdbtbs="-"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=761
                     /SigmaFactorBS="cgcgaaaacctttcgcatcatccggaagaatttgctgcCGAA
                     TActatgggagcgatcaTCGTACAAATGACATTAACcgtacctgccgccatattcgca
                     g"
                     /listShort="dppD, dppE, ykfA, ykfB, ykfC, ykfD, S465"
                     /GFF_Attribute="listLong"
     CDS             1310898..1311905
                     /gene="dppD"
                     /locus_tag="BSU_12950"
                     /old_locus_tag="BSU12950"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7536291"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7536291; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter (ATP-binding subunit)"
                     /protein_id="NP_389178.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12950"
                     /db_xref="EnsemblGenomes-Tr:CAB13152"
                     /db_xref="GOA:P26905"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG10845"
                     /db_xref="UniProtKB/Swiss-Prot:P26905"
                     /translation="MEKVLSVQNLHVSFTTYGGTVQAVRGVSFDLYKGETFAIVGESG
                     CGKSVTSQSIMGLLPPYSAKVTDGRILFKNKDLCRLSDKEMRGIRGADISMIFQDPMT
                     ALNPTLTVGDQLGEALLRHKKMSKKAARKEVLSMLSLVGIPDPGERLKQYPHQFSGGM
                     RQRIVIAMALICEPDILIADEPTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGV
                     VAQVADRVAVMYAGKMAEIGTRKDIFYQPQHPYTKGLLGSVPRLDLNGAELTPIDGTP
                     PDLFSPPPGCPFAARCPNRMVVCDRVYPGQTIRSDSHTVNCWLQDQRAEHAVLSGDAK
                     D*"
     gene            1310898..1311905
                     /gene="dppD"
                     /locus_tag="BSU_12950"
                     /old_locus_tag="BSU12950"
     CDS             1311908..1313557
                     /gene="dppE"
                     /locus_tag="BSU_12960"
                     /old_locus_tag="BSU12960"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:7783641, 8793880, 11390694"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 7783641, 8793880,
                     11390694; Product type lp: lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter (dipeptide-binding
                     lipoprotein)"
                     /protein_id="NP_389179.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12960"
                     /db_xref="EnsemblGenomes-Tr:CAB13153"
                     /db_xref="GOA:P26906"
                     /db_xref="InterPro:IPR000914"
                     /db_xref="InterPro:IPR023765"
                     /db_xref="InterPro:IPR030678"
                     /db_xref="SubtiList:BG10846"
                     /db_xref="UniProtKB/Swiss-Prot:P26906"
                     /translation="MKRGKRMKRVKKLWGMGLALGLSFALMGCTANEQAGKEGSHDKA
                     KTSGEKVLYVNNENEPTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEPEPAMAEKWS
                     VSKDNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAY
                     NSGKGKKDDVKVTAKDDRTLEVTLEAPQKYFLSVVSNPAYFPVNEKVDKDNPKWFAES
                     DTFVGNGPFKLTEWKHDDSITMEKSDTYWDKDTVKLDKVKWAMVSDRNTDYQMFQSGE
                     LDTAYVPAELSDQLLDQDNVNIVDQAGLYFYRFNVNMEPFQNENIRKAFAMAVDQEEI
                     VKYVTKNNEKPAHAFVSPGFTQPDGKDFREAGGDLIKPNESKAKQLLEKGMKEENYNK
                     LPAITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKALKFQFSQSS
                     FLPDYADPISFLEAFQTGNSMNRTGWANKEYDQLIKQAKNEADEKTRFSLMHQAEELL
                     INEAPIIPVYFYNQVHLQNEQVKGIVRHPVGYIDLKWADKN*"
     gene            1311908..1313557
                     /gene="dppE"
                     /locus_tag="BSU_12960"
                     /old_locus_tag="BSU12960"
     downshifts      1313551
                     /Source="Nicolas_upshifts"
                     /id="D707"
                     /incds=0
                     /nref=2
                     /ntot=25
                     /MaxReadThrough="6.73127"
                     /MaxDrop="3.5888"
                     /score="22.838155"
                     /energy="-13.9"
                     /TU="U1047,U1048"
                     /idTUdmin="U1048"
                     /TUdmin="-4469"
                     /isTUend="FALSE"
     CDS             1313645..1314604
                     /gene="ldcA"
                     /locus_tag="BSU_12970"
                     /old_locus_tag="BSU12970"
                     /EC_number="3.4.17.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 10428950, 15101989,
                     18535144, 20944232, 24123814; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="muropeptide L,D-carboxypeptidase"
                     /protein_id="NP_389180.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12970"
                     /db_xref="EnsemblGenomes-Tr:CAB13154"
                     /db_xref="GOA:O34851"
                     /db_xref="InterPro:IPR003507"
                     /db_xref="InterPro:IPR027461"
                     /db_xref="InterPro:IPR027478"
                     /db_xref="InterPro:IPR029062"
                     /db_xref="SubtiList:BG13231"
                     /db_xref="UniProtKB/Swiss-Prot:O34851"
                     /translation="MKGVFSLNYKPKALNKGDTVGVIAPASPPDPKKLDTALLFLEEL
                     GLQVKLGKALKNQHGYLAGQDDERLADLHEMFRDDEVKAVLCACGGFGTGRIAAGIDF
                     SLIRKHPKIFWGYSDITFLHTAIHQNTGLVTFHGPMLSTDIGLDDVHPLTKASYKQLF
                     QETEFTYTEELSPLTELVPGKAEGELVGGNLSLLTSTLGTPFEIDTRGKLLFIEDIDE
                     EPYQIDRMLNQLKMGGKLTDAAGILVCDFHNCVPVKREKSLSLEQVLEDYIISAGRPA
                     LRGFKIGHCSPSIAVPIGAKAAMNTAEKTAVIEAGVSEGALKT*"
     gene            1313645..1314604
                     /gene="ldcA"
                     /locus_tag="BSU_12970"
                     /old_locus_tag="BSU12970"
     CDS             1314601..1315701
                     /gene="aeeB"
                     /locus_tag="BSU_12980"
                     /old_locus_tag="BSU12980"
                     /EC_number="5.1.1.20"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.5: Explore"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:11747447, 11747448, 15101989"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11747447, 11747448,
                     15101989; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="L-Ala-D/L-Glu epimerase"
                     /protein_id="NP_389181.1"
                     /db_xref="EnsemblGenomes-Gn:BSU12980"
                     /db_xref="EnsemblGenomes-Tr:CAB13155"
                     /db_xref="GOA:O34508"
                     /db_xref="InterPro:IPR013341"
                     /db_xref="InterPro:IPR013342"
                     /db_xref="InterPro:IPR029017"
                     /db_xref="InterPro:IPR029065"
                     /db_xref="InterPro:IPR034390"
                     /db_xref="InterPro:IPR036849"
                     /db_xref="PDB:1JPM"
                     /db_xref="PDB:1TKK"
                     /db_xref="SubtiList:BG13232"
                     /db_xref="UniProtKB/Swiss-Prot:O34508"
                     /translation="MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVG
                     WGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAA
                     VEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLK
                     IKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELV
                     EQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGIS
                     GAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFN
                     GGITYSGSTISMPGKPGLGIIGAALLKGEKEQ*"
     gene            1314601..1315701
                     /gene="aeeB"
                     /locus_tag="BSU_12980"
                     /old_locus_tag="BSU12980"
     CDS             1315698..1316588
                     /gene="eepC"
                     /locus_tag="BSU_12990"
                     /old_locus_tag="BSU12990"
                     /EC_number="3.4.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:15101989, 20944232"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15101989, 20944232;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-D-glutamyl-L-diaminoacid endopeptidase"
                     /protein_id="NP_389182.2"
                     /db_xref="EnsemblGenomes-Gn:BSU12990"
                     /db_xref="EnsemblGenomes-Tr:CAB13156"
                     /db_xref="GOA:O35010"
                     /db_xref="InterPro:IPR000064"
                     /db_xref="SubtiList:BG13233"
                     /db_xref="UniProtKB/Swiss-Prot:O35010"
                     /translation="MMHTVISAVANIWTAPDSPRPSDQFMLQPTVMIRDWLERMTYDE
                     RLGLCTDNVIQTQVLFGEKVLVTAEQGEWVSVIVPSQPSRKDPRGYPGWMKKYQLEKT
                     KPIHTQHDVMISKPAAFLYRSNGEKEIELSFLTVLPLIAKENGYFKVSTVFGERFVRQ
                     SDAVPVSQQKGTAEDIIQTGAFFLGLPYLWGGISGFGFDCSGFMYSIFKANGYSIPRD
                     AGDQAKAGKGVPLDDMKAGDLLFFAYEEGKGAIHHVGLYVGGGKMLHSPKTGKSIEIL
                     TLTETIYEKELCAVRRCFSE*"
     gene            1315698..1316588
                     /gene="eepC"
                     /locus_tag="BSU_12990"
                     /old_locus_tag="BSU12990"
     CDS             1316601..1317590
                     /gene="ykfD"
                     /locus_tag="BSU_13000"
                     /old_locus_tag="BSU13000"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15101989; Product type
                     t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative cell wall oligopeptide ABC transporter
                     (ATP binding protein)"
                     /protein_id="NP_389183.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13000"
                     /db_xref="EnsemblGenomes-Tr:CAB13157"
                     /db_xref="GOA:C0SP98"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013563"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13234"
                     /db_xref="UniProtKB/Swiss-Prot:C0SP98"
                     /translation="MRRLPLLEVSQLKMHFDAGKKRTVKAVDGVTFQIREGETFGLVG
                     ESGCGKSTLGRVLMRLYQPTEGSVTYRGTNLHALSEKEQFAFNRKLQMIFQDPYASLN
                     PRMTVREIILEPMEIHNLYNTHKARLLVVDELLEAVGLHPDFGSRYPHEFSGGQRQRI
                     GIARALSLNPEFIVADEPISALDVSVQAQVVNLLKRLQKEKGLTFLFIAHDLSMVKHI
                     SDRIGVMYLGHMMEITESGTLYREPLHPYTKALLSSIPIPDPELEDKRERILLKGELP
                     SPVNPPSGCVFRTRCPEAMPECGESRPQLQEIEPGRFVACHLYRNAETKEKVR*"
     gene            1316601..1317590
                     /gene="ykfD"
                     /locus_tag="BSU_13000"
                     /old_locus_tag="BSU13000"
     S_feature       complement(1316884..1317611)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1369127_1369854_c"
                     /HighExp="Etha, S7, Gly, M40t90, C30, H2O2, M0t90, dia15,
                     T1.0H, S8"
                     /AntisenseName="ykfD"
                     /AntisenseCor="-6.3474114158352593E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S464"
     downshifts      1317580
                     /Source="Nicolas_upshifts"
                     /id="D708"
                     /incds=0
                     /nref=1
                     /ntot=91
                     /MaxReadThrough="5.08319"
                     /MaxDrop="3.1399"
                     /score="-3.10371155"
                     /energy="-13.9"
                     /TU="U1047,U1048"
                     /idTUdmin="U1048"
                     /TUdmin="-440"
                     /isTUend="FALSE"
     S_feature       1317625..1318793
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1369868_1371036"
                     /HighExp="T3.30H, T4.0H, T3.0H, T5.0H, T2.30H, T2.0H, S1,
                     M9-stat, T1.30H, HiOs"
                     /AntisenseName="ykgB"
                     /AntisenseCor="-0.33524952291190102"
                     /AntisenseRegPval="-7.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF, SigA"
                     /TUshortPSig="0.997, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S465"
     CDS             complement(1317633..1318682)
                     /gene="pgl"
                     /locus_tag="BSU_13010"
                     /old_locus_tag="BSU13010"
                     /EC_number="3.1.1.31"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:22960854, 28032445"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22960854, 28032445;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="NP_389184.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13010"
                     /db_xref="EnsemblGenomes-Tr:CAB13158"
                     /db_xref="GOA:O34499"
                     /db_xref="InterPro:IPR011048"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="InterPro:IPR019405"
                     /db_xref="SubtiList:BG13236"
                     /db_xref="UniProtKB/Swiss-Prot:O34499"
                     /translation="MTKYIGYVGTYTKGGSEGIYSFELDTEKKALSEPKLAAKLGNPT
                     YVATNKNNTILYSIEKADGQGGVAAYQIDKNSGELTFLNHQLIDGPSPCHVSVDDQNQ
                     FVLTANYHSGKVHVFPVQEDGSLQSPVSEAAHTGKGPHERQEKPHTHYAGFTPEHNYV
                     VAVDLGIDKLYTYKLKDGVLTESGSHSFAPGAGPRHIAFHPKEKYAYVMTELSNEVIA
                     LEYNPTAGEFREIQVVSAIPDDFTDNSQGSAIHVTQDGRFVYVANRGHDSIAVFEVNQ
                     YSGELAFVERVSTEGNWPRDFVFDPTEGFLVASNEETGNLVLFERDKETGRLTLLPST
                     VSVPYPVCVKFLHQV*"
     gene            complement(1317633..1318682)
                     /gene="pgl"
                     /locus_tag="BSU_13010"
                     /old_locus_tag="BSU13010"
     downshifts      complement(1317656)
                     /Source="Nicolas_upshifts"
                     /id="D709"
                     /incds=0
                     /nref=208
                     /ntot=262
                     /MaxReadThrough="5.12776"
                     /MaxDrop="6.0668"
                     /score="24.6986564"
                     /energy="-15.6"
                     /TU="U1050"
                     /idTUdmin="U1049"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(1318709..1318728)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1049"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=2235
                     /SigmaFactorBS="ggcgaatgaagaatcttcccctttttcatgTTTTGAACagct
                     tattttatcaAGATACGTTAATATAGAGGTgacatcatttttaagggggaaatcgcat
                     g"
                     /listShort="ykgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1318720)
                     /Source="Nicolas_upshifts"
                     /id="U1049"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=2235
                     /SigmaFactorBS="ggcgaatgaagaatcttcccctttttcatgTTTTGAACagct
                     tattttatcaAGATACGTTAATATAGAGGTgacatcatttttaagggggaaatcgcat
                     g"
                     /listShort="ykgB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1318743..1318750)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1049"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.524475524475524"
                     /psig="0.996003996003996"
                     /xcortree=2235
                     /SigmaFactorBS="ggcgaatgaagaatcttcccctttttcatgTTTTGAACagct
                     tattttatcaAGATACGTTAATATAGAGGTgacatcatttttaagggggaaatcgcat
                     g"
                     /listShort="ykgB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1318772..1319632)
                     /gene="ddaH"
                     /locus_tag="BSU_13020"
                     /old_locus_tag="BSU13020"
                     /EC_number="3.5.3.18"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 27258038; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="N(G),N(G)-dimethylarginine
                     dimethylaminohydrolase"
                     /protein_id="NP_389185.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13020"
                     /db_xref="EnsemblGenomes-Tr:CAB13159"
                     /db_xref="GOA:O34497"
                     /db_xref="InterPro:IPR033199"
                     /db_xref="SubtiList:BG13235"
                     /db_xref="UniProtKB/Swiss-Prot:O34497"
                     /translation="MDVSIPKSQHKTVCRTEYGTLQKVILCKPEHMTIKDVINETQKH
                     FEDDNIHVKTANDQHSRLVEALRSHNVEVVLLPVRDGLPEQVFTRDIGFVIGEKAFLS
                     SMTEPIRQGEEAVIKDFFHSQGISYTRMLDTSIEGGDVIIDDDIVYVGISQRTDISAI
                     GQLEEALPEYTIVPVKLHEKFLHLDCVFNIISESEALIYSQAIEPDAADMLAKRYDLI
                     EVPEDEQFTLGTNVLSIGKKTIISLPGNRHVNQQLSKRGYHIIEIDLSEIIKSGGSFR
                     CCTMPLIRGE*"
     gene            complement(1318772..1319632)
                     /gene="ddaH"
                     /locus_tag="BSU_13020"
                     /old_locus_tag="BSU13020"
     promotor_-10    complement(1319657..1319675)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1050"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=242
                     /SigmaFactorBS="aaacaatattctcttccatttgtctaaaatttaaaatGGTTT
                     AAtgattttcatgatgaGGGAATAATAAATGTATTCttcacactttaggaggaaaaac
                     a"
                     /listShort="ykgA, ykgB, S464"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1319674)
                     /Source="Nicolas_upshifts"
                     /id="U1050"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=242
                     /SigmaFactorBS="aaacaatattctcttccatttgtctaaaatttaaaatGGTTT
                     AAtgattttcatgatgaGGGAATAATAAATGTATTCttcacactttaggaggaaaaac
                     a"
                     /listShort="ykgA, ykgB, S464"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1319691..1319697)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1050"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=242
                     /SigmaFactorBS="aaacaatattctcttccatttgtctaaaatttaaaatGGTTT
                     AAtgattttcatgatgaGGGAATAATAAATGTATTCttcacactttaggaggaaaaac
                     a"
                     /listShort="ykgA, ykgB, S464"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1319706..1319713
                     /Source="Nicolas_upshift_promotors"
                     /id="U1051"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig=1
                     /xcortree=2004
                     /SigmaFactorBS="cctcatcatgaaaatcattaaaccattttaaaTTTTAGACaa
                     atggaagagaaTATTGTTTAATAGGAGAATAtaagtgcatttagctaaaagatcagac
                     a"
                     /listShort="ykhA, S466, hmp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1319727..1319746
                     /Source="Nicolas_upshift_promotors"
                     /id="U1051"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig=1
                     /xcortree=2004
                     /SigmaFactorBS="cctcatcatgaaaatcattaaaccattttaaaTTTTAGACaa
                     atggaagagaaTATTGTTTAATAGGAGAATAtaagtgcatttagctaaaagatcagac
                     a"
                     /listShort="ykhA, S466, hmp"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1319734
                     /Source="Nicolas_upshifts"
                     /id="U1051"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.933066933066933"
                     /psig=1
                     /xcortree=2004
                     /SigmaFactorBS="cctcatcatgaaaatcattaaaccattttaaaTTTTAGACaa
                     atggaagagaaTATTGTTTAATAGGAGAATAtaagtgcatttagctaaaagatcagac
                     a"
                     /listShort="ykhA, S466, hmp"
                     /GFF_Attribute="listLong"
     CDS             1319792..1320310
                     /gene="ykhA"
                     /locus_tag="BSU_13030"
                     /old_locus_tag="BSU13030"
                     /EC_number="3.1.2.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12426338, 18247525,
                     24623648, 24722906; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="promiscuous acyl-CoA thioesterase"
                     /protein_id="NP_389186.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13030"
                     /db_xref="EnsemblGenomes-Tr:CAB13160"
                     /db_xref="GOA:P49851"
                     /db_xref="InterPro:IPR006683"
                     /db_xref="InterPro:IPR029069"
                     /db_xref="InterPro:IPR033120"
                     /db_xref="SubtiList:BG11417"
                     /db_xref="UniProtKB/Swiss-Prot:P49851"
                     /translation="METPETRFCKESKVVKTSRVFPLDTNNHNTLFGGKLMSYIDDIA
                     SISAARHCRRETVTASMDSVDFLKPIGQKDSVCLESYVTWVGTSSMEVFVKVIKEHLM
                     TGERELAATSFLTFVALDSNGKPVPVPRVVPETEEEIMLHNTAVQRANERKNRKRHSQ
                     ALANALGTDKPW*"
     gene            1319792..1320310
                     /gene="ykhA"
                     /locus_tag="BSU_13030"
                     /old_locus_tag="BSU13030"
     downshifts      1320301
                     /Source="Nicolas_upshifts"
                     /id="D710"
                     /incds=0
                     /nref=34
                     /ntot=265
                     /MaxReadThrough="4.66856"
                     /MaxDrop="4.77681"
                     /score="24.0889455"
                     /energy="-10.9"
                     /TU="U1051"
                     /idTUdmin="U1051"
                     /TUdmin="-1436"
                     /isTUend="FALSE"
     promotor_-35    1320375..1320381
                     /Source="Nicolas_upshift_promotors"
                     /id="U1052"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=854
                     /SigmaFactorBS="tgttttgggtttttttgtacttttcaatggtgattattacaa
                     TGGTTAGtccgtttttgctaGGGGATTCTATAaaaaagcaacaaatgtcatgttaaat
                     t"
                     /listShort="S466, hmp"
                     /listLong="S467, ykjA, ykkA"
                     /label="promotor_-35"
     S_feature       1320393..1320499
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1372636_1372742"
                     /HighExp="Etha, S5, S6, S8, nit, S7, ferm, S4, dia15,
                     dia5"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF, SigA"
                     /TUshortPSig="0.998, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S466"
     upshifts        1320393
                     /Source="Nicolas_upshifts"
                     /id="U1052"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=854
                     /SigmaFactorBS="tgttttgggtttttttgtacttttcaatggtgattattacaa
                     TGGTTAGtccgtttttgctaGGGGATTCTATAaaaaagcaacaaatgtcatgttaaat
                     t"
                     /listShort="S466, hmp"
                     /listLong="S467, ykjA, ykkA"
     promotor_-10    1320395..1320406
                     /Source="Nicolas_upshift_promotors"
                     /id="U1052"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=854
                     /SigmaFactorBS="tgttttgggtttttttgtacttttcaatggtgattattacaa
                     TGGTTAGtccgtttttgctaGGGGATTCTATAaaaaagcaacaaatgtcatgttaaat
                     t"
                     /listShort="S466, hmp"
                     /listLong="S467, ykjA, ykkA"
                     /label="promotor_-10"
     promotor_-35    1320474..1320477
                     /Source="Nicolas_upshift_promotors"
                     /id="U1053"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.452547452547453"
                     /psig="0.99000999000999"
                     /xcortree=1618
                     /SigmaFactorBS="ttgtgacaactttattaaagattcattttagatATATctttt
                     attcgtaagaTCATGTATTTTAAAGATATAttttaaatacatcttttcgaaaggattg
                     t"
                     /listShort="hmp, S467, ykjA, ykkA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1320493..1320512
                     /Source="Nicolas_upshift_promotors"
                     /id="U1053"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.452547452547453"
                     /psig="0.99000999000999"
                     /xcortree=1618
                     /SigmaFactorBS="ttgtgacaactttattaaagattcattttagatATATctttt
                     attcgtaagaTCATGTATTTTAAAGATATAttttaaatacatcttttcgaaaggattg
                     t"
                     /listShort="hmp, S467, ykjA, ykkA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1320501
                     /Source="Nicolas_upshifts"
                     /id="U1053"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.452547452547453"
                     /psig="0.99000999000999"
                     /xcortree=1618
                     /SigmaFactorBS="ttgtgacaactttattaaagattcattttagatATATctttt
                     attcgtaagaTCATGTATTTTAAAGATATAttttaaatacatcttttcgaaaggattg
                     t"
                     /listShort="hmp, S467, ykjA, ykkA"
                     /GFF_Attribute="listLong"
     CDS             1320549..1321748
                     /gene="hmpA"
                     /locus_tag="BSU_13040"
                     /old_locus_tag="BSU13040"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:10658656, 10972836, 12469342, 15231799, 15751990,
                     16261196, 16517672, 17293416, 24214949, 26786044"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10658656, 10972836,
                     12469342, 15231799, 15751990, 16261196, 16517672,
                     17293416, 24214949, 26786044; Product type c: carrier"
                     /codon_start=1
                     /transl_table=11
                     /product="flavohemoglobin"
                     /protein_id="NP_389187.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13040"
                     /db_xref="EnsemblGenomes-Tr:CAB13161"
                     /db_xref="GOA:P49852"
                     /db_xref="InterPro:IPR000971"
                     /db_xref="InterPro:IPR001221"
                     /db_xref="InterPro:IPR001433"
                     /db_xref="InterPro:IPR008333"
                     /db_xref="InterPro:IPR009050"
                     /db_xref="InterPro:IPR017927"
                     /db_xref="InterPro:IPR017938"
                     /db_xref="InterPro:IPR023950"
                     /db_xref="SubtiList:BG11418"
                     /db_xref="UniProtKB/Swiss-Prot:P49852"
                     /translation="MLDNKTIEIIKSTVPVLQQHGETITGRFYDRMFQDHPELLNIFN
                     QTNQKKKTQRTALANAVIAAAANIDQLGNIIPVVKQIGHKHRSIGIKPEHYPIVGKYL
                     LIAIKDVLGDAATPDIMQAWEKAYGVIADAFIGIEKDMYEQAEEQAGGWKEYKPFVIA
                     KKERESKEITSFYLKPEDSKPLPEFQAGQYISIKVRIPDSEYTHIRQYSLSDMPGKDY
                     YRISVKKDGVVSSYLHDGLQEGDSIEISAPAGDFVLDHASQKDLVLISAGVGITPMIS
                     MLKTSVSKQPERQILFIHAAKNSEYHALRHEVEEAAKHSAVKTAFVYREPTEEDRAGD
                     LHFHEGQIDQQFLKELIANTDADYYICGSPSFITAMHKLVSELGSAPESIHYELFGPQ
                     LSLAQSV*"
     gene            1320549..1321748
                     /gene="hmpA"
                     /locus_tag="BSU_13040"
                     /old_locus_tag="BSU13040"
     downshifts      1321737
                     /Source="Nicolas_upshifts"
                     /id="D711"
                     /incds=0
                     /nref=10
                     /ntot=59
                     /MaxReadThrough="6.06442"
                     /MaxDrop="4.19301"
                     /score="11.2868967"
                     /energy="-9.3"
                     /TU="U1053"
                     /idTUdmin="U1051"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       1321782..1322153
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1374025_1374396"
                     /HighExp="nit, B36, B60, Etha, BI, M40t90, LBGtran, M0t90,
                     BT, S6"
                     /AntisenseName="ykzH"
                     /AntisenseCor="7.6554747052539299E-2"
                     /AntisenseRegPval="-0.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.99"
                     /TUlongSig="SigGF"
                     /TUlongPSig="0.998"
                     /label="S467"
     CDS             complement(1321825..1322049)
                     /gene="ykzH"
                     /locus_tag="BSU_13050"
                     /old_locus_tag="BSU13050"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389188.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13050"
                     /db_xref="EnsemblGenomes-Tr:CAB13162"
                     /db_xref="SubtiList:BG13336"
                     /db_xref="UniProtKB/Swiss-Prot:O31653"
                     /translation="MKNQKSNTLWPFDLPLAPQPEGYQQQTIDRLAGLELRMKQLIRA
                     IEVNNELLRTMQEQQNRVCTNGSGSVIVRM*"
     gene            complement(1321825..1322049)
                     /gene="ykzH"
                     /locus_tag="BSU_13050"
                     /old_locus_tag="BSU13050"
     promotor_-35    1322129..1322135
                     /Source="Nicolas_upshift_promotors"
                     /id="U1054"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=927
                     /SigmaFactorBS="gttcaggcgatatgcacgttcgcctagacactgaTGCATAGa
                     gggcctgccacgGGGCACAATAGGctcaatatgaccagcggatggaggtaaagatcgg
                     t"
                     /listShort="ykjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1322149..1322160
                     /Source="Nicolas_upshift_promotors"
                     /id="U1054"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=927
                     /SigmaFactorBS="gttcaggcgatatgcacgttcgcctagacactgaTGCATAGa
                     gggcctgccacgGGGCACAATAGGctcaatatgaccagcggatggaggtaaagatcgg
                     t"
                     /listShort="ykjA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1322155
                     /Source="Nicolas_upshifts"
                     /id="U1054"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=927
                     /SigmaFactorBS="gttcaggcgatatgcacgttcgcctagacactgaTGCATAGa
                     gggcctgccacgGGGCACAATAGGctcaatatgaccagcggatggaggtaaagatcgg
                     t"
                     /listShort="ykjA"
                     /GFF_Attribute="listLong"
     CDS             1322194..1322925
                     /gene="ykjA"
                     /locus_tag="BSU_13060"
                     /old_locus_tag="BSU13060"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein of unknown function"
                     /protein_id="NP_389189.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13060"
                     /db_xref="EnsemblGenomes-Tr:CAB13163"
                     /db_xref="GOA:P49853"
                     /db_xref="InterPro:IPR007353"
                     /db_xref="InterPro:IPR023090"
                     /db_xref="SubtiList:BG11419"
                     /db_xref="UniProtKB/Swiss-Prot:P49853"
                     /translation="MLWMVWVFLLKPVIVFSIAYILFRLAGKKAVSQMNNFDLLLTFA
                     IGTIISEPILTSKLPMSIYYAGAFLVLYLIMSKLSLSNKWRWLLVVSPTVLIRNGDID
                     ERGLRKERLTVNELLGKLREKGYADPADIDLAIIEETGEVSVIPKEEARAVQVRDLNM
                     EAERNFIPIPLILDGEILDHNLKYLQKNRSWLFEKLEEKGYSPKLLSSIILGTMNARG
                     DISLDLNTANEPQHDPYLYKPGNNN*"
     gene            1322194..1322925
                     /gene="ykjA"
                     /locus_tag="BSU_13060"
                     /old_locus_tag="BSU13060"
     downshifts      1322903
                     /Source="Nicolas_upshifts"
                     /id="D712"
                     /incds=0
                     /nref=14
                     /ntot=29
                     /MaxReadThrough="2.84532"
                     /MaxDrop="4.44655"
                     /score="17.2468985"
                     /energy="-7.2"
                     /TU="U1053"
                     /idTUdmin="U1054"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1322964..1322972
                     /Source="Nicolas_upshift_promotors"
                     /id="U1055"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=551
                     /SigmaFactorBS="ctctctcttgtaatgagagcttttttcttttttAAAGGGAAT
                     ttttgtttggTGTCAAATGTACCTAGTTAggaggggaactgaacatgaaggacttatc
                     c"
                     /listShort="ykkA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1322983..1323001
                     /Source="Nicolas_upshift_promotors"
                     /id="U1055"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=551
                     /SigmaFactorBS="ctctctcttgtaatgagagcttttttcttttttAAAGGGAAT
                     ttttgtttggTGTCAAATGTACCTAGTTAggaggggaactgaacatgaaggacttatc
                     c"
                     /listShort="ykkA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1322991
                     /Source="Nicolas_upshifts"
                     /id="U1055"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=551
                     /SigmaFactorBS="ctctctcttgtaatgagagcttttttcttttttAAAGGGAAT
                     ttttgtttggTGTCAAATGTACCTAGTTAggaggggaactgaacatgaaggacttatc
                     c"
                     /listShort="ykkA"
                     /GFF_Attribute="listLong"
     CDS             1323017..1323544
                     /gene="ykkA"
                     /locus_tag="BSU_13070"
                     /old_locus_tag="BSU13070"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389190.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13070"
                     /db_xref="EnsemblGenomes-Tr:CAB13164"
                     /db_xref="InterPro:IPR024775"
                     /db_xref="InterPro:IPR034660"
                     /db_xref="SubtiList:BG11420"
                     /db_xref="UniProtKB/Swiss-Prot:P49854"
                     /translation="MKDLSIRNDMAPTVSLLYSAVEENSLRLASIVSHMTHSELYYKG
                     RCQTKNSTAQLLHHITNVDIRWVWRIKENRIPDHIEQAYGPMTDESGRLPEPVNQPDL
                     DELLKRHQHVVEKLKSVCFTLTENALNQPLSFEGDTATIRWGIWHMADHNRYHQAHIE
                     ALKKEWKQDVAKYER*"
     gene            1323017..1323544
                     /gene="ykkA"
                     /locus_tag="BSU_13070"
                     /old_locus_tag="BSU13070"
     CDS             1323534..1324052
                     /gene="ykkB"
                     /locus_tag="BSU_13080"
                     /old_locus_tag="BSU13080"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 12793527; Product type
                     e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative N-acetyltransferase"
                     /protein_id="NP_389191.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13080"
                     /db_xref="EnsemblGenomes-Tr:CAB13165"
                     /db_xref="GOA:P49855"
                     /db_xref="InterPro:IPR000182"
                     /db_xref="InterPro:IPR016181"
                     /db_xref="SubtiList:BG11421"
                     /db_xref="UniProtKB/Swiss-Prot:P49855"
                     /translation="MNAKTKLVTDRIRLRCMEDRDQATLFGLLFNDPDVMTYYSGLKD
                     KRQTREWVNWNQRNEKGYGVSLWIAEDKRTGEFLGQCGIVPQQIENQTVMEIGYMFAR
                     RHWGNGYAQEAARACLDYGFNERQFGKMAALIDPGNKASIRVAEKIGMHYSKTIRKWN
                     KPIAVYERKSYN*"
     gene            1323534..1324052
                     /gene="ykkB"
                     /locus_tag="BSU_13080"
                     /old_locus_tag="BSU13080"
     promotor_-35    1324046..1324053
                     /Source="Nicolas_upshift_promotors"
                     /id="U1056"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.838161838161838"
                     /psig=1
                     /xcortree=3144
                     /SigmaFactorBS="gaataaaccgatcgcggtatatgaaagaaaatcttaCAATTG
                     AAagatagagctgagTTTAGTATCATGATATCATGtaaagttttctagggttccgcat
                     g"
                     /listShort="NA, ykkC, ykkD"
                     /listLong="purU"
                     /label="promotor_-35"
     promotor_-10    1324067..1324086
                     /Source="Nicolas_upshift_promotors"
                     /id="U1056"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.838161838161838"
                     /psig=1
                     /xcortree=3144
                     /SigmaFactorBS="gaataaaccgatcgcggtatatgaaagaaaatcttaCAATTG
                     AAagatagagctgagTTTAGTATCATGATATCATGtaaagttttctagggttccgcat
                     g"
                     /listShort="NA, ykkC, ykkD"
                     /listLong="purU"
                     /label="promotor_-10"
     upshifts        1324070
                     /Source="Nicolas_upshifts"
                     /id="U1056"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.838161838161838"
                     /psig=1
                     /xcortree=3144
                     /SigmaFactorBS="gaataaaccgatcgcggtatatgaaagaaaatcttaCAATTG
                     AAagatagagctgagTTTAGTATCATGATATCATGtaaagttttctagggttccgcat
                     g"
                     /listShort="NA, ykkC, ykkD"
                     /listLong="purU"
     misc_RNA        1324085..1324196
                     /gene="gdwA"
                     /locus_tag="BSU_misc_RNA_16"
                     /product="guanidine-sensing riboswitch (binds free
                     guanidinium)"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 17908319, 21317561,
                     27989440, 28001368, 28017522, 28107646, 28212758; Product
                     type n: RNA"
     gene            1324085..1324196
                     /gene="gdwA"
                     /locus_tag="BSU_misc_RNA_16"
     downshifts      1324159
                     /Source="Nicolas_upshifts"
                     /id="D713"
                     /incds=0
                     /nref=205
                     /ntot=246
                     /MaxReadThrough="3.70824"
                     /MaxDrop="6.58389"
                     /score="30.3456563"
                     /energy="-18.5"
                     /TU="U1056"
                     /idTUdmin="U1056"
                     /TUdmin="-789"
                     /isTUend="FALSE"
     CDS             1324274..1324612
                     /gene="gdnC"
                     /locus_tag="BSU_13090"
                     /old_locus_tag="BSU13090"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10735877, 10931887, 15096624, 28001372"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10735877, 10931887,
                     15096624, 28001372; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="guanidinium efflux transporter subunit"
                     /protein_id="NP_389192.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13090"
                     /db_xref="EnsemblGenomes-Tr:CAB13166"
                     /db_xref="GOA:P49856"
                     /db_xref="InterPro:IPR000390"
                     /db_xref="SubtiList:BG11422"
                     /db_xref="UniProtKB/Swiss-Prot:P49856"
                     /translation="MKWGLVVLAAVFEVVWVIGLKHADSALTWSGTAIGIIFSFYLLM
                     KATHSLPVGTVYAVFTGLGTAGTVLSEIVLFHEPVGWPKLLLIGVLLIGVIGLKLVTQ
                     DETEEKGGEA*"
     gene            1324274..1324612
                     /gene="gdnC"
                     /locus_tag="BSU_13090"
                     /old_locus_tag="BSU13090"
     CDS             1324612..1324929
                     /gene="gdnD"
                     /locus_tag="BSU_13100"
                     /old_locus_tag="BSU13100"
                     /function="16.8: Protect"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:10735877, 10931887, 15096624, 28001372"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10735877, 10931887,
                     15096624, 28001372; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="guanidinium efflux transporter subunit"
                     /protein_id="NP_389193.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13100"
                     /db_xref="EnsemblGenomes-Tr:CAB13167"
                     /db_xref="GOA:P49857"
                     /db_xref="InterPro:IPR000390"
                     /db_xref="SubtiList:BG11423"
                     /db_xref="UniProtKB/Swiss-Prot:P49857"
                     /translation="MLHWISLLCAGCLEMAGVALMNQYAKEKSVKWVLLIIVGFAASF
                     SLLSYAMETTPMGTAYAVWTGIGTAGGALIGILFYKEQKDAKRIFFIALILCSAVGLK
                     ILS*"
     gene            1324612..1324929
                     /gene="gdnD"
                     /locus_tag="BSU_13100"
                     /old_locus_tag="BSU13100"
     promotor_-35    1324929..1324932
                     /Source="Nicolas_upshift_promotors"
                     /id="U1057"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.998001998001998"
                     /xcortree=2582
                     /SigmaFactorBS="tcagcagttggtttaaaaattctgtcataAATTgatttttat
                     caaatcTTCAGTATAATGGATAAATAgtttagacttacaaagataagagggattattc
                     a"
                     /listShort="purU, NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1324948..1324967
                     /Source="Nicolas_upshift_promotors"
                     /id="U1057"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.998001998001998"
                     /xcortree=2582
                     /SigmaFactorBS="tcagcagttggtttaaaaattctgtcataAATTgatttttat
                     caaatcTTCAGTATAATGGATAAATAgtttagacttacaaagataagagggattattc
                     a"
                     /listShort="purU, NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1324960
                     /Source="Nicolas_upshifts"
                     /id="U1057"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.647352647352647"
                     /psig="0.998001998001998"
                     /xcortree=2582
                     /SigmaFactorBS="tcagcagttggtttaaaaattctgtcataAATTgatttttat
                     caaatcTTCAGTATAATGGATAAATAgtttagacttacaaagataagagggattattc
                     a"
                     /listShort="purU, NA, proB, proA"
                     /GFF_Attribute="listLong"
     CDS             1325000..1325902
                     /gene="purU"
                     /locus_tag="BSU_13110"
                     /old_locus_tag="BSU13110"
                     /EC_number="3.5.1.10"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 8226647, 24108189; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate hydrolase"
                     /protein_id="NP_389194.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13110"
                     /db_xref="EnsemblGenomes-Tr:CAB13168"
                     /db_xref="GOA:O34990"
                     /db_xref="InterPro:IPR002376"
                     /db_xref="InterPro:IPR002912"
                     /db_xref="InterPro:IPR004810"
                     /db_xref="InterPro:IPR036477"
                     /db_xref="SubtiList:BG13237"
                     /db_xref="UniProtKB/Swiss-Prot:O34990"
                     /translation="MKSYMTQRLDEYRDGNEDKGRLLVSCPDQPGIVSAVSAFLFEHG
                     ANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFASVAEKFDMTWSLTLASE
                     LKRVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEEARELVERLNIPFHYMKAN
                     KDIRAEVEKKQLELLEQYDVDVIVLARYMQILTPDFVSAHPNRIINIHHSFLPAFIGA
                     NPYKRAYERGVKLIGATSHYVTNDLDEGPIIEQDIERVDHRDNAEALKNIGRTIERSV
                     LARAVKWHLEDRVIVHENKTIVFN*"
     gene            1325000..1325902
                     /gene="purU"
                     /locus_tag="BSU_13110"
                     /old_locus_tag="BSU13110"
     downshifts      1325893
                     /Source="Nicolas_upshifts"
                     /id="D714"
                     /incds=0
                     /nref=91
                     /ntot=226
                     /MaxReadThrough="3.55628"
                     /MaxDrop="5.02155"
                     /score="16.8011006"
                     /energy="-13.1"
                     /TU="U1057"
                     /idTUdmin="U1056"
                     /TUdmin=945
                     /isTUend="FALSE"
     promotor_-35    1325949..1325955
                     /Source="Nicolas_upshift_promotors"
                     /id="U1058"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.482517482517482"
                     /psig="0.998001998001998"
                     /xcortree=3136
                     /SigmaFactorBS="agactgcaagaggcccgcgcaatgcgggctatttttgatgac
                     aaaaaaCCTTGACaagtgtcttttttCTTTGCATAATATAAAAAAAtcattgagcgtt
                     g"
                     /listShort="NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1325961
                     /Source="Nicolas_upshifts"
                     /id="U1058"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.482517482517482"
                     /psig="0.998001998001998"
                     /xcortree=3136
                     /SigmaFactorBS="agactgcaagaggcccgcgcaatgcgggctatttttgatgac
                     aaaaaaCCTTGACaagtgtcttttttCTTTGCATAATATAAAAAAAtcattgagcgtt
                     g"
                     /listShort="NA, proB, proA"
                     /GFF_Attribute="listLong"
     promotor_-10    1325969..1325988
                     /Source="Nicolas_upshift_promotors"
                     /id="U1058"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.482517482517482"
                     /psig="0.998001998001998"
                     /xcortree=3136
                     /SigmaFactorBS="agactgcaagaggcccgcgcaatgcgggctatttttgatgac
                     aaaaaaCCTTGACaagtgtcttttttCTTTGCATAATATAAAAAAAtcattgagcgtt
                     g"
                     /listShort="NA, proB, proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     misc_RNA        1325990..1326200
                     /gene="pswB"
                     /locus_tag="BSU_misc_RNA_17"
                     /product="T-box riboswitch specific of proline tRNA"
                     /experiment="publication(s) with functional evidences,
                     PMID:11917026, 12749771, 19932103, 21233158"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11917026, 12749771,
                     19932103, 21233158; Product type n: RNA"
                     /function="16.3: Control"
     gene            1325990..1326200
                     /gene="pswB"
                     /locus_tag="BSU_misc_RNA_17"
     downshifts      1326158
                     /Source="Nicolas_upshifts"
                     /id="D715"
                     /incds=0
                     /nref=4
                     /ntot=52
                     /MaxReadThrough="6.91996"
                     /MaxDrop="3.8361"
                     /score="29.5878921"
                     /energy="-17.6"
                     /TU="U1057,U1058"
                     /idTUdmin="U1056"
                     /TUdmin=1210
                     /isTUend="FALSE"
     CDS             1326253..1327350
                     /gene="proB"
                     /locus_tag="BSU_13120"
                     /old_locus_tag="BSU13120"
                     /EC_number="2.7.2.11"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16958849, 8083159, 21233158, 21784929"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16958849, 8083159,
                     21233158, 21784929; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="NP_389195.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13120"
                     /db_xref="EnsemblGenomes-Tr:CAB13169"
                     /db_xref="GOA:P39820"
                     /db_xref="InterPro:IPR001048"
                     /db_xref="InterPro:IPR001057"
                     /db_xref="InterPro:IPR002478"
                     /db_xref="InterPro:IPR005715"
                     /db_xref="InterPro:IPR011529"
                     /db_xref="InterPro:IPR015947"
                     /db_xref="InterPro:IPR019797"
                     /db_xref="InterPro:IPR036393"
                     /db_xref="InterPro:IPR036974"
                     /db_xref="SubtiList:BG10963"
                     /db_xref="UniProtKB/Swiss-Prot:P39820"
                     /translation="MKKQRIVVKIGSSSLTNSKGSIDEAKIREHVQAISVLKKAGHEM
                     ILITSGAVAAGFSSLGYPSRPVTIKGKQAAAAVGQTLLMQQYMNQFKQYSLTPGQILL
                     TRNDFSKRERYRNAYATIMELLERGVIPIINENDSTSVEELTFGDNDMLSALVSGLIH
                     ADQLMILTDINGLYDANPNENPEAKRFDYLPEITPELLGYAGSAGSKVGTGGMKSKLL
                     ATQTALSLGVKVFIGTGSGEQKLADILDGRGDGTYIGDKELSSVNNTRQWIQFHSPIS
                     GEIIIDAGAEEAMIHNGSSLLPAGVVGVNGSFPKGAVVEVRGPGGVIGKGQTHYSSEE
                     IMEAKGKRSDELDFEKTFEVIHRNDWVNVKD*"
     gene            1326253..1327350
                     /gene="proB"
                     /locus_tag="BSU_13120"
                     /old_locus_tag="BSU13120"
     promotor_-35    1326440..1326442
                     /Source="Nicolas_upshift_promotors"
                     /id="U1059"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.365634365634366"
                     /psig="0.206793206793207"
                     /xcortree=1776
                     /SigmaFactorBS="gattctgattacctcgggtgccgtagcggcggggttttccag
                     cctcggttatccatCCCgTCCCGttaccatcaaaggaaaacaggcggcggccgcggtc
                     g"
                     /listShort="proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1326444..1326448
                     /Source="Nicolas_upshift_promotors"
                     /id="U1059"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.365634365634366"
                     /psig="0.206793206793207"
                     /xcortree=1776
                     /SigmaFactorBS="gattctgattacctcgggtgccgtagcggcggggttttccag
                     cctcggttatccatCCCgTCCCGttaccatcaaaggaaaacaggcggcggccgcggtc
                     g"
                     /listShort="proA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1326444
                     /Source="Nicolas_upshifts"
                     /id="U1059"
                     /multdbtbs="-"
                     /comp="M20"
                     /sig="Sig-"
                     /pcomp="0.365634365634366"
                     /psig="0.206793206793207"
                     /xcortree=1776
                     /SigmaFactorBS="gattctgattacctcgggtgccgtagcggcggggttttccag
                     cctcggttatccatCCCgTCCCGttaccatcaaaggaaaacaggcggcggccgcggtc
                     g"
                     /listShort="proA"
                     /GFF_Attribute="listLong"
     CDS             1327362..1328609
                     /gene="proA"
                     /locus_tag="BSU_13130"
                     /old_locus_tag="BSU13130"
                     /EC_number="1.2.1.41"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:16958849, 8083159, 21784929, 22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16958849, 8083159,
                     21784929, 22720735; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl phosphate reductase"
                     /protein_id="NP_389196.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13130"
                     /db_xref="EnsemblGenomes-Tr:CAB13170"
                     /db_xref="GOA:P39821"
                     /db_xref="InterPro:IPR000965"
                     /db_xref="InterPro:IPR012134"
                     /db_xref="InterPro:IPR015590"
                     /db_xref="InterPro:IPR016161"
                     /db_xref="InterPro:IPR016162"
                     /db_xref="InterPro:IPR020593"
                     /db_xref="SubtiList:BG10964"
                     /db_xref="UniProtKB/Swiss-Prot:P39821"
                     /translation="MSEVSVKAKLAKEAAAEMIMKTTAEKDEALSLIANGLRKELDFL
                     LAENAKDIVNGKENGLTPDIIDRLSLDEKRIRDIADAVELLIDLADPIGDSLETIEKE
                     NGLFIEKIRVPLGVVGMIYEARPNVTVDAATLCLKTGNAVVLRGSSSAIHSNKALVSV
                     IYRALEQSALPIHAVQLIEDTSRETAKELFTLNDGLDVLIPRGGKKLIDLVVRESTVP
                     VLETGAGNCHIFIDETAKPQMAEKVVVNAKTQRPSVCNAIESLLIHKAWARQHGKELL
                     DQLENAGVEIRGDELVCELHPSSKQASKEDWETEFLAPVLSVKTVENVQEAVKHIQQY
                     GTNHSEAILTENDKNAVYFQTAVDAAAVYHNASTRFTDGFEFGYGAEIGISTQKLHAR
                     GPMGLPALTSTKYIIKGTGQIRE*"
     gene            1327362..1328609
                     /gene="proA"
                     /locus_tag="BSU_13130"
                     /old_locus_tag="BSU13130"
     downshifts      1328600
                     /Source="Nicolas_upshifts"
                     /id="D716"
                     /incds=0
                     /nref=120
                     /ntot=228
                     /MaxReadThrough="4.1607"
                     /MaxDrop="6.017"
                     /score="11.118012"
                     /energy="-11"
                     /TU="U1058"
                     /idTUdmin="U1059"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1328671..1328678
                     /Source="Nicolas_upshift_promotors"
                     /id="U1060"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig=1
                     /xcortree=3016
                     /SigmaFactorBS="ttacgagataagcttttttatacgcgaaaAATTGACAtttca
                     aatttaattGTGTACAATTTAATTGTATAaaatatattgggggaatgaaaaatgagtc
                     a"
                     /listShort="ohrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1328693..1328712
                     /Source="Nicolas_upshift_promotors"
                     /id="U1060"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig=1
                     /xcortree=3016
                     /SigmaFactorBS="ttacgagataagcttttttatacgcgaaaAATTGACAtttca
                     aatttaattGTGTACAATTTAATTGTATAaaatatattgggggaatgaaaaatgagtc
                     a"
                     /listShort="ohrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1328702
                     /Source="Nicolas_upshifts"
                     /id="U1060"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.947052947052947"
                     /psig=1
                     /xcortree=3016
                     /SigmaFactorBS="ttacgagataagcttttttatacgcgaaaAATTGACAtttca
                     aatttaattGTGTACAATTTAATTGTATAaaatatattgggggaatgaaaaatgagtc
                     a"
                     /listShort="ohrA"
                     /GFF_Attribute="listLong"
     CDS             1328735..1329160
                     /gene="ohrA"
                     /locus_tag="BSU_13140"
                     /old_locus_tag="BSU13140"
                     /EC_number="1.11.1.15"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:11418552, 17502599, 21749987, 24184231"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11418552, 17502599,
                     21749987, 24184231; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="NP_389197.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13140"
                     /db_xref="EnsemblGenomes-Tr:CAB13171"
                     /db_xref="GOA:O34762"
                     /db_xref="InterPro:IPR003718"
                     /db_xref="InterPro:IPR015946"
                     /db_xref="InterPro:IPR019953"
                     /db_xref="InterPro:IPR036102"
                     /db_xref="SubtiList:BG13238"
                     /db_xref="UniProtKB/Swiss-Prot:O34762"
                     /translation="MSQPLFTATVSAVGGREGKVISSDRVLELDVAMPGTPRAKKLEK
                     ATNPEQLFAAGYAACFDSALQLVARTERVKVETEVTANVSLLKDEADQGYKLGVTLQV
                     KGEGVSASELEALVKKAHGVCPYSKATSGNIDVTLEVAE*"
     gene            1328735..1329160
                     /gene="ohrA"
                     /locus_tag="BSU_13140"
                     /old_locus_tag="BSU13140"
     downshifts      1329149
                     /Source="Nicolas_upshifts"
                     /id="D717"
                     /incds=0
                     /nref=57
                     /ntot=174
                     /MaxReadThrough="0.0429100000000009"
                     /MaxDrop="3.90314"
                     /score="30.9245751"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U1060"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(1329191..1329634)
                     /gene="ohrR"
                     /locus_tag="BSU_13150"
                     /old_locus_tag="BSU13150"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11983871, 17502599, 18363800, 20094649, 21749987,
                     24184231"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11983871, 17502599,
                     18363800, 20094649, 21749987, 24184231; Product type r :
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator sensing organic
                     peroxides"
                     /protein_id="NP_389198.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13150"
                     /db_xref="EnsemblGenomes-Tr:CAB13172"
                     /db_xref="GOA:O34777"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="PDB:1Z91"
                     /db_xref="PDB:1Z9C"
                     /db_xref="SubtiList:BG13239"
                     /db_xref="UniProtKB/Swiss-Prot:O34777"
                     /translation="MENKFDHMKLENQLCFLLYASSREMTKQYKPLLDKLNITYPQYL
                     ALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTE
                     DGALLKEKAVDIPGTILGLSKQSGEDLKQLKSALYTLLETLHQKN*"
     gene            complement(1329191..1329634)
                     /gene="ohrR"
                     /locus_tag="BSU_13150"
                     /old_locus_tag="BSU13150"
     downshifts      complement(1329225)
                     /Source="Nicolas_upshifts"
                     /id="D718"
                     /incds=0
                     /nref=105
                     /ntot=232
                     /MaxReadThrough="-0.17111"
                     /MaxDrop="4.73026"
                     /score="34.7008532"
                     /energy="-16.6"
                     /TU="NA"
                     /idTUdmin="U1061"
                     /TUdmin=1
                     /isTUend="TRUE"
     promotor_-10    complement(1329661..1329680)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1061"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.672327672327672"
                     /psig=1
                     /xcortree=2020
                     /SigmaFactorBS="tctttttaaacatgctatgtttgccgagaATAGgaaaagtga
                     ggtttTTCAGATACAATAGAATCGAatgacaaaaaagagttggtgaacaaaatggaaa
                     a"
                     /listShort="ohrR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1329667)
                     /Source="Nicolas_upshifts"
                     /id="U1061"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.672327672327672"
                     /psig=1
                     /xcortree=2020
                     /SigmaFactorBS="tctttttaaacatgctatgtttgccgagaATAGgaaaagtga
                     ggtttTTCAGATACAATAGAATCGAatgacaaaaaagagttggtgaacaaaatggaaa
                     a"
                     /listShort="ohrR"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1329695..1329698)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1061"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.672327672327672"
                     /psig=1
                     /xcortree=2020
                     /SigmaFactorBS="tctttttaaacatgctatgtttgccgagaATAGgaaaagtga
                     ggtttTTCAGATACAATAGAATCGAatgacaaaaaagagttggtgaacaaaatggaaa
                     a"
                     /listShort="ohrR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1329716..1329722
                     /Source="Nicolas_upshift_promotors"
                     /id="U1062"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=232
                     /SigmaFactorBS="aacctcacttttcctattctcggcaaacatagcaTGTTTAAa
                     aagatcagaaagGGAAATATAACAACTAGATacaaataaggaggttgggaaatatggc
                     a"
                     /listShort="ohrB, ykzN, S468"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1329736..1329754
                     /Source="Nicolas_upshift_promotors"
                     /id="U1062"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=232
                     /SigmaFactorBS="aacctcacttttcctattctcggcaaacatagcaTGTTTAAa
                     aagatcagaaagGGAAATATAACAACTAGATacaaataaggaggttgggaaatatggc
                     a"
                     /listShort="ohrB, ykzN, S468"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1329742
                     /Source="Nicolas_upshifts"
                     /id="U1062"
                     /multdbtbs="SigB"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=232
                     /SigmaFactorBS="aacctcacttttcctattctcggcaaacatagcaTGTTTAAa
                     aagatcagaaagGGAAATATAACAACTAGATacaaataaggaggttgggaaatatggc
                     a"
                     /listShort="ohrB, ykzN, S468"
                     /GFF_Attribute="listLong"
     CDS             1329777..1330187
                     /gene="ohrB"
                     /locus_tag="BSU_13160"
                     /old_locus_tag="BSU13160"
                     /EC_number="1.11.1.15"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9696771, 11418552, 18084074"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9696771, 11418552,
                     18084074; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance reductase B"
                     /protein_id="NP_389199.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13160"
                     /db_xref="EnsemblGenomes-Tr:CAB13173"
                     /db_xref="GOA:P80242"
                     /db_xref="InterPro:IPR003718"
                     /db_xref="InterPro:IPR015946"
                     /db_xref="InterPro:IPR019953"
                     /db_xref="InterPro:IPR036102"
                     /db_xref="PDB:2BJO"
                     /db_xref="SubtiList:BG19021"
                     /db_xref="UniProtKB/Swiss-Prot:P80242"
                     /translation="MALFTAKVTARGGRAGHITSDDGVLDFDIVMPNAKKEGQTGTNP
                     EQLFAAGYAACFGGALEHVAKEQNIEIDSEIEGQVSLMKDESDGGFKIGVTLVVNTKD
                     LDREKAQELVNAAHEFCPYSKATRGNVDVKLELK*"
     gene            1329777..1330187
                     /gene="ohrB"
                     /locus_tag="BSU_13160"
                     /old_locus_tag="BSU13160"
     downshifts      1330165
                     /Source="Nicolas_upshifts"
                     /id="D719"
                     /incds=0
                     /nref=7
                     /ntot=145
                     /MaxReadThrough="8.17185"
                     /MaxDrop="4.0663"
                     /score="17.6512157"
                     /energy="-12.1"
                     /TU="U1062"
                     /idTUdmin="U1062"
                     /TUdmin="-855"
                     /isTUend="FALSE"
     CDS             1330214..1330384
                     /gene="ykzN"
                     /locus_tag="BSU_13169"
                     /old_locus_tag="BSU13169"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_003097717.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13169"
                     /db_xref="EnsemblGenomes-Tr:CAX52607"
                     /db_xref="UniProtKB/Swiss-Prot:C0H400"
                     /translation="MFFGVGHAGRAQIYDKTSEKRLKHAFKPKVTDEAGGWHGVCRAE
                     LRVYAVLYLHRA*"
     gene            1330214..1330384
                     /gene="ykzN"
                     /locus_tag="BSU_13169"
                     /old_locus_tag="BSU13169"
     S_feature       1330385..1331062
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1382628_1383305"
                     /HighExp="Etha, Salt, M9-stat, Sw, B60, LPhT, B36, Heat,
                     Gly, BC"
                     /AntisenseName="guaD"
                     /AntisenseCor="-5.7732597431508298E-2"
                     /AntisenseRegPval="-0.5"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S468"
     CDS             complement(1330434..1330904)
                     /gene="guaN"
                     /locus_tag="BSU_13170"
                     /old_locus_tag="BSU13170"
                     /EC_number="3.5.4.3"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:11101664, 15180998"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11101664, 15180998;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="guanine deaminase"
                     /protein_id="NP_389200.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13170"
                     /db_xref="EnsemblGenomes-Tr:CAB13174"
                     /db_xref="GOA:O34598"
                     /db_xref="InterPro:IPR002125"
                     /db_xref="InterPro:IPR016192"
                     /db_xref="InterPro:IPR016193"
                     /db_xref="PDB:1TIY"
                     /db_xref="PDB:1WKQ"
                     /db_xref="SubtiList:BG13240"
                     /db_xref="UniProtKB/Swiss-Prot:O34598"
                     /translation="MNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNV
                     TTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAA
                     EHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQVTLTEHLSPFQAWRNFANKKEY*"
     gene            complement(1330434..1330904)
                     /gene="guaN"
                     /locus_tag="BSU_13170"
                     /old_locus_tag="BSU13170"
     downshifts      complement(1330458)
                     /Source="Nicolas_upshifts"
                     /id="D720"
                     /incds=0
                     /nref=25
                     /ntot=112
                     /MaxReadThrough="0.698199999999999"
                     /MaxDrop="4.30578"
                     /score="-6.41557266"
                     /energy="-13.5"
                     /TU="NA"
                     /idTUdmin="U1063"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(1330926..1330945)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1063"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.434565434565435"
                     /psig="0.933066933066933"
                     /xcortree=790
                     /SigmaFactorBS="atcccccaaatactttgtttattttgcacttttttaagAATG
                     ttctttgcattctttTCGGCTATACTAATAACACTctattgacaggagggattgggat
                     g"
                     /listShort="guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1330942)
                     /Source="Nicolas_upshifts"
                     /id="U1063"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.434565434565435"
                     /psig="0.933066933066933"
                     /xcortree=790
                     /SigmaFactorBS="atcccccaaatactttgtttattttgcacttttttaagAATG
                     ttctttgcattctttTCGGCTATACTAATAACACTctattgacaggagggattgggat
                     g"
                     /listShort="guaD"
                     /GFF_Attribute="listLong"
     S_feature       complement(1330944..1331051)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1383187_1383294_c"
                     /HighExp="BMM, MG 10, MG 15, MG 5, MG t5, GM 25, B36, Gly,
                     B60, GM 90"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA"
                     /TUshortPSig="0.044, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S469"
     promotor_-35    complement(1330961..1330964)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1063"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.434565434565435"
                     /psig="0.933066933066933"
                     /xcortree=790
                     /SigmaFactorBS="atcccccaaatactttgtttattttgcacttttttaagAATG
                     ttctttgcattctttTCGGCTATACTAATAACACTctattgacaggagggattgggat
                     g"
                     /listShort="guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     downshifts      1331020
                     /Source="Nicolas_upshifts"
                     /id="D721"
                     /incds=0
                     /nref=9
                     /ntot=34
                     /MaxReadThrough="0.95942"
                     /MaxDrop="5.95076"
                     /score="15.2916843"
                     /energy="-11.5"
                     /TU="NA"
                     /idTUdmin="U1062"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1331077..1333365)
                     /gene="metE"
                     /locus_tag="BSU_13180"
                     /old_locus_tag="BSU13180"
                     /EC_number="2.1.1.14"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:8755891, 10094622, 12910260, 16086852, 16194229,
                     17012790, 17611193, 21749987, 22938038, 24313874"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 8755891, 10094622,
                     12910260, 16086852, 16194229, 17012790, 17611193,
                     21749987, 22938038, 24313874; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-independent methionine synthase"
                     /protein_id="NP_389201.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13180"
                     /db_xref="EnsemblGenomes-Tr:CAB13175"
                     /db_xref="GOA:P80877"
                     /db_xref="InterPro:IPR002629"
                     /db_xref="InterPro:IPR006276"
                     /db_xref="InterPro:IPR013215"
                     /db_xref="SubtiList:BG12616"
                     /db_xref="UniProtKB/Swiss-Prot:P80877"
                     /translation="MTTIKTSNLGFPRIGLNREWKKALEAYWKGSTDKDTFLKQIDEL
                     FLSAVKTQIDQQIDVVPVSDFTQYDHVLDTAVSFNWIPKRFRHLTDATDTYFAIARGI
                     KDAVSSEMTKWFNTNYHYIVPEYDESIEFRLTRNKQLEDYRRIKQEYGVETKPVIVGP
                     YTFVTLAKGYEPSEAKAIQKRLVPLYVQLLKELEEEGVKWVQIDEPALVTASSEDVRG
                     AKELFESITSELSSLNVLLQTYFDSVDAYEELISYPVQGIGLDFVHDKGRNLEQLKTH
                     GFPTDKVLAAGVIDGRNIWKADLEERLDAVLDILSIAKVDELWIQPSSSLLHVPVAKH
                     PDEHLEKDLLNGLSYAKEKLAELTALKEGLVSGKAAISEEIQQAKADIQALKQFATGA
                     NSEQKKELEQLTDKDFKRPIPFEERLALQNESLGLPLLPTTTIGSFPQSAEVRSARQK
                     WRKAEWSDEQYQNFINAETKRWIDIQEELELDVLVHGEFERTDMVEYFGEKLAGFAFT
                     KYAWVQSYGSRCVRPPVIYGDVEFIEPMTVKDTVYAQSLTSKHVKGMLTGPVTILNWS
                     FPRNDISRKEIAFQIGLALRKEVKALEDAGIQIIQVDEPALREGLPLKTRDWDEYLTW
                     AAEAFRLTTSSVKNETQIHTHMCYSNFEDIVDTINDLDADVITIEHSRSHGGFLDYLK
                     NHPYLKGLGLGVYDIHSPRVPSTEEMYNIIVDALAVCPTDRFWVNPDCGLKTRQQEET
                     VAALKNMVEAAKQARAQQTQLV*"
     gene            complement(1331077..1333365)
                     /gene="metE"
                     /locus_tag="BSU_13180"
                     /old_locus_tag="BSU13180"
     downshifts      complement(1331096)
                     /Source="Nicolas_upshifts"
                     /id="D722"
                     /incds=0
                     /nref=212
                     /ntot=239
                     /MaxReadThrough="5.25958"
                     /MaxDrop="7.50935"
                     /score="29.3354648"
                     /energy="-11.5"
                     /TU="U1064,U1065"
                     /idTUdmin="U1063"
                     /TUdmin="-638"
                     /isTUend="FALSE"
     S_feature       complement(1333366..1333428)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1385609_1385671_c"
                     /HighExp="MG 15, MG 5, MG t5, BMM, T-1.40H, MG 25, MG 10,
                     GM 25, Mal, Etha"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="Sig-, SigA, SigA"
                     /TUshortPSig="0.044, 1, 0.587"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S470"
     promotor_no_box complement(1333388..1333488)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1064"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.332667332667333"
                     /psig="0.043956043956044"
                     /xcortree=3023
                     /SigmaFactorBS="agtgttttacgtagaaaagcctctttctctcatgggaaagag
                     gctttttgttgtgagaaaacctcttagcagcctgtatccgcgggtgaaagagagtgtt
                     t"
                     /listShort="S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(1333428)
                     /Source="Nicolas_upshifts"
                     /id="U1064"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.332667332667333"
                     /psig="0.043956043956044"
                     /xcortree=3023
                     /SigmaFactorBS="agtgttttacgtagaaaagcctctttctctcatgggaaagag
                     gctttttgttgtgagaaaacctcttagcagcctgtatccgcgggtgaaagagagtgtt
                     t"
                     /listShort="S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
     misc_RNA        complement(1333493..1333648)
                     /gene="mswB"
                     /locus_tag="BSU_misc_RNA_18"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 17381305, 18039762,
                     22543867"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 17381305, 18039762, 22543867; Product type n :
                     RNA"
                     /function="16.3: Control"
     gene            complement(1333493..1333648)
                     /gene="mswB"
                     /locus_tag="BSU_misc_RNA_18"
     downshifts      complement(1333494)
                     /Source="Nicolas_upshifts"
                     /id="D723"
                     /incds=0
                     /nref=55
                     /ntot=106
                     /MaxReadThrough="8.12248"
                     /MaxDrop="6.4813"
                     /score="24.0596293"
                     /energy="-16.2"
                     /TU="U1065,U1066"
                     /idTUdmin="U1066"
                     /TUdmin="-308"
                     /isTUend="FALSE"
     promotor_-10    complement(1333681..1333700)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1065"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2888
                     /SigmaFactorBS="acatcatgtaaataaaaatttcaaattctaTGTTGACAatga
                     atttgaattacTGTTAAGATTACCAACAAATgattcaacttttcaaaaaattaataac
                     a"
                     /listShort="NA, S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1333693)
                     /Source="Nicolas_upshifts"
                     /id="U1065"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2888
                     /SigmaFactorBS="acatcatgtaaataaaaatttcaaattctaTGTTGACAatga
                     atttgaattacTGTTAAGATTACCAACAAATgattcaacttttcaaaaaattaataac
                     a"
                     /listShort="NA, S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
     S_feature       complement(1333695..1333780)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1385938_1386023_c"
                     /HighExp="BT, BC, B36, M9-stat, T5.0H, S3, S6, T4.0H, S5,
                     T0.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.587"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S471"
     promotor_-35    complement(1333716..1333723)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1065"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.992007992007992"
                     /psig=1
                     /xcortree=2888
                     /SigmaFactorBS="acatcatgtaaataaaaatttcaaattctaTGTTGACAatga
                     atttgaattacTGTTAAGATTACCAACAAATgattcaacttttcaaaaaattaataac
                     a"
                     /listShort="NA, S470, metE, S469, guaD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1333781..1334740)
                     /gene="ispA"
                     /locus_tag="BSU_13190"
                     /old_locus_tag="BSU13190"
                     /EC_number="3.4.21.-"
                     /function="16.6: Maintain"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:3087947, 14680823, 23569278"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3087947, 14680823,
                     23569278; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular serine protease"
                     /protein_id="NP_389202.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13190"
                     /db_xref="EnsemblGenomes-Tr:CAB13176"
                     /db_xref="GOA:P11018"
                     /db_xref="InterPro:IPR000209"
                     /db_xref="InterPro:IPR015500"
                     /db_xref="InterPro:IPR022398"
                     /db_xref="InterPro:IPR023827"
                     /db_xref="InterPro:IPR023828"
                     /db_xref="InterPro:IPR034202"
                     /db_xref="InterPro:IPR036852"
                     /db_xref="SubtiList:BG10674"
                     /db_xref="UniProtKB/Swiss-Prot:P11018"
                     /translation="MNGEIRLIPYVTNEQIMDVNELPEGIKVIKAPEMWAKGVKGKNI
                     KVAVLDTGCDTSHPDLKNQIIGGKNFTDDDGGKEDAISDYNGHGTHVAGTIAANDSNG
                     GIAGVAPEASLLIVKVLGGENGSGQYEWIINGINYAVEQKVDIISMSLGGPSDVPELK
                     EAVKNAVKNGVLVVCAAGNEGDGDERTEELSYPAAYNEVIAVGSVSVARELSEFSNAN
                     KEIDLVAPGENILSTLPNKKYGKLTGTSMAAPHVSGALALIKSYEEESFQRKLSESEV
                     FAQLIRRTLPLDIAKTLAGNGFLYLTAPDELAEKAEQSHLLTL*"
     gene            complement(1333781..1334740)
                     /gene="ispA"
                     /locus_tag="BSU_13190"
                     /old_locus_tag="BSU13190"
     S_feature       complement(1334741..1334792)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1386984_1387035_c"
                     /HighExp="BT, B36, BC, T5.0H, M9-stat, T0.30H, T3.30H,
                     T3.0H, T4.0H, S6"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.587"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S472"
     promotor_-10    complement(1334785..1334804)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1066"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.358641358641359"
                     /psig="0.587412587412587"
                     /xcortree=465
                     /SigmaFactorBS="tgtatcctattttttcaaaatgcttcaaatggcTCTGTCCga
                     gcgcttgctttTTTCATATAATATGAGGCAAcacccttgaatccacttgcaagcataa
                     a"
                     /listShort="S472, ispA, S471, NA, S470, metE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1334797)
                     /Source="Nicolas_upshifts"
                     /id="U1066"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.358641358641359"
                     /psig="0.587412587412587"
                     /xcortree=465
                     /SigmaFactorBS="tgtatcctattttttcaaaatgcttcaaatggcTCTGTCCga
                     gcgcttgctttTTTCATATAATATGAGGCAAcacccttgaatccacttgcaagcataa
                     a"
                     /listShort="S472, ispA, S471, NA, S470, metE"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1334818..1334824)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1066"
                     /multdbtbs="SigA"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.358641358641359"
                     /psig="0.587412587412587"
                     /xcortree=465
                     /SigmaFactorBS="tgtatcctattttttcaaaatgcttcaaatggcTCTGTCCga
                     gcgcttgctttTTTCATATAATATGAGGCAAcacccttgaatccacttgcaagcataa
                     a"
                     /listShort="S472, ispA, S471, NA, S470, metE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1334909..1334912
                     /Source="Nicolas_upshift_promotors"
                     /id="U1067"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.3996003996004"
                     /psig=1
                     /xcortree=2359
                     /SigmaFactorBS="gaattagtaatcttcaaaatattggatggcttcaacatgtat
                     gaCTGGgattcaactgtaagtCAAGTTATAATAGTGTTGGGgaaaggagcagtgtcat
                     g"
                     /listShort="rsbRB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1334925
                     /Source="Nicolas_upshifts"
                     /id="U1067"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.3996003996004"
                     /psig=1
                     /xcortree=2359
                     /SigmaFactorBS="gaattagtaatcttcaaaatattggatggcttcaacatgtat
                     gaCTGGgattcaactgtaagtCAAGTTATAATAGTGTTGGGgaaaggagcagtgtcat
                     g"
                     /listShort="rsbRB"
                     /GFF_Attribute="listLong"
     promotor_-10    1334928..1334947
                     /Source="Nicolas_upshift_promotors"
                     /id="U1067"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.3996003996004"
                     /psig=1
                     /xcortree=2359
                     /SigmaFactorBS="gaattagtaatcttcaaaatattggatggcttcaacatgtat
                     gaCTGGgattcaactgtaagtCAAGTTATAATAGTGTTGGGgaaaggagcagtgtcat
                     g"
                     /listShort="rsbRB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1334963..1335796
                     /gene="rsbRB"
                     /locus_tag="BSU_13200"
                     /old_locus_tag="BSU13200"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15312768, 15583165, 17158665"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15312768, 15583165,
                     17158665; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="component of the anxiosome (stressosome)"
                     /protein_id="NP_389203.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13200"
                     /db_xref="EnsemblGenomes-Tr:CAB13177"
                     /db_xref="InterPro:IPR002645"
                     /db_xref="InterPro:IPR036513"
                     /db_xref="SubtiList:BG12609"
                     /db_xref="UniProtKB/Swiss-Prot:O34860"
                     /translation="MKLNEKLYAFFSEHVEQMAEEWIETMEESDPNSLYALHNATVTE
                     ELKEQDREFYRHLNYMYVLPEKQFLEEFQEWVIELTNDQKHLDTPVQYVIREFMRNRR
                     LYTKYFEKFAEENESAFEPGEKQKWADLIVKVFDFTIYTFVDHAEMNAKQQLNAQREM
                     ILELSSPVITLSKSTALLPLVGDIDTERAKFILENTLQACAKRRVEHLLIDLSGVVVV
                     DTMVAHQIFKLIEALNLIGVRSTLSGIRPEIAQTAVQLGIDFSNITIKTNLAQALNYH
                     Q*"
     gene            1334963..1335796
                     /gene="rsbRB"
                     /locus_tag="BSU_13200"
                     /old_locus_tag="BSU13200"
     downshifts      1335772
                     /Source="Nicolas_upshifts"
                     /id="D724"
                     /incds=0
                     /nref=219
                     /ntot=254
                     /MaxReadThrough="3.01586"
                     /MaxDrop="6.07238"
                     /score="22.2655638"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U1067"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1335827..1336591)
                     /gene="thiX"
                     /locus_tag="BSU_13210"
                     /old_locus_tag="BSU13210"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16291685, 16356850, 16850406, 18931129"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16291685,
                     16356850, 16850406, 18931129; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine transporter, transmembrane T component"
                     /protein_id="NP_389204.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13210"
                     /db_xref="EnsemblGenomes-Tr:CAB13178"
                     /db_xref="GOA:O34572"
                     /db_xref="InterPro:IPR003339"
                     /db_xref="SubtiList:BG13248"
                     /db_xref="UniProtKB/Swiss-Prot:O34572"
                     /translation="MKQPLHLINPTVKAAAVFCCVVMLSFIYNPYTPACFYIIIVAGV
                     LLAAGIPLKKWLLFTIPFLILAFGCVWTAAVFGKVPTTPDNFLFQAGPISINSDNVSV
                     GISLGFRILCFSALSMMFVFTTDPILFMLSLVQQCRLSPKLAYGVIAGFRFLPLLKDE
                     VQLIQQAHKIRGGAAESGIINKISALKRYTIPLLASAIRKAERTALAMESKGFTGSRN
                     RTYYRTLSVNRRDWVFFCLVLLLFAGSFLVSLCFAS*"
     gene            complement(1335827..1336591)
                     /gene="thiX"
                     /locus_tag="BSU_13210"
                     /old_locus_tag="BSU13210"
     downshifts      complement(1335848)
                     /Source="Nicolas_upshifts"
                     /id="D725"
                     /incds=0
                     /nref=143
                     /ntot=164
                     /MaxReadThrough="0.824010000000001"
                     /MaxDrop="6.67697"
                     /score="34.7739353"
                     /energy="-12.1"
                     /TU="NA"
                     /idTUdmin="U1069"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1336566..1338209)
                     /gene="thiW"
                     /locus_tag="BSU_13220"
                     /old_locus_tag="BSU13220"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16291685, 16356850, 16850406, 18931129"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16291685,
                     16356850, 16850406, 18931129; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter (ATP-binding subunit)"
                     /protein_id="NP_389205.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13220"
                     /db_xref="EnsemblGenomes-Tr:CAB13179"
                     /db_xref="GOA:O34362"
                     /db_xref="InterPro:IPR003439"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR017871"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="SubtiList:BG13249"
                     /db_xref="UniProtKB/Swiss-Prot:O34362"
                     /translation="MQAFDELLTVEQLSFSYEEDEKPVFQDISFELQKGECVLLLGPS
                     GCGKSSLALCLNGLYPEACDGIQSGHVFLFQKPVTDAETSETITQHAGVVFQDPDQQF
                     CMLTVEDEIAFGLENLQIPKEEMTEKINAVLEKLRITHLKEKMISTLSGGQKQKVALA
                     CILAMEPELIILDEPTSLLDPFSAREFVHLMKDLQREKGFSLLVIEHQLDEWAPWIER
                     TIVLDKSGKKALDGLTKNLFQHEAETLKKLGIAIPKVCHLQEKLSMPFTLSKEMLFKE
                     PIPAGHVKKKKAPSGESVLEVSSLSFARGQQAIFKDISFSLREGSLTALVGPNGTGKS
                     TLLSVLASLMKPQSGKILLYDQPLQKYKEKELRKRMGFVFQNPEHQFVTDTVYDELLF
                     GQKANAETEKKAQHLLQRFGLAHLADHHPFAISQGQKRRLSVATMLMHDVKVLLLDEP
                     TFGQDARTAAECMEMIQRIKAEGTAVLMITHDMELVSSYADSVLVLHDTGLAFDGSPA
                     QLFSQETGLVQKAKLTLPLLYEWMAFQEEVRDEATVTSH*"
     gene            complement(1336566..1338209)
                     /gene="thiW"
                     /locus_tag="BSU_13220"
                     /old_locus_tag="BSU13220"
     CDS             complement(1338196..1338795)
                     /gene="thiV"
                     /locus_tag="BSU_13230"
                     /old_locus_tag="BSU13230"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15849754, 16291685, 16356850, 16850406, 27447050,
                     22720735"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15849754, 16291685,
                     16356850, 16850406, 27447050, 22720735; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine transporter, permease component"
                     /protein_id="NP_389206.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13230"
                     /db_xref="EnsemblGenomes-Tr:CAB13180"
                     /db_xref="GOA:O34738"
                     /db_xref="InterPro:IPR017195"
                     /db_xref="PDB:5EDL"
                     /db_xref="SubtiList:BG13250"
                     /db_xref="UniProtKB/Swiss-Prot:O34738"
                     /translation="MKSWKVKEIVIMSVISIVFAVVYLLFTHFGNVLAGMFGPIAYEP
                     IYGIWFIVSVIAAYMIRKPGAALVSEIIAALVECLLGNPSGPMVIVIGIVQGLGAEAV
                     FLATRWKAYSLPVLMLAGMGSSVASFIYDLFVSGYAAYSPGYLLIMLVIRLISGALLA
                     GLLGKAVSDSLAYTGVLNGMALGKELKKKRKRASEHASL*"
     gene            complement(1338196..1338795)
                     /gene="thiV"
                     /locus_tag="BSU_13230"
                     /old_locus_tag="BSU13230"
     CDS             complement(1338797..1339399)
                     /gene="thiU"
                     /locus_tag="BSU_13240"
                     /old_locus_tag="BSU13240"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15451668, 16291685, 16356850, 20471400"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15451668, 16291685,
                     16356850, 20471400; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-binding protein (oxidation stress
                     protein)"
                     /protein_id="NP_389207.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13240"
                     /db_xref="EnsemblGenomes-Tr:CAB13181"
                     /db_xref="GOA:O34911"
                     /db_xref="InterPro:IPR011522"
                     /db_xref="InterPro:IPR015835"
                     /db_xref="InterPro:IPR029756"
                     /db_xref="PDB:1S7H"
                     /db_xref="PDB:1S99"
                     /db_xref="PDB:1SBR"
                     /db_xref="SubtiList:BG13251"
                     /db_xref="UniProtKB/Swiss-Prot:O34911"
                     /translation="MEHICGTSRIAGFRFSLYPMTDDFISVIKSALKKTDTSKVWTKT
                     DHISTVLRGSIDHVFDAAKAIYLHAANSEQHIVMNGTFSIGCPGDTQGDTYLSKGDKR
                     VNEDAVRGLKAEAPCQFALYPMNEPDYMGLIMEAVDIAKAQGTFVQGVHYASELDGDA
                     HDVFSTLEAVFRMAEQQTNHITMTVNLSANSPSRKNRKQG*"
     gene            complement(1338797..1339399)
                     /gene="thiU"
                     /locus_tag="BSU_13240"
                     /old_locus_tag="BSU13240"
     downshifts      complement(1339477)
                     /Source="Nicolas_upshifts"
                     /id="D726"
                     /incds=0
                     /nref=28
                     /ntot=88
                     /MaxReadThrough="7.47395"
                     /MaxDrop="5.73297"
                     /score="19.7469386"
                     /energy="-10.9"
                     /TU="U1069"
                     /idTUdmin="U1069"
                     /TUdmin="-3629"
                     /isTUend="FALSE"
     misc_RNA        complement(1339496..1339608)
                     /gene="tswB"
                     /locus_tag="BSU_misc_RNA_19"
                     /product="thiamine pyrophosphate riboswitch"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11470904, 12410317,
                     15862294, 16728979, 16962976, 17307816, 18179415,
                     18776013; Product type n: RNA"
                     /function="16.3: Control"
     gene            complement(1339496..1339608)
                     /gene="tswB"
                     /locus_tag="BSU_misc_RNA_19"
     promotor_-35    1339609..1339612
                     /Source="Nicolas_upshift_promotors"
                     /id="U1068"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.425574425574426"
                     /psig="0.987012987012987"
                     /xcortree=1848
                     /SigmaFactorBS="tcagccaaaacagcacccctagtgctttccGTATacaatttt
                     ttattttGACATCATAATAGATGATAAgaatcattttgtaaacaacgaaatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1339623..1339642)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1069"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.917082917082917"
                     /psig=1
                     /xcortree=2882
                     /SigmaFactorBS="accatcctctcccgtccctatatgaaaaaaatgatttcgtTG
                     TTTACAaaatgattcttatcATCTATTATGATGTCAAAATaaaaaattgtatacggaa
                     a"
                     /listShort="NA, thiU, thiV, thiW, thiX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    1339628..1339647
                     /Source="Nicolas_upshift_promotors"
                     /id="U1068"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.425574425574426"
                     /psig="0.987012987012987"
                     /xcortree=1848
                     /SigmaFactorBS="tcagccaaaacagcacccctagtgctttccGTATacaatttt
                     ttattttGACATCATAATAGATGATAAgaatcattttgtaaacaacgaaatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1339639
                     /Source="Nicolas_upshifts"
                     /id="U1068"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.425574425574426"
                     /psig="0.987012987012987"
                     /xcortree=1848
                     /SigmaFactorBS="tcagccaaaacagcacccctagtgctttccGTATacaatttt
                     ttattttGACATCATAATAGATGATAAgaatcattttgtaaacaacgaaatcattttt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     upshifts        complement(1339644)
                     /Source="Nicolas_upshifts"
                     /id="U1069"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.917082917082917"
                     /psig=1
                     /xcortree=2882
                     /SigmaFactorBS="accatcctctcccgtccctatatgaaaaaaatgatttcgtTG
                     TTTACAaaatgattcttatcATCTATTATGATGTCAAAATaaaaaattgtatacggaa
                     a"
                     /listShort="NA, thiU, thiV, thiW, thiX"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1339657..1339664)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1069"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.917082917082917"
                     /psig=1
                     /xcortree=2882
                     /SigmaFactorBS="accatcctctcccgtccctatatgaaaaaaatgatttcgtTG
                     TTTACAaaatgattcttatcATCTATTATGATGTCAAAATaaaaaattgtatacggaa
                     a"
                     /listShort="NA, thiU, thiV, thiW, thiX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1339710..1340396
                     /gene="ykoG"
                     /locus_tag="BSU_13250"
                     /old_locus_tag="BSU13250"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295; Product type r:
                     regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator [YkoH]"
                     /protein_id="NP_389208.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13250"
                     /db_xref="EnsemblGenomes-Tr:CAB13182"
                     /db_xref="GOA:O34903"
                     /db_xref="InterPro:IPR001789"
                     /db_xref="InterPro:IPR001867"
                     /db_xref="InterPro:IPR011006"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="SubtiList:BG13252"
                     /db_xref="UniProtKB/Swiss-Prot:O34903"
                     /translation="MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAA
                     EGGYSLVLLDVMLPGLSGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYV
                     TKPFEIEELLARIRAALRQNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPRE
                     FDLLVYMLKHPQQVLTREQILSSVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHT
                     IRGVGYAIKG*"
     gene            1339710..1340396
                     /gene="ykoG"
                     /locus_tag="BSU_13250"
                     /old_locus_tag="BSU13250"
     CDS             1340400..1341764
                     /gene="ykoH"
                     /locus_tag="BSU_13260"
                     /old_locus_tag="BSU13260"
                     /EC_number="2.7.13.3"
                     /function="16.12: Sense"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11717295"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11717295; Product type
                     rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase [YkoG]"
                     /protein_id="NP_389209.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13260"
                     /db_xref="EnsemblGenomes-Tr:CAB13183"
                     /db_xref="GOA:O34638"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003660"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG13253"
                     /db_xref="UniProtKB/Swiss-Prot:O34638"
                     /translation="MKLKTKIHLYTSISLLILLILVHTAVYLIFSSALTSKDAARLAD
                     ETDNIAEALRAAETEGVALQDMLQAYLPANGMVRVVNGDQKAVMTITKEKAYKDFPLS
                     FHSGETADVRKPDGKLFAEAAVPVIWTDGQVVSLQLVERLENTEESLFLLKIILIAAS
                     AAVCIASFFAGSLLARRIINPIRRLMITMKDIQRDKEFKTISLEGQSNDELYQMGLTF
                     NEMAMMLKEHYDKQQQFVQDASHELKTPLTIIESYSSLMKRWGAKKPEVLEESIEAIH
                     SEAVHMKKLTNQLLALAKSHQGLEVDLKTIDLIKAARAVMQTLQSVYQRDILLETDKE
                     SLLVKADEERIKQLLTILLDNAIKYSEKPIEMSAGTRNGRPFLSVRDEGIGIPEEHIP
                     HLFERFYRADEARNRKTGGTGLGLSIAKQIADEHGIELSVKSKPGQGTAVTMQFSEQN
                     GGGR*"
     gene            1340400..1341764
                     /gene="ykoH"
                     /locus_tag="BSU_13260"
                     /old_locus_tag="BSU13260"
     CDS             1341761..1342441
                     /gene="ykoI"
                     /locus_tag="BSU_13270"
                     /old_locus_tag="BSU13270"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 11717295; Product type m :
                     membranecomponent"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved membrane protein of unknown function"
                     /protein_id="NP_389210.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13270"
                     /db_xref="EnsemblGenomes-Tr:CAB13184"
                     /db_xref="GOA:O34551"
                     /db_xref="InterPro:IPR014722"
                     /db_xref="InterPro:IPR025711"
                     /db_xref="SubtiList:BG13254"
                     /db_xref="UniProtKB/Swiss-Prot:O34551"
                     /translation="MTKTIKTVSFAAAAILVVIICTFLIIRQTHENVLSKETVVKKVE
                     ASYEGKVTKATQSKDKKTYDITLENPKGTYFVKADAISADILSMNRVKAVNPSAMTEK
                     EAEHLALERVPGTVKKQTRQSQVATYTIQKEDGKTYEVKVDMQAKTVLSADQISSKDQ
                     QKTPITKKEAKTIAERKTGGTADDADLEESEGTLIFEVDVDLPDNKEATVKINAYTGK
                     VANIVYED*"
     gene            1341761..1342441
                     /gene="ykoI"
                     /locus_tag="BSU_13270"
                     /old_locus_tag="BSU13270"
     promotor_-35    1342470..1342475
                     /Source="Nicolas_upshift_promotors"
                     /id="U1070"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.352647352647353"
                     /psig="0.748251748251748"
                     /xcortree=658
                     /SigmaFactorBS="aagactgacggtttctcatcaaattctcatcttgctCTCGTT
                     ttcctttcatgttgaGTATGTAAACTGTACTCATacaaaacaaaggagggctcacaaa
                     t"
                     /listShort="ykoJ, ykzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1342491..1342509
                     /Source="Nicolas_upshift_promotors"
                     /id="U1070"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.352647352647353"
                     /psig="0.748251748251748"
                     /xcortree=658
                     /SigmaFactorBS="aagactgacggtttctcatcaaattctcatcttgctCTCGTT
                     ttcctttcatgttgaGTATGTAAACTGTACTCATacaaaacaaaggagggctcacaaa
                     t"
                     /listShort="ykoJ, ykzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1342494
                     /Source="Nicolas_upshifts"
                     /id="U1070"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.352647352647353"
                     /psig="0.748251748251748"
                     /xcortree=658
                     /SigmaFactorBS="aagactgacggtttctcatcaaattctcatcttgctCTCGTT
                     ttcctttcatgttgaGTATGTAAACTGTACTCATacaaaacaaaggagggctcacaaa
                     t"
                     /listShort="ykoJ, ykzD"
                     /GFF_Attribute="listLong"
     CDS             1342533..1343045
                     /gene="ykoJ"
                     /locus_tag="BSU_13280"
                     /old_locus_tag="BSU13280"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 17209068; Product type
                     ph: phenotype"
                     /codon_start=1
                     /transl_table=11
                     /product="putative exported protein"
                     /protein_id="NP_389211.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13280"
                     /db_xref="EnsemblGenomes-Tr:CAB13185"
                     /db_xref="InterPro:IPR025711"
                     /db_xref="SubtiList:BG13255"
                     /db_xref="UniProtKB/Swiss-Prot:O35012"
                     /translation="MLKKKWMVGLLAGCLAAGGFSYNAFATENNENRQASSKTDALTE
                     QEAEAIAKTVVDGTVEDIDRDLYNGKEVYEVEIEKEGEDYDVYVDIHTKQALNDPLKE
                     KAEQVAITKEEAEEIALKQTGGTVTESKLDEDDGAYIYEMEIQTKQGTETEFEISAKD
                     GRIIKQEIDD*"
     gene            1342533..1343045
                     /gene="ykoJ"
                     /locus_tag="BSU_13280"
                     /old_locus_tag="BSU13280"
     downshifts      1343031
                     /Source="Nicolas_upshifts"
                     /id="D727"
                     /incds=0
                     /nref=52
                     /ntot=228
                     /MaxReadThrough="3.74302"
                     /MaxDrop="6.03059"
                     /score="28.1760649"
                     /energy="-13.7"
                     /TU="U1070"
                     /idTUdmin="U1070"
                     /TUdmin="-198"
                     /isTUend="FALSE"
     promotor_-35    1343076..1343082
                     /Source="Nicolas_upshift_promotors"
                     /id="U1071"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=922
                     /SigmaFactorBS="gatgactaatcaaaacccccgctgcagcgggggtttttcATG
                     ATAAgaaaccttcttttGGACAATCTAAGtagaaaaggaggcgaaacgcatggaaaag
                     a"
                     /listShort="ykzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1343096..1343107
                     /Source="Nicolas_upshift_promotors"
                     /id="U1071"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=922
                     /SigmaFactorBS="gatgactaatcaaaacccccgctgcagcgggggtttttcATG
                     ATAAgaaaccttcttttGGACAATCTAAGtagaaaaggaggcgaaacgcatggaaaag
                     a"
                     /listShort="ykzD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1343097
                     /Source="Nicolas_upshifts"
                     /id="U1071"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=922
                     /SigmaFactorBS="gatgactaatcaaaacccccgctgcagcgggggtttttcATG
                     ATAAgaaaccttcttttGGACAATCTAAGtagaaaaggaggcgaaacgcatggaaaag
                     a"
                     /listShort="ykzD"
                     /GFF_Attribute="listLong"
     CDS             1343128..1343265
                     /gene="ykzD"
                     /locus_tag="BSU_13290"
                     /old_locus_tag="BSU13290"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389212.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13290"
                     /db_xref="EnsemblGenomes-Tr:CAB13186"
                     /db_xref="InterPro:IPR022608"
                     /db_xref="SubtiList:BG13332"
                     /db_xref="UniProtKB/Swiss-Prot:O34405"
                     /translation="MEKKEEQYINQAEYVPHPTKEGEYALFLHETYHLLSEDDETQTT
                     E*"
     gene            1343128..1343265
                     /gene="ykzD"
                     /locus_tag="BSU_13290"
                     /old_locus_tag="BSU13290"
     downshifts      1343238
                     /Source="Nicolas_upshifts"
                     /id="D728"
                     /incds=0
                     /nref=7
                     /ntot=31
                     /MaxReadThrough="1.81189"
                     /MaxDrop="3.56977"
                     /score="-4.52149284"
                     /energy="-5.9"
                     /TU="NA"
                     /idTUdmin="U1070"
                     /TUdmin=9
                     /isTUend="TRUE"
     promotor_-35    1343324..1343331
                     /Source="Nicolas_upshift_promotors"
                     /id="U1072"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.55044955044955"
                     /psig=1
                     /xcortree=2735
                     /SigmaFactorBS="tccgtaattgtgatgtaagcgcatttattacttttttGAGTT
                     GACatagcttgtttttTTCTGTAATCTCAGTGTGTCaattcaattaggaacttcgtta
                     g"
                     /listShort="S473, S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1343345..1343364
                     /Source="Nicolas_upshift_promotors"
                     /id="U1072"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.55044955044955"
                     /psig=1
                     /xcortree=2735
                     /SigmaFactorBS="tccgtaattgtgatgtaagcgcatttattacttttttGAGTT
                     GACatagcttgtttttTTCTGTAATCTCAGTGTGTCaattcaattaggaacttcgtta
                     g"
                     /listShort="S473, S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1343347..1343666
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1395590_1395909"
                     /HighExp="LBGstat, LBGtran, M40t45, MG 25, Mt0, Salt, MG
                     45, LPhT, BMM, MG t5"
                     /AntisenseName="ykzO"
                     /AntisenseCor="-0.16301119751811899"
                     /AntisenseRegPval="-2.1"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S473"
     upshifts        1343347
                     /Source="Nicolas_upshifts"
                     /id="U1072"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.55044955044955"
                     /psig=1
                     /xcortree=2735
                     /SigmaFactorBS="tccgtaattgtgatgtaagcgcatttattacttttttGAGTT
                     GACatagcttgtttttTTCTGTAATCTCAGTGTGTCaattcaattaggaacttcgtta
                     g"
                     /listShort="S473, S474, mgtE"
                     /GFF_Attribute="listLong"
     misc_RNA        1343379..1343532
                     /gene="swmG"
                     /locus_tag="BSU_misc_RNA_68"
                     /product="magnesium riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:15096624, 17803910, 21315082, 28455443"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15096624, 17803910,
                     21315082, 28455443; Product type n: RNA"
                     /function="16.12: Sense"
                     /function="16.3: Control"
     gene            1343379..1343532
                     /gene="swmG"
                     /locus_tag="BSU_misc_RNA_68"
     promotor_-35    1343644..1343653
                     /Source="Nicolas_upshift_promotors"
                     /id="U1073"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=1632
                     /SigmaFactorBS="ccaatcaaaggaggtgcggagtatggattctccccaTTCGAG
                     TCAAtctgaagaagtaCCCATATACTATGACAGCAAgacaattgattacacgatgagg
                     a"
                     /listShort="S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1343666..1343685
                     /Source="Nicolas_upshift_promotors"
                     /id="U1073"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=1632
                     /SigmaFactorBS="ccaatcaaaggaggtgcggagtatggattctccccaTTCGAG
                     TCAAtctgaagaagtaCCCATATACTATGACAGCAAgacaattgattacacgatgagg
                     a"
                     /listShort="S474, mgtE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1343668..1343769
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1395911_1396012"
                     /HighExp="LBGstat, LBGtran, M40t45, Mt0, LPhT, Paraq, MG
                     t5, MG 25, MG 60, Salt"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.99773400000000001"
                     /TUshortSig="SigK, SigA"
                     /TUshortPSig="0.876, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S474"
     upshifts        1343668
                     /Source="Nicolas_upshifts"
                     /id="U1073"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.876123876123876"
                     /psig="0.876123876123876"
                     /xcortree=1632
                     /SigmaFactorBS="ccaatcaaaggaggtgcggagtatggattctccccaTTCGAG
                     TCAAtctgaagaagtaCCCATATACTATGACAGCAAgacaattgattacacgatgagg
                     a"
                     /listShort="S474, mgtE"
                     /GFF_Attribute="listLong"
     CDS             1343770..1345125
                     /gene="mgtE"
                     /locus_tag="BSU_13300"
                     /old_locus_tag="BSU13300"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:15096624, 22970223, 24415722, 24968120, 25182490"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15096624, 22970223,
                     24415722, 24968120, 25182490; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="NP_389213.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13300"
                     /db_xref="EnsemblGenomes-Tr:CAB13187"
                     /db_xref="GOA:O34442"
                     /db_xref="InterPro:IPR000644"
                     /db_xref="InterPro:IPR006667"
                     /db_xref="InterPro:IPR006668"
                     /db_xref="InterPro:IPR006669"
                     /db_xref="InterPro:IPR036739"
                     /db_xref="SubtiList:BG13256"
                     /db_xref="UniProtKB/Swiss-Prot:O34442"
                     /translation="MVQNMTYDELILRIIILLRDGKIRDFRSVIDELQPYDMAFIFKE
                     MPEKHRARYLSYLTVDDITDMIGELEREFQLVVLNKVGKTKATLAMNKMDNDDLAQLL
                     EEMDEELKEQLLSSMEASESKAVQLLMNYPADSAGRMMTNRYVWIPQHYTVKDAVVKL
                     KSFAEIAESINYLYVINESKQLVGVLSYRDLILGEPEEKVQDLMFTRVISADALQDQE
                     EVARLIERYDFLAIPVVEENNVLVGIVTVDDIIDVVIREADEDYEKFAASGKDITFDT
                     KAYVAAYRRLPWLILLLFIGLISGSIISYFEDALKQVVALAFFMPMVSGMTGNTGTQS
                     LAVVIRGLSKEEMNKKTIVRLIFREFRTSIFIGAVCSVLIAIVSIIWQGNALLGFVVA
                     SSLFLTLIIGTMSGTIIPIILHKLKVDPAIASGPLITTLNDILSLLIYFGIATAFIHS
                     L*"
     gene            1343770..1345125
                     /gene="mgtE"
                     /locus_tag="BSU_13300"
                     /old_locus_tag="BSU13300"
     downshifts      1345116
                     /Source="Nicolas_upshifts"
                     /id="D729"
                     /incds=0
                     /nref=160
                     /ntot=239
                     /MaxReadThrough="1.02063"
                     /MaxDrop="7.38933"
                     /score="-4.14569718"
                     /energy="-8.9"
                     /TU="NA"
                     /idTUdmin="U1072"
                     /TUdmin="-4"
                     /isTUend="TRUE"
     CDS             complement(1345168..1345500)
                     /gene="tnrA"
                     /locus_tag="BSU_13310"
                     /old_locus_tag="BSU13310"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10231480, 12823818, 15916606, 16547045, 17085574,
                     17183219, 21435182, 23535029, 26635369"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10231480, 12823818,
                     15916606, 16547045, 17085574, 17183219, 21435182,
                     23535029, 26635369; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen sensing transcriptional regulator"
                     /protein_id="NP_389214.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13310"
                     /db_xref="EnsemblGenomes-Tr:CAB13188"
                     /db_xref="GOA:Q45666"
                     /db_xref="InterPro:IPR000551"
                     /db_xref="InterPro:IPR009061"
                     /db_xref="PDB:4S0R"
                     /db_xref="SubtiList:BG11805"
                     /db_xref="UniProtKB/Swiss-Prot:Q45666"
                     /translation="MTTEDHSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRS
                     SRGTRKYSFADVERLMDIANKREDGVQTAEILKDMRKKEQMLKNDPQVRKKMLEGQLN
                     AHFRYKNR*"
     gene            complement(1345168..1345500)
                     /gene="tnrA"
                     /locus_tag="BSU_13310"
                     /old_locus_tag="BSU13310"
     promotor_-10    complement(1345516..1345535)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1074"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.99100899100899"
                     /xcortree=1709
                     /SigmaFactorBS="tttgatgttagaaaatatgacaagcgtcagGTTTTTtctctt
                     tgttttttaTATACTATTATCAAAAGACAtccaggggtggaaaaatgaccacagaaga
                     t"
                     /listShort="tnrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1345526)
                     /Source="Nicolas_upshifts"
                     /id="U1074"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.99100899100899"
                     /xcortree=1709
                     /SigmaFactorBS="tttgatgttagaaaatatgacaagcgtcagGTTTTTtctctt
                     tgttttttaTATACTATTATCAAAAGACAtccaggggtggaaaaatgaccacagaaga
                     t"
                     /listShort="tnrA"
                     /GFF_Attribute="listLong"
     S_feature       complement(1345528..1345916)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1397771_1398159_c"
                     /HighExp="M9-stat, BC, LoTm, T1.30H, T0.30H, T2.0H, S8,
                     C30, T4.0H, T2.30H"
                     /AntisenseName="ykzB"
                     /AntisenseCor="-3.3870578787867499E-2"
                     /AntisenseRegPval="-0.2"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.92"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S475"
     promotor_-35    complement(1345551..1345556)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1074"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.625374625374625"
                     /psig="0.99100899100899"
                     /xcortree=1709
                     /SigmaFactorBS="tttgatgttagaaaatatgacaagcgtcagGTTTTTtctctt
                     tgttttttaTATACTATTATCAAAAGACAtccaggggtggaaaaatgaccacagaaga
                     t"
                     /listShort="tnrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_no_box 1345588..1345688
                     /Source="Nicolas_upshift_promotors"
                     /id="U1075"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.375624375624376"
                     /psig="0.295704295704296"
                     /xcortree=315
                     /SigmaFactorBS="agaagatttttgaaaaaatacggaagaaaaattaacaagaat
                     aatgcgtaacacccaagcgcgttttatcctttatgtaacgaatcaaacgaggaggaag
                     g"
                     /listShort="ykzB, ykoL"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        1345648
                     /Source="Nicolas_upshifts"
                     /id="U1075"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.375624375624376"
                     /psig="0.295704295704296"
                     /xcortree=315
                     /SigmaFactorBS="agaagatttttgaaaaaatacggaagaaaaattaacaagaat
                     aatgcgtaacacccaagcgcgttttatcctttatgtaacgaatcaaacgaggaggaag
                     g"
                     /listShort="ykzB, ykoL"
                     /GFF_Attribute="listLong"
     CDS             1345695..1345850
                     /gene="ykzB"
                     /locus_tag="BSU_13320"
                     /old_locus_tag="BSU13320"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 10671441"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_389215.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13320"
                     /db_xref="EnsemblGenomes-Tr:CAB13189"
                     /db_xref="SubtiList:BG13330"
                     /db_xref="UniProtKB/Swiss-Prot:O34923"
                     /translation="MEEEKAVSLAKEIIELDIKRDEMLETFMQLAGEQAFQLLRSVQN
                     GQYRKSS*"
     gene            1345695..1345850
                     /gene="ykzB"
                     /locus_tag="BSU_13320"
                     /old_locus_tag="BSU13320"
     promotor_-35    1345859..1345866
                     /Source="Nicolas_upshift_promotors"
                     /id="U1076"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.985014985014985"
                     /psig="0.006993006993007"
                     /xcortree=10
                     /SigmaFactorBS="caataccgaaaatcttcgtaaacataaatTCTTTACAttaga
                     tTCATACCACGTTCATTTAaaaagagtatcttttgtataggatacctcaaaatgaagg
                     a"
                     /listShort="ykoL, S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1345873..1345890
                     /Source="Nicolas_upshift_promotors"
                     /id="U1076"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.985014985014985"
                     /psig="0.006993006993007"
                     /xcortree=10
                     /SigmaFactorBS="caataccgaaaatcttcgtaaacataaatTCTTTACAttaga
                     tTCATACCACGTTCATTTAaaaagagtatcttttgtataggatacctcaaaatgaagg
                     a"
                     /listShort="ykoL, S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1345890
                     /Source="Nicolas_upshifts"
                     /id="U1076"
                     /multdbtbs="SigA"
                     /comp="M6"
                     /sig="Sig-"
                     /pcomp="0.985014985014985"
                     /psig="0.006993006993007"
                     /xcortree=10
                     /SigmaFactorBS="caataccgaaaatcttcgtaaacataaatTCTTTACAttaga
                     tTCATACCACGTTCATTTAaaaagagtatcttttgtataggatacctcaaaatgaagg
                     a"
                     /listShort="ykoL, S476, ykoM"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1345901..1345920)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1077"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.394605394605395"
                     /psig="0.92007992007992"
                     /xcortree=3030
                     /SigmaFactorBS="tcgttctttttctaaagcggatttcaataaattactCATAGC
                     GtcctccttcatttTGAGGTATCCTATACAAAAGatactctttttaaatgaacgtggt
                     a"
                     /listShort="S475, tnrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1345916)
                     /Source="Nicolas_upshifts"
                     /id="U1077"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.394605394605395"
                     /psig="0.92007992007992"
                     /xcortree=3030
                     /SigmaFactorBS="tcgttctttttctaaagcggatttcaataaattactCATAGC
                     GtcctccttcatttTGAGGTATCCTATACAAAAGatactctttttaaatgaacgtggt
                     a"
                     /listShort="S475, tnrA"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1345934..1345940)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1077"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.394605394605395"
                     /psig="0.92007992007992"
                     /xcortree=3030
                     /SigmaFactorBS="tcgttctttttctaaagcggatttcaataaattactCATAGC
                     GtcctccttcatttTGAGGTATCCTATACAAAAGatactctttttaaatgaacgtggt
                     a"
                     /listShort="S475, tnrA"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1345938..1346120
                     /gene="ykoL"
                     /locus_tag="BSU_13330"
                     /old_locus_tag="BSU13330"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 10671441"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_389216.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13330"
                     /db_xref="EnsemblGenomes-Tr:CAB13190"
                     /db_xref="SubtiList:BG13257"
                     /db_xref="UniProtKB/Swiss-Prot:O34763"
                     /translation="MSNLLKSALEKERRHYSEKLYQIGVYNKEVMNKMTISELRKEYA
                     YFFRSITNHKNYPYTR*"
     gene            1345938..1346120
                     /gene="ykoL"
                     /locus_tag="BSU_13330"
                     /old_locus_tag="BSU13330"
     downshifts      1346088
                     /Source="Nicolas_upshifts"
                     /id="D730"
                     /incds=0
                     /nref=2
                     /ntot=8
                     /MaxReadThrough="3.83398"
                     /MaxDrop="4.6651"
                     /score="19.6832496"
                     /energy="-11.2"
                     /TU="U1076"
                     /idTUdmin="U1075"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1346145..1346153
                     /Source="Nicolas_upshift_promotors"
                     /id="U1078"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=361
                     /SigmaFactorBS="atacaagataatgtataaggatttttttgcttttaGAAGGAA
                     TTtctcgaattaTAGCGAATACGTATAGTAAgggactgaactcttattatatgtaagg
                     g"
                     /listShort="S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1346164..1346182
                     /Source="Nicolas_upshift_promotors"
                     /id="U1078"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=361
                     /SigmaFactorBS="atacaagataatgtataaggatttttttgcttttaGAAGGAA
                     TTtctcgaattaTAGCGAATACGTATAGTAAgggactgaactcttattatatgtaagg
                     g"
                     /listShort="S476, ykoM"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1346170..1346252
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1398413_1398495"
                     /HighExp="T3.0H, M9-stat, T1.30H, T2.30H, Lbstat, T3.30H,
                     Lbtran, S2, T4.0H, T2.0H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigH, Sig-"
                     /TUshortPSig="0.996, 0.00699"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S476"
     upshifts        1346170
                     /Source="Nicolas_upshifts"
                     /id="U1078"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.996003996003996"
                     /psig="0.996003996003996"
                     /xcortree=361
                     /SigmaFactorBS="atacaagataatgtataaggatttttttgcttttaGAAGGAA
                     TTtctcgaattaTAGCGAATACGTATAGTAAgggactgaactcttattatatgtaagg
                     g"
                     /listShort="S476, ykoM"
                     /GFF_Attribute="listLong"
     CDS             1346253..1346717
                     /gene="ykoM"
                     /locus_tag="BSU_13340"
                     /old_locus_tag="BSU13340"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (MarR
                     family)"
                     /protein_id="NP_389217.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13340"
                     /db_xref="EnsemblGenomes-Tr:CAB13191"
                     /db_xref="GOA:O34949"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13258"
                     /db_xref="UniProtKB/Swiss-Prot:O34949"
                     /translation="MMRLSFNEEEVERAMNLYRVFARAFKSVSEHSIRDSKEHGFNPT
                     EFAVLELLYTRGPQKLQQIGSRLLLVSGNVTYVIDKLERNGFLVREQDPKDKRSVYAH
                     LTDKGNEYLDKIYPIHALRIARAFSGLSPDEQDQLIVLLKKAGIHSQHLLFR*"
     gene            1346253..1346717
                     /gene="ykoM"
                     /locus_tag="BSU_13340"
                     /old_locus_tag="BSU13340"
     downshifts      1346702
                     /Source="Nicolas_upshifts"
                     /id="D731"
                     /incds=0
                     /nref=70
                     /ntot=210
                     /MaxReadThrough="2.86787"
                     /MaxDrop="5.38705"
                     /score="24.8730632"
                     /energy="-9.8"
                     /TU="U1078"
                     /idTUdmin="U1078"
                     /TUdmin="-112"
                     /isTUend="FALSE"
     CDS             complement(1346732..1347853)
                     /gene="ykoN"
                     /locus_tag="BSU_13350"
                     /old_locus_tag="BSU13350"
                     /EC_number="2.4.1.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase"
                     /protein_id="NP_389218.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13350"
                     /db_xref="EnsemblGenomes-Tr:CAB13192"
                     /db_xref="GOA:C0SPB9"
                     /db_xref="InterPro:IPR009695"
                     /db_xref="SubtiList:BG13259"
                     /db_xref="UniProtKB/Swiss-Prot:C0SPB9"
                     /translation="MKNILIFPFLSISTGHHHVADALQAELESQGLAAEKIDIFSHSY
                     RRLEKLSSVAYLKWIQYFPKTYSGIYRLLACGEFQHDKRYFMYEWLFTQQMRHILQEK
                     QPDIAFCTHALPSYLLNRLKPEYPNLTVVNVYTDFFVNQLWGRKNIDYHFVPSTEVKK
                     QLISEGIDQNNIYLTGIPVHQNFEMESADTLQHHPPYTIIITGGSMGVGGILKWVQEL
                     SPGGKILYKILCGRNEKLYSYVKSLHHPLIEAIPYLHSKAEMNRLYEQATGIMTKPGG
                     VTISECLQKRLPVFIYHALPGQEEMNLNLLHERKLVTDMRNWDMQKAEEYIAAFFQSN
                     EQMKEYKKHVNGYLGEMSDRKIKDVLKRIIWKQKNTLLK*"
     gene            complement(1346732..1347853)
                     /gene="ykoN"
                     /locus_tag="BSU_13350"
                     /old_locus_tag="BSU13350"
     promotor_-35    1347141..1347149
                     /Source="Nicolas_upshift_promotors"
                     /id="U1079"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.97902097902098"
                     /psig="0.97902097902098"
                     /xcortree=1311
                     /SigmaFactorBS="cctcaatcaaggggtggtgtaaacttttgacatagGAGTAGA
                     GCttttcgtttctgcCGCATAATATTTTGTATAAGatctttccgcctggcgacagttc
                     c"
                     /listShort="S477, ykoP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1347163..1347182
                     /Source="Nicolas_upshift_promotors"
                     /id="U1079"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.97902097902098"
                     /psig="0.97902097902098"
                     /xcortree=1311
                     /SigmaFactorBS="cctcaatcaaggggtggtgtaaacttttgacatagGAGTAGA
                     GCttttcgtttctgcCGCATAATATTTTGTATAAGatctttccgcctggcgacagttc
                     c"
                     /listShort="S477, ykoP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1347166..1347944
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1399409_1400187"
                     /HighExp="S6, S8, S7, S5, BT, B36, S4, S3, Pyr, G/S"
                     /AntisenseName="ykoN"
                     /AntisenseCor="0.84084970563549499"
                     /AntisenseRegPval="-72.400000000000006"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigK"
                     /TUshortPSig="0.979"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S477"
     upshifts        1347166
                     /Source="Nicolas_upshifts"
                     /id="U1079"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.97902097902098"
                     /psig="0.97902097902098"
                     /xcortree=1311
                     /SigmaFactorBS="cctcaatcaaggggtggtgtaaacttttgacatagGAGTAGA
                     GCttttcgtttctgcCGCATAATATTTTGTATAAGatctttccgcctggcgacagttc
                     c"
                     /listShort="S477, ykoP"
                     /GFF_Attribute="listLong"
     promotor_-10    complement(1347882..1347893)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1080"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=819
                     /SigmaFactorBS="aaggaaacaagttttcatcttttcaccttccttatgatcaaa
                     aacaccCTTATATtttgtgaacgttctCCTCAAAATATAgttgccatatttttttagg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1347902)
                     /Source="Nicolas_upshifts"
                     /id="U1080"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=819
                     /SigmaFactorBS="aaggaaacaagttttcatcttttcaccttccttatgatcaaa
                     aacaccCTTATATtttgtgaacgttctCCTCAAAATATAgttgccatatttttttagg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1347908..1347914)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1080"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.99100899100899"
                     /psig="0.99100899100899"
                     /xcortree=819
                     /SigmaFactorBS="aaggaaacaagttttcatcttttcaccttccttatgatcaaa
                     aacaccCTTATATtttgtgaacgttctCCTCAAAATATAgttgccatatttttttagg
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1347945..1348496
                     /gene="ykoP"
                     /locus_tag="BSU_13360"
                     /old_locus_tag="BSU13360"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389219.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13360"
                     /db_xref="EnsemblGenomes-Tr:CAB13193"
                     /db_xref="SubtiList:BG13260"
                     /db_xref="UniProtKB/Swiss-Prot:O34495"
                     /translation="MKTCFLSIWRVVDPIYFFFSRLSLIDNDQKSVFRVRLTKYKGHH
                     VVLSDGTHIRKNDVLVKIHLHNIKLIRELQSIESAVRKGIIIYQKVYQSMPLLLDYIN
                     NHKKSEKIKGIIGITMLDKGVERLGFDVITPVNPFYRCFKKVSHVPILYLTSKPVSLR
                     HLPNSSYLFISKEKLQKTYQKKD*"
     gene            1347945..1348496
                     /gene="ykoP"
                     /locus_tag="BSU_13360"
                     /old_locus_tag="BSU13360"
     downshifts      1348464
                     /Source="Nicolas_upshifts"
                     /id="D732"
                     /incds=0
                     /nref=4
                     /ntot=25
                     /MaxReadThrough="3.31887"
                     /MaxDrop="3.7149"
                     /score="-2.92393792"
                     /energy="-7"
                     /TU="U1079"
                     /idTUdmin="U1079"
                     /TUdmin="-242"
                     /isTUend="FALSE"
     CDS             complement(1348524..1349336)
                     /gene="ykoQ"
                     /locus_tag="BSU_13370"
                     /old_locus_tag="BSU13370"
                     /EC_number="3.1.-.-"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative metallophosphoesterase"
                     /protein_id="NP_389220.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13370"
                     /db_xref="EnsemblGenomes-Tr:CAB13194"
                     /db_xref="GOA:O35040"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="InterPro:IPR029052"
                     /db_xref="SubtiList:BG13261"
                     /db_xref="UniProtKB/Swiss-Prot:O35040"
                     /translation="MFTILLSLAILVFVPFLYKANRNTKDVKVNTISIDQKDGLPARK
                     KLNILHLSDLHLENISVSPEELYHLTKDQPVDIIALTGDFLDRKRNIPKLAGYLNALQ
                     KLKPAYGMYAVFGNHDYVLKEEDFQRLKRVLEENGCITLQNEHVRIETAAGPVNIIGI
                     DDYSTNRSNITGSYQSLENGYHLVLTHDPNIILDMKDVHYDYLLSGHFHGGQIHWPKP
                     YHLVKMGKLVRMNMIKGLHYHHDKPFYISEGLGQTGVNIRVGSRPEVTFHQI*"
     gene            complement(1348524..1349336)
                     /gene="ykoQ"
                     /locus_tag="BSU_13370"
                     /old_locus_tag="BSU13370"
     promotor_-10    complement(1349296..1349315)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1081"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.485514485514486"
                     /psig="0.997002997002997"
                     /xcortree=2484
                     /SigmaFactorBS="acttactatactgatagaagggaggggatatattttGTTTAC
                     aatcttactttcaTTGGCCATACTCGTATTTGTgccatttctatataaagcgaaccgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1349310)
                     /Source="Nicolas_upshifts"
                     /id="U1081"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.485514485514486"
                     /psig="0.997002997002997"
                     /xcortree=2484
                     /SigmaFactorBS="acttactatactgatagaagggaggggatatattttGTTTAC
                     aatcttactttcaTTGGCCATACTCGTATTTGTgccatttctatataaagcgaaccgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1349329..1349334)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1081"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.485514485514486"
                     /psig="0.997002997002997"
                     /xcortree=2484
                     /SigmaFactorBS="acttactatactgatagaagggaggggatatattttGTTTAC
                     aatcttactttcaTTGGCCATACTCGTATTTGTgccatttctatataaagcgaaccgc
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1349437..1349443
                     /Source="Nicolas_upshift_promotors"
                     /id="U1082"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=939
                     /SigmaFactorBS="aattaatgggtagagacaggttgaaaaacggattgtcatatg
                     aTGAATGAtttggaagggaaaAGGGATAATAAAttttgacacatgaggcagaacatgc
                     c"
                     /listShort="S478, ykoS, ykoT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       1349454..1349528
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1401697_1401771"
                     /HighExp="S5, S6, S7, S4, S8, T5.0H, ferm, nit, S3, Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S478"
     upshifts        1349454
                     /Source="Nicolas_upshifts"
                     /id="U1082"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=939
                     /SigmaFactorBS="aattaatgggtagagacaggttgaaaaacggattgtcatatg
                     aTGAATGAtttggaagggaaaAGGGATAATAAAttttgacacatgaggcagaacatgc
                     c"
                     /listShort="S478, ykoS, ykoT"
                     /GFF_Attribute="listLong"
     promotor_-10    1349457..1349468
                     /Source="Nicolas_upshift_promotors"
                     /id="U1082"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=939
                     /SigmaFactorBS="aattaatgggtagagacaggttgaaaaacggattgtcatatg
                     aTGAATGAtttggaagggaaaAGGGATAATAAAttttgacacatgaggcagaacatgc
                     c"
                     /listShort="S478, ykoS, ykoT"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1349529..1351223
                     /gene="ykoS"
                     /locus_tag="BSU_13380"
                     /old_locus_tag="BSU13380"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_389221.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13380"
                     /db_xref="EnsemblGenomes-Tr:CAB13195"
                     /db_xref="GOA:O34830"
                     /db_xref="SubtiList:BG13262"
                     /db_xref="UniProtKB/Swiss-Prot:O34830"
                     /translation="MLRLMRQQKKETYYLWIALFLLLLYVSPLFILKEDAHIRVHDNL
                     DSNIAWYKVLADSGEIVGKVDAAIPQIINGLPRDAFGTEWSGIVWLHAFFSSMTAYAI
                     SQTVTRVVAFFGMYVLLKKHIIPEPKAAFIRIGVSLAFALTPFWPSGMLSTLGYPLAL
                     WAFLNIRKGDISWREWLTLGLLPLYSSFVLGFFFFLAGMACFWLYDAITKRRWNLMFL
                     GSIAFMTSIYLFVEYRLVYSMLFEHAPMHRIEFISSRHDVWHSLRLSIKNFVYGHNHV
                     MTVHTVVILPILMVVFAALLFKRNRTKPENVYLFLCVLNYGLSLWYAFWFNKIWAVPK
                     QKFAFLAEFNFARFHFLRPLVIYVSFALALYLIWRMGKGWKWLVYAAVAAQLMVLAPF
                     NEEYTYGVHYNAPTFREFYASEQFKEIKEYIGRPQDSYRVASIGLHPSIAQYNGFYTL
                     DTYNNLYPLSYKYEFRKIIEKELEKNSRLKQYFDEWGSRCYLFVDELGKRYDFKKNSK
                     KTINNLQLNTDVFKKMGGRYIFSSVPIMNAEQNHLALVKTFDHKDSAWRIYLYETR*"
     gene            1349529..1351223
                     /gene="ykoS"
                     /locus_tag="BSU_13380"
                     /old_locus_tag="BSU13380"
     CDS             1351236..1352249
                     /gene="ykoT"
                     /locus_tag="BSU_13390"
                     /old_locus_tag="BSU13390"
                     /EC_number="2.-.-.-"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.13: Shape"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycosyltransferase"
                     /protein_id="NP_389222.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13390"
                     /db_xref="EnsemblGenomes-Tr:CAB13196"
                     /db_xref="GOA:O34755"
                     /db_xref="InterPro:IPR001173"
                     /db_xref="InterPro:IPR029044"
                     /db_xref="SubtiList:BG13263"
                     /db_xref="UniProtKB/Swiss-Prot:O34755"
                     /translation="MKQSQPVLTIVVPCFNEEEVFQETSHQLTEVVDDLIEEKLIAED
                     SKILFVDDGSKDRTWALIAMESIRNKKVTGLKLACNVGHQKALLAGLHKAKNRSDCVI
                     SIDADLQDDISVIRDFMLKYHEGCEIVYGVRRSRKTDTFFKRTTALGFYRLMNKLGIK
                     LIYNHADFRLMNKRSLEELERYPEANLFLRGIVPMIGFKSAEVLYDRKERFAGKTKYP
                     LKKMLSFAFNGITSFSVAPIRFFTLLGFVLFFLSAVAGIGAFIQKLLGHTNAGWASLI
                     ISIWFLGGLQLMGIGIIGEYIGTIFSEVKRRPKYAIDIDLYNEQLSPLQRQEKERLEK
                     KYS*"
     gene            1351236..1352249
                     /gene="ykoT"
                     /locus_tag="BSU_13390"
                     /old_locus_tag="BSU13390"
     downshifts      1352234
                     /Source="Nicolas_upshifts"
                     /id="D733"
                     /incds=0
                     /nref=13
                     /ntot=35
                     /MaxReadThrough="0.53349"
                     /MaxDrop="4.80671"
                     /score="19.4012674"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U1082"
                     /TUdmin=8
                     /isTUend="TRUE"
     CDS             complement(1352275..1354110)
                     /gene="ligD"
                     /locus_tag="BSU_13400"
                     /old_locus_tag="BSU13400"
                     /EC_number="6.5.1.1"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:12215643, 16497325, 17293412, 23691176, 25355514,
                     26826709"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12215643, 16497325,
                     17293412, 23691176, 25355514, 26826709; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase subunit;
                     5'-2-deoxyribose-5-phosphate (dRP) lyase"
                     /protein_id="NP_389223.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13400"
                     /db_xref="EnsemblGenomes-Tr:CAB13197"
                     /db_xref="GOA:O34398"
                     /db_xref="InterPro:IPR012310"
                     /db_xref="InterPro:IPR014143"
                     /db_xref="InterPro:IPR014145"
                     /db_xref="InterPro:IPR014146"
                     /db_xref="InterPro:IPR033652"
                     /db_xref="SubtiList:BG13264"
                     /db_xref="UniProtKB/Swiss-Prot:O34398"
                     /translation="MAFTMQPVLTSSPPIGAEWRYEVKYDGYRCILRIHSSGVTLTSR
                     NGVELSSTFPEITQFAKTAFQHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRP
                     DKIQESANARPCCFLAFDLLERSGEDVTLLSYLDRKKSLRELISAAKLPASPDPYAKE
                     TIQSIPCYDHFDQLWEMVIKYDGEGIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCIT
                     GFNPNNGFLTVSVLKNGIMTPIASVSHGMRDEEKSAIREIMEQHGHQTPSGEFTLEPS
                     ICAAVQYLTILQGTLREVSFIGFEFQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIF
                     EKNKKTKEDFIQYMIEVSDYLLPFLKNRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQ
                     SFYDGSHEHIVCEDMSTLLWLCNQLALEFHVPFQTIKSRRPAEIVIDLDPPSRDDFLM
                     AVQAANELKRLLDSFGITSYPKLSGNKGIQLYIPLSPEAFTYEETRQFTQLIAEYCTN
                     AFPELFTTERLIKNRHCKLYLDYLQHAEGKTIICPYSTRGNELGTVAAPLYWHEVQSS
                     LTPALFTIDTVIDRIKKQGCPFFDFYRNPQDEPLSAILHQLKKKS*"
     gene            complement(1352275..1354110)
                     /gene="ligD"
                     /locus_tag="BSU_13400"
                     /old_locus_tag="BSU13400"
     downshifts      complement(1352324)
                     /Source="Nicolas_upshifts"
                     /id="D734"
                     /incds=0
                     /nref=10
                     /ntot=54
                     /MaxReadThrough="0.67916"
                     /MaxDrop="5.08051"
                     /score="-8.48510187"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U1083"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1354114..1355049)
                     /gene="ligV"
                     /locus_tag="BSU_13410"
                     /old_locus_tag="BSU13410"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:11095673, 12215643, 16497325, 16780573, 23691176,
                     25355514"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11095673, 12215643,
                     16497325, 16780573, 23691176, 25355514; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase subunit Ku;
                     AP/deoxyribose 5'-phosphate (5'-dRP)-lyase"
                     /protein_id="NP_389224.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13410"
                     /db_xref="EnsemblGenomes-Tr:CAB13198"
                     /db_xref="GOA:O34859"
                     /db_xref="InterPro:IPR006164"
                     /db_xref="InterPro:IPR009187"
                     /db_xref="InterPro:IPR016194"
                     /db_xref="SubtiList:BG13265"
                     /db_xref="UniProtKB/Swiss-Prot:O34859"
                     /translation="MNRTPSLHTKEKKGFIDMHTMWKGSISFGLVNIPIKLYAATEDK
                     DIKLRSLHKEDHAPIKYEKVCTNCEKTLSPDEIVKGYEYVKGKYVVLTDEDLKSLKQE
                     HEEKAVEIVDFVQLQEIDPIYFNRSYFVGPGDNGTKAYTLLREALRSTGKIGIANMTI
                     RSKQQLAILRVYENCIVMESIHYPDEVRSAAQVPGVPDQSNVNDKELQTAITLIDELT
                     AKFEPEKYEDTYRQALLQRVNDKLENKETAVTPDKAPPREDVIDLVSALQASIDRTRR
                     PNRETPAAAPAQAAEPKGAGDKKQKTTRKKASGTS*"
     gene            complement(1354114..1355049)
                     /gene="ligV"
                     /locus_tag="BSU_13410"
                     /old_locus_tag="BSU13410"
     promotor_-10    complement(1355020..1355031)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1083"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=856
                     /SigmaFactorBS="aataacagcgccggctttttttcacccataagttactaCACA
                     TGAatcgtactccttctCTTCACACTAAAgaaaaaaaggggtttatcgatatgcatac
                     a"
                     /listShort="ykoV, ykoU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1355030)
                     /Source="Nicolas_upshifts"
                     /id="U1083"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=856
                     /SigmaFactorBS="aataacagcgccggctttttttcacccataagttactaCACA
                     TGAatcgtactccttctCTTCACACTAAAgaaaaaaaggggtttatcgatatgcatac
                     a"
                     /listShort="ykoV, ykoU"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1355046..1355052)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1083"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=856
                     /SigmaFactorBS="aataacagcgccggctttttttcacccataagttactaCACA
                     TGAatcgtactccttctCTTCACACTAAAgaaaaaaaggggtttatcgatatgcatac
                     a"
                     /listShort="ykoV, ykoU"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1355086..1357488)
                     /gene="dgcW"
                     /locus_tag="BSU_13420"
                     /old_locus_tag="BSU13420"
                     /EC_number="2.7.7.65"
                     /function="16.3: Control"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:11728710, 17010156, 23893111, 28536559"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11728710, 17010156,
                     23893111, 28536559; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="YP_054577.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13420"
                     /db_xref="EnsemblGenomes-Tr:CAB13199"
                     /db_xref="GOA:O34311"
                     /db_xref="InterPro:IPR000160"
                     /db_xref="InterPro:IPR001633"
                     /db_xref="InterPro:IPR005330"
                     /db_xref="InterPro:IPR029787"
                     /db_xref="InterPro:IPR035919"
                     /db_xref="InterPro:IPR035965"
                     /db_xref="SubtiList:BG13266"
                     /db_xref="UniProtKB/Swiss-Prot:O34311"
                     /translation="MEIHVTYNTTLICLSILIACTASYISLELSRKVTINTGLKSKIW
                     LIGGSLIMGFGIWSMHFVGMMAVHMEMPMEYEFMPLMAAIGASVSGSFVSLYFVSRHI
                     LTYYRLLTGSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFVSLKIF
                     FDLAVKKHSEHLIFYKGVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQTFHW
                     SIFVTLIIFCIQTLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNIDAIFILSLEGD
                     IISSNHAGEEMISKFGFSMHDWRNYTSLKVKRLFEQVKKDKQAMNSDSDLITEKGQFH
                     LNITLIPVEVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDLPNRRHAISHLTK
                     VLNREHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSSVVPDNGFIARL
                     GGDEFIIILTDANTGTGEADVLARKIIQKFKKPFKIQDHTLVTSVSIGIAISPKDGTD
                     GLELMKKADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIENDRFVLHYQ
                     PQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACKQAR
                     IWHDKGYDLSVAINISARQFQSKDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDNLNH
                     SKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSEQIT
                     GAIIAMGHQLSLQVIAEGVENAAQKQLLFEKGCDHLQGFFFSRPIPPEQFEQFIIEQP
                     SQ*"
     gene            complement(1355086..1357488)
                     /gene="dgcW"
                     /locus_tag="BSU_13420"
                     /old_locus_tag="BSU13420"
     downshifts      complement(1355118)
                     /Source="Nicolas_upshifts"
                     /id="D735"
                     /incds=0
                     /nref=13
                     /ntot=101
                     /MaxReadThrough="1.93589"
                     /MaxDrop="3.26543"
                     /score="6.55794882"
                     /energy="-9"
                     /TU="NA"
                     /idTUdmin="U1084"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(1357336..1357538)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1409579_1409781_c"
                     /HighExp="Cold, GM 25, GM 10, GM 45, GM 15, GM-0.2,
                     GM-0.1, GM 5, GM 90, Glu"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigD"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S479"
     promotor_-10    complement(1357527..1357545)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1084"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2819
                     /SigmaFactorBS="agatctccctcgtatttctatcgttttgaaggCTGAAACTct
                     gcggttaagcaGCCGATAATAAAGAGAGTCaacaagactggaacacacgatacggggg
                     g"
                     /listShort="S479, ykoW"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1357538)
                     /Source="Nicolas_upshifts"
                     /id="U1084"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2819
                     /SigmaFactorBS="agatctccctcgtatttctatcgttttgaaggCTGAAACTct
                     gcggttaagcaGCCGATAATAAAGAGAGTCaacaagactggaacacacgatacggggg
                     g"
                     /listShort="S479, ykoW"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1357559..1357566)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1084"
                     /multdbtbs="-"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2819
                     /SigmaFactorBS="agatctccctcgtatttctatcgttttgaaggCTGAAACTct
                     gcggttaagcaGCCGATAATAAAGAGAGTCaacaagactggaacacacgatacggggg
                     g"
                     /listShort="S479, ykoW"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1357605..1357612
                     /Source="Nicolas_upshift_promotors"
                     /id="U1085"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.999000999001"
                     /xcortree=1761
                     /SigmaFactorBS="atagaaatacgagggagatctatttttAGTTCAACtgaccgt
                     gaaaaaTGTGTTAAAATCATCTTGATgttttccgaaaagagaaaaatgtatgatacat
                     a"
                     /listShort="ykoX, ykoY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1357626..1357645
                     /Source="Nicolas_upshift_promotors"
                     /id="U1085"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.999000999001"
                     /xcortree=1761
                     /SigmaFactorBS="atagaaatacgagggagatctatttttAGTTCAACtgaccgt
                     gaaaaaTGTGTTAAAATCATCTTGATgttttccgaaaagagaaaaatgtatgatacat
                     a"
                     /listShort="ykoX, ykoY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1357638
                     /Source="Nicolas_upshifts"
                     /id="U1085"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.432567432567433"
                     /psig="0.999000999001"
                     /xcortree=1761
                     /SigmaFactorBS="atagaaatacgagggagatctatttttAGTTCAACtgaccgt
                     gaaaaaTGTGTTAAAATCATCTTGATgttttccgaaaagagaaaaatgtatgatacat
                     a"
                     /listShort="ykoX, ykoY"
                     /GFF_Attribute="listLong"
     CDS             1357669..1358334
                     /gene="ykoX"
                     /locus_tag="BSU_13430"
                     /old_locus_tag="BSU13430"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406,
                     23687963; Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein"
                     /protein_id="NP_389226.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13430"
                     /db_xref="EnsemblGenomes-Tr:CAB13200"
                     /db_xref="GOA:O34908"
                     /db_xref="InterPro:IPR032816"
                     /db_xref="SubtiList:BG13267"
                     /db_xref="UniProtKB/Swiss-Prot:O34908"
                     /translation="MIHKHETRELVAIEELVMSWIEAFKSLSYFGIFLALSIEFIPAE
                     VVLPLAGYWVSKGDMTLAGVVLAGSLGGVAGPLTLYWIGRYGGRPFLERFGKYLFIKP
                     EALDKSDNFFKKHGGFVAFSGRFLPGIRTLISIPCGIAKMNVWVFSLYTFIAMLPITF
                     VYVYLGVKLGENWKAVGSILDQYMLPIGIAILALFLLYLLMKKRKKRTHSEQLSVFLK
                     NKR*"
     gene            1357669..1358334
                     /gene="ykoX"
                     /locus_tag="BSU_13430"
                     /old_locus_tag="BSU13430"
     promotor_-10    complement(1358203..1358222)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1086"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1257
                     /SigmaFactorBS="cctctttttcatcagtaagtagagcaggaacagcgCCAAAAT
                     CGCtatcccgatcggaAGCATATATTGATCAAGAATagagccgactgccttccaattt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1358220)
                     /Source="Nicolas_upshifts"
                     /id="U1086"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1257
                     /SigmaFactorBS="cctctttttcatcagtaagtagagcaggaacagcgCCAAAAT
                     CGCtatcccgatcggaAGCATATATTGATCAAGAATagagccgactgccttccaattt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1358236..1358245)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1086"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.998001998001998"
                     /psig="0.998001998001998"
                     /xcortree=1257
                     /SigmaFactorBS="cctctttttcatcagtaagtagagcaggaacagcgCCAAAAT
                     CGCtatcccgatcggaAGCATATATTGATCAAGAATagagccgactgccttccaattt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1358329..1358336
                     /Source="Nicolas_upshift_promotors"
                     /id="U1087"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.952047952047952"
                     /psig=1
                     /xcortree=600
                     /SigmaFactorBS="attatctgtatttttgaaaaataaaCGTTGACAaatcactgc
                     gctgcGCATATTATTGACGTATAAAatcatatttcttgaaatcccaaaggggagtagc
                     g"
                     /listShort="ykoY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1358351..1358370
                     /Source="Nicolas_upshift_promotors"
                     /id="U1087"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.952047952047952"
                     /psig=1
                     /xcortree=600
                     /SigmaFactorBS="attatctgtatttttgaaaaataaaCGTTGACAaatcactgc
                     gctgcGCATATTATTGACGTATAAAatcatatttcttgaaatcccaaaggggagtagc
                     g"
                     /listShort="ykoY"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1358364
                     /Source="Nicolas_upshifts"
                     /id="U1087"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.952047952047952"
                     /psig=1
                     /xcortree=600
                     /SigmaFactorBS="attatctgtatttttgaaaaataaaCGTTGACAaatcactgc
                     gctgcGCATATTATTGACGTATAAAatcatatttcttgaaatcccaaaggggagtagc
                     g"
                     /listShort="ykoY"
                     /GFF_Attribute="listLong"
     misc_RNA        1358390..1358523
                     /gene="mnrW"
                     /locus_tag="BSU_misc_RNA_87"
                     /product="manganese ion riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:25794618, 25794619"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 25794618, 25794619;
                     Product type n: RNA"
                     /function="16.12: Sense"
                     /function="16.3: Control"
     gene            1358390..1358523
                     /gene="mnrW"
                     /locus_tag="BSU_misc_RNA_87"
     CDS             1358411..1359385
                     /gene="ykoY"
                     /locus_tag="BSU_13440"
                     /old_locus_tag="BSU13440"
                     /function="16.1: Circulate"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15096624, 15849754,
                     16850406, 25794618, 25794619; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative manganese-related ion transporter"
                     /protein_id="NP_389227.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13440"
                     /db_xref="EnsemblGenomes-Tr:CAB13201"
                     /db_xref="GOA:O34997"
                     /db_xref="InterPro:IPR005496"
                     /db_xref="InterPro:IPR022493"
                     /db_xref="InterPro:IPR036259"
                     /db_xref="SubtiList:BG13268"
                     /db_xref="UniProtKB/Swiss-Prot:O34997"
                     /translation="MYSGNKVVISWIVSIGFVGMPEFMSSKTFALCRQRSFLHGPAGI
                     RSDEEKENNFFGRVSFMDAALLLEYGWVLLVLIGLEGILAADNALVMAVMVKHLPEEK
                     RKKALFYGLAGAFVLRFGSLFAISFLVNVWQVQAIGAIYLLYISASHLLKRYVFKKED
                     THKETKQSGFWPTVLKVELADIAFAVDSILAAVALAVTLPGTSLPKIGGLDGGQFLVI
                     LAGGIIGLVIMRFAASMFVKLLKERPSLETAAFVIVGWVGVKLALYTLAHRDIAVVSE
                     HFIHSGTWKLIFWGVLAAIAVCGWFMSGGKKQPEGAQNEQKNSTRERA*"
     gene            1358411..1359385
                     /gene="ykoY"
                     /locus_tag="BSU_13440"
                     /old_locus_tag="BSU13440"
     downshifts      1358474
                     /Source="Nicolas_upshifts"
                     /id="D736"
                     /incds=1
                     /nref=38
                     /ntot=211
                     /MaxReadThrough="5.00041"
                     /MaxDrop="4.46498"
                     /score="15.8563987"
                     /energy="-15"
                     /TU="U1085,U1087"
                     /idTUdmin="U1085"
                     /TUdmin="-902"
                     /isTUend="FALSE"
     downshifts      1359373
                     /Source="Nicolas_upshifts"
                     /id="D737"
                     /incds=0
                     /nref=16
                     /ntot=175
                     /MaxReadThrough="2.59801"
                     /MaxDrop="4.20782"
                     /score="24.4740487"
                     /energy="-13.7"
                     /TU="NA"
                     /idTUdmin="U1085"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     promotor_-35    1359495..1359503
                     /Source="Nicolas_upshift_promotors"
                     /id="U1088"
                     /multdbtbs="SigI"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1768
                     /SigmaFactorBS="atctttgttacaaaaaacacgcataaaaCCCCCTTAAttctt
                     tagaaaggCACGAAATCatgtatagaacgtcagaatggtttgtcataattgagacatt
                     g"
                     /listShort="S480, sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="promotor_-35"
     promotor_-10    1359517..1359525
                     /Source="Nicolas_upshift_promotors"
                     /id="U1088"
                     /multdbtbs="SigI"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1768
                     /SigmaFactorBS="atctttgttacaaaaaacacgcataaaaCCCCCTTAAttctt
                     tagaaaggCACGAAATCatgtatagaacgtcagaatggtttgtcataattgagacatt
                     g"
                     /listShort="S480, sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="promotor_-10"
     upshifts        1359527
                     /Source="Nicolas_upshifts"
                     /id="U1088"
                     /multdbtbs="SigI"
                     /comp="M2"
                     /sig="SigI"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1768
                     /SigmaFactorBS="atctttgttacaaaaaacacgcataaaaCCCCCTTAAttctt
                     tagaaaggCACGAAATCatgtatagaacgtcagaatggtttgtcataattgagacatt
                     g"
                     /listShort="S480, sigI, rsgI, S481"
                     /listLong="htpX"
     S_feature       1359530..1359616
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1411773_1411859"
                     /HighExp="M9-stat, T1.30H, T1.0H, T0.30H, T2.0H, T2.30H,
                     HiTm, M0t90, T3.0H, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.29969800000000002"
                     /TUshortSig="SigI"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S480"
     promotor_-35    1359589..1359596
                     /Source="Nicolas_upshift_promotors"
                     /id="U1089"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=1635
                     /SigmaFactorBS="tgagacattggaaatcaatatttctttttctCCTTTGCGaat
                     ccctatcaaaTTAGCTATCATTAATGAGTAgttatagggaggaactgaggtgaaacca
                     g"
                     /listShort="sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="promotor_-35"
     promotor_-10    1359610..1359629
                     /Source="Nicolas_upshift_promotors"
                     /id="U1089"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=1635
                     /SigmaFactorBS="tgagacattggaaatcaatatttctttttctCCTTTGCGaat
                     ccctatcaaaTTAGCTATCATTAATGAGTAgttatagggaggaactgaggtgaaacca
                     g"
                     /listShort="sigI, rsgI, S481"
                     /listLong="htpX"
                     /label="promotor_-10"
     upshifts        1359618
                     /Source="Nicolas_upshifts"
                     /id="U1089"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.809190809190809"
                     /psig=1
                     /xcortree=1635
                     /SigmaFactorBS="tgagacattggaaatcaatatttctttttctCCTTTGCGaat
                     ccctatcaaaTTAGCTATCATTAATGAGTAgttatagggaggaactgaggtgaaacca
                     g"
                     /listShort="sigI, rsgI, S481"
                     /listLong="htpX"
     CDS             1359649..1360404
                     /gene="sigI"
                     /locus_tag="BSU_13450"
                     /old_locus_tag="BSU13450"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11157964, 12682299, 17185538, 18156261, 21541672,
                     24125693, 28333276"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11157964, 12682299,
                     17185538, 18156261, 21541672, 24125693, 28333276; Product
                     type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor (heat stress
                     responsive)"
                     /protein_id="NP_389228.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13450"
                     /db_xref="EnsemblGenomes-Tr:CAB13218"
                     /db_xref="GOA:O31654"
                     /db_xref="InterPro:IPR007627"
                     /db_xref="InterPro:IPR013325"
                     /db_xref="InterPro:IPR014244"
                     /db_xref="InterPro:IPR014284"
                     /db_xref="SubtiList:BG13269"
                     /db_xref="UniProtKB/Swiss-Prot:O31654"
                     /translation="MKPVLSLLFKLGKKKQTLEKAVESIQKGNKDLQNELIQQYKPFI
                     AKTVSSVCKRYIDEKDDEFSIGLIAFNEAIEKYSPEKGNSLLAFAELIIKRKVIDYIR
                     KEARSAQNINIDLQEGDDQESSQSLIEAELSIDEYRRQIEQEQRREEILYFQKQLKDY
                     GLSFKELLENSPKHTDARQNAIKVAMTLVEHEELAAILYTKKQLPVKQLEQLVSVSRK
                     TIERNRKYIIAMCIIITGDYIYLKDYLKGVLHS*"
     gene            1359649..1360404
                     /gene="sigI"
                     /locus_tag="BSU_13450"
                     /old_locus_tag="BSU13450"
     CDS             1360401..1361546
                     /gene="rsgI"
                     /locus_tag="BSU_13460"
                     /old_locus_tag="BSU13460"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17185538, 23199363, 28333276"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17185538, 23199363,
                     28333276; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="sigmaI modulating factor"
                     /protein_id="NP_389229.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13460"
                     /db_xref="EnsemblGenomes-Tr:CAB13219"
                     /db_xref="GOA:O31655"
                     /db_xref="InterPro:IPR024449"
                     /db_xref="SubtiList:BG13272"
                     /db_xref="UniProtKB/Swiss-Prot:O31655"
                     /translation="MRRGIIVEKNKKFVTLLTPDGQFLKAKNDRHSYEIGEEIMLPSE
                     TRMGRRASFFDFFKLRPFKMGIFTMTAIMLFIFIVLPVFSNNKAYAYMTIDINPSVEM
                     ALNSDYEVIELTPLNDEGQKVVNDIDDWEKTDFKKVIDDIITDCSEHGYVKKSKEILI
                     STVYENTEDNTYKKAVKKQLNDVTEKYKTTYRMESLESDMQTREKAKKEGVSTGSYIK
                     SNEKNDNKDIKDDSSKPSGEEDQKSDENEDENTDQTDTQDSKQGDNEQLNDADSGDQK
                     EEKADDQIDDSDKDKKIKESDENTNTEKDGDHEQTPIQDPQDKGNENNGADKGQSQYH
                     RDWNNGEQGKNRSSSRRDNASDRRNPNGYSSDNHSAKNEDSPSAPGE*"
     gene            1360401..1361546
                     /gene="rsgI"
                     /locus_tag="BSU_13460"
                     /old_locus_tag="BSU13460"
     S_feature       1361547..1362706
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1413790_1414949"
                     /HighExp="HiTm, G135, G180, C30, G150, Cold, S8, MG 25,
                     H2O2, Lbstat"
                     /AntisenseName="ykrK"
                     /AntisenseCor="0.122248209149143"
                     /AntisenseRegPval="-1.3"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigI"
                     /TUshortPSig="1, 0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S481"
     CDS             complement(1361557..1361751)
                     /gene="sspD"
                     /locus_tag="BSU_13470"
                     /old_locus_tag="BSU13470"
                     /function="16.5: Explore"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:3009397, 3112127, 3121585, 9852018"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 3009397, 3112127,
                     3121585, 9852018; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="small acid-soluble spore protein
                     (alpha/beta-type SASP)"
                     /protein_id="NP_389230.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13470"
                     /db_xref="EnsemblGenomes-Tr:CAB13220"
                     /db_xref="GOA:P04833"
                     /db_xref="InterPro:IPR001448"
                     /db_xref="InterPro:IPR018126"
                     /db_xref="SubtiList:BG10788"
                     /db_xref="UniProtKB/Swiss-Prot:P04833"
                     /translation="MASRNKLVVPGVEQALDQFKLEVAQEFGVNLGSDTVARANGSVG
                     GEMTKRLVQQAQSQLNGTTK*"
     gene            complement(1361557..1361751)
                     /gene="sspD"
                     /locus_tag="BSU_13470"
                     /old_locus_tag="BSU13470"
     downshifts      complement(1361564)
                     /Source="Nicolas_upshifts"
                     /id="D738"
                     /incds=0
                     /nref=24
                     /ntot=36
                     /MaxReadThrough="1.67859"
                     /MaxDrop="4.68215"
                     /score="41.3727153"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U1090"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-10    complement(1361794..1361805)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1090"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=868
                     /SigmaFactorBS="cagaggccggggttttatttttctccacaacaattgccAGCA
                     TAAataaaccccgtataTTTCAAACTAAAtacgcgttaagaatttctttatcgaaaaa
                     g"
                     /listShort="sspD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1361804)
                     /Source="Nicolas_upshifts"
                     /id="U1090"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=868
                     /SigmaFactorBS="cagaggccggggttttatttttctccacaacaattgccAGCA
                     TAAataaaccccgtataTTTCAAACTAAAtacgcgttaagaatttctttatcgaaaaa
                     g"
                     /listShort="sspD"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1361820..1361826)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1090"
                     /multdbtbs="SigG"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=868
                     /SigmaFactorBS="cagaggccggggttttatttttctccacaacaattgccAGCA
                     TAAataaaccccgtataTTTCAAACTAAAtacgcgttaagaatttctttatcgaaaaa
                     g"
                     /listShort="sspD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1361882..1362583)
                     /gene="htpK"
                     /locus_tag="BSU_13480"
                     /old_locus_tag="BSU13480"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:22447908, 23042994"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 22447908, 23042994;
                     Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="regulator of quality control"
                     /protein_id="NP_389231.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13480"
                     /db_xref="EnsemblGenomes-Tr:CAB13221"
                     /db_xref="InterPro:IPR014975"
                     /db_xref="SubtiList:BG13273"
                     /db_xref="UniProtKB/Swiss-Prot:O31656"
                     /translation="MNIFKLSRTDMVRLLYSLKGQGEHSPLDILVQSANMSAEKAANH
                     LEIPEFLTRYERKKQKKEYGLSTNEIVELGNLCELTSLKSTAIQNWVKRDIKDLIGHP
                     ELGKKYSIEQAVILLIVRDLKSIYDFEHIRAILKVAFNTISDRSDDVISPIAYYESCA
                     YVLDAIHHQDTPSMKESNLQEIAEQETERLRHRFEELNDSQWLKIRQIIAITVLSILT
                     FHIQATAHKMTADIL*"
     gene            complement(1361882..1362583)
                     /gene="htpK"
                     /locus_tag="BSU_13480"
                     /old_locus_tag="BSU13480"
     downshifts      complement(1361916)
                     /Source="Nicolas_upshifts"
                     /id="D739"
                     /incds=0
                     /nref=174
                     /ntot=231
                     /MaxReadThrough="2.96889"
                     /MaxDrop="5.30355"
                     /score="41.3727153"
                     /energy="-15.2"
                     /TU="NA"
                     /idTUdmin="U1091"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       complement(1362584..1362664)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1414827_1414907_c"
                     /HighExp="LBGtran, dia0, LBGexp, Lbexp, Oxctl, G180,
                     M0t45, C90, Paraq, Mt0"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.998"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S482"
     promotor_-10    complement(1362656..1362675)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1091"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=2572
                     /SigmaFactorBS="aacccgtatatttaaattataaaacatcCATTTGAAaatgca
                     aggaattCGACGTATGATGTTAATGTAatttgctgacgcttgaattttgaacttatac
                     a"
                     /listShort="S482, ykrK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1362664)
                     /Source="Nicolas_upshifts"
                     /id="U1091"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=2572
                     /SigmaFactorBS="aacccgtatatttaaattataaaacatcCATTTGAAaatgca
                     aggaattCGACGTATGATGTTAATGTAatttgctgacgcttgaattttgaacttatac
                     a"
                     /listShort="S482, ykrK"
                     /GFF_Attribute="listLong"
     promotor_-35    1362680..1362687
                     /Source="Nicolas_upshift_promotors"
                     /id="U1092"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.898101898101898"
                     /psig=1
                     /xcortree=1759
                     /SigmaFactorBS="cagcaaattacattaacatcatacgtcgaattCCTTGCATtt
                     tcaaatggatgTTTTATAATTTAAATATACGggttcttttgaacttaaaataacggag
                     g"
                     /listShort="htpX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    complement(1362689..1362696)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1091"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.911088911088911"
                     /psig="0.998001998001998"
                     /xcortree=2572
                     /SigmaFactorBS="aacccgtatatttaaattataaaacatcCATTTGAAaatgca
                     aggaattCGACGTATGATGTTAATGTAatttgctgacgcttgaattttgaacttatac
                     a"
                     /listShort="S482, ykrK"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1362701..1362720
                     /Source="Nicolas_upshift_promotors"
                     /id="U1092"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.898101898101898"
                     /psig=1
                     /xcortree=1759
                     /SigmaFactorBS="cagcaaattacattaacatcatacgtcgaattCCTTGCATtt
                     tcaaatggatgTTTTATAATTTAAATATACGggttcttttgaacttaaaataacggag
                     g"
                     /listShort="htpX"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1362708
                     /Source="Nicolas_upshifts"
                     /id="U1092"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.898101898101898"
                     /psig=1
                     /xcortree=1759
                     /SigmaFactorBS="cagcaaattacattaacatcatacgtcgaattCCTTGCATtt
                     tcaaatggatgTTTTATAATTTAAATATACGggttcttttgaacttaaaataacggag
                     g"
                     /listShort="htpX"
                     /GFF_Attribute="listLong"
     CDS             1362754..1363650
                     /gene="htpX"
                     /locus_tag="BSU_13490"
                     /old_locus_tag="BSU13490"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 11860552, 12081643,
                     16076848, 16573693, 22447908, 22720735; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protease"
                     /protein_id="NP_389232.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13490"
                     /db_xref="EnsemblGenomes-Tr:CAB13222"
                     /db_xref="GOA:O31657"
                     /db_xref="InterPro:IPR001915"
                     /db_xref="InterPro:IPR022919"
                     /db_xref="SubtiList:BG13274"
                     /db_xref="UniProtKB/Swiss-Prot:O31657"
                     /translation="MAKRIFLFILTNILVLTTIGIVLSVLSSVTGVGTYFTADGGIDP
                     MALLVFSLVVGFVGSFTSLAISRWMAKTMMGVRVLNPKKHSLSYEEQQLVDRVHRLSR
                     SAGLTKMPEVGIYRSPEVNAFATGPSKRRSLVAVSSGLLEQMDDAAVEGVLAHEVAHI
                     TNGDMVTMTLLQGIVNTFVVFLSRIAAWIASRFVKEDLAPIVHFIAMIIFQIVFSILG
                     SLVVFAYSRHREFHADRGGADLAGKDKMIHALRTLKSYSSRILEDDQTAVQTLKINGK
                     KRSSLFSTHPDLDERIRRLEAK*"
     gene            1362754..1363650
                     /gene="htpX"
                     /locus_tag="BSU_13490"
                     /old_locus_tag="BSU13490"
     downshifts      1363644
                     /Source="Nicolas_upshifts"
                     /id="D740"
                     /incds=0
                     /nref=203
                     /ntot=268
                     /MaxReadThrough="3.02778"
                     /MaxDrop="6.27746"
                     /score="38.5173589"
                     /energy="-13.4"
                     /TU="NA"
                     /idTUdmin="U1092"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1363755..1363759
                     /Source="Nicolas_upshift_promotors"
                     /id="U1093"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.617382617382617"
                     /psig="0.994005994005994"
                     /xcortree=2515
                     /SigmaFactorBS="aaaaaataagcaagttaagaaaatgtttcgtaaaagCCTTTa
                     aaaatggacctaatATCTTTAGAATAATTACCGTacttaaaaagagaggcagaaggat
                     t"
                     /listShort="ktrD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1363775..1363794
                     /Source="Nicolas_upshift_promotors"
                     /id="U1093"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.617382617382617"
                     /psig="0.994005994005994"
                     /xcortree=2515
                     /SigmaFactorBS="aaaaaataagcaagttaagaaaatgtttcgtaaaagCCTTTa
                     aaaatggacctaatATCTTTAGAATAATTACCGTacttaaaaagagaggcagaaggat
                     t"
                     /listShort="ktrD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1363779
                     /Source="Nicolas_upshifts"
                     /id="U1093"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.617382617382617"
                     /psig="0.994005994005994"
                     /xcortree=2515
                     /SigmaFactorBS="aaaaaataagcaagttaagaaaatgtttcgtaaaagCCTTTa
                     aaaatggacctaatATCTTTAGAATAATTACCGTacttaaaaagagaggcagaaggat
                     t"
                     /listShort="ktrD"
                     /GFF_Attribute="listLong"
     CDS             1363824..1365173
                     /gene="ktrD"
                     /locus_tag="BSU_13500"
                     /old_locus_tag="BSU13500"
                     /EC_number="3.6.3.12"
                     /function="16.1: Circulate"
                     /experiment="publication(s) with functional evidences,
                     PMID:12562800, 15096624, 15849754, 16850406, 23963175"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12562800, 15096624,
                     15849754, 16850406, 23963175; Product type t :
                     transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="K+-transporting ATPase"
                     /protein_id="NP_389233.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13500"
                     /db_xref="EnsemblGenomes-Tr:CAB13223"
                     /db_xref="GOA:O31658"
                     /db_xref="InterPro:IPR003445"
                     /db_xref="SubtiList:BG13275"
                     /db_xref="UniProtKB/Swiss-Prot:O31658"
                     /translation="MRLKFGKLIQALSPAQLIALYYFLAVTVAVILLSLPAAHKPGAD
                     WTFIDALFTAVSSVSVTGLTVVDTADTFSTIGIFILAFVLQFGGIGIMTLGTFIWLIM
                     GKRIGLKERKLIMVDQNQSQFSGIVNLMKQVLFLILWIEFFGGLILGTYFLTYYDSYQ
                     EAYLHGFFASISATTNGGFDITGNSMIPFRHDYFVQFITMLLIIFGAIGFPVLVEVKD
                     FLFSKHRRYPFTLFTKITTITFGSLVLFGAIGIFALEANHAFAGKSWHDILFLSLFQS
                     TATRSGGLATIDISQLSDSTLFFICALMFIGASPSSVGGGIRTTTFALNLLALFHFAR
                     GNKAVKVFKRELHPADLMKSLVVTMMAILLVFGATLILTITEKHSLLELLFEVCSAFG
                     TTGLSLGITADLSSVGKCVIMIVMFIGRIGILTFLYLIGRKEIEANYHYPKERVIIG*
                     "
     gene            1363824..1365173
                     /gene="ktrD"
                     /locus_tag="BSU_13500"
                     /old_locus_tag="BSU13500"
     downshifts      1365161
                     /Source="Nicolas_upshifts"
                     /id="D741"
                     /incds=0
                     /nref=30
                     /ntot=182
                     /MaxReadThrough="0.838800000000001"
                     /MaxDrop="4.37717"
                     /score="20.0478288"
                     /energy="-10.7"
                     /TU="NA"
                     /idTUdmin="U1093"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     promotor_-35    1365222..1365228
                     /Source="Nicolas_upshift_promotors"
                     /id="U1094"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=834
                     /SigmaFactorBS="tttgcggtgttttttgattaccaaaaaaaagaTGTGTGCctc
                     ctgttcagttGGAGAACCTAACtccgacaggtgcaatttacgctcctgcatcttaaaa
                     t"
                     /listShort="S483, ykzP, ykzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1365242..1365253
                     /Source="Nicolas_upshift_promotors"
                     /id="U1094"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=834
                     /SigmaFactorBS="tttgcggtgttttttgattaccaaaaaaaagaTGTGTGCctc
                     ctgttcagttGGAGAACCTAACtccgacaggtgcaatttacgctcctgcatcttaaaa
                     t"
                     /listShort="S483, ykzP, ykzE"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1365250..1365317
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1417493_1417560"
                     /HighExp="S8, S6, S7, S5, ferm, nit, BT, B36, Pyr, G/S"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigGF"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S483"
     upshifts        1365250
                     /Source="Nicolas_upshifts"
                     /id="U1094"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=834
                     /SigmaFactorBS="tttgcggtgttttttgattaccaaaaaaaagaTGTGTGCctc
                     ctgttcagttGGAGAACCTAACtccgacaggtgcaatttacgctcctgcatcttaaaa
                     t"
                     /listShort="S483, ykzP, ykzE"
                     /GFF_Attribute="listLong"
     CDS             1365318..1365473
                     /gene="ykzP"
                     /locus_tag="BSU_13509"
                     /old_locus_tag="BSU13509"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="YP_003097718.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13509"
                     /db_xref="EnsemblGenomes-Tr:CAX52609"
                     /db_xref="UniProtKB/Swiss-Prot:C0H402"
                     /translation="MKRKAEVNEAIKNNNTPTESMDPNSYKTQYHDDPNFRGANRNSK
                     QGQQGGM*"
     gene            1365318..1365473
                     /gene="ykzP"
                     /locus_tag="BSU_13509"
                     /old_locus_tag="BSU13509"
     CDS             1365476..1365652
                     /gene="ykzE"
                     /locus_tag="BSU_13510"
                     /old_locus_tag="BSU13510"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms; PubMedId: 17322312"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved protein of unknown function"
                     /protein_id="NP_389234.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13510"
                     /db_xref="EnsemblGenomes-Tr:CAB13224"
                     /db_xref="SubtiList:BG13333"
                     /db_xref="UniProtKB/Swiss-Prot:O31659"
                     /translation="MKKNRHSRDMQNHKKPMNKKVLEEEFSSELGDYNAGKIIETLEV
                     TKPEKKKEKNKKQQ*"
     gene            1365476..1365652
                     /gene="ykzE"
                     /locus_tag="BSU_13510"
                     /old_locus_tag="BSU13510"
     promotor_no_box 1365542..1365642
                     /Source="Nicolas_upshift_promotors"
                     /id="U1095"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.683316683316683"
                     /psig="0.005994005994006"
                     /xcortree=278
                     /SigmaFactorBS="gaggaagaattctcaagtgaactcggggattacaatgccgga
                     aagatcatcgaaacgctggaagtcaccaagcctgaaaagaaaaaagaaaaaaacaaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        1365602
                     /Source="Nicolas_upshifts"
                     /id="U1095"
                     /multdbtbs="-"
                     /comp="M21"
                     /sig="Sig-"
                     /pcomp="0.683316683316683"
                     /psig="0.005994005994006"
                     /xcortree=278
                     /SigmaFactorBS="gaggaagaattctcaagtgaactcggggattacaatgccgga
                     aagatcatcgaaacgctggaagtcaccaagcctgaaaagaaaaaagaaaaaaacaaaa
                     a"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     downshifts      1365648
                     /Source="Nicolas_upshifts"
                     /id="D742"
                     /incds=0
                     /nref=56
                     /ntot=112
                     /MaxReadThrough="2.40289"
                     /MaxDrop="8.38761"
                     /score="26.5107018"
                     /energy="-19.7"
                     /TU="NA"
                     /idTUdmin="U1094"
                     /TUdmin=2
                     /isTUend="TRUE"
     CDS             complement(1365695..1366717)
                     /gene="ykrP"
                     /locus_tag="BSU_13520"
                     /old_locus_tag="BSU13520"
                     /EC_number="2.3.-.-"
                     /function="16.6: Maintain"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative integral membrane protein; putative
                     acyltransferase"
                     /protein_id="NP_389235.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13520"
                     /db_xref="EnsemblGenomes-Tr:CAB13225"
                     /db_xref="GOA:O31660"
                     /db_xref="InterPro:IPR002656"
                     /db_xref="SubtiList:BG13276"
                     /db_xref="UniProtKB/Swiss-Prot:O31660"
                     /translation="MSKSRDSYFDNAKFLLIFLVVFGHILRSFINDNHFMLYLYKFIY
                     TFHMPAFILVSGYFAKGFKRAGYVKKLAVKLIIPYLIFQIIYSVFYYIMQDESMANVN
                     PIDPQWSLWFLVSLFFWNLLLYPFSKLSKQWALFVSCGIAVLIGYLDFVSSTLSLSRT
                     FVFLPMFLVGFYLNKHHFDLLRSKRGKQIALGVLAAVFVICWGIDFDYSFLFGSKPYS
                     SFGDVTLVSGLSRIGWYVLAFGATFSFLALVPQKRYFFTKWGTRTFYVYLLHGFIIKT
                     LRQVGLEDWLTDYQSLVILLLLTAALTSVLSSNFVKTVAQPFIELRMTSLLQFVRGTG
                     KNAYLK*"
     gene            complement(1365695..1366717)
                     /gene="ykrP"
                     /locus_tag="BSU_13520"
                     /old_locus_tag="BSU13520"
     downshifts      complement(1365718)
                     /Source="Nicolas_upshifts"
                     /id="D743"
                     /incds=0
                     /nref=11
                     /ntot=58
                     /MaxReadThrough="2.29259"
                     /MaxDrop="3.64731"
                     /score="30.4184602"
                     /energy="-16.9"
                     /TU="NA"
                     /idTUdmin="U1096"
                     /TUdmin=92
                     /isTUend="FALSE"
     promotor_-10    complement(1366762..1366781)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1096"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.816183816183816"
                     /psig="0.987012987012987"
                     /xcortree=580
                     /SigmaFactorBS="ccgtcactttacatcgacctaacaatcagcatttttttaGAT
                     TCCTttttcatctttTATTTTAAAATATGTACCAGcagggaataatctcttagtgact
                     g"
                     /listShort="ykrP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1366778)
                     /Source="Nicolas_upshifts"
                     /id="U1096"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.816183816183816"
                     /psig="0.987012987012987"
                     /xcortree=580
                     /SigmaFactorBS="ccgtcactttacatcgacctaacaatcagcatttttttaGAT
                     TCCTttttcatctttTATTTTAAAATATGTACCAGcagggaataatctcttagtgact
                     g"
                     /listShort="ykrP"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1366793..1366799)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1096"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.816183816183816"
                     /psig="0.987012987012987"
                     /xcortree=580
                     /SigmaFactorBS="ccgtcactttacatcgacctaacaatcagcatttttttaGAT
                     TCCTttttcatctttTATTTTAAAATATGTACCAGcagggaataatctcttagtgact
                     g"
                     /listShort="ykrP"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1366906..1366914
                     /Source="Nicolas_upshift_promotors"
                     /id="U1097"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=548
                     /SigmaFactorBS="gtaatgtaatgacgctgaaattttctgaaatttatagggcaa
                     atGAAGGAAGTtcccgcatttTGTAGAAATATTGAGGGATaggttttgaagaaggagt
                     g"
                     /listShort="kinE, ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1366922
                     /Source="Nicolas_upshifts"
                     /id="U1097"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=548
                     /SigmaFactorBS="gtaatgtaatgacgctgaaattttctgaaatttatagggcaa
                     atGAAGGAAGTtcccgcatttTGTAGAAATATTGAGGGATaggttttgaagaaggagt
                     g"
                     /listShort="kinE, ogt, S485"
                     /GFF_Attribute="listLong"
     promotor_-10    1366925..1366943
                     /Source="Nicolas_upshift_promotors"
                     /id="U1097"
                     /multdbtbs="-"
                     /comp="M1"
                     /sig="SigH"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=548
                     /SigmaFactorBS="gtaatgtaatgacgctgaaattttctgaaatttatagggcaa
                     atGAAGGAAGTtcccgcatttTGTAGAAATATTGAGGGATaggttttgaagaaggagt
                     g"
                     /listShort="kinE, ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1366970..1369186
                     /gene="kinE"
                     /locus_tag="BSU_13530"
                     /old_locus_tag="BSU13530"
                     /function="16.3: Control"
                     /function="16.12: Sense"
                     /experiment="publication(s) with functional evidences,
                     PMID:11069677, 12169614, 16166384, 25701730"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11069677, 12169614,
                     16166384, 25701730; Product type rc: receptor"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="NP_389236.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13530"
                     /db_xref="EnsemblGenomes-Tr:CAB13226"
                     /db_xref="GOA:O31661"
                     /db_xref="InterPro:IPR000014"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR013767"
                     /db_xref="InterPro:IPR035965"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="SubtiList:BG13277"
                     /db_xref="UniProtKB/Swiss-Prot:O31661"
                     /translation="METLGVQTNSELREELNRLKEENARLKKELNQHQVIVNNTLDAI
                     FICDNEMRIVQANEATERMLQVDSEDLKKRSVLDFLFSIPKDELNLSVKKFFKKGFLW
                     KEVPIRLDCGATKYIEFLAKRGIGEDFFFVVMRDISSKKILEREFSMNEQLFKDLFDR
                     AVDGIVLFDKDGGFIDANLSFCKSFEINHNELSHLSLYEFIDSGSRKDFDNIWKALNR
                     KGKAKGELPVKLRSGVQKLFEFTITSNIISGFYMSIMRDITEKRSMELQLFKSEERFR
                     EIFENAMDAIIIWSNDGRIVKANQSACKIFELPMNLLLKRKLCDFLVDSQQKYSITKR
                     KYAKYGEIREELLFQMGNGQFKELEFTSKRTILENQHLTILRNVSDRKRMEKELRESE
                     LKFRKVFNGSMDGNVLFDNQYRIIDANPLASHILGLSHEEIKQHSLLDIISAYEIENL
                     ASPARQINFDEMDNEIPFLLSSGDNRKLEFSFKRNIIQNMNLAIFKDVTERKELEERL
                     RKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALYFNVITSELKRIES
                     IITEFLILAKPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQMQLDLIDDIPPIYCEP
                     NQLKQVFINILKNAIEVMPDGGNIFVTIKALDQDHVLISLKDEGIGMTEDKLKRLGEP
                     FYTTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHITLPVRQNAEERRNDE*"
     gene            1366970..1369186
                     /gene="kinE"
                     /locus_tag="BSU_13530"
                     /old_locus_tag="BSU13530"
     S_feature       complement(1368961..1369901)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1421204_1422144_c"
                     /HighExp="Pyr, Glucon, C30, Glu, Mal, M/G, G/S, Heat, Fru,
                     B36"
                     /AntisenseName="ogt"
                     /AntisenseCor="-0.33210294457391598"
                     /AntisenseRegPval="-7.6"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigA"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S484"
     promotor_-35    1369039..1369046
                     /Source="Nicolas_upshift_promotors"
                     /id="U1098"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.655344655344655"
                     /psig="0.999000999001"
                     /xcortree=2063
                     /SigmaFactorBS="acttggtgaaccgttttatacgacaaaggaacggggAACTGG
                     ACttgggcttatggtaAGCTATAAAATTATTGAAGAacatcaaggcgagattatggta
                     g"
                     /listShort="ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1369061..1369080
                     /Source="Nicolas_upshift_promotors"
                     /id="U1098"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.655344655344655"
                     /psig="0.999000999001"
                     /xcortree=2063
                     /SigmaFactorBS="acttggtgaaccgttttatacgacaaaggaacggggAACTGG
                     ACttgggcttatggtaAGCTATAAAATTATTGAAGAacatcaaggcgagattatggta
                     g"
                     /listShort="ogt, S485"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1369063
                     /Source="Nicolas_upshifts"
                     /id="U1098"
                     /multdbtbs="SigA"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.655344655344655"
                     /psig="0.999000999001"
                     /xcortree=2063
                     /SigmaFactorBS="acttggtgaaccgttttatacgacaaaggaacggggAACTGG
                     ACttgggcttatggtaAGCTATAAAATTATTGAAGAacatcaaggcgagattatggta
                     g"
                     /listShort="ogt, S485"
                     /GFF_Attribute="listLong"
     CDS             1369183..1369680
                     /gene="ogt"
                     /locus_tag="BSU_13540"
                     /old_locus_tag="BSU13540"
                     /EC_number="2.1.1.63"
                     /function="16.6: Maintain"
                     /experiment="publication(s) with functional evidences,
                     PMID:2105461, 2308822, 2359121, 2506524, 7565865"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 2105461, 2308822,
                     2359121, 2506524, 7565865; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="O6-alkylguanine DNA alkyltransferase"
                     /protein_id="NP_389237.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13540"
                     /db_xref="EnsemblGenomes-Tr:CAB13227"
                     /db_xref="GOA:P11742"
                     /db_xref="InterPro:IPR001497"
                     /db_xref="InterPro:IPR008332"
                     /db_xref="InterPro:IPR014048"
                     /db_xref="InterPro:IPR023546"
                     /db_xref="InterPro:IPR036217"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036631"
                     /db_xref="SubtiList:BG10848"
                     /db_xref="UniProtKB/Swiss-Prot:P11742"
                     /translation="MNYYTTAETPLGELIIAEEEDRITRLFLSQEDWVDWKETVQNTE
                     HKETPNLAEAKQQLQEYFAGERKTFSLPLSQKGTPFQQKVWQALERIPYGESRSYADI
                     AAAVGSPKAVRAVGQANKRNDLPIFVPCHRVIGKNSALTGYAGSKTEIKAFLLNIERI
                     SYKEK*"
     gene            1369183..1369680
                     /gene="ogt"
                     /locus_tag="BSU_13540"
                     /old_locus_tag="BSU13540"
     S_feature       1369681..1369920
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1421924_1422163"
                     /HighExp="Lbstat, S2, BT, BC, LPhT, dia15, LBGstat, M0t90,
                     M9-stat, Sw"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.981549"
                     /TUshortSig="SigA, SigH"
                     /TUshortPSig="0.999, 0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S485"
     CDS             1369770..1369895
                     /locus_tag="BSU_13545"
                     /old_locus_tag="BSU13545"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 5: Unknown function"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_009513954.1"
                     /translation="MKPSRSEKLAVFAELFVKLHILSSAQKDEIINVNKKKQKNR*"
     gene            1369770..1369895
                     /locus_tag="BSU_13545"
                     /old_locus_tag="BSU13545"
     downshifts      1369888
                     /Source="Nicolas_upshifts"
                     /id="D744"
                     /incds=0
                     /nref=80
                     /ntot=239
                     /MaxReadThrough="1.90528"
                     /MaxDrop="5.2481"
                     /score="4.84132266"
                     /energy="-15.5"
                     /TU="NA"
                     /idTUdmin="U1097"
                     /TUdmin="-4"
                     /isTUend="TRUE"
     CDS             complement(1369929..1370990)
                     /gene="mtnA"
                     /locus_tag="BSU_13550"
                     /old_locus_tag="BSU13550"
                     /EC_number="5.3.1.23"
                     /function="16.8: Protect"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14551435, 15102328, 16511105, 17690466, 18156470"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14551435, 15102328,
                     16511105, 17690466, 18156470; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribose-1-phosphate isomerase
                     (methionine salvage pathway)"
                     /protein_id="NP_389238.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13550"
                     /db_xref="EnsemblGenomes-Tr:CAB13228"
                     /db_xref="GOA:O31662"
                     /db_xref="InterPro:IPR000649"
                     /db_xref="InterPro:IPR005251"
                     /db_xref="InterPro:IPR011559"
                     /db_xref="InterPro:IPR027363"
                     /db_xref="PDB:2YRF"
                     /db_xref="PDB:2YVK"
                     /db_xref="SubtiList:BG13278"
                     /db_xref="UniProtKB/Swiss-Prot:O31662"
                     /translation="MTHSFAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDA
                     IVTLKVRGAPAIGITAAFGLALAAKDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSW
                     ALERLSHSVENAISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFKKGDRIMTIC
                     NAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLI
                     TDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLST
                     FDTKVKCGADIPIEERDPEEVRQISGVRTAPSNVPVFNPAFDITPHDLISGIITEKGI
                     MTGNYEEEIEQLFKGEKVH*"
     gene            complement(1369929..1370990)
                     /gene="mtnA"
                     /locus_tag="BSU_13550"
                     /old_locus_tag="BSU13550"
     downshifts      complement(1369946)
                     /Source="Nicolas_upshifts"
                     /id="D745"
                     /incds=0
                     /nref=261
                     /ntot=286
                     /MaxReadThrough="4.47312"
                     /MaxDrop="7.97339"
                     /score="34.04363"
                     /energy="-17.1"
                     /TU="U1099,U1102"
                     /idTUdmin="U1102"
                     /TUdmin="-418"
                     /isTUend="FALSE"
     CDS             complement(1370998..1372191)
                     /gene="mtnK"
                     /locus_tag="BSU_13560"
                     /old_locus_tag="BSU13560"
                     /EC_number="2.7.1.100"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:210167, 11545674, 15102328, 17522047, 23649237"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 210167, 11545674,
                     15102328, 17522047, 23649237; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribose kinase (methionine salvage
                     pathway, promiscuous)"
                     /protein_id="NP_389239.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13560"
                     /db_xref="EnsemblGenomes-Tr:CAB13229"
                     /db_xref="GOA:O31663"
                     /db_xref="InterPro:IPR002575"
                     /db_xref="InterPro:IPR009212"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="PDB:2OLC"
                     /db_xref="PDB:2PU8"
                     /db_xref="PDB:2PUI"
                     /db_xref="PDB:2PUL"
                     /db_xref="PDB:2PUN"
                     /db_xref="PDB:2PUP"
                     /db_xref="SubtiList:BG13279"
                     /db_xref="UniProtKB/Swiss-Prot:O31663"
                     /translation="MGVTKTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLN
                     YVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRV
                     FYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDYALEPKV
                     KKQLVKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKIEAAKL
                     KKSFLTSAETLIHGDLHTGSIFASEHETKVIDPEFAFYGPIGFDVGQFIANLFLNALS
                     RDGADREPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDTLSHIFEEAIGFA
                     GCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFK
                     LLVKE*"
     gene            complement(1370998..1372191)
                     /gene="mtnK"
                     /locus_tag="BSU_13560"
                     /old_locus_tag="BSU13560"
     downshifts      1371058
                     /Source="Nicolas_upshifts"
                     /id="D746"
                     /incds=1
                     /nref=1
                     /ntot=51
                     /MaxReadThrough="3.02938"
                     /MaxDrop="3.49719"
                     /score="4.84132266"
                     /energy="-15.5"
                     /TU="NA"
                     /idTUdmin="U1097"
                     /TUdmin=1166
                     /isTUend="FALSE"
     downshifts      complement(1372278)
                     /Source="Nicolas_upshifts"
                     /id="D747"
                     /incds=0
                     /nref=1
                     /ntot=1
                     /MaxReadThrough="8.61071"
                     /MaxDrop="3.05641"
                     /score="27.7981655"
                     /energy="-17.6"
                     /TU="U1099,U1102"
                     /idTUdmin="U1102"
                     /TUdmin="-2750"
                     /isTUend="FALSE"
     misc_RNA        complement(1372284..1372440)
                     /gene="mswC"
                     /locus_tag="BSU_misc_RNA_20"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 15102328, 17381305,
                     18039762"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 15102328, 17381305, 18039762; Product type n :
                     RNA"
                     /function="12: Regulatory functions"
     gene            complement(1372284..1372440)
                     /gene="mswC"
                     /locus_tag="BSU_misc_RNA_20"
     promotor_-10    complement(1372475..1372494)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1099"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2894
                     /SigmaFactorBS="agatttatattaaaaaataTATTGACAactaactaaattacc
                     TGTTACCATGTTCATCAACTgataaattagaattgtcaaacaagtgaatatattctct
                     t"
                     /listShort="NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1372476)
                     /Source="Nicolas_upshifts"
                     /id="U1099"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2894
                     /SigmaFactorBS="agatttatattaaaaaataTATTGACAactaactaaattacc
                     TGTTACCATGTTCATCAACTgataaattagaattgtcaaacaagtgaatatattctct
                     t"
                     /listShort="NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1372510..1372517)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1099"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2894
                     /SigmaFactorBS="agatttatattaaaaaataTATTGACAactaactaaattacc
                     TGTTACCATGTTCATCAACTgataaattagaattgtcaaacaagtgaatatattctct
                     t"
                     /listShort="NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1372520..1372523
                     /Source="Nicolas_upshift_promotors"
                     /id="U1100"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.276723276723277"
                     /psig="0.98001998001998"
                     /xcortree=2865
                     /SigmaFactorBS="ggtaacaggtaatttagttagttgtcaatataTTTTttaata
                     taaatctttTCTGATATCATCGAAAACAGgaatgctctcccgaacttctgcgctttct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             complement(1372524..1373303)
                     /gene="mtnU"
                     /locus_tag="BSU_13570"
                     /old_locus_tag="BSU13570"
                     /EC_number="3.5.1.3"
                     /function="16.8: Protect"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 2a: Function from experimental evidences
                     in other organisms; PubMedId: 12022921, 19464248,
                     19596042, 21288482, 23944997, 24387040; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ketoglutaramate omega-amidase"
                     /protein_id="NP_389240.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13570"
                     /db_xref="EnsemblGenomes-Tr:CAB13230"
                     /db_xref="GOA:O31664"
                     /db_xref="InterPro:IPR003010"
                     /db_xref="InterPro:IPR036526"
                     /db_xref="SubtiList:BG13280"
                     /db_xref="UniProtKB/Swiss-Prot:O31664"
                     /translation="MKWTISCLQFDISYGKPSENIKKAEFFIEKESKHADVLVLPELW
                     TTGYDLANLDELADEDGRSAQSWLKKTAKKHGVHIVAGSVAVRKNSDVYNTMYIADKE
                     GQIIKEYRKAHLFQLMDEHLYLSAGSEDGYFELDGVKSSGLICYDIRFPEWIRKHTTK
                     GANVLFISAEWPLPRLDHWKSLLIARAIENQCFVAACNCTGSNPDNEFAGHSLIIDPW
                     GRVLAEGGREEGIVRAEIDLQESAEVRESIPVFDDIRKDLY*"
     gene            complement(1372524..1373303)
                     /gene="mtnU"
                     /locus_tag="BSU_13570"
                     /old_locus_tag="BSU13570"
     promotor_-10    1372539..1372558
                     /Source="Nicolas_upshift_promotors"
                     /id="U1100"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.276723276723277"
                     /psig="0.98001998001998"
                     /xcortree=2865
                     /SigmaFactorBS="ggtaacaggtaatttagttagttgtcaatataTTTTttaata
                     taaatctttTCTGATATCATCGAAAACAGgaatgctctcccgaacttctgcgctttct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1372548
                     /Source="Nicolas_upshifts"
                     /id="U1100"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.276723276723277"
                     /psig="0.98001998001998"
                     /xcortree=2865
                     /SigmaFactorBS="ggtaacaggtaatttagttagttgtcaatataTTTTttaata
                     taaatctttTCTGATATCATCGAAAACAGgaatgctctcccgaacttctgcgctttct
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     promotor_-35    1372996..1373003
                     /Source="Nicolas_upshift_promotors"
                     /id="U1101"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.634365634365634"
                     /psig="0.99100899100899"
                     /xcortree=2893
                     /SigmaFactorBS="ttttctgtactctttaatgatttgcCCTTCCTTatccgcgat
                     gtaCATTGTATTATAAACATCAGaattcttcctgacagcgaccgatccggcgacaata
                     t"
                     /listShort="S486, mtnE"
                     /listLong="NA, mtnW, mtnX, mtnB, mtnD"
                     /label="promotor_-35"
     promotor_-10    1373016..1373035
                     /Source="Nicolas_upshift_promotors"
                     /id="U1101"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.634365634365634"
                     /psig="0.99100899100899"
                     /xcortree=2893
                     /SigmaFactorBS="ttttctgtactctttaatgatttgcCCTTCCTTatccgcgat
                     gtaCATTGTATTATAAACATCAGaattcttcctgacagcgaccgatccggcgacaata
                     t"
                     /listShort="S486, mtnE"
                     /listLong="NA, mtnW, mtnX, mtnB, mtnD"
                     /label="promotor_-10"
     upshifts        1373031
                     /Source="Nicolas_upshifts"
                     /id="U1101"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.634365634365634"
                     /psig="0.99100899100899"
                     /xcortree=2893
                     /SigmaFactorBS="ttttctgtactctttaatgatttgcCCTTCCTTatccgcgat
                     gtaCATTGTATTATAAACATCAGaattcttcctgacagcgaccgatccggcgacaata
                     t"
                     /listShort="S486, mtnE"
                     /listLong="NA, mtnW, mtnX, mtnB, mtnD"
     S_feature       1373038..1373355
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1425281_1425598"
                     /HighExp="LoTm, S8, C30, BC, S7, B36, B60, T2.0H, Sw,
                     UNK1"
                     /AntisenseName="mtnU"
                     /AntisenseCor="0.77659263363209297"
                     /AntisenseRegPval="-54.8"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.991"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S486"
     promotor_-35    1373325..1373332
                     /Source="Nicolas_upshift_promotors"
                     /id="U1103"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.929070929070929"
                     /psig=1
                     /xcortree=3072
                     /SigmaFactorBS="atttcatctttttaacaccccaaattttTCTTTACTtttttc
                     atttaaccATATATGATGATGGACTATCatttcaagatttttttagaaggtgagaata
                     g"
                     /listShort="mtnE, NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    complement(1373333..1373352)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1102"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.827172827172827"
                     /psig=1
                     /xcortree=2895
                     /SigmaFactorBS="caaatttcatctattctcaccttctaaaaaaaTCTTGAAAtg
                     atagtccatcatcATATATGGTTAAATGAAAAAagtaaagaaaaatttggggtgttaa
                     a"
                     /listShort="mtnU, NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     promotor_-10    1373347..1373366
                     /Source="Nicolas_upshift_promotors"
                     /id="U1103"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.929070929070929"
                     /psig=1
                     /xcortree=3072
                     /SigmaFactorBS="atttcatctttttaacaccccaaattttTCTTTACTtttttc
                     atttaaccATATATGATGATGGACTATCatttcaagatttttttagaaggtgagaata
                     g"
                     /listShort="mtnE, NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1373347)
                     /Source="Nicolas_upshifts"
                     /id="U1102"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.827172827172827"
                     /psig=1
                     /xcortree=2895
                     /SigmaFactorBS="caaatttcatctattctcaccttctaaaaaaaTCTTGAAAtg
                     atagtccatcatcATATATGGTTAAATGAAAAAagtaaagaaaaatttggggtgttaa
                     a"
                     /listShort="mtnU, NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
     upshifts        1373357
                     /Source="Nicolas_upshifts"
                     /id="U1103"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.929070929070929"
                     /psig=1
                     /xcortree=3072
                     /SigmaFactorBS="atttcatctttttaacaccccaaattttTCTTTACTtttttc
                     atttaaccATATATGATGATGGACTATCatttcaagatttttttagaaggtgagaata
                     g"
                     /listShort="mtnE, NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1373368..1373375)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1102"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.827172827172827"
                     /psig=1
                     /xcortree=2895
                     /SigmaFactorBS="caaatttcatctattctcaccttctaaaaaaaTCTTGAAAtg
                     atagtccatcatcATATATGGTTAAATGAAAAAagtaaagaaaaatttggggtgttaa
                     a"
                     /listShort="mtnU, NA, mtnK, mtnA, S484"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     CDS             1373398..1374594
                     /gene="mtnE"
                     /locus_tag="BSU_13580"
                     /old_locus_tag="BSU13580"
                     /EC_number="2.6.1.1"
                     /function="16.2: Construct biomass (Anabolism)"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12670965, 15102328, 23429746, 24387040"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12670965, 15102328,
                     23429746, 24387040; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-glutamine aminotransferase"
                     /protein_id="NP_389241.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13580"
                     /db_xref="EnsemblGenomes-Tr:CAB13231"
                     /db_xref="GOA:O31665"
                     /db_xref="InterPro:IPR004839"
                     /db_xref="InterPro:IPR015421"
                     /db_xref="InterPro:IPR015422"
                     /db_xref="InterPro:IPR015424"
                     /db_xref="SubtiList:BG13281"
                     /db_xref="UniProtKB/Swiss-Prot:O31665"
                     /translation="MKFEQSHVLKELPKQFFASLVQKVNRKLAEGHDVINLGQGNPDQ
                     PTPEHIVEEMKRAVADPENHKYSSFRGSYRLKSAAAAFYKREYGIDLDPETEVAVLFG
                     GKAGLVELPQCLLNPGDTILVPDPGYPDYWSGVTLAKAKMEMMPLVKDRAFLPDYSSI
                     TAEIREQAKLMYLNYPNNPTGAVATSEFFEDTVRFAAENGICVVHDFAYGAVGFDGCK
                     PLSFLQTEGAKDIGIEIYTLSKTYNMAGWRVGFAVGNASVIEAINLYQDHMFVSLFRA
                     TQEAAAEALLADQTCVAEQNARYESRRNAWITACREIGWDVTAPAGSFFAWLPVPEGY
                     TSEQFSDLLLEKANVAVAAGNGFGEYGEGYVRVGLLTSEERLKEAAYRIGKLNLFTQK
                     SIDKTL*"
     gene            1373398..1374594
                     /gene="mtnE"
                     /locus_tag="BSU_13580"
                     /old_locus_tag="BSU13580"
     promotor_-35    1374576..1374583
                     /Source="Nicolas_upshift_promotors"
                     /id="U1104"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2896
                     /SigmaFactorBS="acctgtttacccaaaaaagCATTGACAagaccttataacgaT
                     GGGATAATTCAAAATAATTtataaaatctatattttcttatcaagagcaggcagaggg
                     a"
                     /listShort="NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1374598..1374617
                     /Source="Nicolas_upshift_promotors"
                     /id="U1104"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2896
                     /SigmaFactorBS="acctgtttacccaaaaaagCATTGACAagaccttataacgaT
                     GGGATAATTCAAAATAATTtataaaatctatattttcttatcaagagcaggcagaggg
                     a"
                     /listShort="NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1374617
                     /Source="Nicolas_upshifts"
                     /id="U1104"
                     /multdbtbs="SigA,SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.954045954045954"
                     /psig="0.998001998001998"
                     /xcortree=2896
                     /SigmaFactorBS="acctgtttacccaaaaaagCATTGACAagaccttataacgaT
                     GGGATAATTCAAAATAATTtataaaatctatattttcttatcaagagcaggcagaggg
                     a"
                     /listShort="NA, mtnW, mtnX, mtnB, mtnD"
                     /GFF_Attribute="listLong"
     misc_RNA        1374633..1374733
                     /gene="mswD"
                     /locus_tag="BSU_misc_RNA_21"
                     /product="S-adenosylmethionine riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:10094622, 12626738, 12910260, 15102328, 17381305,
                     18039762"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10094622, 12626738,
                     12910260, 15102328, 17381305, 18039762; Product type n :
                     RNA"
                     /function="16.3: Control"
     gene            1374633..1374733
                     /gene="mswD"
                     /locus_tag="BSU_misc_RNA_21"
     downshifts      1374732
                     /Source="Nicolas_upshifts"
                     /id="D748"
                     /incds=0
                     /nref=49
                     /ntot=190
                     /MaxReadThrough="7.27369"
                     /MaxDrop="4.19981"
                     /score="-1.80590532"
                     /energy="-10.7"
                     /TU="U1103,U1104"
                     /idTUdmin="U1101"
                     /TUdmin=110
                     /isTUend="FALSE"
     CDS             1374818..1376035
                     /gene="mtnW"
                     /locus_tag="BSU_13590"
                     /old_locus_tag="BSU13590"
                     /EC_number="5.3.2.5"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12022921, 14551435, 15102328, 15950120, 16737967,
                     18403380"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12022921, 14551435,
                     15102328, 15950120, 16737967, 18403380; Product type e :
                     enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-5-methylthiopentyl-1-phosphate
                     enolase (DK-MTP-1-P enolase)"
                     /protein_id="NP_389242.2"
                     /db_xref="EnsemblGenomes-Gn:BSU13590"
                     /db_xref="EnsemblGenomes-Tr:CAB13232"
                     /db_xref="GOA:O31666"
                     /db_xref="InterPro:IPR000685"
                     /db_xref="InterPro:IPR017443"
                     /db_xref="InterPro:IPR017717"
                     /db_xref="InterPro:IPR033966"
                     /db_xref="InterPro:IPR036376"
                     /db_xref="InterPro:IPR036422"
                     /db_xref="PDB:2ZVI"
                     /db_xref="SubtiList:BG13282"
                     /db_xref="UniProtKB/Swiss-Prot:O31666"
                     /translation="MSELLATYLLTEPGADTEKKAEQIATGLTVGSWTDLPLVKQEQM
                     QKHKGRVIKVEEREGTAASEKQAVITIAYPEINFSQDIPALLTTVFGKLSLDGKIKLI
                     DLHFSEAFKRALPGPKFGVYGIRKLLGEFERPLLMSIFKGVIGRDLSDIKEQLRQQAL
                     GGVDLIKDDEIFFETGLAPFETRIAEGKQILKETYEQTGHKTLYAVNLTGRTADLKDK
                     ARRAAELGADALLFNVFAYGLDVMQGLAEDPEIPVPIMAHPAVSGAFTSSPFYGFSHA
                     LLLGKLNRYCGADFSLFPSPYGSVALPRADALAIHEECVREDAFNQTFAVPSAGIHPG
                     MVPLLMRDFGIDHIINAGGGVHGHPNGAQGGGRAFRAIIDAVLEAQPIDEKAEQCKDL
                     KLALDKWGKAEAV*"
     gene            1374818..1376035
                     /gene="mtnW"
                     /locus_tag="BSU_13590"
                     /old_locus_tag="BSU13590"
     CDS             1376032..1376739
                     /gene="mtnX"
                     /locus_tag="BSU_13600"
                     /old_locus_tag="BSU13600"
                     /EC_number="3.1.3.87"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12022921, 14551435, 15102328, 15950120, 17654724"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12022921, 14551435,
                     15102328, 15950120, 17654724; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-keto-5-methylthiopentenyl-1-
                     phosphatephosphatase (HK-MTPenyl-1-P phosphatase)"
                     /protein_id="NP_389243.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13600"
                     /db_xref="EnsemblGenomes-Tr:CAB13233"
                     /db_xref="GOA:O31667"
                     /db_xref="InterPro:IPR006384"
                     /db_xref="InterPro:IPR017718"
                     /db_xref="InterPro:IPR023214"
                     /db_xref="InterPro:IPR036412"
                     /db_xref="PDB:2FEA"
                     /db_xref="SubtiList:BG13283"
                     /db_xref="UniProtKB/Swiss-Prot:O31667"
                     /translation="MTTRKPFIICDFDGTITMNDNIINIMKTFAPPEWMALKDGVLSK
                     TLSIKEGVGRMFGLLPSSLKEEITSFVLEDAKIREGFREFVAFINEHEIPFYVISGGM
                     DFFVYPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSE
                     PNQYIIMIGDSVTDVEAAKLSDLCFARDYLLNECREQNLNHLPYQDFYEIRKEIENVK
                     EVQEWLQNKNAGESSLK*"
     gene            1376032..1376739
                     /gene="mtnX"
                     /locus_tag="BSU_13600"
                     /old_locus_tag="BSU13600"
     CDS             1376697..1377326
                     /gene="mtnB"
                     /locus_tag="BSU_13610"
                     /old_locus_tag="BSU13610"
                     /EC_number="4.2.1.109"
                     /function="16.11: Scavenge (Catabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12022921, 14551435, 15102328, 18391471, 23285211"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12022921, 14551435,
                     15102328, 18391471, 23285211; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribulose-1-phosphate dehydratase
                     (MTRu-1-P dehydratase)"
                     /protein_id="NP_389244.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13610"
                     /db_xref="EnsemblGenomes-Tr:CAB13234"
                     /db_xref="GOA:O31668"
                     /db_xref="InterPro:IPR001303"
                     /db_xref="InterPro:IPR017714"
                     /db_xref="InterPro:IPR036409"
                     /db_xref="SubtiList:BG13284"
                     /db_xref="UniProtKB/Swiss-Prot:O31668"
                     /translation="MAAKQERWRELAEVKRELAERDWFPATSGNLSIKVTDEPLTFLV
                     TASGKDKRKETVEDFLLVDQNGEPAESGHSLKPSAETLLHTHLYNKTNAGCCLHVHTV
                     NNNVISELYGDQKKITFKGQEIIKALGLWEENAEVTVPIIENPAHIPTLAALFAEEIS
                     EDSGAVLIRNHGITAWGKTAFEAKRVLEAYEFLFSYHLKLKTLEHQLVK*"
     gene            1376697..1377326
                     /gene="mtnB"
                     /locus_tag="BSU_13610"
                     /old_locus_tag="BSU13610"
     CDS             1377341..1377877
                     /gene="mtnD"
                     /locus_tag="BSU_13620"
                     /old_locus_tag="BSU13620"
                     /EC_number="1.13.11.54"
                     /EC_number="1.13.11.53"
                     /function="16.11: Scavenge (Catabolism)"
                     /function="16.8: Protect"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:10704478, 11371200, 12022880, 12022921, 12402029,
                     15102328, 16297065, 16783794, 24036122"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 10704478, 11371200,
                     12022880, 12022921, 12402029, 15102328, 16297065,
                     16783794, 24036122; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="acireductone dioxygenase (Ni2+ or
                     Fe2+-requiring)"
                     /protein_id="NP_389245.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13620"
                     /db_xref="EnsemblGenomes-Tr:CAB13235"
                     /db_xref="GOA:O31669"
                     /db_xref="InterPro:IPR004313"
                     /db_xref="InterPro:IPR011051"
                     /db_xref="InterPro:IPR014710"
                     /db_xref="InterPro:IPR023956"
                     /db_xref="SubtiList:BG13285"
                     /db_xref="UniProtKB/Swiss-Prot:O31669"
                     /translation="MATIRIHDEANTTIENQEEVASFLDSQEVIYEQWDITRLPEHLS
                     EKYDLTEEEKQQILDTFETEIKDISTRRGYKAQDVISLSDSNPKLDELLENFKREHHH
                     TDDEVRFIVSGHGIFVIQGQDGTFFDVRLNPGDLISVPENIRHYFTLQEDRKVVAVRI
                     FVTTEGWVPIYEKDSVNQ*"
     gene            1377341..1377877
                     /gene="mtnD"
                     /locus_tag="BSU_13620"
                     /old_locus_tag="BSU13620"
     S_feature       complement(1377724..1377917)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1429967_1430160_c"
                     /HighExp="Lbstat, Cold, LBGstat, T0.30H, M9-stat, B60,
                     ferm, T1.30H, LPhT, M0t90"
                     /AntisenseName="mtnD"
                     /AntisenseCor="-0.31139057410816301"
                     /AntisenseRegPval="-6.7"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S487"
     downshifts      1377877
                     /Source="Nicolas_upshifts"
                     /id="D749"
                     /incds=0
                     /nref=179
                     /ntot=227
                     /MaxReadThrough="1.58976"
                     /MaxDrop="6.10661"
                     /score="35.4563733"
                     /energy="-14.9"
                     /TU="NA"
                     /idTUdmin="U1103"
                     /TUdmin="-1"
                     /isTUend="TRUE"
     CDS             complement(1377918..1378238)
                     /gene="ykvA"
                     /locus_tag="BSU_13630"
                     /old_locus_tag="BSU13630"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 4: Unknown function but conserved in
                     otherorganisms"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="NP_389246.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13630"
                     /db_xref="EnsemblGenomes-Tr:CAB13236"
                     /db_xref="GOA:O31670"
                     /db_xref="InterPro:IPR010652"
                     /db_xref="SubtiList:BG13308"
                     /db_xref="UniProtKB/Swiss-Prot:O31670"
                     /translation="MKKKKAIMLGAAGGKAILKRKNRKKCIQHITTFFQMLRDWRNGD
                     YPRSQVKTLLLLTAAILYIVMPLDIIPDVILGLGFIDDAAVLGLIWTLIKKELSQYEK
                     WRLQ*"
     gene            complement(1377918..1378238)
                     /gene="ykvA"
                     /locus_tag="BSU_13630"
                     /old_locus_tag="BSU13630"
     downshifts      complement(1377976)
                     /Source="Nicolas_upshifts"
                     /id="D750"
                     /incds=0
                     /nref=5
                     /ntot=148
                     /MaxReadThrough="4.05831"
                     /MaxDrop="2.74575"
                     /score="18.5455371"
                     /energy="-11.3"
                     /TU="U1106"
                     /idTUdmin="U1106"
                     /TUdmin="-220"
                     /isTUend="FALSE"
     S_feature       complement(1378239..1378328)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1430482_1430571_c"
                     /HighExp="Lbstat, M9-stat, B60, T0.30H, LBGstat, M0t90,
                     T1.0H, S2, T3.0H, T3.30H"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S488"
     promotor_-35    1378264..1378270
                     /Source="Nicolas_upshift_promotors"
                     /id="U1105"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=237
                     /SigmaFactorBS="tcattgggcatacctcctgcctggcggcgTGTTTAAgatatt
                     cttcacctGGGTATTGTTCTTCTAATCctatcaatatatctattatacctgaaaaatt
                     a"
                     /listShort="S489, S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1378285..1378303
                     /Source="Nicolas_upshift_promotors"
                     /id="U1105"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=237
                     /SigmaFactorBS="tcattgggcatacctcctgcctggcggcgTGTTTAAgatatt
                     cttcacctGGGTATTGTTCTTCTAATCctatcaatatatctattatacctgaaaaatt
                     a"
                     /listShort="S489, S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1378295
                     /Source="Nicolas_upshifts"
                     /id="U1105"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp=1
                     /psig=1
                     /xcortree=237
                     /SigmaFactorBS="tcattgggcatacctcctgcctggcggcgTGTTTAAgatatt
                     cttcacctGGGTATTGTTCTTCTAATCctatcaatatatctattatacctgaaaaatt
                     a"
                     /listShort="S489, S490, spo0E, eag"
                     /GFF_Attribute="listLong"
     S_feature       1378296..1378380
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1430539_1430623"
                     /HighExp="Etha, Gly, BC, Salt, Sw, B60, LoTm, M9-stat,
                     LPhT, HiTm"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigB"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S489"
     promotor_-10    complement(1378310..1378329)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1106"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.999000999001"
                     /xcortree=1602
                     /SigmaFactorBS="tgcattattacagattatactttatttgtaaacatattttCA
                     TTaaataagttaatttTTCAGGTATAATAGATATATtgataggattagaagaacaata
                     c"
                     /listShort="S488, ykvA, S487"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1378327)
                     /Source="Nicolas_upshifts"
                     /id="U1106"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.999000999001"
                     /xcortree=1602
                     /SigmaFactorBS="tgcattattacagattatactttatttgtaaacatattttCA
                     TTaaataagttaatttTTCAGGTATAATAGATATATtgataggattagaagaacaata
                     c"
                     /listShort="S488, ykvA, S487"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1378344..1378347)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1106"
                     /multdbtbs="-"
                     /comp="M7"
                     /sig="SigA"
                     /pcomp="0.682317682317682"
                     /psig="0.999000999001"
                     /xcortree=1602
                     /SigmaFactorBS="tgcattattacagattatactttatttgtaaacatattttCA
                     TTaaataagttaatttTTCAGGTATAATAGATATATtgataggattagaagaacaata
                     c"
                     /listShort="S488, ykvA, S487"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-35    1378354..1378361
                     /Source="Nicolas_upshift_promotors"
                     /id="U1107"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2934
                     /SigmaFactorBS="tacctgaaaaattaacttatttaatgaaaataTGTTTACAaa
                     taaagtataatcTGTAATAATGCACAATAACCcaatcaaacttgtttcctatttctta
                     g"
                     /listShort="S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1378376..1378395
                     /Source="Nicolas_upshift_promotors"
                     /id="U1107"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2934
                     /SigmaFactorBS="tacctgaaaaattaacttatttaatgaaaataTGTTTACAaa
                     taaagtataatcTGTAATAATGCACAATAACCcaatcaaacttgtttcctatttctta
                     g"
                     /listShort="S490, spo0E, eag"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     S_feature       1378382..1378440
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1430625_1430683"
                     /HighExp="Etha, Gly, Sw, BC, LoTm, B36, T3.30H, Salt,
                     T5.0H, B60"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA, SigB"
                     /TUshortPSig="1, 1"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S490"
     upshifts        1378382
                     /Source="Nicolas_upshifts"
                     /id="U1107"
                     /multdbtbs="SigA"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.988011988011988"
                     /psig=1
                     /xcortree=2934
                     /SigmaFactorBS="tacctgaaaaattaacttatttaatgaaaataTGTTTACAaa
                     taaagtataatcTGTAATAATGCACAATAACCcaatcaaacttgtttcctatttctta
                     g"
                     /listShort="S490, spo0E, eag"
                     /GFF_Attribute="listLong"
     downshifts      complement(1378438)
                     /Source="Nicolas_upshifts"
                     /id="D751"
                     /incds=0
                     /nref=3
                     /ntot=61
                     /MaxReadThrough="0.87927"
                     /MaxDrop="3.53961"
                     /score="18.5455371"
                     /energy="-11.3"
                     /TU="NA"
                     /idTUdmin="U1106"
                     /TUdmin="-682"
                     /isTUend="FALSE"
     CDS             1378441..1378698
                     /gene="spo0E"
                     /locus_tag="BSU_13640"
                     /old_locus_tag="BSU13640"
                     /function="16.13: Shape"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:15057450, 15916600, 17001075, 19332814, 22524514"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 15057450, 15916600,
                     17001075, 19332814, 22524514; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="negative regulatory phosphatase acting on
                     Spo0A-P (sporulation)"
                     /protein_id="NP_389247.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13640"
                     /db_xref="EnsemblGenomes-Tr:CAB13237"
                     /db_xref="GOA:P05043"
                     /db_xref="InterPro:IPR018540"
                     /db_xref="InterPro:IPR037208"
                     /db_xref="SubtiList:BG10769"
                     /db_xref="UniProtKB/Swiss-Prot:P05043"
                     /translation="MGGSSEQERLLVSIDEKRKLMIDAARKQGFTGHDTIRHSQELDC
                     LINEYHQLMQENEHSQGIQGLVKKLGLWPRRDVMPAYDANK*"
     gene            1378441..1378698
                     /gene="spo0E"
                     /locus_tag="BSU_13640"
                     /old_locus_tag="BSU13640"
     downshifts      1378692
                     /Source="Nicolas_upshifts"
                     /id="D752"
                     /incds=0
                     /nref=7
                     /ntot=169
                     /MaxReadThrough="4.39402"
                     /MaxDrop="3.59614"
                     /score="0.224700481"
                     /energy="-5.9"
                     /TU="U1105,U1107"
                     /idTUdmin="U1105"
                     /TUdmin="-440"
                     /isTUend="FALSE"
     CDS             1378784..1379215
                     /gene="eag"
                     /locus_tag="BSU_13650"
                     /old_locus_tag="BSU13650"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15849754, 16850406;
                     Product type m: membrane component"
                     /codon_start=1
                     /transl_table=11
                     /product="putative small membrane protein"
                     /protein_id="NP_389248.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13650"
                     /db_xref="EnsemblGenomes-Tr:CAB13238"
                     /db_xref="GOA:P06630"
                     /db_xref="SubtiList:BG10770"
                     /db_xref="UniProtKB/Swiss-Prot:P06630"
                     /translation="MKELAILITEMVNQFHDAFISLCGIFGIHLTDKEMHFWVIGIFG
                     IFFFGVTHAVFTWLSKWSMTALSFIYTVTVIIVIVFAIEIQQKVTGRGNMEFLDATEG
                     IKGFLVFFMFFLLLKMLLRFIKILFSGRPASKSNGNARSRR*"
     gene            1378784..1379215
                     /gene="eag"
                     /locus_tag="BSU_13650"
                     /old_locus_tag="BSU13650"
     CDS             complement(1379243..1380763)
                     /gene="kinD"
                     /locus_tag="BSU_13660"
                     /old_locus_tag="BSU13660"
                     /EC_number="2.7.13.3"
                     /function="16.13: Shape"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:11069677, 11673427, 16166384, 10411754, 21622736,
                     22074846, 22716461, 23569226"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11069677, 11673427,
                     16166384, 10411754, 21622736, 22074846, 22716461,
                     23569226; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase phosphorylating Spo0A"
                     /protein_id="NP_389249.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13660"
                     /db_xref="EnsemblGenomes-Tr:CAB13239"
                     /db_xref="GOA:O31671"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR003661"
                     /db_xref="InterPro:IPR004358"
                     /db_xref="InterPro:IPR005467"
                     /db_xref="InterPro:IPR029151"
                     /db_xref="InterPro:IPR033479"
                     /db_xref="InterPro:IPR036097"
                     /db_xref="InterPro:IPR036890"
                     /db_xref="PDB:4JGO"
                     /db_xref="PDB:4JGP"
                     /db_xref="PDB:4JGQ"
                     /db_xref="PDB:4JGR"
                     /db_xref="SubtiList:BG13309"
                     /db_xref="UniProtKB/Swiss-Prot:O31671"
                     /translation="MLERCKLKILKGACGRVKLYIILVVIPAIVISFFVYEKEKDTIA
                     AEHKQEASVLLNLHRNKINYLIGETMARMTSLSIAIDRPVDIKKMQSILEKTFDSEPR
                     FSGLYFLNAKGDVTASTTELKTKVNLADRSFFIKAKETKKTVISDSYSSRITGQPIFT
                     ICVPVLDSKRNVTDYLVAAIQIDYLKNLINLLSPDVYIEVVNQDGKMIFASGQASHAE
                     DQKPVSGYLDDISWNMKVYPNPVTIEELSKSLVLPLSCIIVLLNILFILVLYYLLKRQ
                     TQLERSENEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIE
                     QEIKRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTE
                     QPLLVKCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGISQE
                     MLDHIFLPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLPVSAS*"
     gene            complement(1379243..1380763)
                     /gene="kinD"
                     /locus_tag="BSU_13660"
                     /old_locus_tag="BSU13660"
     downshifts      complement(1379255)
                     /Source="Nicolas_upshifts"
                     /id="D753"
                     /incds=0
                     /nref=106
                     /ntot=227
                     /MaxReadThrough="0.62895"
                     /MaxDrop="5.24795"
                     /score="18.5455371"
                     /energy="-11.3"
                     /TU="NA"
                     /idTUdmin="U1109"
                     /TUdmin="-3"
                     /isTUend="TRUE"
     promotor_-35    1379964..1379970
                     /Source="Nicolas_upshift_promotors"
                     /id="U1108"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=948
                     /SigmaFactorBS="ctgggtctgccgcttcagcaaataatacagcacgAGAATAAa
                     aaggatattcagCAGAACAATAATacatgaaagcggaagcacaaggcttttcgacagt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1379984..1379995
                     /Source="Nicolas_upshift_promotors"
                     /id="U1108"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=948
                     /SigmaFactorBS="ctgggtctgccgcttcagcaaataatacagcacgAGAATAAa
                     aaggatattcagCAGAACAATAATacatgaaagcggaagcacaaggcttttcgacagt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1379990
                     /Source="Nicolas_upshifts"
                     /id="U1108"
                     /multdbtbs="-"
                     /comp="M8"
                     /sig="SigGF"
                     /pcomp=1
                     /psig=1
                     /xcortree=948
                     /SigmaFactorBS="ctgggtctgccgcttcagcaaataatacagcacgAGAATAAa
                     aaggatattcagCAGAACAATAATacatgaaagcggaagcacaaggcttttcgacagt
                     t"
                     /GFF_Attribute="listShort"
                     /GFF_Attribute="listLong"
     misc_feature    complement(1380771..1380790)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1109"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2145
                     /SigmaFactorBS="aagcttgccaacatctttttctaatttttttggttatttttt
                     cttattaaagaagaagaaacAATGATATAATACCTCTAATcaggtgtatgttggagcg
                     a"
                     /listShort="kinD"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1380792)
                     /Source="Nicolas_upshifts"
                     /id="U1109"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.98101898101898"
                     /psig=1
                     /xcortree=2145
                     /SigmaFactorBS="aagcttgccaacatctttttctaatttttttggttatttttt
                     cttattaaagaagaagaaacAATGATATAATACCTCTAATcaggtgtatgttggagcg
                     a"
                     /listShort="kinD"
                     /GFF_Attribute="listLong"
     promotor_-35    1380890..1380897
                     /Source="Nicolas_upshift_promotors"
                     /id="U1110"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2454
                     /SigmaFactorBS="cattttaaaaaagaagagaaatattggaaagattttTATTGA
                     CAttttggtctttgttTATTAATGTTTCTCTGTAACggtttctaaaaggatgattgag
                     a"
                     /listShort="mhqR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1380912..1380931
                     /Source="Nicolas_upshift_promotors"
                     /id="U1110"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2454
                     /SigmaFactorBS="cattttaaaaaagaagagaaatattggaaagattttTATTGA
                     CAttttggtctttgttTATTAATGTTTCTCTGTAACggtttctaaaaggatgattgag
                     a"
                     /listShort="mhqR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1380914
                     /Source="Nicolas_upshifts"
                     /id="U1110"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.971028971028971"
                     /psig=1
                     /xcortree=2454
                     /SigmaFactorBS="cattttaaaaaagaagagaaatattggaaagattttTATTGA
                     CAttttggtctttgttTATTAATGTTTCTCTGTAACggtttctaaaaggatgattgag
                     a"
                     /listShort="mhqR"
                     /GFF_Attribute="listLong"
     CDS             1380956..1381393
                     /gene="mhqR"
                     /locus_tag="BSU_13670"
                     /old_locus_tag="BSU13670"
                     /function="16.3: Control"
                     /experiment="publication(s) with functional evidences,
                     PMID:17725564, 17962296, 18282125"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17725564, 17962296,
                     18282125; Product type r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator (MarR family)"
                     /protein_id="NP_389250.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13670"
                     /db_xref="EnsemblGenomes-Tr:CAB13240"
                     /db_xref="GOA:O31672"
                     /db_xref="InterPro:IPR000835"
                     /db_xref="InterPro:IPR023187"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13310"
                     /db_xref="UniProtKB/Swiss-Prot:O31672"
                     /translation="MTEKSLKLFIVLSRAYRSINDHMNKHIHKHGLNPTEFAVLELLY
                     HKGDQPLQQIGDKILLASGSITYVVDKLEQKELLIRKASPTDRRVTFAQITEKGIGLL
                     NDIFPDHAAEIDEMISVLSEEEVEMCTEMLKRVGLNAKQFHNK*"
     gene            1380956..1381393
                     /gene="mhqR"
                     /locus_tag="BSU_13670"
                     /old_locus_tag="BSU13670"
     downshifts      1381376
                     /Source="Nicolas_upshifts"
                     /id="D754"
                     /incds=0
                     /nref=210
                     /ntot=257
                     /MaxReadThrough="1.20686"
                     /MaxDrop="5.47215"
                     /score="1.59181784"
                     /energy="-8.9"
                     /TU="U1110"
                     /idTUdmin="U1110"
                     /TUdmin="-22"
                     /isTUend="TRUE"
     CDS             complement(1381433..1382218)
                     /gene="motB"
                     /locus_tag="BSU_13680"
                     /old_locus_tag="BSU13680"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:16095621, 18566286, 24296669, 24771657, 25273986"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16095621, 18566286,
                     24296669, 24771657, 25273986; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein B; MotB component of the
                     H+-coupled stator flagellum complex"
                     /protein_id="NP_389251.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13680"
                     /db_xref="EnsemblGenomes-Tr:CAB13241"
                     /db_xref="GOA:P28612"
                     /db_xref="InterPro:IPR006665"
                     /db_xref="InterPro:IPR025713"
                     /db_xref="InterPro:IPR036737"
                     /db_xref="SubtiList:BG10689"
                     /db_xref="UniProtKB/Swiss-Prot:P28612"
                     /translation="MARKKKKKHEDEHVDESWLVPYADILTLLLALFIVLYASSSIDA
                     AKFQMLSKSFNEVFTGGTGVLDYSSVTPPENESDGIDEVKKEKEEKEKNKKEKEKAAD
                     QEELENVKSQVEKFIKDKKLEHQLETKMTSEGLLITIKDSIFFDSGKATIRKEDVPLA
                     KEISNLLVINPPRNIIISGHTDNMPIKNSEFQSNWHLSVMRAVNFMGLLIENPKLDAK
                     VFSAKGYGEYKPVASNKTAEGRSKNRRVEVLILPRGAAETNEK*"
     gene            complement(1381433..1382218)
                     /gene="motB"
                     /locus_tag="BSU_13680"
                     /old_locus_tag="BSU13680"
     downshifts      complement(1381452)
                     /Source="Nicolas_upshifts"
                     /id="D755"
                     /incds=0
                     /nref=224
                     /ntot=246
                     /MaxReadThrough="3.05351"
                     /MaxDrop="6.69306"
                     /score="21.3673767"
                     /energy="-12.4"
                     /TU="U1111"
                     /idTUdmin="U1111"
                     /TUdmin="-88"
                     /isTUend="FALSE"
     downshifts      complement(1381914)
                     /Source="Nicolas_upshifts"
                     /id="D756"
                     /incds=1
                     /nref=1
                     /ntot=19
                     /MaxReadThrough="8.03566"
                     /MaxDrop="4.69358"
                     /score="21.3673767"
                     /energy="-12.4"
                     /TU="U1111"
                     /idTUdmin="U1111"
                     /TUdmin="-550"
                     /isTUend="FALSE"
     CDS             complement(1382190..1383002)
                     /gene="motA"
                     /locus_tag="BSU_13690"
                     /old_locus_tag="BSU13690"
                     /function="16.5: Explore"
                     /experiment="publication(s) with functional evidences,
                     PMID:16095621, 18566286, 24296669, 24771657, 25273986"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 16095621, 18566286,
                     24296669, 24771657, 25273986; Product type f: factor"
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein A; MotA component of the
                     H+-coupled stator flagellum complex"
                     /protein_id="NP_389252.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13690"
                     /db_xref="EnsemblGenomes-Tr:CAB13242"
                     /db_xref="GOA:P28611"
                     /db_xref="InterPro:IPR000540"
                     /db_xref="InterPro:IPR002898"
                     /db_xref="SubtiList:BG10688"
                     /db_xref="UniProtKB/Swiss-Prot:P28611"
                     /translation="MDKTSLIGIILAFVALSVGMVLKGVSFSALANPAAILIIIAGTI
                     SAVVIAFPTKEIKKVPTLFRVLFKENKQLTIEELIPMFSEWAQLARREGLLALEASIE
                     DVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVL
                     GAVIGLIAALSHMDNTDELGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKL
                     REVMIEGVLSVLEGQAPKVIEQKLLMYLPAKDRLKFAEQGEAQNGEKKEEEA*"
     gene            complement(1382190..1383002)
                     /gene="motA"
                     /locus_tag="BSU_13690"
                     /old_locus_tag="BSU13690"
     promotor_-10    complement(1383033..1383051)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1111"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2801
                     /SigmaFactorBS="tcttccttgaatatttcatgaacaaattcacaatgtcCCTAA
                     AGTtccgggcaccaaaACCGATATTAACCATAGACaagctagtaaaaaaggatttggt
                     g"
                     /listShort="motA, motB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        complement(1383049)
                     /Source="Nicolas_upshifts"
                     /id="U1111"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2801
                     /SigmaFactorBS="tcttccttgaatatttcatgaacaaattcacaatgtcCCTAA
                     AGTtccgggcaccaaaACCGATATTAACCATAGACaagctagtaaaaaaggatttggt
                     g"
                     /listShort="motA, motB"
                     /GFF_Attribute="listLong"
     promotor_-35    complement(1383065..1383072)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1111"
                     /multdbtbs="SigD"
                     /comp="M10"
                     /sig="SigD"
                     /pcomp=1
                     /psig=1
                     /xcortree=2801
                     /SigmaFactorBS="tcttccttgaatatttcatgaacaaattcacaatgtcCCTAA
                     AGTtccgggcaccaaaACCGATATTAACCATAGACaagctagtaaaaaaggatttggt
                     g"
                     /listShort="motA, motB"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     S_feature       complement(1383140..1383362)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1435383_1435605_c"
                     /HighExp="Diami, dia15, dia5, Heat, Etha, LPhT, H2O2, C30,
                     G135, S7"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.93062599999999995"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.671"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S491"
     downshifts      complement(1383172)
                     /Source="Nicolas_upshifts"
                     /id="D757"
                     /incds=0
                     /nref=5
                     /ntot=12
                     /MaxReadThrough="0.48394"
                     /MaxDrop="4.60081"
                     /score="30.9355071"
                     /energy="-15.4"
                     /TU="NA"
                     /idTUdmin="U1112"
                     /TUdmin="-4"
                     /isTUend="TRUE"
     CDS             complement(1383385..1385484)
                     /gene="clpE"
                     /locus_tag="BSU_13700"
                     /old_locus_tag="BSU13700"
                     /function="16.3: Control"
                     /function="16.6: Maintain"
                     /function="16.8: Protect"
                     /experiment="publication(s) with functional evidences,
                     PMID:9987115, 10320580, 11069659, 14679237, 16788169,
                     16899079, 18689473, 19226326, 21208299, 28333276"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 9987115, 10320580,
                     11069659, 14679237, 16788169, 16899079, 18689473,
                     19226326, 21208299, 28333276; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease (class III stress
                     gene)"
                     /protein_id="NP_389253.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13700"
                     /db_xref="EnsemblGenomes-Tr:CAB13243"
                     /db_xref="GOA:O31673"
                     /db_xref="InterPro:IPR001270"
                     /db_xref="InterPro:IPR001943"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR003959"
                     /db_xref="InterPro:IPR018368"
                     /db_xref="InterPro:IPR019489"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR028299"
                     /db_xref="SubtiList:BG12578"
                     /db_xref="UniProtKB/Swiss-Prot:O31673"
                     /translation="MRCQHCHQNEATIRLNMQINSVHKQMVLCETCYNELTRKPSMSM
                     GPQSFGFPFEQAFQPKEQSAAKQSEKKGLLDELAQNITNGAKAGLIDPVIGRDDEVAR
                     VIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVA
                     NTGIRGQFEERMKQLITELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARG
                     ELQVIGATTLKEYRQIEKDAALERRFQPVMVQEPSIEQAILILQGIKDKYEAYHGVTF
                     SDEAIKACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLLIDELNDEDAAERLTAIEAE
                     KTKALEEENYELAAKLRDEELALEKKLNSSSAHTAVTVEAEHIQEIVEQKTGIPVGKL
                     QADEQTKMKELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGV
                     GKTELSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGHEEAGQLTEKVR
                     RNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAGAGEK
                     QTKVGFQSDDSVIEEQTLIDSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVSLLLGE
                     LEETLAERGISLNVTDEAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDLLLDNGEI
                     TSFHVILEDDKIKVRAK*"
     gene            complement(1383385..1385484)
                     /gene="clpE"
                     /locus_tag="BSU_13700"
                     /old_locus_tag="BSU13700"
     downshifts      complement(1383407)
                     /Source="Nicolas_upshifts"
                     /id="D758"
                     /incds=0
                     /nref=27
                     /ntot=132
                     /MaxReadThrough="4.1802"
                     /MaxDrop="6.07862"
                     /score="41.2563375"
                     /energy="-13.6"
                     /TU="U1112"
                     /idTUdmin="U1112"
                     /TUdmin="-239"
                     /isTUend="FALSE"
     S_feature       complement(1385485..1385735)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1437728_1437978_c"
                     /HighExp="dia5, Heat, Diami, LPhT, dia15, H2O2, HiTm, S2,
                     Cold, S1"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.671"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S492"
     promotor_no_box complement(1385695..1385795)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1112"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.437562437562438"
                     /psig="0.671328671328671"
                     /xcortree=2025
                     /SigmaFactorBS="atgagacaagttccttgaaaagacgaagaaaacatgttttac
                     tttgtaacaaatcaaaaatttttgtgcataagacttgaaagtcaaagatagtcagagt
                     a"
                     /listShort="S492, clpE, S491"
                     /GFF_Attribute="listLong"
                     /label="promotor_no_box"
     upshifts        complement(1385735)
                     /Source="Nicolas_upshifts"
                     /id="U1112"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.437562437562438"
                     /psig="0.671328671328671"
                     /xcortree=2025
                     /SigmaFactorBS="atgagacaagttccttgaaaagacgaagaaaacatgttttac
                     tttgtaacaaatcaaaaatttttgtgcataagacttgaaagtcaaagatagtcagagt
                     a"
                     /listShort="S492, clpE, S491"
                     /GFF_Attribute="listLong"
     promotor_-35    1385771..1385776
                     /Source="Nicolas_upshift_promotors"
                     /id="U1113"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=984
                     /SigmaFactorBS="tgcacaaaaatttttgatttgttacaaagtaaaacatgtttt
                     cttCGTCTTttcaaggaacttgtcTCATAGGTTATAAAAAGGCatatatggacaaaac
                     t"
                     /listShort="ykvI, S493"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     upshifts        1385786
                     /Source="Nicolas_upshifts"
                     /id="U1113"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=984
                     /SigmaFactorBS="tgcacaaaaatttttgatttgttacaaagtaaaacatgtttt
                     cttCGTCTTttcaaggaacttgtcTCATAGGTTATAAAAAGGCatatatggacaaaac
                     t"
                     /listShort="ykvI, S493"
                     /GFF_Attribute="listLong"
     promotor_-10    1385792..1385810
                     /Source="Nicolas_upshift_promotors"
                     /id="U1113"
                     /multdbtbs="SigE"
                     /comp="M3"
                     /sig="SigEF"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=984
                     /SigmaFactorBS="tgcacaaaaatttttgatttgttacaaagtaaaacatgtttt
                     cttCGTCTTttcaaggaacttgtcTCATAGGTTATAAAAAGGCatatatggacaaaac
                     t"
                     /listShort="ykvI, S493"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     CDS             1385849..1386892
                     /gene="ykvI"
                     /locus_tag="BSU_13710"
                     /old_locus_tag="BSU13710"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 15383836, 15849754,
                     16850406, 26735940; Product type t: transporter"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="NP_389254.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13710"
                     /db_xref="EnsemblGenomes-Tr:CAB13244"
                     /db_xref="GOA:O31674"
                     /db_xref="SubtiList:BG13311"
                     /db_xref="UniProtKB/Swiss-Prot:O31674"
                     /translation="MEQSKGSASQLAFVYVGTVVGAGFATGREIVEFFLKFGWFGFFG
                     ILVSGGMFTLLGAKLMIISKRINAKSYQEMNIFLFGATAGRIINVFMLFVLLGVTSVM
                     LSGAGALFEEQLGMSAQIGMLITIGLSLIVMTRGVKGIFGVNVFVVPLLIIFSMIVVA
                     DSFIFSESRNAAQWVWPHRWDWLLSAVSYGALNLSLAQAVLVPLANEMSSEKVIKKGA
                     LIGGTMLTIVLSASFLSLSTLPDVFLYDIPMAQVVYLFARSVHLIYLLIIFGEVFTSV
                     IGNLYGLEKQVQSFLPVKSKYIFAAIMITAYITSQIGYGRLISTIYPLFGYVSLAFIG
                     ALLCKKAPRRRSL*"
     gene            1385849..1386892
                     /gene="ykvI"
                     /locus_tag="BSU_13710"
                     /old_locus_tag="BSU13710"
     S_feature       1386893..1386984
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1439136_1439227"
                     /HighExp="S3, LoTm, S4, S5, BT, M9-stat, S6, T5.0H, T4.0H,
                     Pyr"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigEF"
                     /TUshortPSig="0.999"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S493"
     promotor_-35    1386961..1386965
                     /Source="Nicolas_upshift_promotors"
                     /id="U1114"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.906093906093906"
                     /psig=1
                     /xcortree=2483
                     /SigmaFactorBS="cgataattgatctaggaaccggggactgactttttTATTGtc
                     aagaaaaacatcatTATGGTAAGATAGCAGAAGTgaaaaaattgaagaaaatccgtgc
                     g"
                     /listShort="NA, S494, queC, queD, queE, queF, S495"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1386982..1387001
                     /Source="Nicolas_upshift_promotors"
                     /id="U1114"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.906093906093906"
                     /psig=1
                     /xcortree=2483
                     /SigmaFactorBS="cgataattgatctaggaaccggggactgactttttTATTGtc
                     aagaaaaacatcatTATGGTAAGATAGCAGAAGTgaaaaaattgaagaaaatccgtgc
                     g"
                     /listShort="NA, S494, queC, queD, queE, queF, S495"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1386986
                     /Source="Nicolas_upshifts"
                     /id="U1114"
                     /multdbtbs="-"
                     /comp="M16"
                     /sig="SigA"
                     /pcomp="0.906093906093906"
                     /psig=1
                     /xcortree=2483
                     /SigmaFactorBS="cgataattgatctaggaaccggggactgactttttTATTGtc
                     aagaaaaacatcatTATGGTAAGATAGCAGAAGTgaaaaaattgaagaaaatccgtgc
                     g"
                     /listShort="NA, S494, queC, queD, queE, queF, S495"
                     /GFF_Attribute="listLong"
     misc_RNA        1387031..1387075
                     /gene="qswA"
                     /locus_tag="BSU_misc_RNA_22"
                     /product="preQ1 riboswitch"
                     /experiment="publication(s) with functional evidences,
                     PMID:17384645, 19234468, 19285444, 20534493, 21410253,
                     21592962, 24798077, 27484311"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 17384645, 19234468,
                     19285444, 20534493, 21410253, 21592962, 24798077,
                     27484311; Product type n: RNA"
                     /function="16.3: Control"
     gene            1387031..1387075
                     /gene="qswA"
                     /locus_tag="BSU_misc_RNA_22"
     downshifts      1387052
                     /Source="Nicolas_upshifts"
                     /id="D759"
                     /incds=0
                     /nref=11
                     /ntot=17
                     /MaxReadThrough="7.29177"
                     /MaxDrop="4.09959"
                     /score="21.1398563"
                     /energy="-9.5"
                     /TU="U1114"
                     /idTUdmin="U1113"
                     /TUdmin=0
                     /isTUend="TRUE"
     S_feature       1387097..1387204
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1439340_1439447"
                     /HighExp="Paraq, ferm, G180, LBGstat, Diami, H2O2, LPhT,
                     Oxctl, G135, G150"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S494"
     CDS             1387205..1387864
                     /gene="queC"
                     /locus_tag="BSU_13720"
                     /old_locus_tag="BSU13720"
                     /EC_number="6.3.4.20"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:14660578, 16199558, 17384645, 18491386, 19354300"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 14660578, 16199558,
                     17384645, 18491386, 19354300; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="pre-queuosine 0 synthase"
                     /protein_id="NP_389255.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13720"
                     /db_xref="EnsemblGenomes-Tr:CAB13245"
                     /db_xref="GOA:O31675"
                     /db_xref="InterPro:IPR014729"
                     /db_xref="InterPro:IPR018317"
                     /db_xref="PDB:3BL5"
                     /db_xref="SubtiList:BG13312"
                     /db_xref="UniProtKB/Swiss-Prot:O31675"
                     /translation="MKKEKAIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQRHSQE
                     VEVAKSIAEKLGVKNHLLDMSLLNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFL
                     SFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMW
                     LNKAETWKLADELGALDFVKNNTLTCYNGIIADGCGECPACHLRSKGYEEYMVMKGER
                     A*"
     gene            1387205..1387864
                     /gene="queC"
                     /locus_tag="BSU_13720"
                     /old_locus_tag="BSU13720"
     CDS             1387857..1388306
                     /gene="queD"
                     /locus_tag="BSU_13730"
                     /old_locus_tag="BSU13730"
                     /EC_number="4.1.2.50"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12123838, 14660578, 16199558, 18259064, 19231875"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12123838, 14660578,
                     16199558, 18259064, 19231875; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxy-5,6,7,8-tetrahydropterin synthase;
                     queuosine biosynthesis"
                     /protein_id="NP_389256.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13730"
                     /db_xref="EnsemblGenomes-Tr:CAB13246"
                     /db_xref="GOA:O31676"
                     /db_xref="InterPro:IPR007115"
                     /db_xref="SubtiList:BG13313"
                     /db_xref="UniProtKB/Swiss-Prot:O31676"
                     /translation="MHKLLSQIYPQAQHPYSFELNKDMHISAAHFIPRESAGACSRVH
                     GHTYTVNITVAGDELDDSGFLVNFSVLKKLVHGNYDHTLLNDHEDFSQDDRYSLPTTE
                     VVAKTIYDNVQAYLDTLENKPTCVQVFVRETPTSYCVYRPKKGGLNG*"
     gene            1387857..1388306
                     /gene="queD"
                     /locus_tag="BSU_13730"
                     /old_locus_tag="BSU13730"
     CDS             1388299..1389030
                     /gene="queE"
                     /locus_tag="BSU_13740"
                     /old_locus_tag="BSU13740"
                     /EC_number="4.3.99.3"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12123838, 14660578, 16199558, 19354300, 23194065"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12123838, 14660578,
                     16199558, 19354300, 23194065; Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase"
                     /protein_id="NP_389257.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13740"
                     /db_xref="EnsemblGenomes-Tr:CAB13247"
                     /db_xref="GOA:O31677"
                     /db_xref="InterPro:IPR007197"
                     /db_xref="InterPro:IPR017742"
                     /db_xref="InterPro:IPR023404"
                     /db_xref="InterPro:IPR024924"
                     /db_xref="PDB:5TGS"
                     /db_xref="PDB:5TH5"
                     /db_xref="SubtiList:BG13314"
                     /db_xref="UniProtKB/Swiss-Prot:O31677"
                     /translation="MAKGIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDYSCSWCDSA
                     FTWDGSAKKDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENN
                     IRAALETQGTVYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQENDRQHAVSL
                     KVVIFNDEDLEFAKTVHKRYPGIPFYLQVGNDDVHTTDDQSLIAHLLGKYEALVDKVA
                     VDAELNLVRVLPQLHTLLWGNKRGV*"
     gene            1388299..1389030
                     /gene="queE"
                     /locus_tag="BSU_13740"
                     /old_locus_tag="BSU13740"
     CDS             1389048..1389545
                     /gene="queF"
                     /locus_tag="BSU_13750"
                     /old_locus_tag="BSU13750"
                     /EC_number="1.7.1.13"
                     /function="10.3: tRNA and rRNA base modification"
                     /function="16.2: Construct biomass (Anabolism)"
                     /experiment="publication(s) with functional evidences,
                     PMID:12123838, 14660578, 16199558, 17929836, 22938038,
                     23410922, 28300774"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 12123838, 14660578,
                     16199558, 17929836, 22938038, 23410922, 28300774; Product
                     type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine
                     reductase"
                     /protein_id="NP_389258.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13750"
                     /db_xref="EnsemblGenomes-Tr:CAB13248"
                     /db_xref="GOA:O31678"
                     /db_xref="InterPro:IPR016856"
                     /db_xref="InterPro:IPR029500"
                     /db_xref="PDB:4F8B"
                     /db_xref="PDB:4FGC"
                     /db_xref="PDB:5UDG"
                     /db_xref="SubtiList:BG13315"
                     /db_xref="UniProtKB/Swiss-Prot:O31678"
                     /translation="MTTRKESELEGVTLLGNQGTNYLFEYAPDVLESFPNKHVNRDYF
                     VKFNCPEFTSLCPKTGQPDFATIYISYIPDEKMVESKSLKLYLFSFRNHGDFHEDCMN
                     IIMNDLIELMDPRYIEVWGKFTPRGGISIDPYTNYGKPGTKYEKMAEYRMMNHDLYPE
                     TIDNR*"
     gene            1389048..1389545
                     /gene="queF"
                     /locus_tag="BSU_13750"
                     /old_locus_tag="BSU13750"
     S_feature       1389546..1389822
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1441789_1442065"
                     /HighExp="Paraq, ferm, LPhT, C30, G135, G180, LBGstat,
                     Oxctl, G150, Diami"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="NA"
                     /TUshortSig="SigA"
                     /TUshortPSig=1
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S495"
     downshifts      1389780
                     /Source="Nicolas_upshifts"
                     /id="D760"
                     /incds=0
                     /nref=200
                     /ntot=247
                     /MaxReadThrough="1.17154"
                     /MaxDrop="6.60953"
                     /score="11.1883045"
                     /energy="-7.8"
                     /TU="NA"
                     /idTUdmin="U1114"
                     /TUdmin=0
                     /isTUend="TRUE"
     downshifts      complement(1389790)
                     /Source="Nicolas_upshifts"
                     /id="D761"
                     /incds=0
                     /nref=1
                     /ntot=4
                     /MaxReadThrough="1.54726"
                     /MaxDrop="2.16508"
                     /score="6.24357423"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U1115"
                     /TUdmin=110
                     /isTUend="FALSE"
     S_feature       complement(1389859..1390103)
                     /Source="Nicolas_S_feature"
                     /locus_tag="new_1442102_1442346_c"
                     /HighExp="Diami, dia5, LPhT, Etha, Salt, dia15, Heat,
                     HiTm, C30, HiOs"
                     /AntisenseName="NA"
                     /AntisenseCor="NA"
                     /AntisenseRegPval="NA"
                     /CDS_PredictionProba="0.15795400000000001"
                     /TUshortSig="SigA"
                     /TUshortPSig="0.997"
                     /TUlongSig="NA"
                     /TUlongPSig="NA"
                     /label="S496"
     downshifts      complement(1389900)
                     /Source="Nicolas_upshifts"
                     /id="D762"
                     /incds=0
                     /nref=47
                     /ntot=193
                     /MaxReadThrough="2.13712"
                     /MaxDrop="5.08206"
                     /score="6.24357423"
                     /energy="-7.6"
                     /TU="NA"
                     /idTUdmin="U1115"
                     /TUdmin=0
                     /isTUend="TRUE"
     CDS             complement(1390104..1390460)
                     /gene="ykvN"
                     /locus_tag="BSU_13760"
                     /old_locus_tag="BSU13760"
                     /function="16.3: Control"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16683018; Product type
                     r: regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcriptional regulator (HGT island)"
                     /protein_id="NP_389259.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13760"
                     /db_xref="EnsemblGenomes-Tr:CAB13249"
                     /db_xref="GOA:O31679"
                     /db_xref="InterPro:IPR002577"
                     /db_xref="InterPro:IPR036388"
                     /db_xref="InterPro:IPR036390"
                     /db_xref="SubtiList:BG13316"
                     /db_xref="UniProtKB/Swiss-Prot:O31679"
                     /translation="MKKFSCGFEVTKEVIGGKWKGLVLYFLMNGPKRTSELKRIIPNI
                     TQKMLIQTLRELEASGLVSRKMYNQVPPKVEYSSTELGESLKPILQELCQWGGYYAEQ
                     EYAEGEYEIVQPEQLS*"
     gene            complement(1390104..1390460)
                     /gene="ykvN"
                     /locus_tag="BSU_13760"
                     /old_locus_tag="BSU13760"
     misc_feature    complement(1390491..1390510)
                     /Source="Nicolas_upshift_promotors"
                     /id="U1115"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.727272727272727"
                     /psig="0.997002997002997"
                     /xcortree=1897
                     /SigmaFactorBS="acaacttacaagatatagtatccttcagtaagcacattatcg
                     gaagtacccactttttTGTGATATAGTAACTAAAAAgtaataaatgtggaatggagag
                     c"
                     /listShort="ykvN, S496"
                     /GFF_Attribute="listLong"
                     /label="promotor_single_box"
                     /note="Geneious type: promotor_single_box"
     upshifts        complement(1390508)
                     /Source="Nicolas_upshifts"
                     /id="U1115"
                     /multdbtbs="-"
                     /comp="M4"
                     /sig="SigA"
                     /pcomp="0.727272727272727"
                     /psig="0.997002997002997"
                     /xcortree=1897
                     /SigmaFactorBS="acaacttacaagatatagtatccttcagtaagcacattatcg
                     gaagtacccactttttTGTGATATAGTAACTAAAAAgtaataaatgtggaatggagag
                     c"
                     /listShort="ykvN, S496"
                     /GFF_Attribute="listLong"
     promotor_-35    1390526
                     /Source="Nicolas_upshift_promotors"
                     /id="U1116"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.313686313686314"
                     /psig="0.954045954045954"
                     /xcortree=1793
                     /SigmaFactorBS="ctttttagttactatatcacaaaaaagtgggtacttCcgata
                     atgtgcttactgaAGGATACTATATCTTGTAAgttgttcttcaagtacttaaaggtac
                     t"
                     /listShort="ykvO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1390545..1390563
                     /Source="Nicolas_upshift_promotors"
                     /id="U1116"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.313686313686314"
                     /psig="0.954045954045954"
                     /xcortree=1793
                     /SigmaFactorBS="ctttttagttactatatcacaaaaaagtgggtacttCcgata
                     atgtgcttactgaAGGATACTATATCTTGTAAgttgttcttcaagtacttaaaggtac
                     t"
                     /listShort="ykvO"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1390550
                     /Source="Nicolas_upshifts"
                     /id="U1116"
                     /multdbtbs="-"
                     /comp="M19"
                     /sig="SigA"
                     /pcomp="0.313686313686314"
                     /psig="0.954045954045954"
                     /xcortree=1793
                     /SigmaFactorBS="ctttttagttactatatcacaaaaaagtgggtacttCcgata
                     atgtgcttactgaAGGATACTATATCTTGTAAgttgttcttcaagtacttaaaggtac
                     t"
                     /listShort="ykvO"
                     /GFF_Attribute="listLong"
     CDS             1390629..1391375
                     /gene="ykvO"
                     /locus_tag="BSU_13770"
                     /old_locus_tag="BSU13770"
                     /EC_number="1.-.-.-"
                     /inference="ab initio prediction:AMIGene:2.0"
                     /note="Evidence 3: Putative function from multiple
                     computational evidences; PubMedId: 16683018, 26494135;
                     Product type e: enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="putative oxidoreductase (HGT island)"
                     /protein_id="NP_389260.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13770"
                     /db_xref="EnsemblGenomes-Tr:CAB13250"
                     /db_xref="GOA:O31680"
                     /db_xref="InterPro:IPR002347"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="SubtiList:BG13317"
                     /db_xref="UniProtKB/Swiss-Prot:O31680"
                     /translation="MGKFEGKIALVTGGTSGIGLATAQKFVNEGAYVYITGRRQNELD
                     KAVNQIGKNVTGVQGDISKLEDLDKLYDIIKQEKGKLDILFANAGIGNFLPLGEITEE
                     QVDRTFDINVKGTIFTVQKALSLFPDKVGSIIVTGSTAGSIGNPAFSVYGASKAALRA
                     LVRNWILDLKGTEIRVNVVSPGGILTPAYDELFGDALEEVLENSRNTVPAGKVGTPEE
                     VANAVSFLASDESSYLTGVELFVDGGLAQV*"
     gene            1390629..1391375
                     /gene="ykvO"
                     /locus_tag="BSU_13770"
                     /old_locus_tag="BSU13770"
     downshifts      1391430
                     /Source="Nicolas_upshifts"
                     /id="D763"
                     /incds=0
                     /nref=19
                     /ntot=146
                     /MaxReadThrough="0.723690000000001"
                     /MaxDrop="4.37163"
                     /score="1.34631843"
                     /energy="-9.1"
                     /TU="NA"
                     /idTUdmin="U1116"
                     /TUdmin=0
                     /isTUend="TRUE"
     promotor_-35    1391778..1391786
                     /Source="Nicolas_upshift_promotors"
                     /id="U1117"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1420
                     /SigmaFactorBS="tctcgtgatctcacacctgaacgttttttatagaCTAGTACC
                     GcgacaagttatatTACATATACATACCAATAAAgtagacattaaaaagtgaaagaga
                     g"
                     /listShort="ykvP, ykzQ, S497, ykvQ, ykzR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1391800..1391819
                     /Source="Nicolas_upshift_promotors"
                     /id="U1117"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1420
                     /SigmaFactorBS="tctcgtgatctcacacctgaacgttttttatagaCTAGTACC
                     GcgacaagttatatTACATATACATACCAATAAAgtagacattaaaaagtgaaagaga
                     g"
                     /listShort="ykvP, ykzQ, S497, ykvQ, ykzR"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1391804
                     /Source="Nicolas_upshifts"
                     /id="U1117"
                     /multdbtbs="-"
                     /comp="M5"
                     /sig="SigK"
                     /pcomp="0.997002997002997"
                     /psig="0.997002997002997"
                     /xcortree=1420
                     /SigmaFactorBS="tctcgtgatctcacacctgaacgttttttatagaCTAGTACC
                     GcgacaagttatatTACATATACATACCAATAAAgtagacattaaaaagtgaaagaga
                     g"
                     /listShort="ykvP, ykzQ, S497, ykvQ, ykzR"
                     /GFF_Attribute="listLong"
     CDS             1391856..1393055
                     /gene="ykvP"
                     /locus_tag="BSU_13780"
                     /old_locus_tag="BSU13780"
                     /function="16.8: Protect"
                     /function="16.13: Shape"
                     /experiment="publication(s) with functional evidences,
                     PMID:11011148, 16683018"
                     /note="Evidence 1a: Function from experimental evidences
                     in the studied strain; PubMedId: 11011148, 16683018;
                     Product type cp: cell process"
                     /codon_start=1
                     /transl_table=11
                     /product="spore protein (HGT island)"
                     /protein_id="NP_389261.1"
                     /db_xref="EnsemblGenomes-Gn:BSU13780"
                     /db_xref="EnsemblGenomes-Tr:CAB13251"
                     /db_xref="GOA:O31681"
                     /db_xref="InterPro:IPR018392"
                     /db_xref="InterPro:IPR036779"
                     /db_xref="SubtiList:BG13318"
                     /db_xref="UniProtKB/Swiss-Prot:O31681"
                     /translation="MKILFLESHPMWLYGLPNGFREAGHTVMISGPVSRENITEMIDE
                     FKPDLIVSMGWTPEHSREKQAWIRNATKKVNIPLVYWATEDPLHTQNFTIPLIKKMKP
                     DFVFTVTPSLCKTYESMGIKAAHLDFAFHESIHHQIKPLAKYSCDIAVVANAYPNFLE
                     EHPEVFRSSSLKTLIRPLIRKGIRIDFWGRNWEKMSKYIGREIPRNWIHGYLDYTEAY
                     KVYSSAKIIIGLQNCESQLTQRTYEILGSGGFLLTSDTPAVRGKFKPGRDLIVSSSPK
                     ETLEKVKYYLNHDSERKKIQINGKKAVKNDSYRHRAERMLEVLKSRGIIRNLGETIHY
                     VDVLKEKYVIHHVTPGETLSIIASKYNVSLQQLMELNHFKSDQIYAGQIIKIREKLFR
                     NINNKLF*"
     gene            1391856..1393055
                     /gene="ykvP"
                     /locus_tag="BSU_13780"
                     /old_locus_tag="BSU13780"
     promotor_-35    1391938..1391944
                     /Source="Nicolas_upshift_promotors"
                     /id="U1118"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=152
                     /SigmaFactorBS="cgaatgggtttagggaagcaggacataccgtaaTGATTTCcg
                     gtcctgtaagtcGGGAAAATATAACTGAAATgatagacgaatttaaaccagatttaat
                     a"
                     /listShort="ykzQ, S497, ykvQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-35"
     promotor_-10    1391959..1391977
                     /Source="Nicolas_upshift_promotors"
                     /id="U1118"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=152
                     /SigmaFactorBS="cgaatgggtttagggaagcaggacataccgtaaTGATTTCcg
                     gtcctgtaagtcGGGAAAATATAACTGAAATgatagacgaatttaaaccagatttaat
                     a"
                     /listShort="ykzQ, S497, ykvQ"
                     /GFF_Attribute="listLong"
                     /label="promotor_-10"
     upshifts        1391965
                     /Source="Nicolas_upshifts"
                     /id="U1118"
                     /multdbtbs="-"
                     /comp="M11"
                     /sig="SigB"
                     /pcomp="0.999000999001"
                     /psig="0.999000999001"
                     /xcortree=152
                     /SigmaFactorBS="cgaatgggtttagggaagcaggacataccgtaaTGATTTCcg
                     gtcctgtaagtcGGGAAAATATAACTGAAATgatagacgaatttaaaccagatttaat
                     a"
                     /listShort="ykzQ, S497, ykvQ"
                     /GFF_Attribute="listLong"
     promotor_-35    1393024..1393026
                     /Source="Nicolas_upshift_promotors"
                     /id="U1119"
                     /multdbtbs="-"
                     /comp="M14"
                     /sig="SigA"
                     /pcomp="0.346653346653347"
                     /psig="0.602397602397602"
                     /xcortree=2158
                     /SigmaFactorBS="acaaatcattaagattagagagaaacTGTttagaaatattaa
                     taacaaATTATTCT